Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Changing Search (and DB creation) method #65

Open
Ahmed-Shibl opened this issue Sep 11, 2022 · 0 comments
Open

Changing Search (and DB creation) method #65

Ahmed-Shibl opened this issue Sep 11, 2022 · 0 comments

Comments

@Ahmed-Shibl
Copy link

Hi! thanks for this software! really excited to give it a go.

I'm currently in the database creation step (it's taking long so thanks for the warning!) and it seems to be running fine so far. The only thing is that I initially used the blast option as the search method, as follows:
microbeannotator_db_builder -d microbeannotator -m blast -t $(nproc)

I would now rather use the diamond option so I wanted to ask which step number I should use to re-run the database creation command (please see below), Step 12. Create SQLite annotation DB or Step 14. Create method/tool-specific DBs?

microbeannotator_db_builder -d microbeannotator -m diamond --step 12 -t $(nproc)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant