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"ansi-colors": "^3.0.0", - "uuid": "^3.3.2" + "ansi-colors": "3.2.4", + "uuid": "3.3.2" } }, "webpack-merge": { @@ -15052,7 +15059,7 @@ "integrity": "sha512-4p8WQyS98bUJcCvFMbdGZyZmsKuWjWVnVHnAS3FFg0HDaRVrPbkivx2RYCre8UiemD67RsiFFLfn4JhLAin8Vw==", "dev": true, "requires": { - "lodash": "^4.17.5" + "lodash": "4.17.11" } }, "webpack-sources": { @@ -15061,8 +15068,8 @@ "integrity": "sha512-OiVgSrbGu7NEnEvQJJgdSFPl2qWKkWq5lHMhgiToIiN9w34EBnjYzSYs+VbL5KoYiLNtFFa7BZIKxRED3I32pA==", "dev": true, "requires": { - "source-list-map": "^2.0.0", - "source-map": "~0.6.1" + "source-list-map": "2.0.1", + "source-map": "0.6.1" }, "dependencies": { "source-map": { @@ -15079,7 +15086,7 @@ "integrity": "sha512-Az7y8xTniNhaA0620AV1KPwWOqawurVVDzQSpPAeR5RwNbL91GoBSJAAo9cfd+GiFHwsS5bbHepBw1e6Hzxy4w==", "dev": true, "requires": { - "webpack-core": "^0.6.8" + "webpack-core": "0.6.9" } }, "websocket-driver": { @@ -15088,8 +15095,8 @@ "integrity": "sha1-DK+dLXVdk67gSdS90NP+LMoqJOs=", "dev": true, "requires": { - "http-parser-js": ">=0.4.0", - "websocket-extensions": ">=0.1.1" + "http-parser-js": "0.5.0", + "websocket-extensions": "0.1.3" } }, "websocket-extensions": { @@ -15103,8 +15110,8 @@ "resolved": "https://registry.npmjs.org/whatwg-url/-/whatwg-url-2.0.1.tgz", "integrity": "sha1-U5ayBD8CDub3BNnEXqhRnnJN5lk=", "requires": { - "tr46": "~0.0.3", - "webidl-conversions": "^3.0.0" + "tr46": "0.0.3", + "webidl-conversions": "3.0.1" } }, "when": { @@ -15118,7 +15125,7 @@ "resolved": "https://registry.npmjs.org/which/-/which-1.3.1.tgz", "integrity": "sha512-HxJdYWq1MTIQbJ3nw0cqssHoTNU267KlrDuGZ1WYlxDStUtKUhOaJmh112/TZmHxxUfuJqPXSOm7tDyas0OSIQ==", "requires": { - "isexe": "^2.0.0" + "isexe": "2.0.0" } }, "which-module": { @@ -15131,7 +15138,7 @@ "resolved": "https://registry.npmjs.org/wide-align/-/wide-align-1.1.3.tgz", "integrity": "sha512-QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA==", "requires": { - "string-width": "^1.0.2 || 2" + "string-width": "1.0.2" } }, "windows-release": { @@ -15140,7 +15147,7 @@ "integrity": "sha512-QTlz2hKLrdqukrsapKsINzqMgOUpQW268eJ0OaOpJN32h272waxR9fkB9VoWRtK7uKHG5EHJcTXQBD8XZVJkFA==", "dev": true, "requires": { - "execa": "^1.0.0" + "execa": "1.0.0" }, "dependencies": { "cross-spawn": { @@ -15149,11 +15156,11 @@ "integrity": "sha512-eTVLrBSt7fjbDygz805pMnstIs2VTBNkRm0qxZd+M7A5XDdxVRWO5MxGBXZhjY4cqLYLdtrGqRf8mBPmzwSpWQ==", "dev": true, "requires": { - "nice-try": "^1.0.4", - "path-key": "^2.0.1", - "semver": "^5.5.0", - "shebang-command": "^1.2.0", - "which": "^1.2.9" + "nice-try": "1.0.5", + "path-key": "2.0.1", + "semver": "5.7.0", + "shebang-command": "1.2.0", + "which": "1.3.1" } }, "execa": { @@ -15162,13 +15169,13 @@ "integrity": "sha512-adbxcyWV46qiHyvSp50TKt05tB4tK3HcmF7/nxfAdhnox83seTDbwnaqKO4sXRy7roHAIFqJP/Rw/AuEbX61LA==", "dev": true, "requires": { - "cross-spawn": "^6.0.0", - "get-stream": "^4.0.0", - "is-stream": "^1.1.0", - "npm-run-path": "^2.0.0", - "p-finally": "^1.0.0", - "signal-exit": "^3.0.0", - "strip-eof": "^1.0.0" + "cross-spawn": "6.0.5", + "get-stream": "4.1.0", + "is-stream": "1.1.0", + "npm-run-path": "2.0.2", + "p-finally": "1.0.0", + "signal-exit": "3.0.2", + "strip-eof": "1.0.0" } }, "get-stream": { @@ -15177,7 +15184,7 @@ "integrity": "sha512-GMat4EJ5161kIy2HevLlr4luNjBgvmj413KaQA7jt4V8B4RDsfpHk7WQ9GVqfYyyx8OS/L66Kox+rJRNklLK7w==", "dev": true, "requires": { - "pump": "^3.0.0" + "pump": "3.0.0" } }, "pump": { @@ -15186,8 +15193,8 @@ "integrity": "sha512-LwZy+p3SFs1Pytd/jYct4wpv49HiYCqd9Rlc5ZVdk0V+8Yzv6jR5Blk3TRmPL1ft69TxP0IMZGJ+WPFU2BFhww==", "dev": true, "requires": { - "end-of-stream": "^1.1.0", - "once": "^1.3.1" + "end-of-stream": "1.4.1", + "once": "1.4.0" } } } @@ -15203,7 +15210,7 @@ "integrity": "sha512-rvw3QTZc8lAxyVrqcSGVm5yP/IJ2UcB3U0graE3LCFoZ0Yn2x4EoVSqJKdB/T5M+FLcRPjz4TDacRf3OCfNUzw==", "dev": true, "requires": { - "errno": "~0.1.7" + "errno": "0.1.7" } }, "wrap-ansi": { @@ -15211,8 +15218,8 @@ "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-2.1.0.tgz", "integrity": "sha1-2Pw9KE3QV5T+hJc8rs3Rz4JP3YU=", "requires": { - "string-width": "^1.0.1", - "strip-ansi": "^3.0.1" + "string-width": "1.0.2", + "strip-ansi": "3.0.1" } }, "wrappy": { @@ -15226,9 +15233,9 @@ "integrity": "sha512-nnWLa/NwZSt4KQJu51MYlCcSQ5g7INpOrOMt4XV8j4dqTXdmlUmSHQ8/oLC069ckre0fRsgfvsKwbTdtKLCDkA==", "dev": true, "requires": { - "async-limiter": "~1.0.0", - "safe-buffer": "~5.1.0", - "ultron": "~1.1.0" + "async-limiter": "1.0.0", + "safe-buffer": "5.1.2", + "ultron": "1.1.1" } }, "xlsx": { @@ -15236,13 +15243,13 @@ "resolved": "https://registry.npmjs.org/xlsx/-/xlsx-0.14.3.tgz", "integrity": "sha512-wgt9zGKeFp4WIQdPx+j2sNNbDYRbJ+M+uuFcS16pf2yLo/aKcG3RaD4xmS/LHT5rznc6V27NRwIXNWmxLj6eZw==", "requires": { - "adler-32": "~1.2.0", - "cfb": "^1.1.0", - "codepage": "~1.14.0", - "commander": "~2.17.1", - "crc-32": "~1.2.0", - "exit-on-epipe": "~1.0.1", - "ssf": "~0.10.2" + "adler-32": "1.2.0", + "cfb": "1.1.0", + "codepage": "1.14.0", + "commander": "2.17.1", + "crc-32": "1.2.0", + "exit-on-epipe": "1.0.1", + "ssf": "0.10.2" } }, "xml-name-validator": { @@ -15256,8 +15263,8 @@ "integrity": "sha512-esZnJZJOiJR9wWKMyuvSE1y6Dq5LCuJanqhxslH2bxM6duahNZ+HMpCLhBQGZkbX6xRf8x1Y2eJlgt2q3qo49Q==", "dev": true, "requires": { - "sax": ">=0.6.0", - "xmlbuilder": "~9.0.1" + "sax": "1.2.4", + "xmlbuilder": "9.0.7" } }, "xmlbuilder": { @@ -15295,7 +15302,7 @@ "integrity": "sha512-AkTuIuVTET12tpsVIQo+ZU6f/qDmKuRUcjaqR+OIvm+aCBsZ95i7UVY5WJ9TMsSaZ0DA2WxoZ4acu0sPH+OKAw==", "dev": true, "requires": { - "cuint": "^0.2.2" + "cuint": "0.2.2" } }, "y18n": { @@ -15313,19 +15320,19 @@ "resolved": "https://registry.npmjs.org/yargs/-/yargs-7.1.0.tgz", "integrity": "sha1-a6MY6xaWFyf10oT46gA+jWFU0Mg=", "requires": { - "camelcase": "^3.0.0", - "cliui": "^3.2.0", - "decamelize": "^1.1.1", - "get-caller-file": "^1.0.1", - "os-locale": "^1.4.0", - "read-pkg-up": "^1.0.1", - "require-directory": "^2.1.1", - "require-main-filename": "^1.0.1", - "set-blocking": "^2.0.0", - "string-width": "^1.0.2", - "which-module": "^1.0.0", - "y18n": "^3.2.1", - "yargs-parser": "^5.0.0" + "camelcase": "3.0.0", + "cliui": "3.2.0", + "decamelize": "1.2.0", + "get-caller-file": "1.0.3", + "os-locale": "1.4.0", + "read-pkg-up": "1.0.1", + "require-directory": "2.1.1", + "require-main-filename": "1.0.1", + "set-blocking": "2.0.0", + "string-width": "1.0.2", + "which-module": "1.0.0", + "y18n": "3.2.1", + "yargs-parser": "5.0.0" }, "dependencies": { "camelcase": { @@ -15340,7 +15347,7 @@ "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-5.0.0.tgz", "integrity": "sha1-J17PDX/+Bcd+ZOfIbkzZS/DhIoo=", "requires": { - "camelcase": "^3.0.0" + "camelcase": "3.0.0" }, "dependencies": { "camelcase": { diff --git a/package.json b/package.json index c91a889e04..ecc82e375a 100644 --- a/package.json +++ b/package.json @@ -45,6 +45,7 @@ "@angular/upgrade": "^7.2.10", "@coreui/angular": "^2.4.5", "@coreui/coreui": "^2.1.8", + "angular-ng-autocomplete": "^1.1.14", "angulartics2": "^7.5.1", "bootstrap": "^4.3.1", "chart.js": "2.8.0", diff --git a/src/app/api-connector/applications.service.ts b/src/app/api-connector/applications.service.ts index e9a88fb11c..c554667286 100644 --- a/src/app/api-connector/applications.service.ts +++ b/src/app/api-connector/applications.service.ts @@ -3,12 +3,13 @@ import {ApiSettings} from './api-settings.service' import {HttpClient, HttpHeaders} from '@angular/common/http'; import {Observable} from 'rxjs'; import {Cookie} from 'ng2-cookies/ng2-cookies'; +import {EdamOntologyTerm} from '../applications/edam-ontology-term'; const header: HttpHeaders = new HttpHeaders({ - 'X-CSRFToken': Cookie.get('csrftoken'), - 'Content-Type': 'application/json' + 'X-CSRFToken': Cookie.get('csrftoken'), + 'Content-Type': 'application/json' -}); + }); /** * Service which provides methods for creating application. @@ -35,7 +36,7 @@ export class ApplicationsService { validateApplicationAsPIByHash(hash: string): Observable { - return this.http.post(`${ApiSettings.getApiBaseURL()}project_applications/validation/${hash}/`, null,{ + return this.http.post(`${ApiSettings.getApiBaseURL()}project_applications/validation/${hash}/`, null, { headers: header, withCredentials: true }) @@ -62,6 +63,13 @@ export class ApplicationsService { }) } + getEdamOntologyTerms(): Observable { + return this.http.get(`${ApiSettings.getApiBaseURL()}edam_ontology/`, { + headers: header, + withCredentials: true + }) + } + /** * Checks if some client has the ressource avaiable for an application. * @param {string} app_id diff --git a/src/app/applications/addcloudapplication.component.html b/src/app/applications/addcloudapplication.component.html index 73a0c7184c..888d33fea2 100644 --- a/src/app/applications/addcloudapplication.component.html +++ b/src/app/applications/addcloudapplication.component.html @@ -292,7 +292,9 @@
Resources*
@@ -341,6 +343,43 @@
Institutional Information
Additional Information
+
+ +
+
+ + + + + + + + +
+ +
+
+
{{term.term}} + ❌ + + +
+
+
+ +
diff --git a/src/app/applications/addcloudapplication.component.ts b/src/app/applications/addcloudapplication.component.ts index 2ae501abac..86fdcd0a67 100644 --- a/src/app/applications/addcloudapplication.component.ts +++ b/src/app/applications/addcloudapplication.component.ts @@ -1,4 +1,4 @@ -import {Component, OnInit} from '@angular/core'; +import {Component, OnInit, ViewChild} from '@angular/core'; import {NgForm} from '@angular/forms'; import {ApiSettings} from '../api-connector/api-settings.service' import {ApplicationsService} from '../api-connector/applications.service' @@ -7,6 +7,8 @@ import {Flavor} from '../virtualmachines/virtualmachinemodels/flavor'; import {FlavorType} from '../virtualmachines/virtualmachinemodels/flavorType'; import {environment} from '../../environments/environment'; import {ApplicationBaseClass} from 'app/shared/shared_modules/baseClass/application-base-class'; +import {EdamOntologyTerm} from './edam-ontology-term'; +import {AutocompleteComponent} from 'angular-ng-autocomplete'; /** * This components provides the functions to create a new Cloud Application. @@ -26,11 +28,19 @@ export class AddcloudapplicationComponent extends ApplicationBaseClass implement */ public production: boolean = environment.production; + public edam_ontology_terms: EdamOntologyTerm[]; + + @ViewChild('edam_ontology') edam_ontology: AutocompleteComponent; + /** * List of all collapse booleans. */ public collapseList: boolean[]; + ontology_search_keyword: string = 'term'; + + selected_ontology_terms: EdamOntologyTerm[] = []; + /** * Contains errors recieved when submitting an application. */ @@ -72,6 +82,9 @@ export class AddcloudapplicationComponent extends ApplicationBaseClass implement ngOnInit(): void { this.getListOfFlavors(); this.getListOfTypes(); + this.applicationsservice.getEdamOntologyTerms().subscribe((terms: EdamOntologyTerm[]) => { + this.edam_ontology_terms = terms; + }) } /** @@ -106,6 +119,28 @@ export class AddcloudapplicationComponent extends ApplicationBaseClass implement this.flavorservice.getListOfFlavorsAvailable().subscribe((flavors: Flavor[]) => this.flavorList = flavors); } + removeEDAMterm(term: EdamOntologyTerm): void { + const indexOf: number = this.selected_ontology_terms.indexOf(term); + this.selected_ontology_terms.splice(indexOf, 1); + + } + + selectEvent(item) { + if (this.selected_ontology_terms.indexOf(item) === -1) { + this.selected_ontology_terms.push(item); + } + this.edam_ontology.clear(); + } + + onChangeSearch(val: string) { + // fetch remote data from here + // And reassign the 'data' which is binded to 'data' property. + } + + onFocused(e) { + // do something when input is focused + } + /** * Submits a new cloud application. * Therefore checks if the different values are valid. diff --git a/src/app/applications/applications.module.ts b/src/app/applications/applications.module.ts index a436d8cd03..d9c1560991 100644 --- a/src/app/applications/applications.module.ts +++ b/src/app/applications/applications.module.ts @@ -10,39 +10,43 @@ import {ModalModule} from 'ngx-bootstrap/modal'; import {AddsimplevmComponent} from './addsimplevm.component'; import {AddcloudapplicationComponent} from './addcloudapplication.component'; import {ClickOutsideModule} from 'ng4-click-outside'; -import { MinAmoutValidatorDirective, MaxAmoutValidatorDirective, IntegerValidatorDirective, IntegerOrNullValidatorDirective } from './numberValidations.directive'; -import {ApplicationBaseClass} from "../shared/shared_modules/baseClass/application-base-class"; -import {SharedModuleModule} from "../shared/shared_modules/shared-module.module"; -import { TypeOverviewComponent } from './type-overview.component'; +import { + MinAmoutValidatorDirective, + MaxAmoutValidatorDirective, + IntegerValidatorDirective, + IntegerOrNullValidatorDirective +} from './numberValidations.directive'; +import {TypeOverviewComponent} from './type-overview.component'; import {AppSidebarModule} from '@coreui/angular'; import {ValidationApplicationComponent} from '../validation-application/validation-application.component'; +import {AutocompleteLibModule} from 'angular-ng-autocomplete'; /** * Applications Module. */ @NgModule({ - imports: [ - AccordionModule.forRoot(), - ApplicationsRoutingModule, - ClickOutsideModule, - TabsModule, - CommonModule, - FormsModule, - ModalModule.forRoot(), - AppSidebarModule, - //SharedModuleModule - ], - declarations: [ - ApplicationsComponent, - AddsimplevmComponent, - AddcloudapplicationComponent, - MinAmoutValidatorDirective, - MaxAmoutValidatorDirective, - IntegerValidatorDirective, - IntegerOrNullValidatorDirective, - TypeOverviewComponent, - ValidationApplicationComponent - ] -}) + imports: [ + AccordionModule.forRoot(), + ApplicationsRoutingModule, + ClickOutsideModule, + TabsModule, + CommonModule, + FormsModule, + ModalModule.forRoot(), + AppSidebarModule, + AutocompleteLibModule + ], + declarations: [ + ApplicationsComponent, + AddsimplevmComponent, + AddcloudapplicationComponent, + MinAmoutValidatorDirective, + MaxAmoutValidatorDirective, + IntegerValidatorDirective, + IntegerOrNullValidatorDirective, + TypeOverviewComponent, + ValidationApplicationComponent + ] + }) export class ApplicationsModule { } diff --git a/src/app/applications/edam-ontology-term.spec.ts b/src/app/applications/edam-ontology-term.spec.ts new file mode 100644 index 0000000000..0c234fd611 --- /dev/null +++ b/src/app/applications/edam-ontology-term.spec.ts @@ -0,0 +1,7 @@ +import { EdamOntologyTerm } from './edam-ontology-term'; + +describe('EdamOntologyTerm', () => { + it('should create an instance', () => { + expect(new EdamOntologyTerm()).toBeTruthy(); + }); +}); diff --git a/src/app/applications/edam-ontology-term.ts b/src/app/applications/edam-ontology-term.ts new file mode 100644 index 0000000000..0df1847157 --- /dev/null +++ b/src/app/applications/edam-ontology-term.ts @@ -0,0 +1,56 @@ +export class EdamOntologyTerm { + + private _storid: number; + private _name: string; + private _term: string; + private _uri: string; + private _is_a: number[]; + + constructor(storid: number, name: string, term: string, uri: string, is_a: number[]) { + this._storid = storid; + this._name = name; + this._term = term; + this._uri = uri; + this._is_a = is_a; + } + + get storid(): number { + return this._storid; + } + + set storid(value: number) { + this._storid = value; + } + + get name(): string { + return this._name; + } + + set name(value: string) { + this._name = value; + } + + get term(): string { + return this._term; + } + + set term(value: string) { + this._term = value; + } + + get uri(): string { + return this._uri; + } + + set uri(value: string) { + this._uri = value; + } + + get is_a(): number[] { + return this._is_a; + } + + set is_a(value: number[]) { + this._is_a = value; + } +} diff --git a/topic.biotools.json b/topic.biotools.json new file mode 100644 index 0000000000..e69de29bb2