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Dockerfile
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#####################################################################################
# Docker image for running conformance tests #
# with custom UBUNTU_VERSION, PYTHON_VERSION, CWLTOOL_VERSION, and CWLTEST_VERSION #
#####################################################################################
# Build Cmd: docker build --no-cache --rm -t cwltool:latest . #
#####################################################################################
# can be provided through --build-arg PARAM=value
ARG UBUNTU_VERSION="20.04"
ARG PYTHON_VERSION="3.8.10"
ARG CWLTOOL_VERSION="main"
ARG CWLTEST_VERSION="main"
FROM ubuntu:${UBUNTU_VERSION}
LABEL maintainer="[email protected]"
ENV DEBIAN_FRONTEND noninteractive
WORKDIR /tmp
ARG PYTHON_VERSION
ARG CWLTOOL_VERSION
ARG CWLTEST_VERSION
ENV PYTHON_URL "https://www.python.org/ftp/python/${PYTHON_VERSION}/Python-${PYTHON_VERSION}.tgz"
ENV CWLTOOL_URL "https://github.com/common-workflow-language/cwltool.git"
ENV CWLTEST_URL "https://github.com/common-workflow-language/cwltest.git"
RUN echo "Installing dependencies" && \
apt-get update && \
apt-get install -y gcc build-essential \
git wget curl zlib1g-dev libmysqlclient-dev libffi-dev libssl-dev \
ca-certificates \
nodejs mysql-client apt-transport-https libsqlite3-dev \
gnupg-agent software-properties-common && \
echo "Installing Python" && \
wget ${PYTHON_URL} && \
tar xzf Python-${PYTHON_VERSION}.tgz && \
cd Python-${PYTHON_VERSION} && \
./configure && \
make && \
make install && \
cd .. && \
pip3 install -U pip && \
echo "Installing docker-ce-cli" && \
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | apt-key add - && \
add-apt-repository "deb [arch=amd64] https://download.docker.com/linux/ubuntu $(lsb_release -cs) stable" && \
apt-get update && \
apt-get -y install docker-ce-cli && \
echo "Installing cwltool" && \
git clone ${CWLTOOL_URL} && \
cd cwltool && \
git checkout ${CWLTOOL_VERSION} && \
pip3 install . && \
cd .. && \
echo "Installing cwltest" && \
git clone ${CWLTEST_URL} && \
cd cwltest && \
git checkout ${CWLTEST_VERSION} && \
pip3 install . && \
cd .. && \
# cleaning up
apt-get clean && \
apt-get purge && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* /usr/share/doc/* && \
strip /usr/local/bin/*; true