v1.2.0

What's Changed

• CiteSeq samplesheet compatible with illumina v2 samplesheet by @Fattigman in #19

Full Changelog: v.1.1.0...v1.2.0

v1.1.0

What's Changed

• Add mqc for visium workflow by @Fattigman in #17
• CiteSeq works on sample level by @Fattigman in #18

Full Changelog: v1.0.3...v.1.1.0

v1.0.3

What's Changed

• added download button in manifest by @Fattigman in #7
• Add more docs by @Fattigman in #9
• module that converts cellranger output to mqc.yaml by @Fattigman in #10
• Add visium by @Fattigman in #12
• added spacecount to process config by @Fattigman in #13
• pipelines outputs are correctly collected by @Fattigman in #14
• corrected path to slidefiles by @Fattigman in #15
• Add visium documentation by @Fattigman in #16
• v1.0.3 by @Fattigman in #11

Full Changelog: v1.0.2...v1.0.3

v1.0.2 Release

What's new

• More documentations on workflows
• Processes are tagged for easier introspection
• Added download links for 10X references
• Some spring cleaning

What's Changed

• Add tags by @Fattigman in #6

Full Changelog: v1.0.1...v1.0.2

v1.0.1 Release

Notes

Projects are now delivered using the FINISH_PROJECTS workflow. This will

• Make future releases more stable
• Easier development of new workflows

What's Changed

• Streamline workflows by @Fattigman in #5

Full Changelog: v1.0.0...v1.0.1

v1.0.0 Release

First official release!

Available pipelines:

• scrna-10x (10X gene expression workflow)
• scflex-10x (10X rna flex workflow)
• scmulti-10x (10X feature barcode workflow)
• scciteseq-10x (10X + biolegend ADT, CrisprCapture, HTO workflow)
• scatac-10x ( 10X chromatin workflow)
• scarc-10x ( 10X chromatin + gex workflow )

software versions:

• cellranger v7.1.0
• cellranger-arc v2.0.2
• cellragner-atac v2.1.0
• fastqc v0.11.9
• multiqc v1.16 (dev branch)