From a0e5ef68e5d50f39802593bde03b6a3865bab11b Mon Sep 17 00:00:00 2001
From: jpsmith5 <jasonsmith@virginia.edu>
Date: Wed, 21 Jul 2021 13:59:43 -0400
Subject: [PATCH] add checkinstall section

---
 docs/detailed-install.md | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/docs/detailed-install.md b/docs/detailed-install.md
index e89f820..664a96f 100644
--- a/docs/detailed-install.md
+++ b/docs/detailed-install.md
@@ -256,3 +256,15 @@ Optional assets include:
  - a region blacklist: e.g. [the ENCODE blacklist](https://github.com/Boyle-Lab/Blacklist)
  - a [genomic feature annotation file](annotation.md)
 
+### 5: Confirm installation 
+
+After setting up your environment to run `PEPATAC`, you can confirm which means of running the pipeline are now executable using the included `checkinstall` script.  This can either be run directly from the `pepatac/` repository:
+
+```console
+./checkinstall
+```
+
+or from the web:
+```console
+curl -sSL https://raw.githubusercontent.com/databio/pepatac/checkinstall | bash
+```
\ No newline at end of file