We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi,
Error getting after the 12th
Excecuting the command below microbeannotator_db_builder -d /scratch/jr5241/microbeannotator -m diamond -t 1 --no_aspera --step 12 --keep
2022-09-19 22:52:54,420 [INFO]: Merging annotations into SQLite database. 2022-09-19 22:52:54,424 [INFO]: Creating RefSeq table 2022-09-19 22:53:18,123 [INFO]: Finished 2022-09-19 22:53:18,147 [INFO]: Creating TrEMBL table 2022-09-20 01:34:25,320 [INFO]: Finished 2022-09-20 01:34:25,445 [INFO]: Parsing RefSeq KO numbers 2022-09-20 01:37:48,175 [INFO]: Finished 2022-09-20 01:37:48,175 [INFO]: Creating RefSeq table Traceback (most recent call last): File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 445, in <module> main() File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 437, in main single_step, aspera, keep_temp, bin_path) File "/scratch/jr5241/conda-envs/microbeannotar/bin/microbeannotator_db_builder", line 256, in database_duilder sqlite.create_refseq_table(sql_database, final_refseq_table) File "/scratch/jr5241/conda-envs/microbeannotar/lib/python3.7/site-packages/microbeannotator/database/sqlite3_database_builder.py", line 177, in create_refseq_table records.append((line[0], line[1], line[2], IndexError: list index out of range
Please advise .
The text was updated successfully, but these errors were encountered:
@suppakoko could you advise about this error?
Sorry, something went wrong.
No branches or pull requests
Hi,
Error getting after the 12th
Excecuting the command below
microbeannotator_db_builder -d /scratch/jr5241/microbeannotator -m diamond -t 1 --no_aspera --step 12 --keep
Please advise .
The text was updated successfully, but these errors were encountered: