From f0886b300434aa69e156b7e767c0a06790de7b56 Mon Sep 17 00:00:00 2001 From: Shantanu Singh Date: Tue, 5 Jul 2022 23:09:51 -0400 Subject: [PATCH 1/2] Update single_cell_analysis.Rmd --- vignettes/single_cell_analysis.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/vignettes/single_cell_analysis.Rmd b/vignettes/single_cell_analysis.Rmd index bfe0b66..dc425e4 100644 --- a/vignettes/single_cell_analysis.Rmd +++ b/vignettes/single_cell_analysis.Rmd @@ -25,7 +25,7 @@ summarizing them into per-well measurements by computing averages. This summarized data will later be used to predict mechanism-of-action of the compounds (see the `predict_moa` vignette.) -This vignette assumes that the single-cell data has been downloaded into `~/Downloads`. +This vignette assumes that the single-cell data has been downloaded into `~/Downloads`. ```{r libraries, message=FALSE} From 3ef4a71b71578e0ace452575aab036fa74d0d8cb Mon Sep 17 00:00:00 2001 From: Shantanu Singh Date: Wed, 20 Jul 2022 10:55:40 -0400 Subject: [PATCH 2/2] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index c0daa2c..44f02c3 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ Install [R](https://www.r-project.org) and [RStudio](https://www.rstudio.com/). -Download this [sqlite](https://s3.amazonaws.com/imaging-platform-collaborator/2016_09_09_cytominer_workshop/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`). +Download this [sqlite](https://cellpainting-gallery.s3.amazonaws.com/cpg0010-caie-drugresponse/broad-az/workspace/backend/ljosa_2013/analysis_batch_stable/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`). Install the `cytominergallery` package from GitHub: