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I encountered an error while running FMRIPrep on a cluster. It appears that FreeSurfer attempted to open a file named rh.sphere.reg, but this file is missing. This issue has been observed in two separate subjects.
details for job.txt are as follows
SUBJECTS_DIR /output/sourcedata/freesurfer
FREESURFER_HOME /opt/freesurfer
Loading source label.
Found 3962 points in source label.
Starting surface-based mapping
Reading source registration
/output/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg
error: No such file or directory
error: MRISread(/output/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg): could not open file�
ERROR: could not read /output/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg
Linux lm3-w045.cluster 3.10.0-1160.71.1.el7.x86_64 #1 SMP Tue Jun 28 15:37:28 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-04 exited with ERRORS at Fri Nov 3 12:59:16 CET 2023
For more details, see the log file /output/sourcedata/freesurfer/sub-04/scripts/recon-all-rh.log
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Stderr:
Traceback:
RuntimeError: subprocess exited with code 1.
231103-12:59:21,780 cli ERROR:
Preprocessing did not finish successfully. Errors occurred while processing data from participants: 04 (1). Check the HTML reports for details.
231103-13:03:11,40 nipype.workflow INFO:
[Node] Finished "_parcstats0", elapsed time 314.132945s.
The text was updated successfully, but these errors were encountered:
I encountered an error while running FMRIPrep on a cluster. It appears that FreeSurfer attempted to open a file named rh.sphere.reg, but this file is missing. This issue has been observed in two separate subjects.
details for job.txt are as follows
The text was updated successfully, but these errors were encountered: