You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Thank you very much for making the code available. I followed the steps (except for using 2020AB instead of 2017AA) and after minimal change in code to avoid key lookup errors for missing CUIs) I successfully run the code.
I have done several tests with simple phrases including negated terms, but the pipeline does not skip them:
For example see below:
Thank you very much for making the code available. I followed the steps (except for using 2020AB instead of 2017AA) and after minimal change in code to avoid key lookup errors for missing CUIs) I successfully run the code.
I have done several tests with simple phrases including negated terms, but the pipeline does not skip them:
For example see below:
{'sentence': 'No voiding syndrome. No diarrhea or nausea. No abdominal pain. No other symptomatology of interest', 'tokens': ['No', 'voiding', 'syndrome.', 'No', 'diarrhea', 'or', 'nausea.', 'No', 'abdominal', 'pain.', 'No', 'other', 'symptomatology', 'of', 'interest'], 'spans': [{'start': 1, 'end': 3, 'text': 'voiding syndrome.', 'st': ('T038', 0.6669729688499156), 'cui': ('C0243095', 0.9999871)}, {'start': 3, 'end': 5, 'text': 'No diarrhea', 'st': ('T033', 0.99344856), 'cui': ('C0011991', 0.8528028654224417)}, {'start': 6, 'end': 7, 'text': 'nausea.', 'st': ('T033', 0.7728953), 'cui': ('C0243095', 0.99999225)}, {'start': 8, 'end': 10, 'text': 'abdominal pain.', 'st': ('T033', 0.92418957), 'cui': ('C0243095', 0.998923)}, {'start': 12, 'end': 13, 'text': 'symptomatology', 'st': ('T033', 0.9771756), 'cui': ('C1457887', 1.0)}]}
Will you include it in the future? Any hint?
Thanks again,
The text was updated successfully, but these errors were encountered: