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TSSE score appropriate cutoff #235

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ksmtnals90 opened this issue Feb 25, 2023 · 0 comments
Open

TSSE score appropriate cutoff #235

ksmtnals90 opened this issue Feb 25, 2023 · 0 comments

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@ksmtnals90
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First of all, I really appreciate with your great pipeline !
I'm analyzing my own data which the raw file is aligned to mm10 (totally used Refgenie asset for mm10).

When calculating the TSSE score, I wonder what reference is calculated when using the refgenie asset for mm10. Is the TSS annotation come from 'Refseq mm10 annotation?'.

If not, I want to know about the appropriate TSSE score cutoff for mm10 (and hg38)

Thanks !!

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