test.yml

name: Test
on: [push, pull_request]

defaults:
  run:
    shell: bash -l {0}

jobs:
  test-linux:
    name: Test on Linux
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version:
          - "3.7"
          - "3.8"
          - "3.9"
          - "3.10"
    steps:
    - uses: actions/checkout@v3
    - name: Use python ${{ matrix.python-version }}
      run: echo -e "\n   - python = ${{ matrix.python-version }}" >> ./HiCMatrix_env_ci.yml
    - uses: mamba-org/setup-micromamba@main
      with:
        environment-file: ./HiCMatrix_env_ci.yml
        cache-downloads: true
        environment-name: HiCMatrix_env_ci
    - name: pip install
      run: |
        python3 -m pip install .
      shell: micromamba-shell {0}
    - name: Test HiCMatrix
      run: |
        py.test hicmatrix/test/ --capture=sys
      shell: micromamba-shell {0}
  test-osx:
    name: Test on OSX
    runs-on: macOS-latest
    strategy:
      matrix:
        python-version:
          - "3.8"
          - "3.9"
          - "3.10"
    steps:
    - uses: actions/checkout@v3
    - name: Use python ${{ matrix.python-version }}
      run: echo -e "\n   - python = ${{ matrix.python-version }}" >> ./HiCMatrix_env_ci.yml
    - uses: mamba-org/setup-micromamba@main
      with:
        environment-file: ./HiCMatrix_env_ci.yml
        cache-downloads: true
        environment-name: HiCMatrix_env_ci
    - name: pip install
      run: |
        python3 -m pip install .
      shell: micromamba-shell {0}
    - name: Test HiCMatrix
      run: |
        py.test hicmatrix/test/ --capture=sys
      shell: micromamba-shell {0}