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MicrobeAnnotator running error #66

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17863952296 opened this issue Sep 14, 2022 · 2 comments
Open

MicrobeAnnotator running error #66

17863952296 opened this issue Sep 14, 2022 · 2 comments

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@17863952296
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2022-09-14 14:48:57,256 [INFO]: ---- This is MicrobeAnnotator v2.0.4 ----
2022-09-14 14:48:57,256 [INFO]: Validating user inputs
2022-09-14 14:48:57,261 [INFO]: Passed
2022-09-14 14:48:57,261 [INFO]: Processing 1 files. I will run 1 files in parallel with 12 threads per file.
2022-09-14 14:48:57,292 [INFO]: Restarting from last checkpoint
Traceback (most recent call last):
File "/usr/local/bin/microbeannotator", line 981, in
main()
File "/usr/local/bin/microbeannotator", line 299, in main
with open(process_log_folder / "log.txt", 'r') as logfile:
FileNotFoundError: [Errno 2] No such file or directory: 'results/process_log/log.txt'
how to solve it? please,please,please

@bloomarun
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What was the output folder that you directed microbeannotator to write results? Do you have read/write permissions to that particular folder?

@zshivji
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zshivji commented Feb 1, 2024

I am having the same problem (process_log folder is empty) and do have read/write permissions enabled for the folder.

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3 participants