setup.cfg

[metadata]
name = smartem
version = 0.2.0
description = Tool to trace cryoEM SPA processing results through the magnification hierarchy provided by EPU
long_description = file: README.rst
license_file = LICENSE

[options]
include_package_data = True
install_requires =
    gemmi
    matplotlib
    xmltodict
    mrcfile
    pyyaml
    pandas
    plotly
    tifffile
packages = find:
package_dir =
    =src
python_requires = >=3.8
zip_safe = False

[options.package_data]
smartem = gui/qt/*.css

[options.extras_require]
db = 
    psycopg2 
    sqlalchemy < 2.0
old_vis = 
    PyQt5 
vis = 
    solara

[options.entry_points]
console_scripts = 
    smartem.launch = smartem.cli.launch:run
    smartem.init = smartem.cli.initialise:run
    smartem.start = smartem.cli.start:run
    smartem.stop = smartem.cli.stop:run
    smartem.missing = smartem.cli.missing:run
    smartem.export = smartem.cli.export:run
    smartem.change_epu_dir = smartem.cli.change_epu_directory:run
    smartem.quick_view = smartem.cli.quick_epu_viewer:run

[options.packages.find]
where = src

[flake8]
# Black disagrees with flake8 on a few points. Ignore those.
ignore = E203, E266, E501, W503

max-line-length = 88

select =
    E401,E711,E712,E713,E714,E721,E722,E901,
    F401,F402,F403,F405,F541,F631,F632,F633,F811,F812,F821,F822,F841,F901,
    W191,W291,W292,W293,W602,W603,W604,W605,W606,
    # flake8-comprehensions, https://github.com/adamchainz/flake8-comprehensions
    C4,