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mkdocs.yml
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site_name: Guide for CWL in Earth Observation
theme:
name: material
palette:
- media: "(prefers-color-scheme: light)"
scheme: default
toggle:
icon: material/toggle-switch-off-outline
name: Switch to dark mode
- media: "(prefers-color-scheme: dark)"
scheme: slate
toggle:
icon: material/toggle-switch
name: Switch to light mode
markdown_extensions:
- admonition
- pymdownx.highlight
- def_list
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:pymdownx.superfences.fence_div_format
- pymdownx.snippets:
base_path: 'docs/'
plugins:
- search
- mermaid2
extra_css:
- https://unpkg.com/[email protected]/dist/mermaid.css
extra_javascript:
- https://unpkg.com/[email protected]/dist/mermaid.min.js
nav:
- Introduction: 'index.md'
- Requirements: requirements.md
- What you need to know:
- CWL 101: '101/cwl-101/cwl.md'
- YAML 101: '101/yaml.md'
- Containers 101: '101/containers.md'
- Tutorials:
- QuickWin: '101/cwl-101/tutorial-1/quickwin.md'
- Step-by-step:
- Your first CommandLineTool: '101/cwl-101/tutorial-2/command-line-tool.md'
- Your first Workflow: '101/cwl-101/tutorial-2/workflow.md'
- Slow pace:
- Bash script: '101/cwl-101/tutorial-3/bash-script.md'
- Writing the Tool Wrappers: '101/cwl-101/tutorial-3/tool-wrappers.md'
- Workflow composition: '101/cwl-101/tutorial-3/workflow-composition.md'
- Running and debugging: '101/cwl-101/tutorial-3/workflow-run.md'
- Processing multiple inputs: '101/cwl-101/tutorial-3/sub-workflow.md'
- SNAP:
- SNAP with CWL: 'snap/snap-cwl/snap-cwl.md'
- SNAP Graph as File: 'snap/snap-cwl/graph-as-a-file.md'
- SNAP Graph inline: 'snap/snap-cwl/graph-inline.md'
- OrfeoToolbox:
- Orfeo Toolbox 101: '101/orfeo-toolbox.md'
- BandMathX: otb/bandmathx/README.md
- BundleToPerfectSensor: otb/landsat-8-pan-sharpening/README.md
- Mosaic: otb/landsat-8-mosaic/README.md
- GDAL:
- GDAL 101: '101/gdal.md'
- gdal_translate: gdal/gdal_translate/README.md
- STAC:
- Introduction: stac/README.md
- Sentinel-2 asset resolution: stac/sentinel-2-asset-resolution/README.md
- How-to:
- CWL:
- How to return an output file: how-to/cwl-how-to/01-output/return-output-file.md
- How to capture the stdout: how-to/cwl-how-to/02-stdout/capture-stdout.md
- How to capture JSON stdout and re-use it: how-to/cwl-how-to/03-json-stdout/capture-json-stdout.md
- How to set environment variable: how-to/cwl-how-to/04-env/environment-variable.md
- How to create a file at runtime: how-to/cwl-how-to/05-runtime/create-file-at-runtime.md
- How to create nested workflows: how-to/cwl-how-to/06-nested-workflows/nested-workflow.md
- How to scatter on input parameters: how-to/cwl-how-to/07-scatter-workflows/scatter-input-parameters.md
# - How to scatter workflows: how-to/cwl-how-to/07-scatter-workflows/scatter-workflows.md
- How to create conditional workflows: how-to/cwl-how-to/08-conditional-workflows/conditional-workflows.md
- How to run inline Python code: how-to/cwl-how-to/09-inline-python/inline-python.md
- Sentinel-2:
- Sentinel-2 NBR: workflows/sentinel-2-nbr/README.md
- Landsat-8:
- Pan-sharpening with OTB: otb/landsat-8-pan-sharpening/README.md
- True color mosaic: otb/landsat-8-mosaic/README.md
- Reference:
- CWL Command Line Tool Description: reference/cwl-clt.md
- CWL Workflow Description: reference/cwl-workflow.md
- Explanation:
- SNAP: snap/101.md