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Update single_cell_analysis.Rmd
shntnu Jul 6, 2022
3ef4a71
Update README.md
shntnu Jul 20, 2022
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -6,7 +6,7 @@

Install [R](https://www.r-project.org) and [RStudio](https://www.rstudio.com/).

Download this [sqlite](https://s3.amazonaws.com/imaging-platform-collaborator/2016_09_09_cytominer_workshop/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`).
Download this [sqlite](https://cellpainting-gallery.s3.amazonaws.com/cpg0010-caie-drugresponse/broad-az/workspace/backend/ljosa_2013/analysis_batch_stable/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`).

Install the `cytominergallery` package from GitHub:

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2 changes: 1 addition & 1 deletion vignettes/single_cell_analysis.Rmd
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Expand Up @@ -25,7 +25,7 @@ summarizing them into per-well measurements by computing averages. This
summarized data will later be used to predict mechanism-of-action of the
compounds (see the `predict_moa` vignette.)

This vignette assumes that the single-cell data <https://s3.amazonaws.com/imaging-platform-collaborator/2016_09_09_cytominer_workshop/ljosa_jbiomolscreen_2013.sqlite> has been downloaded into `~/Downloads`.
This vignette assumes that the single-cell data <https://cellpainting-gallery.s3.amazonaws.com/cpg0010-caie-drugresponse/broad-az/workspace/backend/ljosa_2013/analysis_batch_stable/ljosa_jbiomolscreen_2013.sqlite> has been downloaded into `~/Downloads`.


```{r libraries, message=FALSE}
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