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bwa-gatk.mf
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BATCH_OPTIONS= Requirements = (Arch == x86_64) && (OpSys == LINUX) && (Memory > 16384)
SM10001.fq SM10012.fq SM10024.fq SM10034.fq SM10045.fq SM10062.fq SM10081.fq SM10002.fq SM10015.fq SM10025.fq SM10036.fq SM10046.fq SM10072.fq SM10082.fq SM10003.fq SM10016.fq SM10026.fq SM10037.fq SM10048.fq SM10074.fq SM10004.fq SM10017.fq SM10027.fq SM10039.fq SM10049.fq SM10075.fq SM10005.fq SM10018.fq SM10028.fq SM10040.fq SM10050.fq SM10076.fq SM10006.fq SM10019.fq SM10029.fq SM10041.fq SM10051.fq SM10077.fq SM10007.fq SM10021.fq SM10030.fq SM10042.fq SM10060.fq SM10078.fq SM10009.fq SM10023.fq SM10031.fq SM10044.fq SM10061.fq SM10079.fq : bwa_split_indiv plate1.trimmed.fq Barcode_Progeny_Plate1.txt
LOCAL perl bwa_split_indiv Barcode_Progeny_Plate1.txt plate1.trimmed.fq
SM10001.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10001.fq
./bwa aln oak2.fa SM10001.fq > SM10001.sai
SM10012.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10012.fq
./bwa aln oak2.fa SM10012.fq > SM10012.sai
SM10024.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10024.fq
./bwa aln oak2.fa SM10024.fq > SM10024.sai
SM10034.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10034.fq
./bwa aln oak2.fa SM10034.fq > SM10034.sai
SM10045.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10045.fq
./bwa aln oak2.fa SM10045.fq > SM10045.sai
SM10062.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10062.fq
./bwa aln oak2.fa SM10062.fq > SM10062.sai
SM10081.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10081.fq
./bwa aln oak2.fa SM10081.fq > SM10081.sai
SM10002.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10002.fq
./bwa aln oak2.fa SM10002.fq > SM10002.sai
SM10015.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10015.fq
./bwa aln oak2.fa SM10015.fq > SM10015.sai
SM10025.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10025.fq
./bwa aln oak2.fa SM10025.fq > SM10025.sai
SM10036.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10036.fq
./bwa aln oak2.fa SM10036.fq > SM10036.sai
SM10046.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10046.fq
./bwa aln oak2.fa SM10046.fq > SM10046.sai
SM10072.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10072.fq
./bwa aln oak2.fa SM10072.fq > SM10072.sai
SM10082.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10082.fq
./bwa aln oak2.fa SM10082.fq > SM10082.sai
SM10003.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10003.fq
./bwa aln oak2.fa SM10003.fq > SM10003.sai
SM10016.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10016.fq
./bwa aln oak2.fa SM10016.fq > SM10016.sai
SM10026.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10026.fq
./bwa aln oak2.fa SM10026.fq > SM10026.sai
SM10037.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10037.fq
./bwa aln oak2.fa SM10037.fq > SM10037.sai
SM10048.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10048.fq
./bwa aln oak2.fa SM10048.fq > SM10048.sai
SM10074.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10074.fq
./bwa aln oak2.fa SM10074.fq > SM10074.sai
SM10004.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10004.fq
./bwa aln oak2.fa SM10004.fq > SM10004.sai
SM10017.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10017.fq
./bwa aln oak2.fa SM10017.fq > SM10017.sai
SM10027.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10027.fq
./bwa aln oak2.fa SM10027.fq > SM10027.sai
SM10039.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10039.fq
./bwa aln oak2.fa SM10039.fq > SM10039.sai
SM10049.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10049.fq
./bwa aln oak2.fa SM10049.fq > SM10049.sai
SM10075.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10075.fq
./bwa aln oak2.fa SM10075.fq > SM10075.sai
SM10005.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10005.fq
./bwa aln oak2.fa SM10005.fq > SM10005.sai
SM10018.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10018.fq
./bwa aln oak2.fa SM10018.fq > SM10018.sai
SM10028.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10028.fq
./bwa aln oak2.fa SM10028.fq > SM10028.sai
SM10040.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10040.fq
./bwa aln oak2.fa SM10040.fq > SM10040.sai
SM10050.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10050.fq
./bwa aln oak2.fa SM10050.fq > SM10050.sai
SM10076.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10076.fq
./bwa aln oak2.fa SM10076.fq > SM10076.sai
SM10006.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10006.fq
./bwa aln oak2.fa SM10006.fq > SM10006.sai
SM10019.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10019.fq
./bwa aln oak2.fa SM10019.fq > SM10019.sai
SM10029.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10029.fq
./bwa aln oak2.fa SM10029.fq > SM10029.sai
SM10041.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10041.fq
./bwa aln oak2.fa SM10041.fq > SM10041.sai
SM10051.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10051.fq
./bwa aln oak2.fa SM10051.fq > SM10051.sai
SM10077.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10077.fq
./bwa aln oak2.fa SM10077.fq > SM10077.sai
SM10007.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10007.fq
./bwa aln oak2.fa SM10007.fq > SM10007.sai
SM10021.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10021.fq
./bwa aln oak2.fa SM10021.fq > SM10021.sai
SM10030.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10030.fq
./bwa aln oak2.fa SM10030.fq > SM10030.sai
SM10042.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10042.fq
./bwa aln oak2.fa SM10042.fq > SM10042.sai
SM10060.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10060.fq
./bwa aln oak2.fa SM10060.fq > SM10060.sai
SM10078.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10078.fq
./bwa aln oak2.fa SM10078.fq > SM10078.sai
SM10009.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10009.fq
./bwa aln oak2.fa SM10009.fq > SM10009.sai
SM10023.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10023.fq
./bwa aln oak2.fa SM10023.fq > SM10023.sai
SM10031.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10031.fq
./bwa aln oak2.fa SM10031.fq > SM10031.sai
SM10044.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10044.fq
./bwa aln oak2.fa SM10044.fq > SM10044.sai
SM10061.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10061.fq
./bwa aln oak2.fa SM10061.fq > SM10061.sai
SM10079.sai : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10079.fq
./bwa aln oak2.fa SM10079.fq > SM10079.sai
SM10001.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10001.fq SM10001.sai
./bwa samse oak2.fa SM10001.sai SM10001.fq > SM10001.sam
SM10012.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10012.fq SM10012.sai
./bwa samse oak2.fa SM10012.sai SM10012.fq > SM10012.sam
SM10024.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10024.fq SM10024.sai
./bwa samse oak2.fa SM10024.sai SM10024.fq > SM10024.sam
SM10034.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10034.fq SM10034.sai
./bwa samse oak2.fa SM10034.sai SM10034.fq > SM10034.sam
SM10045.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10045.fq SM10045.sai
./bwa samse oak2.fa SM10045.sai SM10045.fq > SM10045.sam
SM10062.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10062.fq SM10062.sai
./bwa samse oak2.fa SM10062.sai SM10062.fq > SM10062.sam
SM10081.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10081.fq SM10081.sai
./bwa samse oak2.fa SM10081.sai SM10081.fq > SM10081.sam
SM10002.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10002.fq SM10002.sai
./bwa samse oak2.fa SM10002.sai SM10002.fq > SM10002.sam
SM10015.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10015.fq SM10015.sai
./bwa samse oak2.fa SM10015.sai SM10015.fq > SM10015.sam
SM10025.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10025.fq SM10025.sai
./bwa samse oak2.fa SM10025.sai SM10025.fq > SM10025.sam
SM10036.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10036.fq SM10036.sai
./bwa samse oak2.fa SM10036.sai SM10036.fq > SM10036.sam
SM10046.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10046.fq SM10046.sai
./bwa samse oak2.fa SM10046.sai SM10046.fq > SM10046.sam
SM10072.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10072.fq SM10072.sai
./bwa samse oak2.fa SM10072.sai SM10072.fq > SM10072.sam
SM10082.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10082.fq SM10082.sai
./bwa samse oak2.fa SM10082.sai SM10082.fq > SM10082.sam
SM10003.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10003.fq SM10003.sai
./bwa samse oak2.fa SM10003.sai SM10003.fq > SM10003.sam
SM10016.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10016.fq SM10016.sai
./bwa samse oak2.fa SM10016.sai SM10016.fq > SM10016.sam
SM10026.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10026.fq SM10026.sai
./bwa samse oak2.fa SM10026.sai SM10026.fq > SM10026.sam
SM10037.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10037.fq SM10037.sai
./bwa samse oak2.fa SM10037.sai SM10037.fq > SM10037.sam
SM10048.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10048.fq SM10048.sai
./bwa samse oak2.fa SM10048.sai SM10048.fq > SM10048.sam
SM10074.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10074.fq SM10074.sai
./bwa samse oak2.fa SM10074.sai SM10074.fq > SM10074.sam
SM10004.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10004.fq SM10004.sai
./bwa samse oak2.fa SM10004.sai SM10004.fq > SM10004.sam
SM10017.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10017.fq SM10017.sai
./bwa samse oak2.fa SM10017.sai SM10017.fq > SM10017.sam
SM10027.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10027.fq SM10027.sai
./bwa samse oak2.fa SM10027.sai SM10027.fq > SM10027.sam
SM10039.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10039.fq SM10039.sai
./bwa samse oak2.fa SM10039.sai SM10039.fq > SM10039.sam
SM10049.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10049.fq SM10049.sai
./bwa samse oak2.fa SM10049.sai SM10049.fq > SM10049.sam
SM10075.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10075.fq SM10075.sai
./bwa samse oak2.fa SM10075.sai SM10075.fq > SM10075.sam
SM10005.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10005.fq SM10005.sai
./bwa samse oak2.fa SM10005.sai SM10005.fq > SM10005.sam
SM10018.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10018.fq SM10018.sai
./bwa samse oak2.fa SM10018.sai SM10018.fq > SM10018.sam
SM10028.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10028.fq SM10028.sai
./bwa samse oak2.fa SM10028.sai SM10028.fq > SM10028.sam
SM10040.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10040.fq SM10040.sai
./bwa samse oak2.fa SM10040.sai SM10040.fq > SM10040.sam
SM10050.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10050.fq SM10050.sai
./bwa samse oak2.fa SM10050.sai SM10050.fq > SM10050.sam
SM10076.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10076.fq SM10076.sai
./bwa samse oak2.fa SM10076.sai SM10076.fq > SM10076.sam
SM10006.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10006.fq SM10006.sai
./bwa samse oak2.fa SM10006.sai SM10006.fq > SM10006.sam
SM10019.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10019.fq SM10019.sai
./bwa samse oak2.fa SM10019.sai SM10019.fq > SM10019.sam
SM10029.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10029.fq SM10029.sai
./bwa samse oak2.fa SM10029.sai SM10029.fq > SM10029.sam
SM10041.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10041.fq SM10041.sai
./bwa samse oak2.fa SM10041.sai SM10041.fq > SM10041.sam
SM10051.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10051.fq SM10051.sai
./bwa samse oak2.fa SM10051.sai SM10051.fq > SM10051.sam
SM10077.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10077.fq SM10077.sai
./bwa samse oak2.fa SM10077.sai SM10077.fq > SM10077.sam
SM10007.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10007.fq SM10007.sai
./bwa samse oak2.fa SM10007.sai SM10007.fq > SM10007.sam
SM10021.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10021.fq SM10021.sai
./bwa samse oak2.fa SM10021.sai SM10021.fq > SM10021.sam
SM10030.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10030.fq SM10030.sai
./bwa samse oak2.fa SM10030.sai SM10030.fq > SM10030.sam
SM10042.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10042.fq SM10042.sai
./bwa samse oak2.fa SM10042.sai SM10042.fq > SM10042.sam
SM10060.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10060.fq SM10060.sai
./bwa samse oak2.fa SM10060.sai SM10060.fq > SM10060.sam
SM10078.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10078.fq SM10078.sai
./bwa samse oak2.fa SM10078.sai SM10078.fq > SM10078.sam
SM10009.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10009.fq SM10009.sai
./bwa samse oak2.fa SM10009.sai SM10009.fq > SM10009.sam
SM10023.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10023.fq SM10023.sai
./bwa samse oak2.fa SM10023.sai SM10023.fq > SM10023.sam
SM10031.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10031.fq SM10031.sai
./bwa samse oak2.fa SM10031.sai SM10031.fq > SM10031.sam
SM10044.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10044.fq SM10044.sai
./bwa samse oak2.fa SM10044.sai SM10044.fq > SM10044.sam
SM10061.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10061.fq SM10061.sai
./bwa samse oak2.fa SM10061.sai SM10061.fq > SM10061.sam
SM10079.sam : bwa oak2.fa oak2.fa.amb oak2.fa.ann oak2.fa.bwt oak2.fa.sa oak2.fa.pac SM10079.fq SM10079.sai
./bwa samse oak2.fa SM10079.sai SM10079.fq > SM10079.sam
SM10001.0.sam SM10001.1.sam SM10001.2.sam SM10001.3.sam SM10001.4.sam SM10001.5.sam SM10001.6.sam SM10001.7.sam SM10001.8.sam SM10001.9.sam: gatk_split_align SM10001.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10001.sam
SM10012.0.sam SM10012.1.sam SM10012.2.sam SM10012.3.sam SM10012.4.sam SM10012.5.sam SM10012.6.sam SM10012.7.sam SM10012.8.sam SM10012.9.sam: gatk_split_align SM10012.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10012.sam
SM10024.0.sam SM10024.1.sam SM10024.2.sam SM10024.3.sam SM10024.4.sam SM10024.5.sam SM10024.6.sam SM10024.7.sam SM10024.8.sam SM10024.9.sam: gatk_split_align SM10024.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10024.sam
SM10034.0.sam SM10034.1.sam SM10034.2.sam SM10034.3.sam SM10034.4.sam SM10034.5.sam SM10034.6.sam SM10034.7.sam SM10034.8.sam SM10034.9.sam: gatk_split_align SM10034.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10034.sam
SM10045.0.sam SM10045.1.sam SM10045.2.sam SM10045.3.sam SM10045.4.sam SM10045.5.sam SM10045.6.sam SM10045.7.sam SM10045.8.sam SM10045.9.sam: gatk_split_align SM10045.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10045.sam
SM10062.0.sam SM10062.1.sam SM10062.2.sam SM10062.3.sam SM10062.4.sam SM10062.5.sam SM10062.6.sam SM10062.7.sam SM10062.8.sam SM10062.9.sam: gatk_split_align SM10062.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10062.sam
SM10081.0.sam SM10081.1.sam SM10081.2.sam SM10081.3.sam SM10081.4.sam SM10081.5.sam SM10081.6.sam SM10081.7.sam SM10081.8.sam SM10081.9.sam: gatk_split_align SM10081.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10081.sam
SM10002.0.sam SM10002.1.sam SM10002.2.sam SM10002.3.sam SM10002.4.sam SM10002.5.sam SM10002.6.sam SM10002.7.sam SM10002.8.sam SM10002.9.sam: gatk_split_align SM10002.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10002.sam
SM10015.0.sam SM10015.1.sam SM10015.2.sam SM10015.3.sam SM10015.4.sam SM10015.5.sam SM10015.6.sam SM10015.7.sam SM10015.8.sam SM10015.9.sam: gatk_split_align SM10015.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10015.sam
SM10025.0.sam SM10025.1.sam SM10025.2.sam SM10025.3.sam SM10025.4.sam SM10025.5.sam SM10025.6.sam SM10025.7.sam SM10025.8.sam SM10025.9.sam: gatk_split_align SM10025.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10025.sam
SM10036.0.sam SM10036.1.sam SM10036.2.sam SM10036.3.sam SM10036.4.sam SM10036.5.sam SM10036.6.sam SM10036.7.sam SM10036.8.sam SM10036.9.sam: gatk_split_align SM10036.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10036.sam
SM10046.0.sam SM10046.1.sam SM10046.2.sam SM10046.3.sam SM10046.4.sam SM10046.5.sam SM10046.6.sam SM10046.7.sam SM10046.8.sam SM10046.9.sam: gatk_split_align SM10046.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10046.sam
SM10072.0.sam SM10072.1.sam SM10072.2.sam SM10072.3.sam SM10072.4.sam SM10072.5.sam SM10072.6.sam SM10072.7.sam SM10072.8.sam SM10072.9.sam: gatk_split_align SM10072.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10072.sam
SM10082.0.sam SM10082.1.sam SM10082.2.sam SM10082.3.sam SM10082.4.sam SM10082.5.sam SM10082.6.sam SM10082.7.sam SM10082.8.sam SM10082.9.sam: gatk_split_align SM10082.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10082.sam
SM10003.0.sam SM10003.1.sam SM10003.2.sam SM10003.3.sam SM10003.4.sam SM10003.5.sam SM10003.6.sam SM10003.7.sam SM10003.8.sam SM10003.9.sam: gatk_split_align SM10003.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10003.sam
SM10016.0.sam SM10016.1.sam SM10016.2.sam SM10016.3.sam SM10016.4.sam SM10016.5.sam SM10016.6.sam SM10016.7.sam SM10016.8.sam SM10016.9.sam: gatk_split_align SM10016.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10016.sam
SM10026.0.sam SM10026.1.sam SM10026.2.sam SM10026.3.sam SM10026.4.sam SM10026.5.sam SM10026.6.sam SM10026.7.sam SM10026.8.sam SM10026.9.sam: gatk_split_align SM10026.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10026.sam
SM10037.0.sam SM10037.1.sam SM10037.2.sam SM10037.3.sam SM10037.4.sam SM10037.5.sam SM10037.6.sam SM10037.7.sam SM10037.8.sam SM10037.9.sam: gatk_split_align SM10037.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10037.sam
SM10048.0.sam SM10048.1.sam SM10048.2.sam SM10048.3.sam SM10048.4.sam SM10048.5.sam SM10048.6.sam SM10048.7.sam SM10048.8.sam SM10048.9.sam: gatk_split_align SM10048.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10048.sam
SM10074.0.sam SM10074.1.sam SM10074.2.sam SM10074.3.sam SM10074.4.sam SM10074.5.sam SM10074.6.sam SM10074.7.sam SM10074.8.sam SM10074.9.sam: gatk_split_align SM10074.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10074.sam
SM10004.0.sam SM10004.1.sam SM10004.2.sam SM10004.3.sam SM10004.4.sam SM10004.5.sam SM10004.6.sam SM10004.7.sam SM10004.8.sam SM10004.9.sam: gatk_split_align SM10004.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10004.sam
SM10017.0.sam SM10017.1.sam SM10017.2.sam SM10017.3.sam SM10017.4.sam SM10017.5.sam SM10017.6.sam SM10017.7.sam SM10017.8.sam SM10017.9.sam: gatk_split_align SM10017.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10017.sam
SM10027.0.sam SM10027.1.sam SM10027.2.sam SM10027.3.sam SM10027.4.sam SM10027.5.sam SM10027.6.sam SM10027.7.sam SM10027.8.sam SM10027.9.sam: gatk_split_align SM10027.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10027.sam
SM10039.0.sam SM10039.1.sam SM10039.2.sam SM10039.3.sam SM10039.4.sam SM10039.5.sam SM10039.6.sam SM10039.7.sam SM10039.8.sam SM10039.9.sam: gatk_split_align SM10039.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10039.sam
SM10049.0.sam SM10049.1.sam SM10049.2.sam SM10049.3.sam SM10049.4.sam SM10049.5.sam SM10049.6.sam SM10049.7.sam SM10049.8.sam SM10049.9.sam: gatk_split_align SM10049.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10049.sam
SM10075.0.sam SM10075.1.sam SM10075.2.sam SM10075.3.sam SM10075.4.sam SM10075.5.sam SM10075.6.sam SM10075.7.sam SM10075.8.sam SM10075.9.sam: gatk_split_align SM10075.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10075.sam
SM10005.0.sam SM10005.1.sam SM10005.2.sam SM10005.3.sam SM10005.4.sam SM10005.5.sam SM10005.6.sam SM10005.7.sam SM10005.8.sam SM10005.9.sam: gatk_split_align SM10005.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10005.sam
SM10018.0.sam SM10018.1.sam SM10018.2.sam SM10018.3.sam SM10018.4.sam SM10018.5.sam SM10018.6.sam SM10018.7.sam SM10018.8.sam SM10018.9.sam: gatk_split_align SM10018.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10018.sam
SM10028.0.sam SM10028.1.sam SM10028.2.sam SM10028.3.sam SM10028.4.sam SM10028.5.sam SM10028.6.sam SM10028.7.sam SM10028.8.sam SM10028.9.sam: gatk_split_align SM10028.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10028.sam
SM10040.0.sam SM10040.1.sam SM10040.2.sam SM10040.3.sam SM10040.4.sam SM10040.5.sam SM10040.6.sam SM10040.7.sam SM10040.8.sam SM10040.9.sam: gatk_split_align SM10040.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10040.sam
SM10050.0.sam SM10050.1.sam SM10050.2.sam SM10050.3.sam SM10050.4.sam SM10050.5.sam SM10050.6.sam SM10050.7.sam SM10050.8.sam SM10050.9.sam: gatk_split_align SM10050.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10050.sam
SM10076.0.sam SM10076.1.sam SM10076.2.sam SM10076.3.sam SM10076.4.sam SM10076.5.sam SM10076.6.sam SM10076.7.sam SM10076.8.sam SM10076.9.sam: gatk_split_align SM10076.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10076.sam
SM10006.0.sam SM10006.1.sam SM10006.2.sam SM10006.3.sam SM10006.4.sam SM10006.5.sam SM10006.6.sam SM10006.7.sam SM10006.8.sam SM10006.9.sam: gatk_split_align SM10006.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10006.sam
SM10019.0.sam SM10019.1.sam SM10019.2.sam SM10019.3.sam SM10019.4.sam SM10019.5.sam SM10019.6.sam SM10019.7.sam SM10019.8.sam SM10019.9.sam: gatk_split_align SM10019.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10019.sam
SM10029.0.sam SM10029.1.sam SM10029.2.sam SM10029.3.sam SM10029.4.sam SM10029.5.sam SM10029.6.sam SM10029.7.sam SM10029.8.sam SM10029.9.sam: gatk_split_align SM10029.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10029.sam
SM10041.0.sam SM10041.1.sam SM10041.2.sam SM10041.3.sam SM10041.4.sam SM10041.5.sam SM10041.6.sam SM10041.7.sam SM10041.8.sam SM10041.9.sam: gatk_split_align SM10041.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10041.sam
SM10051.0.sam SM10051.1.sam SM10051.2.sam SM10051.3.sam SM10051.4.sam SM10051.5.sam SM10051.6.sam SM10051.7.sam SM10051.8.sam SM10051.9.sam: gatk_split_align SM10051.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10051.sam
SM10077.0.sam SM10077.1.sam SM10077.2.sam SM10077.3.sam SM10077.4.sam SM10077.5.sam SM10077.6.sam SM10077.7.sam SM10077.8.sam SM10077.9.sam: gatk_split_align SM10077.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10077.sam
SM10007.0.sam SM10007.1.sam SM10007.2.sam SM10007.3.sam SM10007.4.sam SM10007.5.sam SM10007.6.sam SM10007.7.sam SM10007.8.sam SM10007.9.sam: gatk_split_align SM10007.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10007.sam
SM10021.0.sam SM10021.1.sam SM10021.2.sam SM10021.3.sam SM10021.4.sam SM10021.5.sam SM10021.6.sam SM10021.7.sam SM10021.8.sam SM10021.9.sam: gatk_split_align SM10021.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10021.sam
SM10030.0.sam SM10030.1.sam SM10030.2.sam SM10030.3.sam SM10030.4.sam SM10030.5.sam SM10030.6.sam SM10030.7.sam SM10030.8.sam SM10030.9.sam: gatk_split_align SM10030.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10030.sam
SM10042.0.sam SM10042.1.sam SM10042.2.sam SM10042.3.sam SM10042.4.sam SM10042.5.sam SM10042.6.sam SM10042.7.sam SM10042.8.sam SM10042.9.sam: gatk_split_align SM10042.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10042.sam
SM10060.0.sam SM10060.1.sam SM10060.2.sam SM10060.3.sam SM10060.4.sam SM10060.5.sam SM10060.6.sam SM10060.7.sam SM10060.8.sam SM10060.9.sam: gatk_split_align SM10060.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10060.sam
SM10078.0.sam SM10078.1.sam SM10078.2.sam SM10078.3.sam SM10078.4.sam SM10078.5.sam SM10078.6.sam SM10078.7.sam SM10078.8.sam SM10078.9.sam: gatk_split_align SM10078.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10078.sam
SM10009.0.sam SM10009.1.sam SM10009.2.sam SM10009.3.sam SM10009.4.sam SM10009.5.sam SM10009.6.sam SM10009.7.sam SM10009.8.sam SM10009.9.sam: gatk_split_align SM10009.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10009.sam
SM10023.0.sam SM10023.1.sam SM10023.2.sam SM10023.3.sam SM10023.4.sam SM10023.5.sam SM10023.6.sam SM10023.7.sam SM10023.8.sam SM10023.9.sam: gatk_split_align SM10023.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10023.sam
SM10031.0.sam SM10031.1.sam SM10031.2.sam SM10031.3.sam SM10031.4.sam SM10031.5.sam SM10031.6.sam SM10031.7.sam SM10031.8.sam SM10031.9.sam: gatk_split_align SM10031.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10031.sam
SM10044.0.sam SM10044.1.sam SM10044.2.sam SM10044.3.sam SM10044.4.sam SM10044.5.sam SM10044.6.sam SM10044.7.sam SM10044.8.sam SM10044.9.sam: gatk_split_align SM10044.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10044.sam
SM10061.0.sam SM10061.1.sam SM10061.2.sam SM10061.3.sam SM10061.4.sam SM10061.5.sam SM10061.6.sam SM10061.7.sam SM10061.8.sam SM10061.9.sam: gatk_split_align SM10061.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10061.sam
SM10079.0.sam SM10079.1.sam SM10079.2.sam SM10079.3.sam SM10079.4.sam SM10079.5.sam SM10079.6.sam SM10079.7.sam SM10079.8.sam SM10079.9.sam: gatk_split_align SM10079.sam oak2.fa
perl gatk_split_align 40000 oak2.fa SM10079.sam
SM10001.0.bam: samtools SM10001.0.sam
./samtools view -bS SM10001.0.sam > SM10001.0.bam
SM10001.1.bam: samtools SM10001.1.sam
./samtools view -bS SM10001.1.sam > SM10001.1.bam
SM10001.2.bam: samtools SM10001.2.sam
./samtools view -bS SM10001.2.sam > SM10001.2.bam
SM10001.3.bam: samtools SM10001.3.sam
./samtools view -bS SM10001.3.sam > SM10001.3.bam
SM10001.4.bam: samtools SM10001.4.sam
./samtools view -bS SM10001.4.sam > SM10001.4.bam
SM10001.5.bam: samtools SM10001.5.sam
./samtools view -bS SM10001.5.sam > SM10001.5.bam
SM10001.6.bam: samtools SM10001.6.sam
./samtools view -bS SM10001.6.sam > SM10001.6.bam
SM10001.7.bam: samtools SM10001.7.sam
./samtools view -bS SM10001.7.sam > SM10001.7.bam
SM10001.8.bam: samtools SM10001.8.sam
./samtools view -bS SM10001.8.sam > SM10001.8.bam
SM10001.9.bam: samtools SM10001.9.sam
./samtools view -bS SM10001.9.sam > SM10001.9.bam
SM10012.0.bam: samtools SM10012.0.sam
./samtools view -bS SM10012.0.sam > SM10012.0.bam
SM10012.1.bam: samtools SM10012.1.sam
./samtools view -bS SM10012.1.sam > SM10012.1.bam
SM10012.2.bam: samtools SM10012.2.sam
./samtools view -bS SM10012.2.sam > SM10012.2.bam
SM10012.3.bam: samtools SM10012.3.sam
./samtools view -bS SM10012.3.sam > SM10012.3.bam
SM10012.4.bam: samtools SM10012.4.sam
./samtools view -bS SM10012.4.sam > SM10012.4.bam
SM10012.5.bam: samtools SM10012.5.sam
./samtools view -bS SM10012.5.sam > SM10012.5.bam
SM10012.6.bam: samtools SM10012.6.sam
./samtools view -bS SM10012.6.sam > SM10012.6.bam
SM10012.7.bam: samtools SM10012.7.sam
./samtools view -bS SM10012.7.sam > SM10012.7.bam
SM10012.8.bam: samtools SM10012.8.sam
./samtools view -bS SM10012.8.sam > SM10012.8.bam
SM10012.9.bam: samtools SM10012.9.sam
./samtools view -bS SM10012.9.sam > SM10012.9.bam
SM10024.0.bam: samtools SM10024.0.sam
./samtools view -bS SM10024.0.sam > SM10024.0.bam
SM10024.1.bam: samtools SM10024.1.sam
./samtools view -bS SM10024.1.sam > SM10024.1.bam
SM10024.2.bam: samtools SM10024.2.sam
./samtools view -bS SM10024.2.sam > SM10024.2.bam
SM10024.3.bam: samtools SM10024.3.sam
./samtools view -bS SM10024.3.sam > SM10024.3.bam
SM10024.4.bam: samtools SM10024.4.sam
./samtools view -bS SM10024.4.sam > SM10024.4.bam
SM10024.5.bam: samtools SM10024.5.sam
./samtools view -bS SM10024.5.sam > SM10024.5.bam
SM10024.6.bam: samtools SM10024.6.sam
./samtools view -bS SM10024.6.sam > SM10024.6.bam
SM10024.7.bam: samtools SM10024.7.sam
./samtools view -bS SM10024.7.sam > SM10024.7.bam
SM10024.8.bam: samtools SM10024.8.sam
./samtools view -bS SM10024.8.sam > SM10024.8.bam
SM10024.9.bam: samtools SM10024.9.sam
./samtools view -bS SM10024.9.sam > SM10024.9.bam
SM10034.0.bam: samtools SM10034.0.sam
./samtools view -bS SM10034.0.sam > SM10034.0.bam
SM10034.1.bam: samtools SM10034.1.sam
./samtools view -bS SM10034.1.sam > SM10034.1.bam
SM10034.2.bam: samtools SM10034.2.sam
./samtools view -bS SM10034.2.sam > SM10034.2.bam
SM10034.3.bam: samtools SM10034.3.sam
./samtools view -bS SM10034.3.sam > SM10034.3.bam
SM10034.4.bam: samtools SM10034.4.sam
./samtools view -bS SM10034.4.sam > SM10034.4.bam
SM10034.5.bam: samtools SM10034.5.sam
./samtools view -bS SM10034.5.sam > SM10034.5.bam
SM10034.6.bam: samtools SM10034.6.sam
./samtools view -bS SM10034.6.sam > SM10034.6.bam
SM10034.7.bam: samtools SM10034.7.sam
./samtools view -bS SM10034.7.sam > SM10034.7.bam
SM10034.8.bam: samtools SM10034.8.sam
./samtools view -bS SM10034.8.sam > SM10034.8.bam
SM10034.9.bam: samtools SM10034.9.sam
./samtools view -bS SM10034.9.sam > SM10034.9.bam
SM10045.0.bam: samtools SM10045.0.sam
./samtools view -bS SM10045.0.sam > SM10045.0.bam
SM10045.1.bam: samtools SM10045.1.sam
./samtools view -bS SM10045.1.sam > SM10045.1.bam
SM10045.2.bam: samtools SM10045.2.sam
./samtools view -bS SM10045.2.sam > SM10045.2.bam
SM10045.3.bam: samtools SM10045.3.sam
./samtools view -bS SM10045.3.sam > SM10045.3.bam
SM10045.4.bam: samtools SM10045.4.sam
./samtools view -bS SM10045.4.sam > SM10045.4.bam
SM10045.5.bam: samtools SM10045.5.sam
./samtools view -bS SM10045.5.sam > SM10045.5.bam
SM10045.6.bam: samtools SM10045.6.sam
./samtools view -bS SM10045.6.sam > SM10045.6.bam
SM10045.7.bam: samtools SM10045.7.sam
./samtools view -bS SM10045.7.sam > SM10045.7.bam
SM10045.8.bam: samtools SM10045.8.sam
./samtools view -bS SM10045.8.sam > SM10045.8.bam
SM10045.9.bam: samtools SM10045.9.sam
./samtools view -bS SM10045.9.sam > SM10045.9.bam
SM10062.0.bam: samtools SM10062.0.sam
./samtools view -bS SM10062.0.sam > SM10062.0.bam
SM10062.1.bam: samtools SM10062.1.sam
./samtools view -bS SM10062.1.sam > SM10062.1.bam
SM10062.2.bam: samtools SM10062.2.sam
./samtools view -bS SM10062.2.sam > SM10062.2.bam
SM10062.3.bam: samtools SM10062.3.sam
./samtools view -bS SM10062.3.sam > SM10062.3.bam
SM10062.4.bam: samtools SM10062.4.sam
./samtools view -bS SM10062.4.sam > SM10062.4.bam
SM10062.5.bam: samtools SM10062.5.sam
./samtools view -bS SM10062.5.sam > SM10062.5.bam
SM10062.6.bam: samtools SM10062.6.sam
./samtools view -bS SM10062.6.sam > SM10062.6.bam
SM10062.7.bam: samtools SM10062.7.sam
./samtools view -bS SM10062.7.sam > SM10062.7.bam
SM10062.8.bam: samtools SM10062.8.sam
./samtools view -bS SM10062.8.sam > SM10062.8.bam
SM10062.9.bam: samtools SM10062.9.sam
./samtools view -bS SM10062.9.sam > SM10062.9.bam
SM10081.0.bam: samtools SM10081.0.sam
./samtools view -bS SM10081.0.sam > SM10081.0.bam
SM10081.1.bam: samtools SM10081.1.sam
./samtools view -bS SM10081.1.sam > SM10081.1.bam
SM10081.2.bam: samtools SM10081.2.sam
./samtools view -bS SM10081.2.sam > SM10081.2.bam
SM10081.3.bam: samtools SM10081.3.sam
./samtools view -bS SM10081.3.sam > SM10081.3.bam
SM10081.4.bam: samtools SM10081.4.sam
./samtools view -bS SM10081.4.sam > SM10081.4.bam
SM10081.5.bam: samtools SM10081.5.sam
./samtools view -bS SM10081.5.sam > SM10081.5.bam
SM10081.6.bam: samtools SM10081.6.sam
./samtools view -bS SM10081.6.sam > SM10081.6.bam
SM10081.7.bam: samtools SM10081.7.sam
./samtools view -bS SM10081.7.sam > SM10081.7.bam
SM10081.8.bam: samtools SM10081.8.sam
./samtools view -bS SM10081.8.sam > SM10081.8.bam
SM10081.9.bam: samtools SM10081.9.sam
./samtools view -bS SM10081.9.sam > SM10081.9.bam
SM10002.0.bam: samtools SM10002.0.sam
./samtools view -bS SM10002.0.sam > SM10002.0.bam
SM10002.1.bam: samtools SM10002.1.sam
./samtools view -bS SM10002.1.sam > SM10002.1.bam
SM10002.2.bam: samtools SM10002.2.sam
./samtools view -bS SM10002.2.sam > SM10002.2.bam
SM10002.3.bam: samtools SM10002.3.sam
./samtools view -bS SM10002.3.sam > SM10002.3.bam
SM10002.4.bam: samtools SM10002.4.sam
./samtools view -bS SM10002.4.sam > SM10002.4.bam
SM10002.5.bam: samtools SM10002.5.sam
./samtools view -bS SM10002.5.sam > SM10002.5.bam
SM10002.6.bam: samtools SM10002.6.sam
./samtools view -bS SM10002.6.sam > SM10002.6.bam
SM10002.7.bam: samtools SM10002.7.sam
./samtools view -bS SM10002.7.sam > SM10002.7.bam
SM10002.8.bam: samtools SM10002.8.sam
./samtools view -bS SM10002.8.sam > SM10002.8.bam
SM10002.9.bam: samtools SM10002.9.sam
./samtools view -bS SM10002.9.sam > SM10002.9.bam
SM10015.0.bam: samtools SM10015.0.sam
./samtools view -bS SM10015.0.sam > SM10015.0.bam
SM10015.1.bam: samtools SM10015.1.sam
./samtools view -bS SM10015.1.sam > SM10015.1.bam
SM10015.2.bam: samtools SM10015.2.sam
./samtools view -bS SM10015.2.sam > SM10015.2.bam
SM10015.3.bam: samtools SM10015.3.sam
./samtools view -bS SM10015.3.sam > SM10015.3.bam
SM10015.4.bam: samtools SM10015.4.sam
./samtools view -bS SM10015.4.sam > SM10015.4.bam
SM10015.5.bam: samtools SM10015.5.sam
./samtools view -bS SM10015.5.sam > SM10015.5.bam
SM10015.6.bam: samtools SM10015.6.sam
./samtools view -bS SM10015.6.sam > SM10015.6.bam
SM10015.7.bam: samtools SM10015.7.sam
./samtools view -bS SM10015.7.sam > SM10015.7.bam
SM10015.8.bam: samtools SM10015.8.sam
./samtools view -bS SM10015.8.sam > SM10015.8.bam
SM10015.9.bam: samtools SM10015.9.sam
./samtools view -bS SM10015.9.sam > SM10015.9.bam
SM10025.0.bam: samtools SM10025.0.sam
./samtools view -bS SM10025.0.sam > SM10025.0.bam
SM10025.1.bam: samtools SM10025.1.sam
./samtools view -bS SM10025.1.sam > SM10025.1.bam
SM10025.2.bam: samtools SM10025.2.sam
./samtools view -bS SM10025.2.sam > SM10025.2.bam
SM10025.3.bam: samtools SM10025.3.sam
./samtools view -bS SM10025.3.sam > SM10025.3.bam
SM10025.4.bam: samtools SM10025.4.sam
./samtools view -bS SM10025.4.sam > SM10025.4.bam
SM10025.5.bam: samtools SM10025.5.sam
./samtools view -bS SM10025.5.sam > SM10025.5.bam
SM10025.6.bam: samtools SM10025.6.sam
./samtools view -bS SM10025.6.sam > SM10025.6.bam
SM10025.7.bam: samtools SM10025.7.sam
./samtools view -bS SM10025.7.sam > SM10025.7.bam
SM10025.8.bam: samtools SM10025.8.sam
./samtools view -bS SM10025.8.sam > SM10025.8.bam
SM10025.9.bam: samtools SM10025.9.sam
./samtools view -bS SM10025.9.sam > SM10025.9.bam
SM10036.0.bam: samtools SM10036.0.sam
./samtools view -bS SM10036.0.sam > SM10036.0.bam
SM10036.1.bam: samtools SM10036.1.sam
./samtools view -bS SM10036.1.sam > SM10036.1.bam
SM10036.2.bam: samtools SM10036.2.sam
./samtools view -bS SM10036.2.sam > SM10036.2.bam
SM10036.3.bam: samtools SM10036.3.sam
./samtools view -bS SM10036.3.sam > SM10036.3.bam
SM10036.4.bam: samtools SM10036.4.sam
./samtools view -bS SM10036.4.sam > SM10036.4.bam
SM10036.5.bam: samtools SM10036.5.sam
./samtools view -bS SM10036.5.sam > SM10036.5.bam
SM10036.6.bam: samtools SM10036.6.sam
./samtools view -bS SM10036.6.sam > SM10036.6.bam
SM10036.7.bam: samtools SM10036.7.sam
./samtools view -bS SM10036.7.sam > SM10036.7.bam
SM10036.8.bam: samtools SM10036.8.sam
./samtools view -bS SM10036.8.sam > SM10036.8.bam
SM10036.9.bam: samtools SM10036.9.sam
./samtools view -bS SM10036.9.sam > SM10036.9.bam
SM10046.0.bam: samtools SM10046.0.sam
./samtools view -bS SM10046.0.sam > SM10046.0.bam
SM10046.1.bam: samtools SM10046.1.sam
./samtools view -bS SM10046.1.sam > SM10046.1.bam
SM10046.2.bam: samtools SM10046.2.sam
./samtools view -bS SM10046.2.sam > SM10046.2.bam
SM10046.3.bam: samtools SM10046.3.sam
./samtools view -bS SM10046.3.sam > SM10046.3.bam
SM10046.4.bam: samtools SM10046.4.sam
./samtools view -bS SM10046.4.sam > SM10046.4.bam
SM10046.5.bam: samtools SM10046.5.sam
./samtools view -bS SM10046.5.sam > SM10046.5.bam
SM10046.6.bam: samtools SM10046.6.sam
./samtools view -bS SM10046.6.sam > SM10046.6.bam
SM10046.7.bam: samtools SM10046.7.sam
./samtools view -bS SM10046.7.sam > SM10046.7.bam
SM10046.8.bam: samtools SM10046.8.sam
./samtools view -bS SM10046.8.sam > SM10046.8.bam
SM10046.9.bam: samtools SM10046.9.sam
./samtools view -bS SM10046.9.sam > SM10046.9.bam
SM10072.0.bam: samtools SM10072.0.sam
./samtools view -bS SM10072.0.sam > SM10072.0.bam
SM10072.1.bam: samtools SM10072.1.sam
./samtools view -bS SM10072.1.sam > SM10072.1.bam
SM10072.2.bam: samtools SM10072.2.sam
./samtools view -bS SM10072.2.sam > SM10072.2.bam
SM10072.3.bam: samtools SM10072.3.sam
./samtools view -bS SM10072.3.sam > SM10072.3.bam
SM10072.4.bam: samtools SM10072.4.sam
./samtools view -bS SM10072.4.sam > SM10072.4.bam
SM10072.5.bam: samtools SM10072.5.sam
./samtools view -bS SM10072.5.sam > SM10072.5.bam
SM10072.6.bam: samtools SM10072.6.sam
./samtools view -bS SM10072.6.sam > SM10072.6.bam
SM10072.7.bam: samtools SM10072.7.sam
./samtools view -bS SM10072.7.sam > SM10072.7.bam
SM10072.8.bam: samtools SM10072.8.sam
./samtools view -bS SM10072.8.sam > SM10072.8.bam
SM10072.9.bam: samtools SM10072.9.sam
./samtools view -bS SM10072.9.sam > SM10072.9.bam
SM10082.0.bam: samtools SM10082.0.sam
./samtools view -bS SM10082.0.sam > SM10082.0.bam
SM10082.1.bam: samtools SM10082.1.sam
./samtools view -bS SM10082.1.sam > SM10082.1.bam
SM10082.2.bam: samtools SM10082.2.sam
./samtools view -bS SM10082.2.sam > SM10082.2.bam
SM10082.3.bam: samtools SM10082.3.sam
./samtools view -bS SM10082.3.sam > SM10082.3.bam
SM10082.4.bam: samtools SM10082.4.sam
./samtools view -bS SM10082.4.sam > SM10082.4.bam
SM10082.5.bam: samtools SM10082.5.sam
./samtools view -bS SM10082.5.sam > SM10082.5.bam
SM10082.6.bam: samtools SM10082.6.sam
./samtools view -bS SM10082.6.sam > SM10082.6.bam
SM10082.7.bam: samtools SM10082.7.sam
./samtools view -bS SM10082.7.sam > SM10082.7.bam
SM10082.8.bam: samtools SM10082.8.sam
./samtools view -bS SM10082.8.sam > SM10082.8.bam
SM10082.9.bam: samtools SM10082.9.sam
./samtools view -bS SM10082.9.sam > SM10082.9.bam
SM10003.0.bam: samtools SM10003.0.sam
./samtools view -bS SM10003.0.sam > SM10003.0.bam
SM10003.1.bam: samtools SM10003.1.sam
./samtools view -bS SM10003.1.sam > SM10003.1.bam
SM10003.2.bam: samtools SM10003.2.sam
./samtools view -bS SM10003.2.sam > SM10003.2.bam
SM10003.3.bam: samtools SM10003.3.sam
./samtools view -bS SM10003.3.sam > SM10003.3.bam
SM10003.4.bam: samtools SM10003.4.sam
./samtools view -bS SM10003.4.sam > SM10003.4.bam
SM10003.5.bam: samtools SM10003.5.sam
./samtools view -bS SM10003.5.sam > SM10003.5.bam
SM10003.6.bam: samtools SM10003.6.sam
./samtools view -bS SM10003.6.sam > SM10003.6.bam
SM10003.7.bam: samtools SM10003.7.sam
./samtools view -bS SM10003.7.sam > SM10003.7.bam
SM10003.8.bam: samtools SM10003.8.sam
./samtools view -bS SM10003.8.sam > SM10003.8.bam
SM10003.9.bam: samtools SM10003.9.sam
./samtools view -bS SM10003.9.sam > SM10003.9.bam
SM10016.0.bam: samtools SM10016.0.sam
./samtools view -bS SM10016.0.sam > SM10016.0.bam
SM10016.1.bam: samtools SM10016.1.sam
./samtools view -bS SM10016.1.sam > SM10016.1.bam
SM10016.2.bam: samtools SM10016.2.sam
./samtools view -bS SM10016.2.sam > SM10016.2.bam
SM10016.3.bam: samtools SM10016.3.sam
./samtools view -bS SM10016.3.sam > SM10016.3.bam
SM10016.4.bam: samtools SM10016.4.sam
./samtools view -bS SM10016.4.sam > SM10016.4.bam
SM10016.5.bam: samtools SM10016.5.sam
./samtools view -bS SM10016.5.sam > SM10016.5.bam
SM10016.6.bam: samtools SM10016.6.sam
./samtools view -bS SM10016.6.sam > SM10016.6.bam
SM10016.7.bam: samtools SM10016.7.sam
./samtools view -bS SM10016.7.sam > SM10016.7.bam
SM10016.8.bam: samtools SM10016.8.sam
./samtools view -bS SM10016.8.sam > SM10016.8.bam
SM10016.9.bam: samtools SM10016.9.sam
./samtools view -bS SM10016.9.sam > SM10016.9.bam
SM10026.0.bam: samtools SM10026.0.sam
./samtools view -bS SM10026.0.sam > SM10026.0.bam
SM10026.1.bam: samtools SM10026.1.sam
./samtools view -bS SM10026.1.sam > SM10026.1.bam
SM10026.2.bam: samtools SM10026.2.sam
./samtools view -bS SM10026.2.sam > SM10026.2.bam
SM10026.3.bam: samtools SM10026.3.sam
./samtools view -bS SM10026.3.sam > SM10026.3.bam
SM10026.4.bam: samtools SM10026.4.sam
./samtools view -bS SM10026.4.sam > SM10026.4.bam
SM10026.5.bam: samtools SM10026.5.sam
./samtools view -bS SM10026.5.sam > SM10026.5.bam
SM10026.6.bam: samtools SM10026.6.sam
./samtools view -bS SM10026.6.sam > SM10026.6.bam
SM10026.7.bam: samtools SM10026.7.sam
./samtools view -bS SM10026.7.sam > SM10026.7.bam
SM10026.8.bam: samtools SM10026.8.sam
./samtools view -bS SM10026.8.sam > SM10026.8.bam
SM10026.9.bam: samtools SM10026.9.sam
./samtools view -bS SM10026.9.sam > SM10026.9.bam
SM10037.0.bam: samtools SM10037.0.sam
./samtools view -bS SM10037.0.sam > SM10037.0.bam
SM10037.1.bam: samtools SM10037.1.sam
./samtools view -bS SM10037.1.sam > SM10037.1.bam
SM10037.2.bam: samtools SM10037.2.sam
./samtools view -bS SM10037.2.sam > SM10037.2.bam
SM10037.3.bam: samtools SM10037.3.sam
./samtools view -bS SM10037.3.sam > SM10037.3.bam
SM10037.4.bam: samtools SM10037.4.sam
./samtools view -bS SM10037.4.sam > SM10037.4.bam
SM10037.5.bam: samtools SM10037.5.sam
./samtools view -bS SM10037.5.sam > SM10037.5.bam
SM10037.6.bam: samtools SM10037.6.sam
./samtools view -bS SM10037.6.sam > SM10037.6.bam
SM10037.7.bam: samtools SM10037.7.sam
./samtools view -bS SM10037.7.sam > SM10037.7.bam
SM10037.8.bam: samtools SM10037.8.sam
./samtools view -bS SM10037.8.sam > SM10037.8.bam
SM10037.9.bam: samtools SM10037.9.sam
./samtools view -bS SM10037.9.sam > SM10037.9.bam
SM10048.0.bam: samtools SM10048.0.sam
./samtools view -bS SM10048.0.sam > SM10048.0.bam
SM10048.1.bam: samtools SM10048.1.sam
./samtools view -bS SM10048.1.sam > SM10048.1.bam
SM10048.2.bam: samtools SM10048.2.sam
./samtools view -bS SM10048.2.sam > SM10048.2.bam
SM10048.3.bam: samtools SM10048.3.sam
./samtools view -bS SM10048.3.sam > SM10048.3.bam
SM10048.4.bam: samtools SM10048.4.sam
./samtools view -bS SM10048.4.sam > SM10048.4.bam
SM10048.5.bam: samtools SM10048.5.sam
./samtools view -bS SM10048.5.sam > SM10048.5.bam
SM10048.6.bam: samtools SM10048.6.sam
./samtools view -bS SM10048.6.sam > SM10048.6.bam
SM10048.7.bam: samtools SM10048.7.sam
./samtools view -bS SM10048.7.sam > SM10048.7.bam
SM10048.8.bam: samtools SM10048.8.sam
./samtools view -bS SM10048.8.sam > SM10048.8.bam
SM10048.9.bam: samtools SM10048.9.sam
./samtools view -bS SM10048.9.sam > SM10048.9.bam
SM10074.0.bam: samtools SM10074.0.sam
./samtools view -bS SM10074.0.sam > SM10074.0.bam
SM10074.1.bam: samtools SM10074.1.sam
./samtools view -bS SM10074.1.sam > SM10074.1.bam
SM10074.2.bam: samtools SM10074.2.sam
./samtools view -bS SM10074.2.sam > SM10074.2.bam
SM10074.3.bam: samtools SM10074.3.sam
./samtools view -bS SM10074.3.sam > SM10074.3.bam
SM10074.4.bam: samtools SM10074.4.sam
./samtools view -bS SM10074.4.sam > SM10074.4.bam
SM10074.5.bam: samtools SM10074.5.sam
./samtools view -bS SM10074.5.sam > SM10074.5.bam
SM10074.6.bam: samtools SM10074.6.sam
./samtools view -bS SM10074.6.sam > SM10074.6.bam
SM10074.7.bam: samtools SM10074.7.sam
./samtools view -bS SM10074.7.sam > SM10074.7.bam
SM10074.8.bam: samtools SM10074.8.sam
./samtools view -bS SM10074.8.sam > SM10074.8.bam
SM10074.9.bam: samtools SM10074.9.sam
./samtools view -bS SM10074.9.sam > SM10074.9.bam
SM10004.0.bam: samtools SM10004.0.sam
./samtools view -bS SM10004.0.sam > SM10004.0.bam
SM10004.1.bam: samtools SM10004.1.sam
./samtools view -bS SM10004.1.sam > SM10004.1.bam
SM10004.2.bam: samtools SM10004.2.sam
./samtools view -bS SM10004.2.sam > SM10004.2.bam
SM10004.3.bam: samtools SM10004.3.sam
./samtools view -bS SM10004.3.sam > SM10004.3.bam
SM10004.4.bam: samtools SM10004.4.sam
./samtools view -bS SM10004.4.sam > SM10004.4.bam
SM10004.5.bam: samtools SM10004.5.sam
./samtools view -bS SM10004.5.sam > SM10004.5.bam
SM10004.6.bam: samtools SM10004.6.sam
./samtools view -bS SM10004.6.sam > SM10004.6.bam
SM10004.7.bam: samtools SM10004.7.sam
./samtools view -bS SM10004.7.sam > SM10004.7.bam
SM10004.8.bam: samtools SM10004.8.sam
./samtools view -bS SM10004.8.sam > SM10004.8.bam
SM10004.9.bam: samtools SM10004.9.sam
./samtools view -bS SM10004.9.sam > SM10004.9.bam
SM10017.0.bam: samtools SM10017.0.sam
./samtools view -bS SM10017.0.sam > SM10017.0.bam
SM10017.1.bam: samtools SM10017.1.sam
./samtools view -bS SM10017.1.sam > SM10017.1.bam
SM10017.2.bam: samtools SM10017.2.sam
./samtools view -bS SM10017.2.sam > SM10017.2.bam
SM10017.3.bam: samtools SM10017.3.sam
./samtools view -bS SM10017.3.sam > SM10017.3.bam
SM10017.4.bam: samtools SM10017.4.sam
./samtools view -bS SM10017.4.sam > SM10017.4.bam
SM10017.5.bam: samtools SM10017.5.sam
./samtools view -bS SM10017.5.sam > SM10017.5.bam
SM10017.6.bam: samtools SM10017.6.sam
./samtools view -bS SM10017.6.sam > SM10017.6.bam
SM10017.7.bam: samtools SM10017.7.sam
./samtools view -bS SM10017.7.sam > SM10017.7.bam
SM10017.8.bam: samtools SM10017.8.sam
./samtools view -bS SM10017.8.sam > SM10017.8.bam
SM10017.9.bam: samtools SM10017.9.sam
./samtools view -bS SM10017.9.sam > SM10017.9.bam
SM10027.0.bam: samtools SM10027.0.sam
./samtools view -bS SM10027.0.sam > SM10027.0.bam
SM10027.1.bam: samtools SM10027.1.sam
./samtools view -bS SM10027.1.sam > SM10027.1.bam
SM10027.2.bam: samtools SM10027.2.sam
./samtools view -bS SM10027.2.sam > SM10027.2.bam
SM10027.3.bam: samtools SM10027.3.sam
./samtools view -bS SM10027.3.sam > SM10027.3.bam
SM10027.4.bam: samtools SM10027.4.sam
./samtools view -bS SM10027.4.sam > SM10027.4.bam
SM10027.5.bam: samtools SM10027.5.sam
./samtools view -bS SM10027.5.sam > SM10027.5.bam
SM10027.6.bam: samtools SM10027.6.sam
./samtools view -bS SM10027.6.sam > SM10027.6.bam
SM10027.7.bam: samtools SM10027.7.sam
./samtools view -bS SM10027.7.sam > SM10027.7.bam
SM10027.8.bam: samtools SM10027.8.sam
./samtools view -bS SM10027.8.sam > SM10027.8.bam
SM10027.9.bam: samtools SM10027.9.sam
./samtools view -bS SM10027.9.sam > SM10027.9.bam
SM10039.0.bam: samtools SM10039.0.sam
./samtools view -bS SM10039.0.sam > SM10039.0.bam
SM10039.1.bam: samtools SM10039.1.sam
./samtools view -bS SM10039.1.sam > SM10039.1.bam
SM10039.2.bam: samtools SM10039.2.sam
./samtools view -bS SM10039.2.sam > SM10039.2.bam
SM10039.3.bam: samtools SM10039.3.sam
./samtools view -bS SM10039.3.sam > SM10039.3.bam
SM10039.4.bam: samtools SM10039.4.sam
./samtools view -bS SM10039.4.sam > SM10039.4.bam
SM10039.5.bam: samtools SM10039.5.sam
./samtools view -bS SM10039.5.sam > SM10039.5.bam
SM10039.6.bam: samtools SM10039.6.sam
./samtools view -bS SM10039.6.sam > SM10039.6.bam
SM10039.7.bam: samtools SM10039.7.sam
./samtools view -bS SM10039.7.sam > SM10039.7.bam
SM10039.8.bam: samtools SM10039.8.sam
./samtools view -bS SM10039.8.sam > SM10039.8.bam
SM10039.9.bam: samtools SM10039.9.sam
./samtools view -bS SM10039.9.sam > SM10039.9.bam
SM10049.0.bam: samtools SM10049.0.sam
./samtools view -bS SM10049.0.sam > SM10049.0.bam
SM10049.1.bam: samtools SM10049.1.sam
./samtools view -bS SM10049.1.sam > SM10049.1.bam
SM10049.2.bam: samtools SM10049.2.sam
./samtools view -bS SM10049.2.sam > SM10049.2.bam
SM10049.3.bam: samtools SM10049.3.sam
./samtools view -bS SM10049.3.sam > SM10049.3.bam
SM10049.4.bam: samtools SM10049.4.sam
./samtools view -bS SM10049.4.sam > SM10049.4.bam
SM10049.5.bam: samtools SM10049.5.sam
./samtools view -bS SM10049.5.sam > SM10049.5.bam
SM10049.6.bam: samtools SM10049.6.sam
./samtools view -bS SM10049.6.sam > SM10049.6.bam
SM10049.7.bam: samtools SM10049.7.sam
./samtools view -bS SM10049.7.sam > SM10049.7.bam
SM10049.8.bam: samtools SM10049.8.sam
./samtools view -bS SM10049.8.sam > SM10049.8.bam
SM10049.9.bam: samtools SM10049.9.sam
./samtools view -bS SM10049.9.sam > SM10049.9.bam
SM10075.0.bam: samtools SM10075.0.sam
./samtools view -bS SM10075.0.sam > SM10075.0.bam
SM10075.1.bam: samtools SM10075.1.sam
./samtools view -bS SM10075.1.sam > SM10075.1.bam
SM10075.2.bam: samtools SM10075.2.sam
./samtools view -bS SM10075.2.sam > SM10075.2.bam
SM10075.3.bam: samtools SM10075.3.sam
./samtools view -bS SM10075.3.sam > SM10075.3.bam
SM10075.4.bam: samtools SM10075.4.sam
./samtools view -bS SM10075.4.sam > SM10075.4.bam
SM10075.5.bam: samtools SM10075.5.sam
./samtools view -bS SM10075.5.sam > SM10075.5.bam
SM10075.6.bam: samtools SM10075.6.sam
./samtools view -bS SM10075.6.sam > SM10075.6.bam
SM10075.7.bam: samtools SM10075.7.sam
./samtools view -bS SM10075.7.sam > SM10075.7.bam
SM10075.8.bam: samtools SM10075.8.sam
./samtools view -bS SM10075.8.sam > SM10075.8.bam
SM10075.9.bam: samtools SM10075.9.sam
./samtools view -bS SM10075.9.sam > SM10075.9.bam
SM10005.0.bam: samtools SM10005.0.sam
./samtools view -bS SM10005.0.sam > SM10005.0.bam
SM10005.1.bam: samtools SM10005.1.sam
./samtools view -bS SM10005.1.sam > SM10005.1.bam
SM10005.2.bam: samtools SM10005.2.sam
./samtools view -bS SM10005.2.sam > SM10005.2.bam
SM10005.3.bam: samtools SM10005.3.sam
./samtools view -bS SM10005.3.sam > SM10005.3.bam
SM10005.4.bam: samtools SM10005.4.sam
./samtools view -bS SM10005.4.sam > SM10005.4.bam
SM10005.5.bam: samtools SM10005.5.sam
./samtools view -bS SM10005.5.sam > SM10005.5.bam
SM10005.6.bam: samtools SM10005.6.sam
./samtools view -bS SM10005.6.sam > SM10005.6.bam
SM10005.7.bam: samtools SM10005.7.sam
./samtools view -bS SM10005.7.sam > SM10005.7.bam
SM10005.8.bam: samtools SM10005.8.sam
./samtools view -bS SM10005.8.sam > SM10005.8.bam
SM10005.9.bam: samtools SM10005.9.sam
./samtools view -bS SM10005.9.sam > SM10005.9.bam
SM10018.0.bam: samtools SM10018.0.sam
./samtools view -bS SM10018.0.sam > SM10018.0.bam
SM10018.1.bam: samtools SM10018.1.sam
./samtools view -bS SM10018.1.sam > SM10018.1.bam
SM10018.2.bam: samtools SM10018.2.sam
./samtools view -bS SM10018.2.sam > SM10018.2.bam