diff --git a/examples/CTG_SampleSheet.csv b/examples/CTG_SampleSheet.csv index 21db48b..2f21196 100644 --- a/examples/CTG_SampleSheet.csv +++ b/examples/CTG_SampleSheet.csv @@ -28,12 +28,12 @@ sample-15,human,project8,n,n,n,atac,scatac-10x,n,n,n,n,n sample-16,human,project9,n,n,4,atac,scarc-10x,n,n,n,n,n sample-17,human,project9,n,n,4,gex,scarc-10x,n,n,n,n,n sample-18,human,project10,n,n,n,gex,scvisium-10x,cytaimage,darkimage,image,slide,slide_area -[10X_Flex_Settings],,,,,,,, +[FlexConfig_Data],,,,,,,, sample_id,probe_barcode,Sample_Source,,,,,, sample1,BC001|BC002,sample_7,,,,,, sample1,BC003|BC004,sample-8,,,,,, -[10X_FeatureReference],,,,,,,, -id,name,read,pattern,sequence,feature_type,Sample_Source,, +[FeatureReference_Data],,,,,,,, +id,name,read,pattern,sequence,feature_type,Sample_ID,, ADT_C0014,HuMs.CD11b,R2,5PNNNNNNNNNN(BC),TGAAGGCTCATTTGT,ADT,sample-4|sample-7,, ADT_C0073,HuMs.CD44,R2,5PNNNNNNNNNN(BC),TGGCTTCAGGTCCTA,ADT,sample-4|sample-7,, ADT_C0103,HuMs.CD45R_B220,R2,5P(BC),CCTACACCTCATAAT,ADT,sample-4|sample-7,, diff --git a/modules/split_sheet/main.nf b/modules/split_sheet/main.nf index db3b082..1424139 100644 --- a/modules/split_sheet/main.nf +++ b/modules/split_sheet/main.nf @@ -5,8 +5,8 @@ process SPLITSHEET { output: path "10X_Data.csv", emit: data path "Data.csv", emit: pipe_data, optional: true - path "10X_Flex_Settings.csv", emit: flex, optional: true - path "10X_FeatureReference.csv", emit: feature_reference, optional: true + path "FlexConfig_Data.csv", emit: flex, optional: true + path "FeatureReference_Data.csv", emit: feature_reference, optional: true shell: ''' while read line; do