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data/flu-report-json}/usgs_avian_flu_report_2010_07_12.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_07_16.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_07_23.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_07_30.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_08_06.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_08_16.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_08_18.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_08_20.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_08_26.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_09_09.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2010_09_10.json 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data/flu-report-json}/usgs_avian_flu_report_2010_12_17.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_01_14.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_01_24.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_01_28.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_02_08.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_02_11.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_02_22.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_02_28.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_03_07.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_03_15.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2011_03_22.json 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data/flu-report-json}/usgs_avian_flu_report_2012_02_02.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_02_22.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_02_29.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_03_06.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_03_12.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_03_23.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_04_09.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_04_12.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_04_16.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_04_25.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_05_22.json 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data/flu-report-json}/usgs_avian_flu_report_2012_10_12.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_10_22.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_11_15.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_11_30.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_12_14.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_12_21.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2012_12_27.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2013_01_03.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2013_01_18.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2013_01_25.json (100%) rename {flu-report-json => data/flu-report-json}/usgs_avian_flu_report_2013_02_01.json 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(100%) rename data/{validation => nlp/validation-data}/training_data_2015_03_27_8.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2015_03_27_8.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2015_07_24_1.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2015_07_24_1.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_2.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_2.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_3.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_3.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_4.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2015_12_18_4.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2016_03_21_3.ann (100%) rename data/{validation => 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(100%) rename data/{validation => nlp/validation-data}/training_data_2016_11_07_4.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2017_03_03_10.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2017_03_03_10.txt (100%) rename data/{validation => nlp/validation-data}/training_data_2017_03_03_9.ann (100%) rename data/{validation => nlp/validation-data}/training_data_2017_03_03_9.txt (100%) rename validation_calculations.xlsx => data/nlp/validation_calculations.xlsx (100%) create mode 100644 data/reports-for-er-performance-measure delete mode 100644 entity-resolver.py create mode 100644 epidemics.db create mode 100644 flu-tuples.db rename print_annotation_files.py => ms_thesis/data_extraction/create_annotation_files.py (100%) rename print_datasets.py => ms_thesis/data_extraction/print_datasets.py (99%) rename select_reports.py => ms_thesis/data_extraction/select_reports.py (100%) rename standoff2corenlp.py => ms_thesis/data_extraction/standoff2corenlp.py (100%) rename tagged_entities_to_csv.py => ms_thesis/data_extraction/tagged_entities_to_csv.py (100%) create mode 100644 ms_thesis/entity_resolver/create_db.py create mode 100644 ms_thesis/entity_resolver/entity-resolver.py create mode 100644 ms_thesis/entity_resolver/flu-epidemics-2.db create mode 100644 ms_thesis/entity_resolver/flu-epidemics-3.db create mode 100644 ms_thesis/entity_resolver/flu-epidemics.db create mode 100644 ms_thesis/entity_resolver/query_db.py create mode 100644 ms_thesis/entity_resolver/select_tuples.py create mode 100644 ms_thesis/entity_resolver/unmatched-tuples-2.db create mode 100644 ms_thesis/entity_resolver/unmatched-tuples-3.db create mode 100644 ms_thesis/entity_resolver/unmatched-tuples.db create mode 100644 ms_thesis/entity_resolver/update_table.py rename html_scraper.py => ms_thesis/web_scraper/html_scraper.py (100%) rename scrap_latest_report.py => ms_thesis/web_scraper/scrap_latest_report.py (100%) rename scraper.py => ms_thesis/web_scraper/scraper.py (100%) create mode 100644 requirements.txt create mode 100644 setup.py diff --git a/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-01.csv b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-01.csv new file mode 100644 index 0000000..44d0644 --- /dev/null +++ b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-01.csv @@ -0,0 +1,333 @@ +,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports +0,flu_00001,2011-12-06 to 2012-03-21,H5N1 subtype,"Visakhapatnam district (admin level 2), Andhra Pradesh (admin level 1); Khordha district (admin level 2), Odisha (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Lalitpur district (admin level 2), Uttar Pradesh (admin level 1); Punjab (admin level 1); Kolkata destrict (admin level 2), West Bengal (admin level 1); Orissa (admin level 1); Jharkhand (admin level 1); Khurdan piirikunta (admin level 2), Odisha (admin level 1); distretto di Siwan (admin level 2), Bihar (admin level 1); Mayurbhanj district (admin level 2), Odisha (admin level 1)",India,Galliformes; Aves; Corvus macrorhynchos; Gallus gallus; Anas; Corvus,2012_02_02_1; 2012_02_02_3; 2012_02_22_1; 2011_12_06_1; 2012_04_09_2; 2012_03_23_2; 2012_02_02_10; 2012_02_22_3; 2012_02_02_13; 2012_02_02_4 +1,flu_00002,2008-08-01 to 2008-08-15,H5N1 subtype,"Kano State (admin level 1); Gombe State (admin level 1); Mayo-Kebbi Ouest Region (admin level 1); Kebbi State (admin level 1); Katsina State (admin level 1); Juneau, Alaska (admin level 2), Alaska (admin level 1)",Nigeria,Galliformes; Anas platyrhynchos; Gallus gallus; Aves,2008_08_01_4; 2008_08_15_2 +2,flu_00003,2014-11-18 to 2014-12-19,H5N8 subtype,Kumamoto Prefecture (admin level 1); Miyazaki Prefecture (admin level 1),Japan,Galliformes; Gallus gallus; Aves,2014_12_19_4; 2014_11_18_1; 2014_12_09_1 +3,flu_00004,2016-11-18 to 2017-02-20,H7N9 subtype,"Anhui (admin level 1); Fujian (admin level 1); Wuhan (admin level 2), Hubei (admin level 1); Suzhou (admin level 2), Jiangsu (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Huzhou (admin level 2), Zhejiang (admin level 1); Suzhou (admin level 2), Anhui (admin level 1); Rizhao (admin level 2), Shandong (admin level 1); Sichuan (admin level 1); Fuzhou (admin level 2), Fujian (admin level 1); Guangdong (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Nantong (admin level 2), Jiangsu (admin level 1); Jiangsu (admin level 1); Hengyang (admin level 2), Hunan (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Aves; Gallus gallus,2017_01_13_8; 2017_03_03_2; 2017_01_10_22; 2017_01_23_9; 2016_12_20_17; 2017_01_23_10; 2016_12_29_13; 2017_01_10_21; 2016_11_18_9; 2017_03_03_10; 2016_12_29_14; 2017_02_07_17; 2017_01_13_7 +4,flu_00005,2013-07-05 to 2013-07-05,H7N9 subtype,"Sechelt Indian Government District (admin level 2), Sunshine Coast Regional District (admin level 1)",Canada,Homo sapiens,2013_07_05_4 +5,flu_00006,2007-03-20 to 2007-03-23,H5N1 subtype,Nangarhar (admin level 1); Kunar (admin level 1); Kabul Province (admin level 1),Afghanistan,Galliformes; Aves,2007_03_20_3; 2007_04_02_2 +6,flu_00007,2016-08-19 to 2016-08-25,H9N2 subtype,Yunnan (admin level 1),People's Republic of China,Homo sapiens,2016_09_09_5 +7,flu_00008,2008-12-25 to 2009-05-10,H5N1 subtype,"Dong Thap Province (admin level 1); Ca Mau (admin level 1); Thanh Hoa (admin level 2), Thanh Hóa (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Bac Ninh (admin level 1)",Vietnam,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2009_01_14_10; 2009_02_13_6; 2009_02_06_5; 2009_05_15_2; 2009_05_01_5; 2009_02_06_10; 2009_03_30_6 +8,flu_00009,2008-12-12 to 2009-03-10,H5N1 subtype,"Guizhou (admin level 1); Saint Thomas Lowland Parish (admin level 1); Beijing (admin level 1); Huaihua (admin level 2), Hunan (admin level 1); Hong Kong (admin level 1); Xinjiang (admin level 1); Yulin (admin level 2), Shaanxi (admin level 1); Hunan (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Aves; Gallus gallus; Passeridae; Anas; Anser; Homo sapiens,2009_03_02_1; 2009_01_30_5; 2008_12_12_2; 2009_01_14_9; 2009_02_06_8; 2009_02_06_3; 2009_03_17_4; 2009_01_14_8; 2009_01_21_4; 2009_03_10_1; 2009_01_14_1; 2009_02_13_3 +9,flu_00010,2008-10-09 to 2008-10-09,H5N1 subtype,"Yesan (admin level 2), South Chungcheong Province (admin level 1); Seoul (admin level 1)",South Korea,Galliformes; Anas; Aves,2008_10_09_2 +10,flu_00011,2009-11-09 to 2010-01-02,H5N1 subtype,"Pekanbaru (admin level 2), Riau Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2009_11_20_2; 2010_01_12_8 +11,flu_00012,2009-10-26 to 2009-10-26,H5N1 subtype,Guangdong (admin level 1),People's Republic of China,Homo sapiens,2009_11_06_3 +12,flu_00013,2015-06-26 to 2015-07-24,H5N1 subtype,"Tibet Autonomous Region (admin level 1); Qiannanin buyien ja miaojen autonominen prefektuuri (admin level 2), Guizhou (admin level 1); Inner Mongolia (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1)",People's Republic of China,Aves; Gallus gallus; Chroicocephalus ridibundus; Anas; Anser; Podicipedidae; Cepora,2015_07_24_1; 2015_06_26_1 +13,flu_00014,2008-02-08 to 2008-05-16,H5N1 subtype,"West Bengal (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Sipahijala district (admin level 2), Tripura (admin level 1); Tripura (admin level 1)",India,Galliformes; Anas; Gallus gallus; Aves; Homo sapiens,2008_03_03_4; 2008_02_08_5; 2008_03_28_2; 2008_04_30_2; 2008_05_16_2; 2008_04_15_2; 2008_03_27_4; 2008_05_02_2 +14,flu_00015,2016-01-29 to 2016-04-11,H5N1 subtype,Plateau State (admin level 1); Benue-Plateau State (admin level 1); Kaduna State (admin level 1),Nigeria,Aves,2016_03_14_5; 2016_01_29_3; 2016_04_11_3; 2016_02_22_4 +15,flu_00016,2015-02-23 to 2015-06-12,H5N2 subtype,"Jasper County (admin level 2), Texas (admin level 1); Sioux County (kondado sa Estados Unidos, North Dakota) (admin level 2), North Dakota (admin level 1); Jefferson County, Iowa (admin level 2), Iowa (admin level 1); Blue Earth County (admin level 2), Minnesota (admin level 1); McPherson County, Nebraska (admin level 2), Nebraska (admin level 1); Massac County (admin level 2), Illinois (admin level 1); Moody County (admin level 2), South Dakota (admin level 1); Leavenworth County (admin level 2), Kansas (admin level 1); Morrow megye (admin level 2), Oregon (admin level 1); United States Virgin Islands (admin level 1); Montana Province (admin level 1); Lewis County (admin level 2), Washington (admin level 1); comté de Elizabeth City (admin level 2), Virginia (admin level 1); Renville County (admin level 2), Minnesota (admin level 1); New Mexico (admin level 1); Buena Vista County (admin level 2), Iowa (admin level 1); Stearns County (admin level 2), Minnesota (admin level 1); Iowa (admin level 1); Adair County (admin level 2), Oklahoma (admin level 1); Minnesota (admin level 1); Meeker County (admin level 2), Minnesota (admin level 1); Beadle County (admin level 2), South Dakota (admin level 1); Osceola County (admin level 2), Iowa (admin level 1); Michigan (admin level 1); Juneau County (admin level 2), Wisconsin (admin level 1); Sac County (admin level 2), Iowa (admin level 1); Barron County (admin level 2), Wisconsin (admin level 1); Wisconsin (admin level 1); Oxford County (admin level 2), Maine (admin level 1); Nobles County (admin level 2), Minnesota (admin level 1); Cherokee County (admin level 2), Texas (admin level 1); Sioux County, Iowa (admin level 2), Iowa (admin level 1); South Dakota (admin level 1); Missouri (admin level 1); Kandiyohi County (admin level 2), Minnesota (admin level 1); Pipestone County (admin level 2), Minnesota (admin level 1); Roseau County (admin level 2), Minnesota (admin level 1); Dickey County (admin level 2), North Dakota (admin level 1); McCracken County (admin level 2), Kentucky (admin level 1); Hamilton County (admin level 2), Iowa (admin level 1); Montana (admin level 1); Calhoun County (admin level 2), Iowa (admin level 1)",United States of America,Galliformes; Aves; Phasianidae; Gallus gallus; Anas; Anser; Branta canadensis; Homo sapiens,2015_05_01_5; 2015_05_11_4; 2015_04_17_10; 2015_04_17_12; 2015_02_23_3; 2015_05_11_2; 2015_06_12_2; 2015_04_17_7; 2015_06_05_5; 2015_04_17_11; 2015_04_17_8; 2015_05_01_6; 2015_05_01_1; 2015_05_22_5; 2015_04_24_10; 2015_03_13_1; 2015_05_29_5; 2015_04_17_9; 2015_03_20_1; 2015_05_01_7; 2015_03_27_3; 2015_04_03_8; 2015_03_20_6; 2015_05_01_4; 2015_04_24_8; 2015_04_03_2; 2015_05_01_2; 2015_04_24_9 +16,flu_00017,2009-11-05 to 2009-11-05,H5N3 subtype,Prague (admin level 1),Czech Republic,Aves,2009_11_20_1 +17,flu_00018,2016-11-28 to 2017-1-24,H5N8 subtype,Niigata Prefecture (admin level 1); Aomori Prefecture (admin level 1),Japan,Homo sapiens; Anas; Gallus gallus; Aves,2016_12_06_13; 2016_12_13_16; 2017_02_01_10 +18,flu_00019,2015-01-23 to 2015-03-27,H5N1 subtype,"Jiangsu (admin level 1); Henan (admin level 1); Sanmenxia (admin level 2), Henan (admin level 1); Kunming (admin level 2), Yunnan (admin level 1)",People's Republic of China,Anas; Homo sapiens; Aves,2015_03_27_6; 2015_01_30_7; 2015_01_23_1 +19,flu_00020,2012-03-30 to 2012-05-27,H5N1 subtype,Kampong Chhnang Province (admin level 1); Phnom Penh (admin level 2); Kampong Speu Province (admin level 1),Cambodia,Galliformes; Aves; Gallus gallus; Metazoa; Homo sapiens; Sus scrofa,2012_04_12_4; 2012_06_11_3; 2012_06_11_7 +20,flu_00021,2012-09-12 to 2012-09-20,H7N3 subtype,Jalisco (admin level 1),Mexico,Galliformes; Homo sapiens; Aves,2012_09_20_3; 2012_09_14_1 +21,flu_00022,2012-08-10 to 2012-09-25,H5N1 subtype,Special Region of Yogyakarta (admin level 1); Central Java Province (admin level 1),Indonesia,Galliformes; Anas; Homo sapiens; Aves,2012_12_27_2; 2012_08_20_3 +22,flu_00023,2013-11-25 to 2014-03-07,H7N9 subtype,"Yangjiang (admin level 2), Guangdong (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1)",People's Republic of China,Galliformes; Anas; Homo sapiens; Aves,2016_10_03_6; 2014_01_31_6; 2014_01_22_6; 2014_03_07_2; 2014_03_07_13; 2014_02_19_1; 2014_01_31_2; 2014_02_07_3; 2013_12_13_2; 2014_02_19_12; 2014_03_07_6; 2014_01_09_10 +23,flu_00024,2010-04-17 to 2010-04-22,H5N1 subtype,Prey Veng Province (admin level 1),Cambodia,Galliformes; Anas; Gallus gallus; Homo sapiens,2010_05_10_1; 2010_04_26_2 +24,flu_00025,2017-05-30 to 2017-06-13,H5N8 subtype,"Gyeonggi Province (admin level 1); Jeju (admin level 1); North Jeolla Province (admin level 1); Gunsan (admin level 2), North Jeolla Province (admin level 1)",South Korea,Galliformes; Anas; Gallus gallus; Aves; Corvus macrorhynchos,2017_05_30_8; 2017_06_13_3; 2017_06_06_6 +25,flu_00026,2010-03-12 to 2010-07-16,H5N1 subtype,"Pontianak, Indonesia (admin level 2), Kalimantan Barat (admin level 1); Jambi Province (admin level 1); Riau Province (admin level 1); Boyolali (admin level 2), Central Java Province (admin level 1); Jakarta (admin level 1); Bengkulu Province (admin level 1); Riau Islands Province (admin level 1); Lampung Province (admin level 1); Central Java Province (admin level 1); Pontianak (admin level 2), Kalimantan Barat (admin level 1)",Indonesia,Galliformes; Aves; Phasianidae; Gallus gallus; Anas; Homo sapiens; Sus scrofa,2010_05_04_3; 2010_03_19_1; 2010_06_29_3; 2010_06_07_5; 2010_05_17_2; 2010_05_28_3; 2010_07_23_1; 2010_07_02_4; 2010_07_23_2; 2010_05_10_3; 2010_03_26_4 +26,flu_00027,2007-04-06 to 2007-06-04,H5N1 subtype,"Hunan (admin level 1); Hong Kong (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Lhasa (admin level 2), Tibet (admin level 1)",People's Republic of China,Galliformes; Aves; Corvus splendens; Gallus gallus; Sturnus sericeus; Pica pica; Sturnus vulgaris,2007_06_22_1; 2007_06_12_1; 2007_04_06_1; 2007_06_15_1; 2007_05_30_2; 2007_06_01_1 +27,flu_00028,2016-09-09 to 2016-09-09,H5N8 subtype,"Ojeong-dong (baranggay sa Habagatang Korea, Gyeonggi-do) (admin level 2), Bucheon (admin level 1)",South Korea,Anas; Gallus gallus,2016_09_09_4 +28,flu_00029,2008-04-21 to 2008-05-05,H5N1 subtype,Aomori Prefecture (admin level 1); Akita Prefecture (admin level 1),Japan,Anas; Gallus gallus; Aves,2008_05_16_1; 2008_05_02_1 +29,flu_00030,2016-02-20 to 2016-06-07,H5N6 subtype,"Xiangxi Tujia eta Miao Prefektura autonomoa (admin level 2), Hunan (admin level 1); Zhuzhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Hunan (admin level 1); Hong Kong (admin level 1); Huizhou (admin level 2), Guangdong (admin level 1)",People's Republic of China,Homo sapiens; Galliformes; Gallus gallus; Aves,2016_06_07_7; 2016_06_10_5; 2016_03_21_7; 2016_05_06_6; 2016_02_29_2; 2016_03_21_1; 2016_03_14_1; 2016_05_03_4 +30,flu_00031,2014-09-25 to 2014-10-25,H5N1 subtype,"Gorontalo Province (admin level 1); Reggenza di Bone Bolango (admin level 2), Gorontalo Province (admin level 1)",Indonesia,Gallus gallus,2014_11_03_9 +31,flu_00032,2011-12-21 to 2012-04-25,H5N1 subtype,"Ningxia Hui Autonomous Region (admin level 1); Stueng Hav District (admin level 2), Sihanoukville (admin level 1); Hong Kong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Aves; Corvus splendens; Anas platyrhynchos; Gallus gallus; Copsychus saularis; Chroicocephalus ridibundus; Homo sapiens; Cepora; Falco peregrinus calidus; Columbidae,2012_04_12_1; 2012_03_12_1; 2012_02_22_2; 2012_04_09_1; 2012_02_29_1; 2012_01_06_1; 2012_03_23_1; 2012_04_25_2; 2012_01_06_5; 2012_03_06_1 +32,flu_00033,2007-07-17 to 2007-07-17,H5N1 subtype,"Bezirk Erfurt (admin level 1); Kreis Jena-Land (admin level 2), Gera District (admin level 1)",East Germany,Galliformes; Anas; Aves,2007_07_17_3 +33,flu_00034,2013-07-18 to 2013-09-23,H5N1 subtype,Kampot Province (admin level 1); Battambang Province (admin level 1); Kandal Province (admin level 1); Prey Veng Province (admin level 1),Cambodia,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2013_08_19_2; 2013_09_23_2; 2013_08_23_3; 2013_07_18_2 +34,flu_00035,2007-05-01 to 2007-05-03,H5N1 subtype,United States Virgin Islands (admin level 1),United States of America,Aves,2007_05_11_1; 2007_05_03_2 +35,flu_00036,2012-12-24 to 2013-05-03,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Galliformes; Homo sapiens; Aves; Gallus gallus,2013_05_03_1; 2013_04_30_4; 2012_02_02_11 +36,flu_00037,2016-01-02 to 2016-01-22,H5N1 subtype,Nigeria (country),Nigeria,Aves,2016_01_15_3; 2016_01_08_3; 2016_01_22_4 +37,flu_00038,2016-11-23 to 2016-12-20,Influenza A virus,Republic of Kalmykia (admin level 1); Astrakhan Oblast (admin level 1),Russia,Galliformes; Homo sapiens; Aves,2016_12_20_14; 2016_12_13_18 +38,flu_00039,2016-11-07 to 2016-12-13,H5N8 subtype,Brandenburg (admin level 1); Mecklenburg-Vorpommern (admin level 1),Germany,Galliformes; Larus marinus; Aves; Laridae; Gallus gallus; Anas; Homo sapiens,2016_12_06_4; 2016_11_15_4; 2016_12_13_5; 2016_11_15_10; 2016_12_06_9 +39,flu_00040,2009-02-14 to 2009-05-09,H5N1 subtype,"Comilla District (admin level 2), Chattogram Division (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1); Gaibandha (admin level 2), Rangpur Division (admin level 1); Netrakona (admin level 2), Mymensingh Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Galliformes; Homo sapiens; Gallus gallus; Aves,2009_06_19_1; 2009_03_17_3; 2009_04_20_2; 2009_03_10_2 +40,flu_00041,2007-09-04 to 2007-09-04,H5N1 subtype,Bavaria (admin level 1),Germany,Galliformes; Anas; Aves,2007_09_04_2 +41,flu_00042,2012-08-06 to 2012-08-20,H5N1 subtype,"Hai Duong (admin level 1); Nam Dinh (admin level 2), Nam Định (admin level 1); Ninh Binh (admin level 2), Ninh Bình (admin level 1)",Vietnam,Galliformes; Aves,2012_08_10_1; 2012_08_20_1; 2012_08_06_2 +42,flu_00043,2015-01-16 to 2015-02-13,H5N8 subtype,"Sejong City (admin level 1); Anseong (admin level 2), Gyeonggi Province (admin level 1); Busan (admin level 1)",South Korea,Anas; Anser; Gallus gallus; Aves,2015_02_13_1; 2015_01_16_2 +43,flu_00044,2012-06-11 to 2012-06-11,Influenza A virus,Amur Oblast (admin level 1),Russia,Galliformes,2012_06_11_5 +44,flu_00045,2013-09-09 to 2013-09-09,H7N3 subtype,Jalisco (admin level 1),Mexico,Galliformes; Aves,2013_09_09_3 +45,flu_00046,2008-12-12th to 2009-04-04,H5N1 subtype,"Bekasi (admin level 2), West Java Province (admin level 1); Wonogiri (admin level 2), Central Java Province (admin level 1); Bantul (admin level 2), Special Region of Yogyakarta (admin level 1); Ngawi (admin level 2), East Java (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); East Java (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Banten Province (admin level 1); Depok (admin level 2), West Java Province (admin level 1); Banyuwangi (admin level 2), East Java (admin level 1); Tombali Region (admin level 1); Kepulauan Riau (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2009_01_30_8; 2009_03_23_3; 2009_02_13_5; 2009_04_20_5; 2009_01_21_6; 2009_03_10_5; 2009_01_30_3; 2009_02_13_9; 2009_03_02_5 +46,flu_00047,2015-01-23 to 2015-01-23,H5N1 subtype,Haifa District (admin level 1),Israel,Aves,2015_01_23_3 +47,flu_00048,2009-11-06 to 2010-01-12,H1N1 subtype,Indiana (admin level 1); New York (admin level 1); North Carolina (admin level 1),United States of America,Sus scrofa; Homo sapiens; Aves; Canis lupus familiaris,2009_11_06_7; 2009_11_20_4; 2010_01_12_13 +48,flu_00049,2010-12-18 to 2011-03-14,H5N1 subtype,"Chiba Prefecture (admin level 1); Aomori Prefecture (admin level 1); Yamaguchi Prefecture (admin level 1); Moita (admin level 2), Setúbal District (admin level 1); Ibaraki Prefecture (admin level 1); Nara Prefecture (admin level 1); Nagasaki Prefecture (admin level 1); Tochigi Prefecture (admin level 1); Shimane Prefecture (admin level 1); Miyazaki Prefecture (admin level 1); Tokushima Prefecture (admin level 1); Kagoshima Prefecture (admin level 1); Mie Prefecture (admin level 1); Aichi Prefecture (admin level 1); Fukushima Prefecture (admin level 1)",Japan,Galliformes; Aves; Anas platyrhynchos; Gallus gallus; Anas; Podiceps cristatus,2011_02_11_7; 2011_01_28_5; 2011_02_08_1; 2011_02_08_3; 2011_02_22_6; 2011_03_22_4; 2011_02_28_1; 2011_02_22_2; 2011_03_15_5; 2011_02_11_1; 2011_03_22_1; 2011_03_07_1; 2011_01_24_2; 2011_01_28_3 +49,flu_00050,2015-11-20 to 2015-11-20,H5N1 subtype,Battambang Province (admin level 1); Siem Reap Province (admin level 1),Cambodia,Anas; Aves,2015_11_20_2 +50,flu_00051,2017-01-10 to 2017-02-07,H5N8 subtype,"Stockholm County (admin level 1); Gotland County (admin level 1); Utö landskommun (admin level 2), Haninge Municipality (admin level 1); Norrköping Chū-tī-chhī (admin level 2), Östergötland County (admin level 1)",Sweden,Galliformes; Anas platyrhynchos; Aves,2017_02_07_15; 2017_01_10_5 +51,flu_00052,2009-03-02 to 2009-07-25,H5N1 subtype,"Vinh Long (admin level 2), Vĩnh Long (admin level 1); Dong Thap Province (admin level 1); Hau Giang (admin level 1); Ha Tinh (admin level 1); Bac Lieu (admin level 1); Ca Mau (admin level 1); Long Xuyen (admin level 2), An Giang (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1)",Vietnam,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2009_03_02_8; 2009_03_23_5; 2009_08_03_5; 2009_05_22_2; 2009_06_29_3 +52,flu_00053,2009-02-08 to 2009-05-22,H5N1 subtype,Suez Governorate (admin level 1); Qena Governorate (admin level 1); Alexandria Governorate (admin level 1); Qalyubia Governorate (admin level 1); Asyut Governorate (admin level 1); Cairo Governorate (admin level 1); Sohag Governorate (admin level 1); Beheira Governorate (admin level 1),Egypt,Galliformes; Homo sapiens; Aves,2009_03_30_4; 2009_04_28_3; 2009_04_14_3; 2009_02_13_8; 2009_06_12_4; 2009_05_15_3; 2009_04_08_4; 2009_03_17_9; 2009_03_10_4; 2009_03_23_4; 2009_05_22_3; 2009_05_01_4; 2009_05_11_4 +53,flu_00054,2016-01-16 to 2016-03-04,H5N1 subtype,Giza Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Homo sapiens; Aves,2016_01_22_2; 2016_01_29_5; 2016_03_21_9 +54,flu_00055,2016-01-06 to 2016-03-17,H7N9 subtype,"Hubei (admin level 1); Yongzhou (admin level 2), Hunan (admin level 1); Shaoxing (admin level 2), Zhejiang (admin level 1); Fujian (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Chaozhou (admin level 2), Guangdong (admin level 1); Jieyang (admin level 2), Guangdong (admin level 1); Hunan (admin level 1); Zhaoqing (admin level 2), Guangdong (admin level 1); Longyan (admin level 2), Fujian (admin level 1); Jiangsu (admin level 1)",People's Republic of China,Galliformes; Homo sapiens,2016_02_22_7; 2016_03_14_9; 2016_01_29_4; 2016_01_15_7; 2016_02_08_7; 2016_05_06_7; 2016_02_16_3; 2016_01_08_7; 2016_02_29_5; 2016_03_21_8 +55,flu_00056,2010-12-04 to 2011-01-26,H5N1 subtype,Luxor Governorate (admin level 1); Aswan Governorate (admin level 1); Qena Governorate (admin level 1); Gharbia Governorate (admin level 1); Giza Governorate (admin level 1),Egypt,Galliformes; Homo sapiens,2010_12_09_5; 2011_01_14_7; 2011_03_07_3; 2011_01_24_6; 2011_02_08_4 +56,flu_00057,2015-07-10 to 2015-11-20,H5N1 subtype,Lagos (admin level 1); Bayelsa State (admin level 1); Kano State (admin level 1),Nigeria,Homo sapiens; Anas; Gallus gallus; Aves,2015_08_24_5; 2015_08_07_5; 2015_07_20_3; 2015_09_30_2; 2015_07_10_2; 2015_08_28_2; 2015_07_31_4; 2015_09_18_3; 2015_11_20_3 +57,flu_00058,2016-11-05 to 2016-11-05,H5N8 subtype,Burundi (country),Burundi,Aves,2016_12_06_10 +58,flu_00059,2010-12-01 to 2011-03-15,H5N1 subtype,Hong Kong (admin level 1); Qinghai (admin level 1),People's Republic of China,Galliformes; Aves; Gallus gallus; Anser; Copsychus saularis,2011_01_28_2; 2011_01_24_1; 2011_03_15_2; 2010_12_03_1; 2011_02_11_5 +59,flu_00060,2013-08-19 to 2013-09-09,H7N7 subtype,"Bologna (admin level 2), Emilia-Romagna (admin level 1); Provincia de Ferrara (admin level 2), Emilia-Romagna (admin level 1); Ferrara (admin level 2), Emilia-Romagna (admin level 1); Provincia Augustae Praetoriensis (admin level 2), Piedmont (admin level 1)",Italy,Galliformes; Phasianidae; Aves,2013_09_09_2; 2013_08_29_1; 2013_09_13_2 +60,flu_00061,2016-06-10 to 2016-07-05,H5N1 subtype,Lagos (admin level 1); Kaduna State (admin level 1),Nigeria,Aves,2016_07_05_3; 2016_06_10_3 +61,flu_00062,2009-12-22 to 2009-12-22,H1N1 subtype,England (admin level 1),United Kingdom,Sus scrofa,2010_01_12_12 +62,flu_00063,2009-08-05 to 2009-09-08,H5N1 subtype,"Meeker County (admin level 2), Minnesota (admin level 1)",United States of America,Galliformes; Anas; Homo sapiens; Aves,2009_08_07_2; 2009_09_01_1; 2009_09_08_1 +63,flu_00064,2016-02-08 to 2016-02-08,H5N2 subtype,South Africa (country),South Africa,Aves,2016_02_08_3 +64,flu_00065,2011-04-05 to 2011-06-06,H5N1 subtype,"Distretto di Binh Minh (admin level 2), Vĩnh Long Province (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1); Bac Kan (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Gia Nghia (admin level 2), Đắk Nông (admin level 1); Tan Binh (admin level 2), Ho Chi Minh City (admin level 1); Distretto di Tu Son (admin level 2), Bac Ninh (admin level 1); Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1); Ha Nam (admin level 1)",Vietnam,Galliformes; Gallus gallus; Aves,2011_04_05_3; 2011_05_25_2; 2011_06_10_1; 2011_04_28_5 +65,flu_00066,2014-03-25 to 2014-06-04,H7N9 subtype,Jiangsu Province (Republic of China) (admin level 1); Shandong (admin level 1); Anhui Province (admin level 1); Guangdong (admin level 1); Shanghai (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2014_04_10_9; 2014_05_23_1; 2014_05_16_1; 2014_06_06_1; 2014_05_30_1; 2014_04_10_4; 2014_05_16_2 +66,flu_00067,2010-03-26 to 2010-06-07,H5N1 subtype,"Ezhou (admin level 2), Hubei (admin level 1); Hong Kong (admin level 1); Tibet (admin level 1)",People's Republic of China,Anser indicus; Larus brunnicephalus; Aves; Mareca penelope; Homo sapiens; Cepora; Pyrrhocorax pyrrhocorax,2010_07_12_1; 2010_04_02_2; 2010_06_11_1; 2010_07_16_1; 2010_06_07_4 +67,flu_00068,2015-09-30 to 2015-11-20,H5N8 subtype,"South Jeolla Province (admin level 1); North Chungcheong Province (admin level 1); district de Eumseong (admin level 2), North Chungcheong Province (admin level 1); North Pyeongan Province, Republic of Korea (admin level 1)",South Korea,Anas; Gallus gallus; Aves,2015_11_20_4; 2015_09_30_4; 2015_10_05_5; 2015_10_28_4 +68,flu_00069,2012-05-07 to 2012-05-22,H5N2 subtype,Taichung (admin level 1),Taiwan,Anas; Gallus gallus,2012_05_22_3 +69,flu_00070,2009-09-14 to 2009-09-14,H1N1 subtype,"Riley County (admin level 2), Kansas (admin level 1); West Kansas (admin level 1)",United States of America,Homo sapiens,2009_09_14_3 +70,flu_00071,2007-06-12 to 2007-06-12,H5N1 subtype,Selangor (admin level 1); Kuala Lumpur (admin level 1),Malaysia,Galliformes; Gallus gallus,2007_06_12_3 +71,flu_00072,2009-01-14 to 2009-05-28,H5N1 subtype,"Darjeeling District (admin level 2), West Bengal (admin level 1); West Bengal (admin level 1); Balrampur district (admin level 2), Uttar Pradesh (admin level 1); Assam (admin level 1); Districte de North Dinajpur (admin level 2), West Bengal (admin level 1); Uttar Dinajpur district (admin level 2), West Bengal (admin level 1); Manipur (admin level 1)",India,Galliformes; Anas; Anser; Gallus gallus; Aves,2009_04_08_2; 2009_02_23_6; 2009_01_14_5; 2009_06_05_2; 2009_03_02_4; 2009_03_23_2; 2009_06_01_2; 2009_03_02_2; 2009_03_23_1; 2009_02_06_4 +72,flu_00073,2011-01-14 to 2011-04-28,H5N1 subtype,"Padangsidimpuan (admin level 2), North Sumatra Province (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); North Padang Lawas Regency (admin level 2), North Sumatra Province (admin level 1); Bengkulu Province (admin level 1); North Sulawesi Province (admin level 1); Kotamobagu (admin level 2), North Sulawesi Province (admin level 1); South Tangerang (admin level 2), Banten Province (admin level 1); Gorontalo Province (admin level 1); Samarinda (admin level 2), East Kalimantan (admin level 1); Bolaang Mongondow Utara (admin level 2), North Sulawesi Province (admin level 1); Gunungkidul (admin level 2), Special Region of Yogyakarta (admin level 1); Kabupaten Karawang (admin level 2), West Java Province (admin level 1); East Java (admin level 1); West Sumatra (admin level 1); Lampung Province (admin level 1); West Java Province (admin level 1); Padang Lawas Utara (admin level 2), North Sumatra Province (admin level 1); Surabaya (admin level 2), East Java (admin level 1); Riau Islands Province (admin level 1); Desa Bangli (admin level 2), Bali (admin level 1)",Indonesia,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2011_03_15_10; 2011_03_29_7; 2011_02_28_3; 2011_01_28_7; 2011_03_29_4; 2011_02_11_9; 2011_03_07_4; 2011_01_14_4; 2011_02_22_5; 2011_01_28_4; 2011_01_24_3; 2011_04_28_2; 2011_04_12_2; 2011_03_22_6 +73,flu_00074,2010-01-05 to 2010-01-20,H5N1 subtype,"district de Murshidabad (admin level 2), West Bengal (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Assam (admin level 1); Murshidabad district (admin level 2), West Bengal (admin level 1)",India,Galliformes; Anas; Anser; Gallus gallus; Aves,2010_01_20_2; 2010_01_12_2 +74,flu_00075,2012-11-30 to 2012-12-31,H5N1 subtype,"West Java Province (admin level 1); Banten Province (admin level 1); Bogor (admin level 2), West Java Province (admin level 1); Semarang (admin level 2), Central Java Province (admin level 1)",Indonesia,Homo sapiens; Anas; Galliformes; Gallus gallus,2012_02_02_8; 2012_12_27_2; 2012_12_14_2; 2012_12_21_4; 2012_12_21_1; 2013_01_25_1 +75,flu_00076,2010-07-02 to 2010-07-18,H5N1 subtype,"Juneau, Alaska (admin level 2), Alaska (admin level 1); Gia Lai (admin level 1)",United States of America,Galliformes; Anas; Gallus gallus; Aves,2010_08_16_5; 2010_07_02_1; 2010_08_18_5 +76,flu_00077,2008-02-01 to 2008-10-16,H5N1 subtype,"South Jakarta (admin level 2), Jakarta (admin level 1); Malang (admin level 2), East Java (admin level 1); Bekasi (admin level 2), West Java Province (admin level 1); Riau Province (admin level 1); Kabupaten Bekasi (admin level 2), West Java Province (admin level 1); Jakarta (admin level 1); Banten Province (admin level 1); Asahan (admin level 2), North Sumatra Province (admin level 1); West Java Province (admin level 1); North Sumatra Province (admin level 1); Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2008_09_26_4; 2008_08_15_3; 2008_09_11_4; 2008_05_23_3; 2008_02_01_4; 2008_10_16_3; 2008_09_08_3; 2008_04_03_5; 2008_06_26_4; 2008_08_11_5 +77,flu_00078,2010-12-07 to 2011-03-15,H5N1 subtype,"Anseong Chhī (admin level 2), Gyeonggi Province (admin level 1); South Jeolla Province (admin level 1); Sacheon (admin level 2), South Gyeongsang Province (admin level 1); Pyeongtaek (admin level 2), Gyeonggi Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1); North Jeolla Province (admin level 1); North Chungcheong Province (admin level 1); Yeongam County (admin level 2), South Jeolla Province (admin level 1); Icheon (admin level 2), Gyeonggi Province (admin level 1); Gyeonggi Province (admin level 1); Sangju (admin level 2), North Gyeongsang Province (admin level 1)",South Korea,Galliformes; Aves; Anas platyrhynchos; Gallus gallus; Anas; Homo sapiens; Aix galericulata,2011_01_28_6; 2010_12_09_1; 2011_01_24_5; 2011_03_15_8; 2011_01_14_2; 2011_01_14_5; 2010_12_17_1 +78,flu_00079,2014-02-20 to 2014-04-10,H5N1 subtype,Kratié Province (admin level 1); Kampot Province (admin level 1); Kampong Chhnang Province (admin level 1); Kandal Province (admin level 1),Cambodia,Galliformes; Homo sapiens; Aves; Gallus gallus,2014_03_07_12; 2014_03_07_8; 2014_04_10_8; 2014_03_20_7; 2014_04_10_6 +79,flu_00080,2011-11-12 to 2012-02-26,H5N1 subtype,Dhaka Division (admin level 1); Khulna Division (admin level 1),Bangladesh,Galliformes; Homo sapiens; Gallus gallus; Aves,2012_02_02_2; 2011_11_17_5; 2011_12_22_2; 2012_03_06_6 +80,flu_00081,2011-08-02 to 2011-09-15,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Galliformes; Anas; Gallus gallus; Aves,2011_08_02_2; 2011_09_15_3; 2011_09_15_8 +81,flu_00082,2014-11-28 to 2015-03-06,H5N1 subtype,Beni Suef Governorate (admin level 1); Beheira Governorate (admin level 1); Faiyum Governorate (admin level 1); Cairo Governorate (admin level 1); Sohag Governorate (admin level 1); Minya Governorate (admin level 1),Egypt,Galliformes; Homo sapiens; Aves,2014_12_19_6; 2015_01_30_8; 2015_03_02_13; 2015_03_13_5; 2014_12_09_6; 2015_03_06_7; 2014_12_23_6; 2015_01_23_12; 2015_02_13_6 +82,flu_00083,2011-02-10 to 2011-05-09,H5N1 subtype,Alexandria Governorate (admin level 1),Egypt,Galliformes; Homo sapiens; Gallus gallus,2011_06_07_5; 2011_03_15_9; 2011_04_12_4; 2011_04_05_6 +83,flu_00084,2012-03-10 to 2012-03-10,H5N1 subtype,"Tripura (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1)",India,Galliformes; Aves,2012_03_23_7 +84,flu_00085,2007-02-07 to 2007-04-06,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Galliformes; Aves; Gallus gallus; Aegypius monachus; Merops philippinus; Columbidae,2007_02_07_4; 2010_11_05_1; 2007_04_06_2 +85,flu_00086,2016-04-26 to 2016-07-26,H7N9 subtype,"Tianjin (admin level 1); Hubei (admin level 1); Fujian (admin level 1); Jiangxi (admin level 1); Hebei (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1); Beijing (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Shenyang (admin level 2), Liaoning (admin level 1); Langfang (admin level 2), Hebei (admin level 1); Liaoning (admin level 1); Henan (admin level 1); Jiangsu (admin level 1)",People's Republic of China,Galliformes; Homo sapiens,2016_07_29_5; 2016_07_12_5; 2016_06_07_8; 2016_06_10_2; 2016_06_17_4; 2016_07_26_2; 2016_09_01_3; 2016_05_20_7 +86,flu_00087,2007-09-21 to 2008-02-29,H5N1 subtype,"Hong Kong (admin level 1); Guangdong (admin level 1); Turpan (admin level 2), Xinjiang (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Aves; Egretta garzetta,2007_12_18_1; 2008_01_10_4; 2007_11_30_1; 2008_03_07_1; 2007_09_21_2 +87,flu_00088,2013-03-25 to 2013-06-27,H7N9 subtype,"Anhui (admin level 1); Jiangxi (admin level 1); Hangzhou (kapital sa lalawigan sa Republikang Popular sa Tsina) (admin level 2), Zhejiang (admin level 1); Hebei (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Jiangsu (admin level 1)",People's Republic of China,Galliformes; Aves; Gallus gallus; Anas; Anser; Homo sapiens; Columbidae,2013_04_12_5; 2013_05_24_1; 2013_05_30_5; 2013_05_03_3; 2013_04_08_1; 2013_06_28_2; 2013_04_30_3; 2013_05_30_1; 2013_08_23_2; 2013_05_13_3; 2015_03_02_10; 2013_05_13_1; 2013_04_12_1 +88,flu_00089,2015-11-25 to 2016-01-22,H5N6 subtype,"Ganzhou (admin level 2), Jiangxi (admin level 1); Guangdong (admin level 1)",People's Republic of China,Anas; Homo sapiens; Aves; Gallus gallus,2016_01_08_1; 2016_01_22_1; 2015_12_18_1; 2016_01_15_6; 2015_11_25_1; 2016_01_22_9; 2016_01_08_6 +89,flu_00090,2014-07-22 to 2014-07-22,H5N2 subtype,Western Cape (admin level 1),South Africa,Galliformes; Aves,2014_10_15_2 +90,flu_00091,2015-05-15 to 2015-05-15,H5N8 subtype,"Whitley County (admin level 2), Indiana (admin level 1)",United States of America,Galliformes; Anas; Gallus gallus; Aves,2015_05_15_5 +91,flu_00092,2016-02-08 to 2016-02-08,Influenza A virus,Guangdong (admin level 1),People's Republic of China,Gallus gallus,2016_02_08_2 +92,flu_00093,2013-05-30 to 2013-05-30,H7N9 subtype,Bar Municipality (admin level 1); Beijing (admin level 1),Montenegro,Homo sapiens,2013_05_30_4 +93,flu_00094,2017-07-05 to 2017-07-06,H3N8 subtype,United States of America (country),United States of America,Homo sapiens; Aves,2017_07_14_1; 2017_07_05_1 +94,flu_00095,2010-04-17 to 2010-04-25,H5N1 subtype,"Dhaka Division (admin level 1); Apriltsi Municipality (admin level 2), Lovech Province (admin level 1)",Bangladesh,Galliformes; Aves,2010_05_04_1; 2010_05_28_2 +95,flu_00096,2011-02-16 to 2011-03-15,H5N1 subtype,"Tripura (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Kolkata district (admin level 2), West Bengal (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1)",India,Galliformes; Anas; Aves,2011_03_15_3; 2011_02_22_4; 2011_03_22_2 +96,flu_00097,2015-04-17 to 2015-05-15,H5N2 subtype,Taichung (admin level 1),Taiwan,Anas; Aves,2015_04_17_5; 2015_05_15_3 +97,flu_00098,2010-02-26 to 2010-03-09,H5N1 subtype,"Jongtchong-gu (admin level 2), Suwon (admin level 1)",South Korea,Galliformes; Anas; Sus scrofa; Gallus gallus; Aves,2010_03_09_2 +98,flu_00099,2013-02-15 to 2013-05-23,H5N1 subtype,Guizhou (admin level 1); Tibet Autonomous Region (admin level 1); Zhejiang (admin level 1); Tibet (admin level 1); Shanghai (admin level 1),People's Republic of China,Galliformes; Anser; Homo sapiens; Aves; Gallus gallus,2013_04_12_3; 2013_02_15_3; 2013_05_23_4 +99,flu_00100,2009-12-11 to 2010-01-20,H5N1 subtype,"Kompung Chinang (admin level 2), Kampong Chhnang Province (admin level 1); Ponhea Kraek District (admin level 2), Kampong Cham Province (admin level 1)",Cambodia,Homo sapiens; Aves,2010_01_20_1; 2009_12_22_3 +100,flu_00101,2009-04-12 to 2009-05-05,H5N1 subtype,"Hong Kong (admin level 1); Qinghai (admin level 1); Lhasa (admin level 2), Tibet (admin level 1)",People's Republic of China,Galliformes; Aves,2009_04_28_2; 2009_05_11_2; 2009_05_22_1 +101,flu_00102,2013-01-25 to 2013-03-01,H5N1 subtype,Kampong Cham Province (admin level 1); Kampot Province (admin level 1); Kampong Speu Province (admin level 1),Cambodia,Galliformes; Homo sapiens; Aves,2013_02_01_3; 2013_02_15_2; 2013_03_01_3; 2013_01_25_2 +102,flu_00103,2014-12-13 to 2014-12-13,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves,2014_12_23_4 +103,flu_00104,2010-08-06 to 2010-12-17,H5N1 subtype,"Kalimantan Selatan (admin level 1); Luwu Utara (admin level 2), South Sulawesi (admin level 1); Aceh (admin level 1); Barru (admin level 2), South Sulawesi (admin level 1); East Java (admin level 1); Kabupaten Pinrang (admin level 2), South Sulawesi (admin level 1); West Sumatra (admin level 1); Palopo (admin level 2), South Sulawesi (admin level 1); Bengkulu Province (admin level 1); Bulukumba (admin level 2), South Sulawesi (admin level 1); Luwu Timur (admin level 2), South Sulawesi (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Kepulauan Riau (admin level 1)",Indonesia,Galliformes; Homo sapiens; Anas; Gallus gallus; Aves,2010_08_20_4; 2010_10_08_3; 2010_10_15_3; 2010_08_26_2; 2010_12_17_2; 2010_08_18_4; 2010_12_03_7; 2010_09_09_2; 2010_10_01_2; 2010_09_24_1; 2010_08_18_6; 2010_10_27_1; 2010_08_16_6; 2010_08_16_4 +104,flu_00105,2011-05-18 to 2011-06-19,H5N2 subtype,Western Cape (admin level 1),South Africa,Galliformes; Homo sapiens; Aves,2011_06_20_4; 2011_05_18_1 +105,flu_00106,2016-01-16 to 2016-01-19,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Galliformes; Homo sapiens,2016_01_22_10; 2016_01_22_11 +106,flu_00107,2014-06-09 to 2015-01-08,H7N9 subtype,"Dongguan (admin level 2), Guangdong (admin level 1); Jiangsu Province (Republic of China) (admin level 1); Hunan (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Chaoyang (admin level 2), Liaoning (admin level 1); Guangdong (admin level 1); Beijing (admin level 1); Hong Kong (admin level 1); Urumqi (admin level 2), Xinjiang (admin level 1); Shanghai (admin level 1); Zhuhai (admin level 2), Guangdong (admin level 1); Jiangsu (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Aves; Gallus gallus,2014_12_23_5; 2014_11_12_2; 2014_11_03_10; 2014_10_24_5; 2014_06_23_3; 2014_12_09_5; 2015_01_08_11; 2015_01_08_6; 2014_12_16_3; 2014_07_21_1; 2014_12_29_9 +107,flu_00108,2012-03-17 to 2012-03-19,H5N2 subtype,Waterschap Limburg (admin level 1),Netherlands,Galliformes; Aves,2012_03_23_4 +108,flu_00109,2016-05-07 to 2016-06-18,H5N1 subtype,Al Sharqia Governorate (admin level 1); Giza Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Homo sapiens; Anas; Gallus gallus; Aves,2016_10_17_6; 2016_06_24_3; 2016_05_20_1 +109,flu_00110,2009-06-24 to 2009-06-24,H1N1 subtype,Buenos Aires Province (admin level 1),Argentina,Sus scrofa,2009_07_21_1 +110,flu_00111,2010-11-02 to 2010-11-02,H5N1 subtype,Connecticut (admin level 1),United States of America,Homo sapiens,2010_11_05_2 +111,flu_00112,2013-10-28 to 2013-11-01,H5N1 subtype,West Java Province (admin level 1),Indonesia,Homo sapiens; Gallus gallus,2013_11_26_2; 2013_10_28_3 +112,flu_00113,2009-04-14 to 2009-05-11,H5N1 subtype,"Giles County (admin level 2), Tennessee (admin level 1); Lincoln County (admin level 2), Mississippi (admin level 1); Kentucky (admin level 1)",United States of America,Galliformes; Homo sapiens; Aves; Gallus gallus,2009_05_11_3; 2009_04_14_2 +113,flu_00114,2010-02-19 to 2010-03-11,H5N1 subtype,Sagaing Region (admin level 1); Yangon Region (admin level 1),Myanmar,Galliformes; Anas; Gallus gallus; Aves,2010_03_09_3; 2010_03_11_2 +114,flu_00115,2012-05-22 to 2012-05-22,H5N1 subtype,Tripura (admin level 1),India,Galliformes; Aves,2012_05_22_1 +115,flu_00116,2011-01-01 to 2011-03-26,H5N1 subtype,"Bhola District (admin level 2), Barisal Division (admin level 1); Noakhali District (admin level 2), Chattogram Division (admin level 1); Kalamazoo County (admin level 2), Michigan (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1); Rajshahi Division (admin level 1); Gazipur District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1); Kishoreganj District (admin level 2), Dhaka Division (admin level 1)",Bangladesh,Homo sapiens; Galliformes; Gallus gallus; Aves,2011_01_14_3; 2011_02_22_3; 2011_03_15_1; 2011_02_08_2; 2011_03_29_3; 2011_04_05_7 +116,flu_00117,2010-09-10 to 2010-09-10,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Aves,2010_09_10_1 +117,flu_00118,2013-04-24 to 2013-04-24,H7N9 subtype,Taiwan (country),Taiwan,Galliformes; Homo sapiens,2013_04_30_5 +118,flu_00119,2011-12-12 to 2012-01-12,H5N1 subtype,"Sangdang-gu (admin level 2), Cheongju (admin level 1); Hong Kong (admin level 1); Tibet (admin level 1)",People's Republic of China,Chroicocephalus ridibundus; Galliformes; Homo sapiens; Aves,2011_12_22_5; 2011_12_16_4; 2012_02_02_9 +119,flu_00120,2007-09-26 to 2007-09-26,H5N1 subtype,Nigeria (country),Nigeria,Galliformes,2008_08_15_2 +120,flu_00121,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Sus scrofa; Aves,2006_12_01_1 +121,flu_00122,2014-12-16 to 2014-12-29,H5N2 subtype,British Columbia (admin level 1),Canada,Galliformes; Homo sapiens; Aves; Gallus gallus,2014_12_23_1; 2014_12_16_2; 2014_12_29_3 +122,flu_00123,2015-06-12 to 2015-07-31,H5N2 subtype,"Macomb County (admin level 2), Michigan (admin level 1); Arizona (admin level 1); Oconto County (admin level 2), Wisconsin (admin level 1); Wright County (admin level 2), Minnesota (admin level 1); Brown County (kondado sa Estados Unidos, Minnesota) (admin level 2), Minnesota (admin level 1); Renville County (admin level 2), North Dakota (admin level 1); Alaska (admin level 1); Iowa (admin level 1); Dixon County (admin level 2), Nebraska (admin level 1); Hamilton County, Iowa (admin level 2), Iowa (admin level 1)",United States of America,Galliformes; Aves; Anatidae; Gallus gallus; Branta canadensis; Homo sapiens,2016_09_01_1; 2015_07_08_2; 2016_02_22_2; 2015_07_08_5; 2015_06_19_4; 2015_06_12_4; 2015_06_26_4 +123,flu_00124,2011-05-14 to 2011-05-21,H5N1 subtype,Cairo Governorate (admin level 1); Aswan Governorate (admin level 1),Egypt,Homo sapiens,2011_06_20_6 +124,flu_00125,2015-03-27 to 2015-03-27,H5N1 subtype,"Silistra Province (admin level 1); Burgas Province (admin level 1); Obshtina Iskŭr (munisipyo sa Bulgaria) (admin level 2), Pleven Province (admin level 1)",Bulgaria,Chroicocephalus ridibundus; Galliformes; Pelecanidae,2015_03_27_1 +125,flu_00126,2008-01-04 to 2008-02-23,H5N1 subtype,"Natore District (admin level 2), Rajshahi Division (admin level 1); Barisal Division (admin level 1); Chittagong (admin level 2), Chattogram Division (admin level 1); Distrik Jessore (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1); Mymensingh Division (admin level 1); Dakshin Dinajpur district (admin level 2), West Bengal (admin level 1); Meherpur (admin level 2), Khulna Division (admin level 1)",Bangladesh,Galliformes; Aves; Gallus gallus; Anas; Corvus; Columbidae; Podiceps nigricollis,2008_02_08_4; 2008_02_20_2; 2008_01_10_3; 2008_02_08_2; 2008_02_01_1; 2008_01_25_2; 2008_03_03_2; 2008_01_18_3 +126,flu_00127,2008-11-14 to 2008-12-12,H5N1 subtype,"Jakarta (admin level 1); Central Sulawesi Province (admin level 1); Bandung Regency (admin level 2), West Java Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2008_11_26_2; 2008_12_12_4; 2008_11_26_3; 2008_11_14_5 +127,flu_00128,2007-12-14 to 2007-12-25,H5N1 subtype,"Lower Saxony (admin level 1); Berlin (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1); Neubrandenburg District (admin level 1)",Germany,Galliformes; Gallus gallus; Aves,2008_10_09_4; 2007_12_21_3; 2008_01_25_3; 2008_01_04_5 +128,flu_00129,2009-11-28 to 2010-04-09,H5N1 subtype,"Thanh Hóa (admin level 1); Khanh Hoa (admin level 1); Cao Bang (admin level 1); Kon Tum (admin level 1); Ca Mau (admin level 1); Ha Tinh (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Bac Kan (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1)",Vietnam,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2010_02_19_2; 2009_12_14_2; 2010_01_27_5; 2010_04_19_3; 2010_03_01_6; 2010_04_12_3; 2010_01_12_5 +129,flu_00130,2010-06-29 to 2010-06-29,H5N1 subtype,Tuva (admin level 1),Russia,Podiceps cristatus; Aves,2010_06_29_1 +130,flu_00131,2014-12-16 to 2015-03-02,H5N2 subtype,"Whatcom County (admin level 2), Washington (admin level 1); Washington (admin level 1); Benton County (admin level 2), Mississippi (admin level 1); Clallam County (admin level 2), Washington (admin level 1)",United States of America,Galliformes; Anas; Gallus gallus; Aves,2015_01_08_7; 2015_03_02_2; 2015_01_23_10; 2014_12_16_1; 2014_12_29_2 +131,flu_00132,2011-01-29 to 2011-02-12,H5N1 subtype,"Russei Keo District (admin level 2), Phnom Penh (admin level 1); Banteay Meanchey Province (admin level 1); Kandal Province (admin level 1)",Cambodia,Galliformes; Homo sapiens; Gallus gallus,2011_02_11_4; 2011_02_11_8; 2011_02_28_5 +132,flu_00133,2011-09-06 to 2011-09-15,H5N1 subtype,"Manikganj District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1); Chuadanga District (admin level 2), Khulna Division (admin level 1)",Bangladesh,Galliformes; Gallus gallus,2011_09_15_2; 2011_09_15_6 +133,flu_00134,2008-08-28 to 2008-08-28,H5N1 subtype,"Parakou (admin level 2), Borgou Department (admin level 1); Lokossa (admin level 2), Mono Department (admin level 1)",Benin,Galliformes; Gallus gallus,2008_08_28_2 +134,flu_00135,2011-02-28 to 2011-02-28,H5N1 subtype,Vietnam (country),Vietnam,Galliformes; Aves,2011_02_28_4 +135,flu_00136,2009-07-24 to 2009-07-24,H1N1 subtype,Australia (country),Australia,Galliformes; Sus scrofa,2009_08_03_3 +136,flu_00137,2007-07-03 to 2007-07-17,H5N1 subtype,"Buryatia (admin level 1); Tomsk Oblast (admin level 1); East Siberian Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1)",Russia,Galliformes; Aves,2007_07_20_2; 2007_07_05_3 +137,flu_00138,2008-07-18 to 2008-09-22,H5N1 subtype,"Long An (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Ben Tre (admin level 1)",Vietnam,Galliformes; Anas; Gallus gallus; Aves; Homo sapiens,2008_08_11_4; 2008_10_02_2; 2008_08_15_4; 2008_08_22_2; 2008_07_18_2 +138,flu_00139,2007-11-04 to 2007-11-04,H5N1 subtype,Fukui Prefecture (admin level 1),Japan,Galliformes; Aves,2007_02_16_3 +139,flu_00140,2014-11-26 to 2014-12-16,H5N1 subtype,"Chandigarh (admin level 1); Kottayam district (admin level 2), Kerala (admin level 1)",India,Galliformes; Anas; Anser; Aves,2014_11_26_2; 2014_12_19_5 +140,flu_00141,2014-11-25 to 2015-01-08,Influenza A virus,Miyazaki Prefecture (admin level 1),Japan,Galliformes; Gallus gallus; Aves,2015_01_08_5; 2014_11_25_1 +141,flu_00142,2011-06-29 to 2011-08-01,H5N1 subtype,"Wright County (admin level 2), Iowa (admin level 1); Minnesota (admin level 1)",United States of America,Galliformes; Homo sapiens; Aves,2011_07_06_4; 2011_08_11_3 +142,flu_00143,2012-01-07 to 2012-03-03,H5N1 subtype,"West Java Province (admin level 1); Bengkulu Province (admin level 1); North Jakarta (admin level 2), Jakarta (admin level 1); North Sumatra Province (admin level 1)",Indonesia,Anas; Homo sapiens; Gallus gallus,2012_03_12_5; 2012_02_02_8; 2012_02_22_6; 2012_02_29_6 +143,flu_00144,2010-03-29 to 2010-03-29,H5N1 subtype,Varna Province (admin level 1),Bulgaria,Aves,2010_04_02_1 +144,flu_00145,2013-10-28 to 2013-12-6,H7N9 subtype,"Guangdong (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Anas; Homo sapiens,2014_01_09_7; 2013_10_28_4; 2013_12_06_3; 2013_11_08_4 +145,flu_00146,2015-06-10 to 2015-06-10,Influenza A virus,"Gangjin (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1)",South Korea,Galliformes; Anas; Aves,2015_09_18_1 +146,flu_00147,2007-08-14 to 2007-11-01,H5N1 subtype,"Bogor Regency (admin level 2), West Java Province (admin level 1); West Jakarta (admin level 2), Jakarta (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Jakarta (admin level 1); Tangerang Selatan (admin level 2), Banten Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Anas; Gallus gallus,2007_08_14_2; 2012_02_02_8; 2007_10_05_3; 2007_11_01_4 +147,flu_00148,2013-05-01 to 2013-06-17,H7N3 subtype,"Guanajuato (admin level 1); Aguascalientes (admin level 1); Puebla (admin level 1); Palmar de Bravo Municipality (admin level 2), Puebla (admin level 1); Jalisco (admin level 1)",Mexico,Galliformes; Homo sapiens; Aves,2013_06_17_2; 2013_05_13_2; 2013_05_23_1 +148,flu_00149,2014-01-01 to 2014-01-01,H9N2 subtype,"Hong Kong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Homo sapiens,2014_01_09_9 +149,flu_00150,2009-06-29 to 2009-07-31,H5N1 subtype,"Merangin Regency (admin level 2), Jambi Province (admin level 1); Jambi Province (admin level 1); South Sulawesi (admin level 1); Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); West Java Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2009_07_10_2; 2009_08_07_3; 2009_06_29_2; 2009_07_21_2 +150,flu_00151,2008-03-31 to 2008-05-12,H5N1 subtype,"Jeonju (admin level 2), North Jeolla Province (admin level 1); Santa Terezinha do Progresso (admin level 2), Santa Catarina (admin level 1); Busan (admin level 1); Seongnam (admin level 2), Gyeonggi Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1); South Gyeongsang Province (admin level 1); Daegu (admin level 1); Gimje (admin level 2), North Jeolla Province (admin level 1)",South Korea,Galliformes; Anas; Gallus gallus; Aves,2008_04_15_3; 2008_07_25_1; 2008_05_16_3; 2008_04_18_3; 2008_05_09_2; 2008_05_02_4 +151,flu_00152,2016-02-01 to 2016-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Corvus,2016_02_22_1 +152,flu_00153,2015-01-30 to 2015-04-17,H5N1 subtype,"Amethi district (admin level 2), Uttar Pradesh (admin level 1); Kollam (admin level 2), Kerala (admin level 1); Sultanpur district (admin level 2), Uttar Pradesh (admin level 1)",India,Anas; Columbidae; Gallus gallus; Aves; Corvus splendens,2015_03_27_2; 2015_04_17_4; 2015_01_30_2; 2015_03_20_4 +153,flu_00154,2011-04-21 to 2011-06-07,H5N1 subtype,Phnom Penh (admin level 2); Prey Veng Province (admin level 1),Cambodia,Galliformes; Homo sapiens,2011_06_20_5; 2011_04_28_7 +154,flu_00155,2008-06-03 to 2008-06-03,H5N1 subtype,"Aomori Prefecture (admin level 1); Apriltsi Municipality (admin level 2), Lovech Province (admin level 1)",Bulgaria,Aves,2008_06_06_2 +155,flu_00156,2016-10-28 to 2016-12-07,H5N8 subtype,"West Pomeranian Voivodeship (admin level 1); Prasia Elysiorum (admin level 2), Lubusz Voivodeship (admin level 1)",Poland,Galliformes; Anas; Gallus gallus; Aves,2016_12_29_6; 2016_12_01_5; 2016_11_15_6 +156,flu_00157,2006-11-14 to 2007-03-20,H5N1 subtype,"Hong Kong (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Galliformes; Aves; Corvus splendens; Lonchura punctulata; Falco peregrinus; Psittacidae; Anas; Homo sapiens; Lanius schach; Pionus menstruus,2007_02_16_1; 2007_01_18_1; 2007_03_20_1; 2006_11_14_1; 2007_01_22_1; 2007_02_07_1 +157,flu_00158,2008-10-24 to 2008-10-24,H5N3 subtype,"Goerlitz District (admin level 2), Dresden District (admin level 1); Leipzig District (admin level 1)",Germany,Galliformes; Anas; Aves,2008_10_24_3 +158,flu_00159,2009-08-29 to 2009-08-29,H5N1 subtype,"distretto de Chittagong (admin level 2), Chattogram Division (admin level 1)",Bangladesh,Galliformes,2009_09_25_2 +159,flu_00160,2007-03-26 to 2007-06-15,H5N1 subtype,"Dinajpur District, Bangladesh (admin level 2), Rangpur Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1); distretto de Magura (admin level 2), Khulna Division (admin level 1)",Bangladesh,Galliformes; Homo sapiens; Gallus gallus; Aves,2007_05_03_3; 2007_06_15_2; 2007_04_02_3; 2007_06_22_3; 2007_05_11_2; 2009_01_14_2 +160,flu_00161,2011-09-17 to 2011-09-17,H5N1 subtype,"Mahalapye (admin level 2), Central District (admin level 1)",Botswana,Homo sapiens,2011_11_17_8 +161,flu_00162,2011-09-15 to 2011-12-06,H5N1 subtype,"Bali (admin level 1); South Sulawesi (admin level 1); Special Region of Yogyakarta (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Mataram (admin level 2), West Nusa Tenggara (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); North Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Kabupatèn Lombok Wétan (admin level 2), West Nusa Tenggara (admin level 1); Central Java Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves; Gallus gallus,2011_11_17_9; 2011_10_18_3; 2011_12_06_3; 2011_10_18_1; 2011_10_31_1; 2011_09_15_4; 2011_10_24_2; 2011_09_21_4; 2011_10_24_1; 2011_10_07_1 +162,flu_00163,2008-06-13 to 2008-08-01,H5N1 subtype,Hong Kong (admin level 1); Guangdong (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Anas; Gallus gallus; Aves,2008_08_01_2; 2008_06_19_4; 2008_06_26_2; 2008_06_13_1; 2011_12_22_3; 2008_06_19_2 +163,flu_00164,2007-02-26 to 2007-02-26,H5N1 subtype,"Naogaon District (admin level 2), Rajshahi Division (admin level 1)",Bangladesh,Galliformes; Aves; Gallus gallus; Anas; Homo sapiens; Columbidae,2008_01_18_3; 2008_10_24_2 +164,flu_00165,2016-11-15 to 2016-12-20,H5N6 subtype,"Yangju (admin level 2), Gyeonggi Province (admin level 1); Cheongju (admin level 2), North Chungcheong Province (admin level 1); Muan megye (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1)",South Korea,Galliformes; Aves; Gallus gallus; Anas; Homo sapiens; Sus scrofa,2016_12_29_3; 2016_11_18_8; 2016_11_15_7; 2016_12_01_10; 2016_12_29_7; 2016_12_20_15 +165,flu_00166,2013-10-28 to 2013-10-28,H7N2 subtype,New South Wales (admin level 1),Australia,Galliformes; Anas; Gallus gallus,2013_10_28_7; 2013_10_28_2 +166,flu_00167,2013-10-22 to 2013-11-15,H5N1 subtype,"Romdoul District (admin level 2), Svay Rieng Province (admin level 1); Baray (distrito) (admin level 2), Kampong Thom Province (admin level 1); Battambang Province (admin level 1); Pursat Province (admin level 1); Pailin Province (admin level 1); Kampong Speu Province (admin level 1)",Cambodia,Galliformes; Homo sapiens; Gallus gallus,2013_11_08_3; 2013_11_15_2; 2013_10_28_5; 2013_11_01_2 +167,flu_00168,2014-12-29 to 2014-12-29,H5N8 subtype,Russia (country),Russia,Galliformes; Gallus gallus; Aves,2014_12_29_1 +168,flu_00169,2015-08-18 to 2015-08-18,H5N2 subtype,Mexico (country),Mexico,Galliformes; Aves,2015_08_18_2 +169,flu_00170,2014-08-12 to 2014-09-30,H5N6 subtype,"District de Thanh Xuan (admin level 2), Hanoi (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Ha Tinh (admin level 1); Lao Cai (admin level 1)",Vietnam,Galliformes; Anas; Homo sapiens; Aves; Gallus gallus,2014_08_29_1; 2014_09_30_3; 2014_08_15_1; 2014_09_10_1 +170,flu_00171,2010-03-01 to 2010-04-20,H5N1 subtype,"Jakarta (admin level 1); Kecamatan Karangasem (admin level 2), Bali (admin level 1)",Indonesia,Homo sapiens,2010_04_26_3; 2010_03_01_5 +171,flu_00172,2007-06-21 to 2007-07-17,H5N1 subtype,South Bohemia Region (admin level 1); South Moravian Region (admin level 1); Central Bohemian Region (admin level 1),Czech Republic,Galliformes; Phasianidae; Aves,2007_06_22_4; 2007_07_03_2; 2007_07_17_2 +172,flu_00173,2006-03-26 to 2006-03-26,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Galliformes; Homo sapiens; Gallus gallus,2008_06_02_3 +173,flu_00174,2015-11-09 to 2015-11-09,H5N8 subtype,"East Siberian Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1)",Russia,Galliformes; Anas; Gallus gallus; Aves,2015_11_09_1 +174,flu_00175,2006-12-26 to 2006-12-26,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Phitsanulok (admin level 1)",Thailand,Anas; Columbidae; Aves,2007_01_22_2 +175,flu_00176,2012-01-16 to 2012-03-07,H5N1 subtype,"Kien Giang (admin level 1); Bac Lieu (admin level 1); Thanh Hoa (admin level 2), Thanh Hóa (admin level 1); Ha Tinh (admin level 1); Ho Chi Minh City (admin level 1); Tra Vinh (admin level 2), Trà Vinh (admin level 1)",Vietnam,Galliformes; Homo sapiens; Aves,2012_02_29_4; 2012_02_22_5; 2012_03_12_6; 2012_02_02_16 +176,flu_00177,2015-04-17 to 2015-05-22,H5N1 subtype,"Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1)",Vietnam,Anas; Aves,2015_04_17_6; 2015_05_22_6 +177,flu_00178,2013-10-28 to 2013-11-04,H5N1 subtype,"Tan Phu (admin level 2), Ho Chi Minh City (admin level 1)",Vietnam,Galliformes; Anas; Gallus gallus; Aves,2013_11_08_1; 2013_10_28_6 +178,flu_00179,2007-02-16 to 2007-02-16,H5N1 subtype,Orenburg Oblast (admin level 1),Russia,Aves,2007_02_16_4 +179,flu_00180,2010-06-29 to 2010-08-18,H5N1 subtype,"Narayanganj District (admin level 2), Dhaka Division (admin level 1); Rajshahi Division (admin level 1)",Bangladesh,Galliformes; Anas; Sus scrofa; Gallus gallus,2010_06_29_2; 2010_08_18_3; 2010_08_16_3 +180,flu_00181,2017-05-05 to 2017-05-05,H5N8 subtype,England (admin level 1),United Kingdom,Gallus gallus; Aves,2017_05_12_11 +181,flu_00182,2010-01-10 to 2010-02-03,H5N1 subtype,"Jambi Province (admin level 1); Cirebon (admin level 2), West Java Province (admin level 1); East Java (admin level 1); Lampung Province (admin level 1); Banten Province (admin level 1); Tebo (admin level 2), Jambi Province (admin level 1); Central Java Province (admin level 1); Kepulauan Riau (admin level 1); Pekanbaru (admin level 2), Riau Province (admin level 1)",Indonesia,Galliformes; Homo sapiens; Gallus gallus; Aves,2010_01_27_4; 2010_02_03_2; 2010_02_03_6; 2010_01_20_5; 2010_02_19_4 +182,flu_00183,2008-12-12 to 2008-12-12,H5N1 subtype,"Kamrup district (admin level 2), Assam (admin level 1)",India,Galliformes; Aves,2008_12_12_3 +183,flu_00184,2011-04-01 to 2011-06-11,H5N1 subtype,"Bali (admin level 1); Banda Aceh (admin level 2), Aceh (admin level 1); Kobarid Municipality (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Tabanan Regency (admin level 2), Bali (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Yogyakarta (admin level 1)",Indonesia,Homo sapiens; Anas; Galliformes; Gallus gallus; Aves,2011_04_28_8; 2011_05_18_5; 2011_06_20_1; 2011_04_05_1; 2011_04_12_5 +184,flu_00185,2011-06-22 to 2011-06-22,H5N1 subtype,North Rhine-Westphalia (admin level 1),Germany,Aves,2011_07_06_2 +185,flu_00186,2014-10-06 to 2014-10-06,H5N1 subtype,Altai Krai (admin level 1),Russia,Anas; Gallus gallus; Aves,2014_10_06_1 +186,flu_00187,2007-07-27 to 2007-07-27,H5N1 subtype,Manipur (admin level 1),India,Galliformes,2007_07_27_2 +187,flu_00188,2015-01-30 to 2015-06-12,H7N9 subtype,"Anhui (admin level 1); Hubei (admin level 1); Jiangxi (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Zhejiang (admin level 1); Shanghai (admin level 1); Heyuan (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Aves; Gallus gallus,2015_06_12_5; 2015_03_06_6; 2015_05_01_8; 2015_05_29_7; 2015_01_30_6 +188,flu_00189,2013-05-23 to 2013-05-23,H5N1 subtype,Lower Saxony (admin level 1),Germany,Galliformes; Homo sapiens; Aves,2013_05_23_5 +189,flu_00190,2007-11-14 to 2007-11-14,H5N1 subtype,Riyadh Region (admin level 1),Saudi Arabia,Galliformes; Gallus gallus; Aves,2007_11_23_2 +190,flu_00191,2008-07-25 to 2008-09-08,H5N1 subtype,"California (admin level 1); Idaho (admin level 1); La Crosse County (admin level 2), Wisconsin (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1)",United States of America,Galliformes; Homo sapiens; Aves; Gallus gallus,2008_09_08_2; 2008_09_08_4; 2008_07_25_5 +191,flu_00192,2007-09-04 to 2007-11-01,H5N1 subtype,"Hoang Mai (admin level 2), Hanoi (admin level 1); Tra Vinh (admin level 2), Trà Vinh (admin level 1); Cao Bang (admin level 1)",Vietnam,Galliformes; Anas; Gallus gallus,2007_09_04_3; 2007_11_01_3; 2007_10_29_4 +192,flu_00193,2007-11-29 to 2007-11-29,H5N1 subtype,"Suffolk County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves,2007_12_07_1 +193,flu_00194,2014-01-24 to 2014-02-01,H5N1 subtype,Siem Reap Province (admin level 1),Cambodia,Homo sapiens,2014_02_07_2 +194,flu_00195,2008-03-07 to 2008-03-07,H5N1 subtype,Basra Vilayet (admin level 1),Iraq,Galliformes,2008_03_07_3 +195,flu_00196,2009-03-17 to 2009-03-30,H5N1 subtype,Aichi Prefecture (admin level 1),Japan,Galliformes; Homo sapiens; Aves,2009_03_17_5; 2009_03_30_3 +196,flu_00197,2012-01-18 to 2012-01-18,H5N1 subtype,Banteay Meanchey Province (admin level 1),Cambodia,Galliformes; Homo sapiens; Gallus gallus,2012_02_02_14 +197,flu_00198,2009-01-11 to 2009-01-11,H5N1 subtype,East Germany (country),East Germany,Anas; Anser; Columbidae; Passeridae,2009_03_17_1 +198,flu_00199,2006-12-15 to 2006-12-15,H5N1 subtype,Little India (admin level 2),Singapore,Passeridae; Anser; Columbidae; Aves,2006_12_15_1 +199,flu_00200,2016-10-22 to 2016-11-4,H5N8 subtype,"Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Delhi (admin level 1); Madhya Pradesh (admin level 1); Alappuzha (admin level 2), Kerala (admin level 1); Punjab (admin level 1)",India,Galliformes; Anas; Ciconiidae; Gallus gallus; Aves,2016_11_15_12; 2016_11_07_3 +200,flu_00201,2015-03-31 to 2015-03-31,H5N1 subtype,"Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Homo sapiens,2015_04_03_9 +201,flu_00202,2010-06-28 to 2010-07-18,H5N1 subtype,"Gia Lai (admin level 1); Thai Nguyen (admin level 2), Thái Nguyên (admin level 1)",Vietnam,Galliformes; Anas; Aves,2010_07_02_3; 2010_08_20_2 +202,flu_00203,2009-01-09 to 2009-02-03,H5N1 subtype,Suez Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Anas; Anser; Homo sapiens; Aves; Gallus gallus,2009_01_21_5; 2009_02_06_9; 2009_02_13_4 +203,flu_00204,2009-10-07 to 2009-11-16,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Nan (admin level 1)",Thailand,Galliformes; Anas; Aves,2009_11_20_6 +204,flu_00205,2011-12-13 to 2011-12-16,H5N1 subtype,"Katchiungo (admin level 2), Huambo Province (admin level 1); Hong Kong (admin level 1)",Angola,Chroicocephalus ridibundus; Aves,2011_12_22_1 +205,flu_00206,2007-04-06 to 2007-04-06,H5N1 subtype,Kampong Cham Province (admin level 1),Cambodia,Anas; Homo sapiens; Aves; Gallus gallus,2007_04_23_2 +206,flu_00207,2008-01-28 to 2008-03-14,H5N1 subtype,"Guizhou (admin level 1); Cheung Prey District (admin level 2), Kampong Cham Province (admin level 1); Hong Kong (admin level 1); Guangdong (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Anas; Gallus gallus; Aves,2008_02_20_1; 2008_02_08_1; 2008_03_14_1; 2008_03_27_3; 2008_03_03_3 +207,flu_00208,2016-11-21 to 2016-11-23,H5N1 subtype,Bauchi State (admin level 1); Kano State (admin level 1),Nigeria,Anas; Gallus gallus,2016_12_06_15 +208,flu_00209,2008-10-15 to 2008-10-15,H5N1 subtype,"Lower Saxony (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1)",Germany,Galliformes; Aves,2008_10_16_2 +209,flu_00210,2015-01-17 to 2015-03-02,H7N9 subtype,"Dongguan (admin level 2), Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Hong Kong (admin level 1); Jiangsu (admin level 1)",People's Republic of China,Galliformes; Homo sapiens; Gallus gallus,2015_03_02_11; 2015_02_13_5 +210,flu_00211,2014-01-31 to 2014-03-07,H7N9 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Gallus gallus,2014_01_31_3; 2014_03_07_7 +211,flu_00212,2014-12-20 to 2015-2-2,H5N8 subtype,"Kings County (admin level 2), New York (admin level 1); Oregon (admin level 1); Winston County (admin level 2), Mississippi (admin level 1); Washington (admin level 1); Deschutes County (admin level 2), Oregon (admin level 1); Baja California Sur (admin level 1)",United States of America,Galliformes; Anas; Gallus gallus; Aves,2015_02_23_6; 2015_02_23_7; 2015_01_16_1; 2014_12_23_3; 2015_02_06_9; 2014_12_29_4 +212,flu_00213,2008-03-07 to 2008-03-07,H5N1 subtype,Phatthalung (admin level 1),Thailand,Galliformes; Anas,2008_03_07_4 +213,flu_00214,2014-01-13 to 2014-03-07,H5N1 subtype,Bac Ninh (admin level 1); Dong Thap Province (admin level 1),Vietnam,Galliformes; Homo sapiens; Aves,2014_01_22_2; 2014_02_07_5; 2014_03_07_5; 2014_02_19_5 +214,flu_00215,2008-10-02 to 2008-11-14,H5N1 subtype,"Pho Prathap Chang (admin level 2), Phichit (admin level 1); Uthai Thani (admin level 1); Sukhothai (admin level 1); Sawankhalok (admin level 1); Amphoe Thung Saliam (admin level 2), Sukhothai (admin level 1)",Thailand,Homo sapiens; Anas; Gallus gallus; Aves,2008_11_07_4; 2008_10_02_3; 2008_11_14_2 +215,flu_00216,2014-01-16 to 2014-03-20,H5N8 subtype,"Busan (admin level 1); Gochang (admin level 2), North Jeolla Province (admin level 1); Gwacheon (admin level 2), Gyeonggi Province (admin level 1); North Jeolla Province (admin level 1); Seoul (admin level 1); Gyeonggi Province (admin level 1); South Chungcheong Province (admin level 1)",South Korea,Galliformes; Anser fabalis; Aves; Gallus gallus; Anas; Homo sapiens,2014_01_31_1; 2014_09_30_4; 2014_03_20_6; 2014_03_20_1; 2014_01_22_1 +216,flu_00217,2012-12-30 to 2012-12-30,H5N1 subtype,India (country),India,Galliformes; Aves,2012_02_02_3 +217,flu_00218,2012-11-15 to 2013-02-11,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Galliformes; Aves,2013_02_11_2; 2012_12_27_1; 2012_11_15_1 +218,flu_00219,2015-08-28 to 2015-11-20,H5N6 subtype,Vietnam (country),Vietnam,Homo sapiens; Aves; Gallus gallus,2015_11_20_5; 2015_10_05_6; 2015_10_14_4; 2015_08_28_5; 2015_09_04_4 +219,flu_00220,2017-01-10 to 2017-01-10,H5N8 subtype,Ireland (country),Ireland,Galliformes; Homo sapiens,2017_01_10_2 +220,flu_00221,2011-09-14 to 2011-09-26,H5N1 subtype,West Bengal (admin level 1); Jharkhand (admin level 1),India,Galliformes; Anas; Aves,2011_12_16_1; 2011_09_23_3 +221,flu_00222,2013-05-31 to 2013-05-31,Influenza A virus,County of Viborg and Nyslott (admin level 1),Swedish Empire,Galliformes; Anas; Ciconiidae; Aves,2013_06_07_2 +222,flu_00223,2016-10-21 to 2016-10-21,H5N1 subtype,"Delhi (admin level 1); South Delhi (admin level 2), Delhi (admin level 1); Gwalior (admin level 2), Madhya Pradesh (admin level 1)",India,Ciconiidae; Aves,2016_10_21_2 +223,flu_00224,2016-11-04 to 2016-12-12,H5N8 subtype,"Stansstad (admin level 2), Nidwalden (admin level 1); Belmont-sur-Lausanne (admin level 2), Lavaux-Oron District (admin level 1); Canton of Neuchâtel (admin level 1); Oberhofen bei Kreuzlingen (admin level 2), Thurgau (admin level 1)",Switzerland,Galliformes; Aves; Laridae; Anas platyrhynchos; Chroicocephalus ridibundus; Anas; Cepora,2016_12_13_10; 2016_11_18_6; 2016_11_15_8 +224,flu_00225,2009-10-21 to 2009-11-28,H5N1 subtype,"Dien Bien Phu (admin level 2), Điện Biên (admin level 1)",Vietnam,Galliformes; Homo sapiens,2009_11_06_2; 2009_12_14_2 +225,flu_00226,2014-07-25 to 2014-07-25,H5N8 subtype,"Hampyeong County (admin level 2), South Jeolla Province (admin level 1); Hampyeong (admin level 2), South Jeolla Province (admin level 1)",South Korea,Galliformes; Anas; Gallus gallus,2014_08_01_1 +226,flu_00227,2006-12-06 to 2006-12-20,H5N1 subtype,Bac Lieu (admin level 1); Ca Mau (admin level 1),Vietnam,Galliformes; Anas; Gallus gallus; Aves,2006_12_22_2; 2007_01_08_3 +227,flu_00228,2011-02-13 to 2011-05-16,H5N1 subtype,"Gyeonggi Province (admin level 1); Yeoncheon (admin level 2), Gyeonggi Province (admin level 1); Seosan (admin level 2), South Chungcheong Province (admin level 1); Seoul (admin level 1)",South Korea,Galliformes; Anas; Gallus gallus; Aves,2011_02_22_7; 2011_06_07_1; 2011_04_05_2 +228,flu_00229,2015-10-05 to 2015-10-05,H5N1 subtype,Lagos (admin level 1),Nigeria,Gallus gallus; Aves,2015_10_05_3 +229,flu_00230,2014-02-06 to 2014-02-19,H5N1 subtype,East Java (admin level 1),Indonesia,Galliformes; Anas; Gallus gallus; Aves,2014_02_19_3; 2014_02_19_4 +230,flu_00231,2007-03-23 to 2007-03-23,H5N1 subtype,Punjab (admin level 1),Pakistan,Corvus; Gallus gallus,2007_03_23_2 +231,flu_00232,2011-05-31 to 2011-07-11,H5N1 subtype,South Sulawesi (admin level 1); Jambi Province (admin level 1),Indonesia,Galliformes; Homo sapiens; Gallus gallus,2011_07_11_2; 2011_06_10_3; 2011_06_20_1; 2011_05_31_1 +232,flu_00233,2011-11-17 to 2011-11-17,H5N1 subtype,Battambang Province (admin level 1),Cambodia,Galliformes; Anas; Anser; Gallus gallus,2011_11_17_3 +233,flu_00234,2017-02-01 to 2017-02-01,H5N8 subtype,Germany (country),Germany,Anas platyrhynchos; Aves,2017_02_01_3 +234,flu_00235,2010-05-17 to 2010-05-28,H5N1 subtype,"Tulkarm Governorate (admin level 2), West Bank (admin level 1); West Bank (admin level 1)",Israel,Galliformes; Gallus gallus; Aves,2010_05_28_6; 2010_05_17_4 +235,flu_00236,2008-01-10 to 2008-01-10,H5N1 subtype,England (admin level 1),United Kingdom,Anas; Cygnus; Homo sapiens,2008_01_10_2 +236,flu_00237,2006-12-07 to 2007-03-08,H5N1 subtype,Heilongjiang (admin level 1); Hong Kong (admin level 1),People's Republic of China,Aves; Lonchura punctulata,2007_03_08_1; 2007_01_08_2; 2006_12_07_1 +237,flu_00238,2014-01-02 to 2014-02-18,H5N1 subtype,Hubei (admin level 1),People's Republic of China,Galliformes; Gallus gallus; Aves,2014_01_09_2; 2014_02_19_8; 2014_01_22_3 +238,flu_00239,2007-09-05 to 2007-09-05,H5N1 subtype,"Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1)",People's Republic of China,Galliformes; Anas; Aves,2007_09_21_2 +239,flu_00240,2013-05-30 to 2013-05-30,H7N1 subtype,Catalonia (admin level 1),Spain,Galliformes,2013_05_30_2 +240,flu_00241,2009-03-19 to 2009-05-01,H5N1 subtype,"Depok (admin level 2), West Java Province (admin level 1); Ngawi (admin level 2), East Java (admin level 1); Pekanbaru (admin level 2), Riau Province (admin level 1)",Indonesia,Homo sapiens; Gallus gallus; Aves; Lonchura punctulata,2009_05_05_1; 2009_04_08_5; 2009_03_30_5; 2009_05_01_3 +241,flu_00242,2016-07-19 to 2016-07-19,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Anser; Gallus gallus,2016_07_19_4 +242,flu_00243,2010-07-02 to 2010-10-01,H5N1 subtype,"Luwu Utara (admin level 2), South Sulawesi (admin level 1); Jakarta (admin level 1); Lampung Province (admin level 1); Banten Province (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Soppeng (admin level 2), South Sulawesi (admin level 1)",Indonesia,Galliformes; Homo sapiens; Gallus gallus; Aves,2010_08_20_1; 2010_08_06_1; 2010_10_08_1; 2010_10_01_1; 2010_08_06_2 +243,flu_00244,2016-12-26 to 2017-02-07,H5N1 subtype,Odisha (admin level 1); Andaman and Nicobar Islands (admin level 1),India,Galliformes; Anas; Gallus gallus; Aves,2017_01_10_11; 2017_01_13_4 +244,flu_00245,2010-03-01 to 2010-05-05,H5N1 subtype,"Khanh Hoa (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Bac Giang (admin level 1); Ca Mau (admin level 1)",Vietnam,Galliformes; Aves; Gallus gallus; Anas; Homo sapiens; Erithacus rubecula,2010_03_09_4; 2010_03_01_3; 2010_05_04_2; 2010_08_26_3; 2010_03_09_6 +245,flu_00246,2015-11-25 to 2016-01-22,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Anser; Gallus gallus; Aves,2015_11_25_5; 2016_01_15_5; 2016_01_22_8; 2015_12_18_5 +246,flu_00247,2009-12-3 to 2009-12-3,H1N1 subtype,Sicily (admin level 1),Italy,Sus scrofa,2010_01_20_7 +247,flu_00248,2014-06-17 to 2014-06-17,H7N9 subtype,Shandong (admin level 1); Jiangsu (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2014_06_17_2 +248,flu_00249,2011-09-30 to 2011-11-17,H5N1 subtype,Maine (admin level 1); Hong Kong (admin level 1),United States of America,Aves,2011_09_30_1; 2011_11_17_1 +249,flu_00250,2011-01-04 to 2011-01-04,H5N1 subtype,Kagoshima Prefecture (admin level 1),Japan,Aves,2011_01_14_1 +250,flu_00251,2014-03-20 to 2014-03-20,H5N1 subtype,People's Republic of China (country),People's Republic of China,Galliformes; Aves,2014_03_20_2 +251,flu_00252,2016-04-20 to 2016-06-20,H5N2 subtype,Taipei (admin level 1); Taichung (admin level 1),Taiwan,Galliformes; Gallus gallus,2016_05_20_6; 2016_04_20_3; 2016_06_24_5 +252,flu_00253,2014-01-16 to 2014-01-16,H5N8 subtype,South Gyeongsang Province (admin level 1),South Korea,Aves,2014_02_19_6 +253,flu_00254,2010-02-24 to 2010-04-01,H5N1 subtype,Gharbia Governorate (admin level 1); Qalyubia Governorate (admin level 1); Damietta Governorate (admin level 1),Egypt,Galliformes; Anas; Homo sapiens,2010_04_02_4; 2010_05_28_1; 2010_03_26_3; 2010_03_09_5 +254,flu_00255,2011-03-08 to 2011-03-14,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Homo sapiens,2011_03_22_5 +255,flu_00256,2008-04-08 to 2008-06-02,H5N1 subtype,"Ural Oblast (admin level 2), Russian Republic (admin level 1); Primorsky Krai (admin level 1); Perm Krai (admin level 1); Altai Krai (admin level 1)",Russia,Galliformes; Anas; Gallus gallus; Aves,2008_04_18_2; 2008_06_02_1 +256,flu_00257,2015-10-16 to 2015-11-25,H7N9 subtype,Zhejiang (admin level 1); Jiangsu (admin level 1); Guangdong (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2016_01_15_7; 2015_11_25_6; 2016_07_26_2; 2015_11_13_4; 2015_10_16_5 +257,flu_00258,2016-11-15 to 2016-12-20,H5N6 subtype,Akita Prefecture (admin level 1),Japan,Cygnus atratus; Homo sapiens; Aves,2016_12_20_3; 2016_12_01_3 +258,flu_00259,2017-04-08 to 2017-05-31,H7N9 subtype,Sichuan (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Aves; Gallus gallus,2017_06_06_2; 2017_05_30_3; 2017_05_30_10; 2017_05_12_13 +259,flu_00260,2014-11-25 to 2014-12-29,H5N1 subtype,Sohag Governorate (admin level 1); Minya Governorate (admin level 1),Egypt,Galliformes; Homo sapiens; Aves; Gallus gallus,2014_12_29_8; 2014_11_25_4; 2014_12_16_5 +260,flu_00261,2013-07-15 to 2013-07-15,H7N7 subtype,Saint George Parish (admin level 1),Dominica,Galliformes; Homo sapiens; Aves,2013_07_15_2 +261,flu_00262,2008-08-27 to 2008-09-18,H5N1 subtype,Luang Prabang Province (admin level 1),Laos,Galliformes; Anas; Homo sapiens; Aves,2008_09_18_2; 2008_09_11_2 +262,flu_00263,2017-01-26 to 2017-01-26,H5N5 subtype,Germany (country),Germany,Galliformes,2017_02_07_9 +263,flu_00264,2011-12-24 to 2011-12-24,H5N1 subtype,"distretto di Meherpur (admin level 2), Khulna Division (admin level 1)",Bangladesh,Gallus gallus; Aves,2012_01_06_3 +264,flu_00265,2014-10-01 to 2014-10-01,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Homo sapiens; Aves,2014_10_06_2 +265,flu_00266,2014-12-29 to 2014-12-29,H5N6 subtype,"Vinh Long City (admin level 2), Vĩnh Long (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Galliformes,2014_12_29_7 +266,flu_00267,2015-08-18 to 2015-10-05,H5N2 subtype,South Africa (country),South Africa,Aves,2015_08_18_4; 2015_10_05_4; 2015_09_30_3 +267,flu_00268,2008-03-03 to 2008-03-16,H5N1 subtype,"Ca Mau (admin level 1); Ninh Binh (admin level 2), Ninh Bình (admin level 1)",Vietnam,Galliformes; Anas; Paradoxurus hermaphroditus; Gallus gallus; Aves,2008_03_14_2; 2008_03_28_3 +268,flu_00269,2017-01-03 to 2017-02-07,H5N8 subtype,Wales (admin level 1),United Kingdom,Galliformes; Anas; Gallus gallus; Aves; Anas platyrhynchos,2017_01_10_20; 2017_02_07_14 +269,flu_00270,2010-07-27 to 2010-07-27,H5N1 subtype,Jakarta (admin level 1); South Sulawesi (admin level 1),Indonesia,Galliformes; Anas; Columbidae; Gallus gallus,2010_08_06_1 +270,flu_00271,2013-03-01 to 2013-03-18,H5N1 subtype,"Ganjam (admin level 2), Odisha (admin level 1); distretto di Madhepura (admin level 2), Bihar (admin level 1); Purnia (admin level 2), Bihar (admin level 1); Lakhimpurin piirikunta (admin level 2), Assam (admin level 1); Khordha (admin level 2), Odisha (admin level 1); Odisha (admin level 1)",India,Galliformes; Gallus gallus; Aves,2013_03_18_2; 2013_03_01_1 +271,flu_00272,2007-08-11 to 2007-08-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Galliformes; Gallus gallus; Aves,2007_08_17_2 +272,flu_00273,2010-07-21 to 2010-10-15,H5N1 subtype,Qalyubia Governorate (admin level 1); Dakahlia Governorate (admin level 1); Cairo Governorate (admin level 1); Beni Suef Governorate (admin level 1),Egypt,Galliformes; Homo sapiens; Aves,2010_08_18_2; 2010_08_26_4; 2010_08_20_3; 2010_10_15_2; 2010_08_16_2; 2010_07_30_3 +273,flu_00274,2015-03-02 to 2015-03-06,H5N8 subtype,"Canyon County (admin level 2), Idaho (admin level 1); California (admin level 1); Nevada (admin level 1); Washington (admin level 1); Grays Harbor County (admin level 2), Washington (admin level 1); Clark County (admin level 2), Kansas (admin level 1)",United States of America,Anas; Mareca americana; Aves,2015_03_06_1; 2015_03_02_3 +274,flu_00275,2015-01-23 to 2015-01-23,H5N3 subtype,Taiwan (country),Taiwan,Galliformes; Aves,2015_01_23_8 +275,flu_00276,2017-03-22 to 2017-03-22,H5N1 subtype,"Tây Ninh (admin level 2), Tay Ninh Province (admin level 1)",Vietnam,Galliformes; Aves,2017_03_22_13 +276,flu_00277,2009-01-14 to 2009-02-23,H5N1 subtype,"Kurigram (admin level 2), Rangpur Division (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1); Rajshahi Division (admin level 1); Chittagong District (admin level 2), Chattogram Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Galliformes; Homo sapiens; Anas; Gallus gallus; Aves,2009_02_13_2; 2009_02_06_2; 2009_02_23_4; 2009_01_14_2 +277,flu_00278,2016-05-06 to 2016-05-06,H5N8 subtype,Taiwan (country),Taiwan,Gallus gallus; Aves,2016_05_06_4 +278,flu_00279,2017-05-22 to 2017-05-22,H5N5 subtype,Netherlands (country),Netherlands,Anser; Homo sapiens; Aves,2017_06_06_1; 2017_05_30_1 +279,flu_00280,2009-02-06 to 2009-02-06,H5N2 subtype,British Columbia (admin level 1),Canada,Galliformes,2009_02_06_7 +280,flu_00281,2015-04-02 to 2015-04-02,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Galliformes; Homo sapiens; Aves,2015_04_03_7 +281,flu_00282,2017-11-22 to 2017-11-22,H7N9 subtype,Fujian (admin level 1); Zhejiang (admin level 1); Jiangsu (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2017_01_10_21 +282,flu_00283,2016-01-11 to 2016-01-11,H5N1 subtype,Scotland (admin level 1),United Kingdom,Galliformes; Gallus gallus; Aves,2016_01_15_4 +283,flu_00284,2015-05-22 to 2015-07-08,H5N1 subtype,Istanbul Province (admin level 1),Turkey,Galliformes; Metazoa; Aves,2015_07_08_1; 2015_05_22_4 +284,flu_00285,2016-11-24 to 2016-11-24,Influenza A virus,Tunisia (country),Tunisia,Aves,2016_12_13_11 +285,flu_00286,2015-04-03 to 2015-04-03,H5N6 subtype,Jiangsu (admin level 1),People's Republic of China,Anser; Aves,2015_04_03_5 +286,flu_00287,2016-05-10 to 2016-05-10,H5N1 subtype,"Kampot Province (admin level 1); distretto di Chhouk (admin level 2), Kampot Province (admin level 1)",Cambodia,Homo sapiens; Gallus gallus,2016_05_20_5 +287,flu_00288,2011-05-26 to 2011-05-26,H5N8 subtype,"Gochang (admin level 2), North Jeolla Province (admin level 1)",South Korea,Galliformes; Aves,2014_01_22_4 +288,flu_00289,2016-11-18 to 2017-01-10,H5N6 subtype,Hunan (admin level 1); Hong Kong (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Aves; Gallus gallus,2016_12_01_11; 2016_12_06_20; 2017_01_10_10 +289,flu_00290,2015-01-16 to 2015-01-16,H5N8 subtype,"Fujian Province, Republic of China (admin level 1)",Taiwan,Galliformes; Aves; Gallus gallus; Anas; Anser; Homo sapiens,2015_01_16_3 +290,flu_00291,2013-03-26 to 2013-04-18,H7N9 subtype,Fujian (admin level 1); Beijing (admin level 1); Zhejiang (admin level 1); Jiangsu (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Aves,2014_12_09_5; 2013_04_19_4 +291,flu_00292,2012-02-02 to 2012-03-23,H5N2 subtype,Taiwan (country),Taiwan,Anas; Gallus gallus; Aves,2012_04_09_3; 2012_03_12_4 +292,flu_00293,2015-01-30 to 2015-01-30,H5N1 subtype,"Kuban-Black Sea Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1)",Soviet Union,Pelecanus crispus; Aves,2015_01_30_1 +293,flu_00294,2016-04-13 to 2016-04-13,H5N9 subtype,Veliko Tarnovo Province (admin level 1),Bulgaria,Galliformes; Anas; Gallus gallus; Homo sapiens,2016_04_26_2 +294,flu_00295,2017-03-08 to 2017-03-22,H7N9 subtype,"Giles County (admin level 2), Virginia (admin level 1); Tennessee (admin level 1)",United States of America,Galliformes; Homo sapiens; Gallus gallus; Aves,2017_03_08_13; 2017_03_22_11; 2017_03_22_10 +295,flu_00296,2007-01-07 to 2007-02-07,H5N1 subtype,"West Java Province (admin level 1); Tangerang (admin level 2), Banten Province (admin level 1); Bali (admin level 1)",Indonesia,Anas; Sus scrofa; Homo sapiens; Gallus gallus,2007_01_18_3; 2007_02_07_5 +296,flu_00297,2014-01-22 to 2014-01-22,Influenza A virus,Can Tho (admin level 1),Vietnam,Galliformes; Homo sapiens,2014_01_22_5 +297,flu_00298,2015-04-01 to 2015-04-01,H5N1 subtype,"Kadiogo (admin level 2), Centre Region, Burkina Faso (admin level 1); Sanguié (admin level 2), Centre-Ouest Region (admin level 1)",Burkina Faso,Galliformes,2015_04_03_4 +298,flu_00299,2017-03-08 to 2017-03-08,H5N2 subtype,United States of America (country),United States of America,Aves,2017_03_08_14 +299,flu_00300,2016-01-08 to 2016-01-08,H5N1 subtype,France (country),France,Galliformes; Aves,2016_01_08_2 +300,flu_00301,2007-09-27 to 2007-09-27,H7N3 subtype,Saskatchewan (admin level 1),Canada,Galliformes; Homo sapiens; Gallus gallus,2007_10_05_2; 2007_09_28_2 +301,flu_00302,2015-11-13 to 2015-11-13,H5N2 subtype,Emilia-Romagna (admin level 1),Italy,Anas; Aves,2015_11_13_1 +302,flu_00303,2008-02-01 to 2008-03-14,H5N1 subtype,"Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Malda (admin level 2), West Bengal (admin level 1); West Bengal (admin level 1)",India,Galliformes; Anas; Gallus gallus; Aves,2008_03_14_4; 2008_02_01_3 +303,flu_00304,2015-03-20 to 2015-03-20,H5N8 subtype,Sweden (country),Sweden,Galliformes,2015_03_20_2 +304,flu_00305,2007-12-19 to 2007-12-19,H5N1 subtype,"Hamirpur district (admin level 2), Uttar Pradesh (admin level 1); Dhaka Division (admin level 1)",India,Galliformes; Gallus gallus,2008_01_04_3 +305,flu_00306,2017-03-22 to 2017-03-22,H5N6 subtype,Vietnam (country),Vietnam,Gallus gallus,2017_03_22_14 +306,flu_00307,2009-12-11 to 2009-12-11,H9N2 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2010_01_12_7 +307,flu_00308,2017-01-05 to 2017-01-18,Influenza A virus,Chile (country),Chile,Phasianidae; Aves,2017_01_10_9; 2017_01_23_7 +308,flu_00309,2015-03-02 to 2015-03-02,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus,2015_03_02_5 +309,flu_00310,2016-03-21 to 2016-03-21,H5N1 subtype,Burkina Faso (country),Burkina Faso,Aves,2016_03_21_4 +310,flu_00311,2008-07-25 to 2008-07-25,H5N1 subtype,"Crimean Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1); Azov-Black Sea Krai (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1); Republic of Crimea (admin level 1)",Ukraine,Aves,2008_07_25_2 +311,flu_00312,2013-02-01 to 2013-02-13,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Chroicocephalus ridibundus; Homo sapiens; Aves; Gallus gallus,2013_02_01_1; 2013_03_01_4 +312,flu_00313,2017-02-27 to 2017-03-22,H7N9 subtype,Hubei (admin level 1); Jiangxi (admin level 1); Guizhou (admin level 1); Sichuan (admin level 1); Henan (admin level 1); Jiangsu (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2017_03_22_15 +313,flu_00314,2008-12-26 to 2008-12-26,H5N1 subtype,Jiangsu Province (Republic of China) (admin level 1),Republic of China (1912–1949),Galliformes; Gallus gallus; Aves,2009_01_14_4 +314,flu_00315,2015-03-25 to 2015-03-30,H5N1 subtype,Tulcea County (admin level 1),Romania,Pelecanidae; Aves,2015_04_03_1 +315,flu_00316,2016-04-20 to 2016-04-20,H7N3 subtype,Jalisco (admin level 1); Veracruz (admin level 1); Puebla (admin level 1),Mexico,Gallus gallus; Pavo cristatus,2016_04_20_1 +316,flu_00317,2009-05-01 to 2009-06-12,H5N1 subtype,"Balrampur district (admin level 2), Uttar Pradesh (admin level 1); Darjeeling (admin level 2), West Bengal (admin level 1); Districte de North Dinajpur (admin level 2), West Bengal (admin level 1)",India,Galliformes; Anas; Gallus gallus; Aves,2009_06_12_2; 2009_05_01_2; 2009_05_01_1 +317,flu_00318,2012-03-19 to 2012-03-25,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Galliformes; Phasianidae; Homo sapiens,2012_04_12_5 +318,flu_00319,2011-10-18 to 2011-10-18,H5N1 subtype,Mazandaran Province (admin level 1),Iran,Galliformes; Aves,2011_10_18_2 +319,flu_00320,2015-11-13 to 2015-11-13,Influenza A virus,Eastern Cape (admin level 1),South Africa,Aves,2015_11_13_2 +320,flu_00321,2015-12-18 to 2016-02-08,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Galliformes; Anas; Gallus gallus; Aves,2016_02_08_6; 2015_12_18_4; 2016_01_08_5 +321,flu_00322,2010-03-08 to 2010-03-08,H5N1 subtype,"Onderbanken (admin level 2), Limburg (admin level 1)",Netherlands,Galliformes; Homo sapiens; Aves; Gallus gallus,2010_03_26_2 +322,flu_00323,2017-01-23 to 2017-03-08,Influenza A virus,"Masaka (admin level 2), Central Region (admin level 1); Budaka (admin level 2), Eastern Region (admin level 1)",Uganda,Anas; Gallus gallus; Aves,2017_03_08_4; 2017_01_23_5 +323,flu_00324,2006-12-10 to 2006-12-10,H5N1 subtype,Anhui Province (admin level 1),China,Galliformes; Homo sapiens; Gallus gallus,2007_01_18_4 +324,flu_00325,2007-04-16 to 2007-04-16,H5N1 subtype,Japan (country),Japan,Aves,2007_04_16_1 +325,flu_00326,2013-04-19 to 2013-04-19,H5N1 subtype,"England (admin level 1); Suffolk County (admin level 2), Massachusetts (admin level 1)",United States of America,Galliformes; Aves,2013_04_19_2 +326,flu_00327,2013-04-19 to 2013-04-26,H5N1 subtype,Cairo Governorate (admin level 1),Egypt,Galliformes; Anas; Homo sapiens; Gallus gallus,2014_02_19_9; 2013_04_19_3 +327,flu_00328,2009-03-02 to 2009-03-02,H5N1 subtype,Phongsaly Province (admin level 1),Laos,Galliformes; Homo sapiens,2009_03_02_6 +328,flu_00329,2017-02-28 to 2017-02-28,H5N8 subtype,United States of America (country),United States of America,Anas; Phasianidae,2017_03_08_5 +329,flu_00330,2016-04-06 to 2016-05-10,H7N9 subtype,"Hong Kong (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Homo sapiens; Aves,2016_04_26_11; 2016_04_26_10; 2016_05_27_2 +330,flu_00331,2011-03-29 to 2011-03-29,H5N1 subtype,Tasmania (admin level 1),Australia,Galliformes; Anas; Gallus gallus,2011_03_29_2 +331,flu_00332,2012-03-09 to 2012-04-16,H5N1 subtype,"West Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Bali (admin level 1); Kota Denpasar (admin level 2), Bali (admin level 1)",Indonesia,Galliformes; Homo sapiens; Aves,2012_04_12_6; 2012_04_09_4; 2012_04_16_1 diff --git a/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-19.csv b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-19.csv new file mode 100644 index 0000000..023ce8c --- /dev/null +++ b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-19.csv @@ -0,0 +1,334 @@ +,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports +0,flu_00001,2011-12-06 to 2012-03-21,H5N1 subtype,"distretto di Siwan (admin level 2), Bihar (admin level 1); Mayurbhanj district (admin level 2), Odisha (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Jharkhand (admin level 1); Kolkata destrict (admin level 2), West Bengal (admin level 1); Lalitpur district (admin level 2), Uttar Pradesh (admin level 1); Khurdan piirikunta (admin level 2), Odisha (admin level 1); Visakhapatnam district (admin level 2), Andhra Pradesh (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Khordha district (admin level 2), Odisha (admin level 1); Orissa (admin level 1); Tripura (admin level 1); Punjab (admin level 1)",India,Galliformes; Corvus; Aves; Anas; Corvus macrorhynchos; Gallus gallus,2012_02_02_10; 2012_02_22_1; 2011_12_06_1; 2012_02_02_3; 2012_02_02_1; 2012_02_22_3; 2012_03_23_2; 2012_03_23_7; 2012_04_09_2; 2012_02_02_13; 2012_02_02_4 +1,flu_00002,2007-06-21 to 2007-07-17,H5N1 subtype,South Bohemia Region (admin level 1); Central Bohemian Region (admin level 1); South Moravian Region (admin level 1),Czech Republic,Phasianidae; Aves; Galliformes,2007_07_17_2; 2007_07_03_2; 2007_06_22_4 +2,flu_00003,2008-08-01 to 2008-08-15,H5N1 subtype,"Kebbi State (admin level 1); Juneau, Alaska (admin level 2), Alaska (admin level 1); Mayo-Kebbi Ouest Region (admin level 1); Kano State (admin level 1); Katsina State (admin level 1); Gombe State (admin level 1)",Nigeria,Aves; Anas platyrhynchos; Gallus gallus; Galliformes,2008_08_15_2; 2008_08_01_4 +3,flu_00004,2014-11-18 to 2015-01-23,H5N8 subtype,Kumamoto Prefecture (admin level 1); Miyazaki Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2015_01_23_4; 2014_12_09_1; 2014_12_19_4; 2014_11_18_1; 2014_12_29_5 +4,flu_00005,2016-11-18 to 2017-05-31,H7N9 subtype,"Tibet (admin level 1); Wuhan (admin level 2), Hubei (admin level 1); Jiangsu (admin level 1); Henan (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Huzhou (admin level 2), Zhejiang (admin level 1); Zhejiang (admin level 1); Suzhou (admin level 2), Anhui (admin level 1); Guangdong (admin level 1); Fuzhou (admin level 2), Fujian (admin level 1); Fujian (admin level 1); Suzhou (admin level 2), Jiangsu (admin level 1); Nantong (admin level 2), Jiangsu (admin level 1); Hengyang (admin level 2), Hunan (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Hubei (admin level 1); Rizhao (admin level 2), Shandong (admin level 1); Anhui (admin level 1); Sichuan (admin level 1); Hong Kong (admin level 1); Guizhou (admin level 1); Jiangxi (admin level 1)",People's Republic of China,Aves; Gallus gallus; Homo sapiens; Galliformes,2016_12_29_13; 2016_12_29_14; 2017_05_30_3; 2016_11_18_9; 2017_03_22_15; 2017_01_23_10; 2017_01_10_22; 2017_05_30_10; 2017_05_12_13; 2017_06_06_2; 2017_02_07_17; 2017_03_03_2; 2017_01_13_8; 2017_03_03_10; 2017_01_13_7; 2017_01_23_9; 2017_01_10_21; 2016_12_20_17 +5,flu_00006,2011-04-05 to 2011-09-15,H5N1 subtype,"Ha Nam (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1); Bac Kan (admin level 1); Gia Nghia (admin level 2), Đắk Nông (admin level 1); Tan Binh (admin level 2), Ho Chi Minh City (admin level 1); Distretto di Tu Son (admin level 2), Bac Ninh (admin level 1); Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Distretto di Binh Minh (admin level 2), Vĩnh Long Province (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Galliformes,2011_04_05_3; 2011_06_10_1; 2011_09_15_3; 2011_04_28_5; 2011_05_25_2; 2011_08_02_2 +6,flu_00007,2007-09-21 to 2008-03-14,H5N1 subtype,"Guizhou (admin level 1); Turpan (admin level 2), Xinjiang (admin level 1); Hong Kong (admin level 1); Guangdong (admin level 1); Cheung Prey District (admin level 2), Kampong Cham Province (admin level 1)",People's Republic of China,Homo sapiens; Galliformes; Aves; Anas; Egretta garzetta; Gallus gallus,2007_11_30_1; 2008_01_10_4; 2008_03_14_1; 2007_09_21_2; 2008_03_27_3; 2008_02_20_1; 2008_03_03_3; 2008_02_08_1; 2008_03_07_1; 2007_12_18_1 +7,flu_00008,2007-03-20 to 2007-03-23,H5N1 subtype,Kunar (admin level 1); Nangarhar (admin level 1); Kabul Province (admin level 1),Afghanistan,Aves; Galliformes,2007_04_02_2; 2007_03_20_3 +8,flu_00009,2016-08-19 to 2016-08-25,H9N2 subtype,Yunnan (admin level 1); Jiangxi (admin level 1),People's Republic of China,Homo sapiens,2016_09_09_5 +9,flu_00010,2011-11-10 to 2012-01-03,H5N1 subtype,Dakahlia Governorate (admin level 1); Gharbia Governorate (admin level 1),Egypt,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2011_12_06_6; 2012_02_02_5 +10,flu_00011,2008-12-25 to 2009-05-10,H5N1 subtype,"Thanh Hoa (admin level 2), Thanh Hóa (admin level 1); Dong Thap Province (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Bac Ninh (admin level 1); Ca Mau (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2009_03_30_6; 2009_05_05_3; 2009_02_06_5; 2009_05_15_2; 2009_01_14_10; 2009_05_01_5; 2009_02_13_6; 2009_02_06_10 +11,flu_00012,2009-08-28 to 2009-09-25,H5N1 subtype,Alexandria Governorate (admin level 1); Damietta Governorate (admin level 1),Egypt,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2009_09_25_3; 2009_09_08_3 +12,flu_00013,2008-12-12 to 2009-05-05,H5N1 subtype,"Qinghai (admin level 1); Hunan (admin level 1); Yulin (admin level 2), Shaanxi (admin level 1); Beijing (admin level 1); Huaihua (admin level 2), Hunan (admin level 1); Guizhou (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Lhasa (admin level 2), Tibet (admin level 1); Saint Thomas Lowland Parish (admin level 1); Xinjiang (admin level 1)",People's Republic of China,Anser; Homo sapiens; Galliformes; Passeridae; Aves; Anas; Gallus gallus,2009_02_13_3; 2008_12_12_2; 2009_03_10_1; 2009_01_30_5; 2009_01_14_9; 2009_01_14_8; 2009_02_06_3; 2009_03_17_4; 2009_05_11_2; 2009_03_02_1; 2009_01_14_1; 2009_02_23_2; 2009_05_22_1; 2009_01_21_4; 2009_02_06_8; 2009_04_28_2 +13,flu_00014,2008-10-09 to 2008-10-09,H5N1 subtype,"Seoul (admin level 1); Yesan (admin level 2), South Chungcheong Province (admin level 1)",South Korea,Aves; Anas; Galliformes,2008_10_09_2 +14,flu_00015,2012-01-12 to 2012-07-24,H5N1 subtype,"Guangzhou (admin level 2), Guangdong (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Ningxia Hui Autonomous Region (admin level 1); Hong Kong (admin level 1)",People's Republic of China,Homo sapiens; Corvus splendens; Copsychus saularis; Falco peregrinus calidus; Galliformes; Erithacus rubecula; Aves; Anas platyrhynchos; Lonchura punctulata; Gallus gallus,2012_04_09_1; 2012_09_07_1; 2012_06_11_6; 2012_04_25_2; 2012_03_23_1; 2012_06_28_1; 2012_04_12_1; 2012_07_24_1; 2012_02_02_9 +15,flu_00016,2009-11-09 to 2010-10-15,H5N1 subtype,"Pekanbaru (admin level 2), Riau Province (admin level 1); Palopo (admin level 2), South Sulawesi (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Lampung Province (admin level 1); Jambi Province (admin level 1); South Sulawesi (admin level 1); Riau Islands Province (admin level 1); Bulukumba (admin level 2), South Sulawesi (admin level 1); Cirebon (admin level 2), West Java Province (admin level 1); Luwu Timur (admin level 2), South Sulawesi (admin level 1); Barru (admin level 2), South Sulawesi (admin level 1); Tebo (admin level 2), Jambi Province (admin level 1); Bengkulu Province (admin level 1); Luwu Utara (admin level 2), South Sulawesi (admin level 1); Kepulauan Riau (admin level 1); East Java (admin level 1); Jakarta (admin level 1); Central Java Province (admin level 1); Banten Province (admin level 1); Kecamatan Karangasem (admin level 2), Bali (admin level 1)",Indonesia,Homo sapiens; Galliformes; Aves; Anas; Columbidae; Gallus gallus,2010_01_27_4; 2010_02_03_2; 2010_08_06_1; 2010_02_19_4; 2010_03_19_1; 2010_08_26_2; 2010_01_20_5; 2010_03_01_5; 2010_04_26_3; 2010_10_15_3; 2010_07_23_1; 2010_02_03_6; 2010_08_20_4; 2009_11_20_2; 2010_01_12_8; 2010_10_08_3; 2010_09_24_1; 2010_08_20_1; 2010_07_23_2; 2010_08_06_2; 2010_05_04_3; 2010_03_26_4 +16,flu_00017,2009-10-26 to 2009-10-26,H5N1 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2009_11_06_3 +17,flu_00018,2015-06-26 to 2015-07-24,H5N1 subtype,"Qiannanin buyien ja miaojen autonominen prefektuuri (admin level 2), Guizhou (admin level 1); Inner Mongolia (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1); Tibet Autonomous Region (admin level 1)",People's Republic of China,Anser; Podicipedidae; Cepora; Aves; Anas; Chroicocephalus ridibundus; Gallus gallus,2015_06_26_1; 2015_07_24_1 +18,flu_00019,2007-12-19 to 2008-05-23,H5N1 subtype,"Hamirpur district (admin level 2), Uttar Pradesh (admin level 1); Malda (admin level 2), West Bengal (admin level 1); Sipahijala district (admin level 2), Tripura (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Dhaka Division (admin level 1); West Bengal (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Tripura (admin level 1)",India,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2008_01_04_3; 2008_03_27_4; 2008_03_28_2; 2008_03_14_4; 2008_02_08_5; 2008_04_15_2; 2008_05_02_2; 2008_05_16_2; 2008_05_23_2; 2008_03_03_4; 2008_02_01_3; 2008_04_30_2 +19,flu_00020,2016-03-21 to 2016-04-11,H5N1 subtype,South Sulawesi (admin level 1),Indonesia,Aves; Gallus gallus; Anas,2016_03_21_3; 2016_04_11_2 +20,flu_00021,2016-01-02 to 2016-06-10,H5N1 subtype,Benue-Plateau State (admin level 1); Plateau State (admin level 1); Kaduna State (admin level 1),Nigeria,Aves,2016_06_10_3; 2016_01_15_3; 2016_01_29_3; 2016_01_08_3; 2016_03_14_5; 2016_02_22_4; 2016_04_11_3 +21,flu_00022,2010-09-21 to 2011-05-31,H5N1 subtype,"Soppeng (admin level 2), South Sulawesi (admin level 1); Bangka Tengah (admin level 2), Bangka Belitung Islands (admin level 1); South Tangerang (admin level 2), Banten Province (admin level 1); Samarinda (admin level 2), East Kalimantan (admin level 1); North Sulawesi Province (admin level 1); Luwu Utara (admin level 2), South Sulawesi (admin level 1); Bali (admin level 1); North Padang Lawas Regency (admin level 2), North Sumatra Province (admin level 1); Kalimantan Selatan (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Kotamobagu (admin level 2), North Sulawesi Province (admin level 1); Bolaang Mongondow Utara (admin level 2), North Sulawesi Province (admin level 1); Gunungkidul (admin level 2), Special Region of Yogyakarta (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Padangsidimpuan (admin level 2), North Sumatra Province (admin level 1); Surabaya (admin level 2), East Java (admin level 1); Gorontalo Province (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Lampung Province (admin level 1); Bengkulu Province (admin level 1); Desa Bangli (admin level 2), Bali (admin level 1); kabupaten de Bandung occidental (admin level 2), West Java Province (admin level 1); West Sumatra (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Kobarid Municipality (admin level 1); Jambi Province (admin level 1); Riau Islands Province (admin level 1); West Java Province (admin level 1); Tabanan Regency (admin level 2), Bali (admin level 1); East Java (admin level 1)",Indonesia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2010_12_09_6; 2011_05_31_1; 2011_01_28_7; 2011_02_11_9; 2011_04_05_1; 2011_01_28_4; 2011_02_28_3; 2011_04_12_2; 2011_04_28_2; 2010_10_01_1; 2011_01_24_3; 2011_02_22_5; 2011_05_18_5; 2011_01_14_4; 2010_10_27_1; 2010_12_03_7; 2011_03_22_6; 2010_12_17_2; 2010_10_08_1; 2011_03_29_7; 2011_03_29_4 +22,flu_00023,2015-01-23 to 2015-07-31,H5N2 subtype,"Calhoun County (admin level 2), Iowa (admin level 1); Clallam County (admin level 2), Washington (admin level 1); Moody County (admin level 2), South Dakota (admin level 1); Renville County (admin level 2), Minnesota (admin level 1); comté de Elizabeth City (admin level 2), Virginia (admin level 1); Montana (admin level 1); Massac County (admin level 2), Illinois (admin level 1); Montana Province (admin level 1); Missouri (admin level 1); Sioux County, Iowa (admin level 2), Iowa (admin level 1); Cherokee County (admin level 2), Texas (admin level 1); Sioux County (kondado sa Estados Unidos, North Dakota) (admin level 2), North Dakota (admin level 1); Alaska (admin level 1); Barron County (admin level 2), Wisconsin (admin level 1); Brown County (kondado sa Estados Unidos, Minnesota) (admin level 2), Minnesota (admin level 1); Wright County (admin level 2), Minnesota (admin level 1); Kandiyohi County (admin level 2), Minnesota (admin level 1); Leavenworth County (admin level 2), Kansas (admin level 1); Adair County (admin level 2), Oklahoma (admin level 1); Stearns County (admin level 2), Minnesota (admin level 1); Juneau County (admin level 2), Wisconsin (admin level 1); Blue Earth County (admin level 2), Minnesota (admin level 1); Dixon County (admin level 2), Nebraska (admin level 1); Buena Vista County (admin level 2), Iowa (admin level 1); Morrow megye (admin level 2), Oregon (admin level 1); Jasper County (admin level 2), Texas (admin level 1); Michigan (admin level 1); Arizona (admin level 1); Nobles County (admin level 2), Minnesota (admin level 1); Jefferson County, Iowa (admin level 2), Iowa (admin level 1); Lewis County (admin level 2), Washington (admin level 1); New Mexico (admin level 1); McCracken County (admin level 2), Kentucky (admin level 1); Oxford County (admin level 2), Maine (admin level 1); Hamilton County (admin level 2), Iowa (admin level 1); Hamilton County, Iowa (admin level 2), Iowa (admin level 1); Meeker County (admin level 2), Minnesota (admin level 1); South Dakota (admin level 1); Iowa (admin level 1); Renville County (admin level 2), North Dakota (admin level 1); McPherson County, Nebraska (admin level 2), Nebraska (admin level 1); Wisconsin (admin level 1); Beadle County (admin level 2), South Dakota (admin level 1); Macomb County (admin level 2), Michigan (admin level 1); Pipestone County (admin level 2), Minnesota (admin level 1); Oconto County (admin level 2), Wisconsin (admin level 1); Minnesota (admin level 1); Osceola County (admin level 2), Iowa (admin level 1); Sac County (admin level 2), Iowa (admin level 1); Dickey County (admin level 2), North Dakota (admin level 1); United States Virgin Islands (admin level 1); Roseau County (admin level 2), Minnesota (admin level 1)",United States of America,Branta canadensis; Anser; Homo sapiens; Anatidae; Galliformes; Phasianidae; Aves; Anas; Gallus gallus,2015_04_17_9; 2015_05_22_5; 2015_04_03_2; 2015_04_03_8; 2015_05_01_7; 2015_01_23_10; 2015_05_11_2; 2015_07_08_2; 2015_03_13_1; 2015_05_01_2; 2015_03_20_6; 2015_05_01_6; 2015_05_01_1; 2015_03_27_3; 2015_06_19_4; 2015_07_08_5; 2015_02_23_3; 2015_05_01_4; 2015_04_17_12; 2015_04_17_11; 2015_04_17_7; 2015_05_29_5; 2015_06_12_2; 2015_04_24_10; 2015_03_20_1; 2016_09_01_1; 2015_03_02_2; 2015_06_26_4; 2015_06_12_4; 2015_04_17_8; 2015_05_15_4; 2015_04_24_9; 2015_05_11_4; 2015_06_05_5; 2015_04_17_10; 2016_02_22_2; 2015_04_24_8; 2015_05_01_5 +23,flu_00024,2011-02-11 to 2011-04-01,H5N1 subtype,"Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); Yogyakarta (admin level 1); Padang Lawas Utara (admin level 2), North Sumatra Province (admin level 1); Kabupaten Karawang (admin level 2), West Java Province (admin level 1)",Indonesia,Aves; Gallus gallus; Anas; Homo sapiens,2011_03_15_10; 2011_03_07_4; 2011_04_12_5 +24,flu_00025,2016-11-28 to 2017-1-24,H5N8 subtype,Aomori Prefecture (admin level 1); Niigata Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas; Homo sapiens,2016_12_06_13; 2017_02_01_10; 2016_12_13_16 +25,flu_00026,2009-10-21 to 2010-01-20,H5N1 subtype,"Kon Tum (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Cao Bang (admin level 1); Ca Mau (admin level 1); Ha Tinh (admin level 1); Khanh Hoa (admin level 1)",Vietnam,Aves; Homo sapiens; Galliformes,2010_02_19_2; 2009_11_06_2; 2009_12_14_2; 2010_01_12_5 +26,flu_00027,2015-01-23 to 2015-03-27,H5N1 subtype,"Kunming (admin level 2), Yunnan (admin level 1); Sanmenxia (admin level 2), Henan (admin level 1); Jiangsu (admin level 1); Henan (admin level 1)",People's Republic of China,Aves; Anas; Homo sapiens,2015_03_27_6; 2015_01_23_1; 2015_01_30_7 +27,flu_00028,2010-01-17 to 2010-05-05,H5N1 subtype,"Bac Giang (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Bac Kan (admin level 1); Thanh Hóa (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Khanh Hoa (admin level 1); Ca Mau (admin level 1); Ha Tinh (admin level 1)",Vietnam,Erithacus rubecula; Homo sapiens; Galliformes; Aves; Anas; Gallus gallus,2010_08_26_3; 2010_05_04_2; 2010_04_19_3; 2010_03_09_4; 2010_03_09_6; 2010_03_01_6; 2010_04_12_3; 2010_01_27_5; 2010_03_01_3 +28,flu_00029,2012-03-30 to 2012-05-27,H5N1 subtype,Kampong Chhnang Province (admin level 1); Kampong Speu Province (admin level 1); Phnom Penh (admin level 2),Cambodia,Homo sapiens; Galliformes; Sus scrofa; Aves; Gallus gallus; Metazoa,2012_06_11_3; 2012_04_12_4; 2012_06_11_7 +29,flu_00030,2009-01-14 to 2009-04-20,H5N1 subtype,"Rajshahi Division (admin level 1); Chittagong District (admin level 2), Chattogram Division (admin level 1); Gaibandha (admin level 2), Rangpur Division (admin level 1); Comilla District (admin level 2), Chattogram Division (admin level 1); Dhaka Division (admin level 1); Netrakona (admin level 2), Mymensingh Division (admin level 1); Bileh Savar County (admin level 2), Ardabil Province (admin level 1); Kurigram (admin level 2), Rangpur Division (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2009_02_06_2; 2009_03_10_2; 2009_03_17_3; 2009_04_28_1; 2009_02_13_2; 2009_01_14_2; 2009_02_23_4; 2009_04_20_2 +30,flu_00031,2012-09-12 to 2012-09-20,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves; Homo sapiens; Galliformes,2012_09_20_3; 2012_09_14_1 +31,flu_00032,2009-03-02 to 2009-09-08,H5N1 subtype,"Merangin Regency (admin level 2), Jambi Province (admin level 1); Jambi Province (admin level 1); Ngawi (admin level 2), East Java (admin level 1); Banyuwangi (admin level 2), East Java (admin level 1); West Java Province (admin level 1); Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); Bali (admin level 1); South Sulawesi (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Galliformes,2009_06_29_2; 2009_03_02_5; 2009_07_21_2; 2009_07_10_2; 2009_05_01_3; 2009_08_07_3; 2009_09_08_2 +32,flu_00033,2012-08-10 to 2012-09-25,H5N1 subtype,Central Java Province (admin level 1); Special Region of Yogyakarta (admin level 1),Indonesia,Aves; Anas; Homo sapiens; Galliformes,2012_08_20_3; 2012_12_27_2 +33,flu_00034,2013-10-28 to 2014-06-09,H7N9 subtype,"Yangjiang (admin level 2), Guangdong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Zhejiang (admin level 1); Guangdong (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2014_01_22_6; 2014_01_31_6; 2014_01_31_3; 2014_01_31_2; 2014_04_10_4; 2014_04_10_9; 2013_12_06_3; 2016_10_03_6; 2014_06_23_3; 2014_03_07_7; 2014_03_07_6; 2013_10_28_4; 2014_02_19_12; 2014_03_07_2; 2014_02_07_3; 2013_12_13_2; 2014_01_09_10; 2014_02_19_1; 2014_03_07_13; 2013_11_08_4; 2014_01_09_7 +34,flu_00035,2014-01-31 to 2014-02-07,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1); Jiangxi (admin level 1)",People's Republic of China,Aves; Homo sapiens; Galliformes,2014_02_07_4; 2014_01_31_5 +35,flu_00036,2010-04-17 to 2010-04-22,H5N1 subtype,Prey Veng Province (admin level 1),Cambodia,Gallus gallus; Anas; Homo sapiens; Galliformes,2010_04_26_2; 2010_05_10_1 +36,flu_00037,2017-05-30 to 2017-06-13,H5N8 subtype,"Gyeonggi Province (admin level 1); Gunsan (admin level 2), North Jeolla Province (admin level 1); Jeju (admin level 1); North Jeolla Province (admin level 1)",South Korea,Aves; Corvus macrorhynchos; Gallus gallus; Anas; Galliformes,2017_06_13_3; 2017_05_30_8; 2017_06_06_6 +37,flu_00038,2010-05-10 to 2010-07-16,H5N1 subtype,"Boyolali (admin level 2), Central Java Province (admin level 1); Pontianak (admin level 2), Kalimantan Barat (admin level 1); Jambi Province (admin level 1); Riau Province (admin level 1); Pontianak, Indonesia (admin level 2), Kalimantan Barat (admin level 1); Jakarta (admin level 1); Central Java Province (admin level 1)",Indonesia,Homo sapiens; Galliformes; Phasianidae; Sus scrofa; Aves; Anas; Gallus gallus,2010_07_23_2; 2010_06_29_3; 2010_06_07_5; 2010_05_28_3; 2010_05_17_2; 2010_05_10_3; 2010_07_02_4 +38,flu_00039,2012-02-24 to 2012-02-24,H5N1 subtype,Yangon Region (admin level 1); Mandalay Region (admin level 1); Sagaing Region (admin level 1),Myanmar,Aves; Gallus gallus; Galliformes,2012_03_06_3 +39,flu_00040,2006-11-14 to 2007-06-04,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Hunan (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1); Hong Kong (admin level 1); Lhasa (admin level 2), Tibet (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Homo sapiens; Falco peregrinus; Corvus splendens; Galliformes; Psittacidae; Pionus menstruus; Aves; Anas; Pica pica; Lonchura punctulata; Gallus gallus; Sturnus sericeus; Lanius schach; Sturnus vulgaris,2007_03_20_1; 2007_01_18_1; 2007_04_06_1; 2007_03_08_1; 2007_05_30_2; 2007_02_16_1; 2007_01_08_2; 2007_06_12_1; 2007_06_22_1; 2007_06_01_1; 2006_11_14_1; 2007_01_22_1; 2007_06_15_1; 2007_02_07_1 +40,flu_00041,2011-09-15 to 2012-01-07,H5N1 subtype,"Denpasar (admin level 2), Bali (admin level 1); Special Region of Yogyakarta (admin level 1); Mataram (admin level 2), West Nusa Tenggara (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); South Sulawesi (admin level 1); North Jakarta (admin level 2), Jakarta (admin level 1); North Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Bali (admin level 1); Central Java Province (admin level 1); Kabupatèn Lombok Wétan (admin level 2), West Nusa Tenggara (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Galliformes,2011_12_06_3; 2011_10_07_1; 2012_02_02_8; 2011_11_17_9; 2011_10_18_1; 2011_10_24_1; 2011_10_31_1; 2011_09_21_4; 2011_10_24_2; 2011_09_15_4; 2011_10_18_3 +41,flu_00042,2008-04-21 to 2008-05-05,H5N1 subtype,Aomori Prefecture (admin level 1); Akita Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas,2008_05_02_1; 2008_05_16_1 +42,flu_00043,2014-11-26 to 2015-01-30,H5N1 subtype,"Chandigarh (admin level 1); Kollam (admin level 2), Kerala (admin level 1); Kottayam district (admin level 2), Kerala (admin level 1)",India,Aves; Anser; Anas; Gallus gallus; Galliformes,2014_11_26_2; 2014_12_19_5; 2015_01_30_2 +43,flu_00044,2015-12-12 to 2016-06-07,H5N6 subtype,"Huizhou (admin level 2), Guangdong (admin level 1); Ganzhou (admin level 2), Jiangxi (admin level 1); Hong Kong (admin level 1); Guangdong (admin level 1); Xiangxi Tujia eta Miao Prefektura autonomoa (admin level 2), Hunan (admin level 1); Zhuzhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Hunan (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2015_12_18_1; 2016_02_29_2; 2016_03_21_7; 2016_01_08_6; 2016_03_14_1; 2016_01_22_9; 2016_01_22_1; 2016_05_06_6; 2016_01_15_6; 2016_06_10_5; 2016_06_07_7; 2016_01_08_1; 2016_03_21_1; 2016_05_03_4 +44,flu_00045,2012-12-03 to 2012-12-03,H5N1 subtype,Damietta Governorate (admin level 1),Egypt,Homo sapiens; Galliformes,2012_12_21_3 +45,flu_00046,2014-09-25 to 2014-10-25,H5N1 subtype,"Reggenza di Bone Bolango (admin level 2), Gorontalo Province (admin level 1); Gorontalo Province (admin level 1)",Indonesia,Gallus gallus,2014_11_03_9 +46,flu_00047,2011-12-12 to 2012-03-12,H5N1 subtype,"Tibet (admin level 1); Sangdang-gu (admin level 2), Cheongju (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Stueng Hav District (admin level 2), Sihanoukville (admin level 1)",People's Republic of China,Homo sapiens; Copsychus saularis; Galliformes; Falco peregrinus calidus; Cepora; Aves; Chroicocephalus ridibundus; Columbidae; Gallus gallus,2011_12_22_5; 2012_01_06_5; 2012_03_06_1; 2012_03_12_1; 2012_01_06_1; 2012_02_29_1; 2011_12_16_4; 2012_02_22_2 +47,flu_00048,2007-07-17 to 2007-07-17,H5N1 subtype,Bezirk Erfurt (admin level 1),East Germany,Aves; Anas; Galliformes,2007_07_17_3 +48,flu_00049,2007-07-05 to 2007-09-04,H5N1 subtype,"Bavaria (admin level 1); Lower Saxony (admin level 1); Thuringia (admin level 1); Kreis Jena-Land (admin level 2), Gera District (admin level 1)",Germany,Aves; Anas; Galliformes,2007_07_17_3; 2007_07_05_2; 2007_09_04_2 +49,flu_00050,2013-07-18 to 2013-09-23,H5N1 subtype,Prey Veng Province (admin level 1); Kandal Province (admin level 1); Battambang Province (admin level 1); Kampot Province (admin level 1),Cambodia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2013_09_23_2; 2013_08_23_3; 2013_08_19_2; 2013_07_18_2 +50,flu_00051,2012-11-30 to 2012-12-31,H5N1 subtype,"Semarang (admin level 2), Central Java Province (admin level 1); Banten Province (admin level 1); West Java Province (admin level 1); Bogor (admin level 2), West Java Province (admin level 1)",Indonesia,Gallus gallus; Anas; Homo sapiens; Galliformes,2012_12_27_2; 2012_02_02_8; 2012_12_21_4; 2013_01_25_1; 2012_12_21_1; 2012_12_14_2 +51,flu_00052,2007-05-01 to 2007-05-03,H5N1 subtype,United States Virgin Islands (admin level 1),United States of America,Aves,2007_05_03_2; 2007_05_11_1 +52,flu_00053,2012-11-15 to 2013-05-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Homo sapiens; Galliformes,2012_12_27_1; 2013_02_11_2; 2012_02_02_11; 2013_04_30_4; 2012_11_15_1; 2013_05_03_1 +53,flu_00054,2017-12-21 to 2017-12-21,H5N8 subtype,"Gorzów County (admin level 2), Lubusz Voivodeship (admin level 1)",Poland,Aves; Gallus gallus; Anas,2017_01_10_16 +54,flu_00055,2016-11-23 to 2016-12-20,Influenza A virus,Republic of Kalmykia (admin level 1); Astrakhan Oblast (admin level 1),Russia,Aves; Homo sapiens; Galliformes,2016_12_13_18; 2016_12_20_14 +55,flu_00056,2007-12-14 to 2007-12-25,H5N1 subtype,"Berlin (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1); Lower Saxony (admin level 1); Neubrandenburg District (admin level 1)",Germany,Aves; Gallus gallus; Galliformes,2007_12_21_3; 2008_01_04_5; 2008_10_09_4; 2008_01_25_3 +56,flu_00057,2016-11-07 to 2017-02-01,H5N8 subtype,Mecklenburg-Vorpommern (admin level 1); Brandenburg (admin level 1),Germany,Homo sapiens; Galliformes; Laridae; Aves; Anas platyrhynchos; Larus marinus; Anas; Gallus gallus,2017_02_01_3; 2016_12_06_4; 2016_12_13_5; 2016_11_15_4; 2016_11_15_10; 2016_12_06_9 +57,flu_00058,2009-04-11 to 2009-05-09,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Aves; Galliformes,2009_06_19_1 +58,flu_00059,2009-10-10 to 2009-10-19,H1N1 subtype,Norway (country),Norway,Sus scrofa; Galliformes,2009_10_22_1; 2009_11_20_3 +59,flu_00060,2012-08-06 to 2012-08-20,H5N1 subtype,"Hai Duong (admin level 1); Ninh Binh (admin level 2), Ninh Bình (admin level 1); Nam Dinh (admin level 2), Nam Định (admin level 1)",Vietnam,Aves; Galliformes,2012_08_06_2; 2012_08_10_1; 2012_08_20_1 +60,flu_00061,2015-01-16 to 2015-02-13,H5N8 subtype,"Sejong City (admin level 1); Busan (admin level 1); Anseong (admin level 2), Gyeonggi Province (admin level 1); Seoul (admin level 1)",South Korea,Aves; Anser; Anas; Gallus gallus,2015_02_13_1; 2015_01_16_2 +61,flu_00062,2010-01-12 to 2010-01-12,H1N1 subtype,Yamagata Prefecture (admin level 1),Japan,Sus scrofa,2010_01_27_2 +62,flu_00063,2012-06-11 to 2012-06-11,Influenza A virus,Amur Oblast (admin level 1),Russia,Galliformes,2012_06_11_5 +63,flu_00064,2013-09-09 to 2013-09-09,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves; Galliformes,2013_09_09_3 +64,flu_00065,2008-07-10 to 2009-04-22,H5N1 subtype,"Pekanbaru (admin level 2), Riau Province (admin level 1); Wonogiri (admin level 2), Central Java Province (admin level 1); Bandung Regency (admin level 2), West Java Province (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Ngawi (admin level 2), East Java (admin level 1); Central Sulawesi Province (admin level 1); Bantul (admin level 2), Special Region of Yogyakarta (admin level 1); Malang (admin level 2), East Java (admin level 1); Kabupatén Tangerang (admin level 2), Banten Province (admin level 1); East Java (admin level 1); Tombali Region (admin level 1); Jakarta (admin level 1); Kepulauan Riau (admin level 1); Depok (admin level 2), West Java Province (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Bekasi (admin level 2), West Java Province (admin level 1); Banten Province (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Lonchura punctulata; Galliformes,2009_03_10_5; 2009_02_13_5; 2008_11_14_5; 2009_02_13_9; 2009_03_30_5; 2008_07_18_3; 2008_10_16_3; 2009_04_20_5; 2008_09_26_4; 2009_04_08_5; 2009_05_05_1; 2008_09_08_3; 2008_11_26_3; 2009_03_23_3; 2009_01_21_6; 2008_12_12_4; 2009_01_30_8; 2009_01_30_3; 2008_11_26_2 +65,flu_00066,2015-01-23 to 2015-01-23,H5N1 subtype,Haifa District (admin level 1),Israel,Aves,2015_01_23_3 +66,flu_00067,2009-11-06 to 2010-01-12,H1N1 subtype,New York (admin level 1); North Carolina (admin level 1); Indiana (admin level 1),United States of America,Aves; Canis lupus familiaris; Sus scrofa; Homo sapiens,2009_11_06_7; 2009_11_20_4; 2010_01_12_13 +67,flu_00068,2010-12-18 to 2011-03-14,H5N1 subtype,"Fukushima Prefecture (admin level 1); Tokushima Prefecture (admin level 1); Ibaraki Prefecture (admin level 1); Yamaguchi Prefecture (admin level 1); Chiba Prefecture (admin level 1); Aomori Prefecture (admin level 1); Nara Prefecture (admin level 1); Moita (admin level 2), Setúbal District (admin level 1); Kagoshima Prefecture (admin level 1); Aichi Prefecture (admin level 1); Shimane Prefecture (admin level 1); Nagasaki Prefecture (admin level 1); Tochigi Prefecture (admin level 1); Mie Prefecture (admin level 1); Miyazaki Prefecture (admin level 1)",Japan,Galliformes; Aves; Anas platyrhynchos; Anas; Gallus gallus; Podiceps cristatus,2011_03_15_5; 2011_02_22_6; 2011_02_28_1; 2011_03_22_1; 2011_03_07_1; 2011_02_08_1; 2011_02_22_2; 2011_01_24_2; 2011_02_08_3; 2011_01_28_3; 2011_03_22_4; 2011_02_11_7; 2011_02_11_1; 2011_01_28_5; 2011_01_14_1 +68,flu_00069,2015-11-20 to 2015-11-20,H5N1 subtype,Battambang Province (admin level 1); Siem Reap Province (admin level 1),Cambodia,Aves; Anas,2015_11_20_2 +69,flu_00070,2016-11-25 to 2017-02-07,H5N8 subtype,"Gotland County (admin level 1); Norrköping Chū-tī-chhī (admin level 2), Östergötland County (admin level 1); Stockholm County (admin level 1); Utö landskommun (admin level 2), Haninge Municipality (admin level 1)",Sweden,Aves; Anas platyrhynchos; Gallus gallus; Galliformes,2017_02_07_15; 2017_01_10_5; 2016_12_06_19 +70,flu_00071,2009-03-02 to 2009-07-25,H5N1 subtype,"Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Ha Tinh (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1); Bac Lieu (admin level 1); Dong Thap Province (admin level 1); Vinh Long (admin level 2), Vĩnh Long (admin level 1); Ca Mau (admin level 1); Long Xuyen (admin level 2), An Giang (admin level 1); Hau Giang (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2009_08_03_5; 2009_03_23_5; 2009_06_29_3; 2009_03_02_8; 2009_05_22_2 +71,flu_00072,2015-03-02 to 2015-05-22,H5N1 subtype,"Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2015_05_22_6; 2015_03_20_7; 2015_03_02_9; 2015_04_17_6 +72,flu_00073,2008-02-01 to 2008-09-11,H5N1 subtype,"Lampung Province (admin level 1); Riau Province (admin level 1); North Sumatra Province (admin level 1); West Java Province (admin level 1); Asahan (admin level 2), North Sumatra Province (admin level 1); Jakarta (admin level 1); Kabupaten Bekasi (admin level 2), West Java Province (admin level 1); Banten Province (admin level 1); South Jakarta (admin level 2), Jakarta (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Galliformes,2008_05_23_3; 2008_02_20_3; 2008_02_01_4; 2008_06_26_4; 2008_08_11_5; 2008_09_11_4; 2008_08_15_3; 2008_04_03_5 +73,flu_00074,2009-01-09 to 2009-06-05,H5N1 subtype,Qena Governorate (admin level 1); Suez Governorate (admin level 1); Qalyubia Governorate (admin level 1); Beheira Governorate (admin level 1); Asyut Governorate (admin level 1); Alexandria Governorate (admin level 1); Cairo Governorate (admin level 1); Sohag Governorate (admin level 1),Egypt,Anser; Homo sapiens; Galliformes; Aves; Anas; Gallus gallus,2009_05_01_4; 2009_01_21_5; 2009_02_06_9; 2009_05_11_4; 2009_03_23_4; 2009_06_12_4; 2009_03_30_4; 2009_05_15_3; 2009_04_28_3; 2009_04_14_3; 2009_06_05_3; 2009_03_10_4; 2009_04_08_4; 2009_02_13_4; 2009_03_17_9; 2009_02_13_8; 2009_05_22_3 +74,flu_00075,2016-11-15 to 2016-12-20,H5N6 subtype,"Seoul (admin level 1); Cheongju (admin level 2), North Chungcheong Province (admin level 1); Yangju (admin level 2), Gyeonggi Province (admin level 1); Muan megye (admin level 2), South Jeolla Province (admin level 1)",South Korea,Homo sapiens; Galliformes; Sus scrofa; Aves; Anas; Gallus gallus,2016_11_18_8; 2016_12_20_15; 2016_12_29_7; 2016_11_15_7; 2016_12_01_10; 2016_12_29_3 +75,flu_00076,2016-01-16 to 2016-03-04,H5N1 subtype,Cairo Governorate (admin level 1); Giza Governorate (admin level 1),Egypt,Aves; Homo sapiens,2016_01_22_2; 2016_01_29_5; 2016_03_21_9 +76,flu_00077,2016-01-06 to 2016-07-26,H7N9 subtype,"Beijing (admin level 1); Jiangsu (admin level 1); Liaoning (admin level 1); Henan (admin level 1); Yongzhou (admin level 2), Hunan (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1); Zhejiang (admin level 1); Guangdong (admin level 1); Langfang (admin level 2), Hebei (admin level 1); Fujian (admin level 1); Shaoxing (admin level 2), Zhejiang (admin level 1); Shenyang (admin level 2), Liaoning (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Zhaoqing (admin level 2), Guangdong (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Hubei (admin level 1); Chaozhou (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Tianjin (admin level 1); Hong Kong (admin level 1); Hunan (admin level 1); Jiangxi (admin level 1); Jieyang (admin level 2), Guangdong (admin level 1); Longyan (admin level 2), Fujian (admin level 1); Shantou (admin level 2), Guangdong (admin level 1)",People's Republic of China,Aves; Homo sapiens; Galliformes,2016_01_29_4; 2016_01_08_7; 2016_02_29_5; 2016_03_14_9; 2016_02_08_7; 2016_05_06_7; 2016_06_07_8; 2016_01_15_7; 2016_07_29_5; 2016_05_27_2; 2016_02_16_3; 2016_05_20_7; 2016_09_01_3; 2016_02_22_7; 2016_07_12_5; 2016_04_26_10; 2016_03_21_8; 2016_04_26_11; 2016_06_17_4; 2016_06_10_2 +77,flu_00078,2009-04-14 to 2009-05-11,H5N1 subtype,"Lincoln County (admin level 2), Mississippi (admin level 1); Giles County (admin level 2), Tennessee (admin level 1); Kentucky (admin level 1)",United States of America,Aves; Gallus gallus; Homo sapiens; Galliformes,2009_05_11_3; 2009_04_14_2 +78,flu_00079,2010-10-15 to 2011-05-09,H5N1 subtype,Qena Governorate (admin level 1); Gharbia Governorate (admin level 1); Aswan Governorate (admin level 1); Alexandria Governorate (admin level 1); Beni Suef Governorate (admin level 1); Luxor Governorate (admin level 1); Giza Governorate (admin level 1),Egypt,Gallus gallus; Homo sapiens; Galliformes,2010_12_09_5; 2011_04_12_4; 2011_01_14_7; 2010_10_15_2; 2011_06_07_5; 2011_02_08_4; 2011_03_07_3; 2011_01_24_6 +79,flu_00080,2015-07-10 to 2015-11-20,H5N1 subtype,Bayelsa State (admin level 1); Lagos (admin level 1); Kano State (admin level 1),Nigeria,Aves; Gallus gallus; Anas; Homo sapiens,2015_09_30_2; 2015_08_07_5; 2015_08_28_2; 2015_09_18_3; 2015_07_31_4; 2015_08_24_5; 2015_07_10_2; 2015_07_20_3; 2015_11_20_3; 2015_10_05_3 +80,flu_00081,2009-10-26 to 2009-10-26,H5N1 subtype,Tuva Republic (admin level 1); Moscow (admin level 1),Russia,Aves; Podicipedidae; Galliformes,2009_11_06_1 +81,flu_00082,2010-12-01 to 2011-03-15,H5N1 subtype,Qinghai (admin level 1); Hong Kong (admin level 1),People's Republic of China,Gallus gallus; Anser; Aves; Copsychus saularis; Galliformes,2011_01_28_2; 2011_02_11_5; 2011_03_15_2; 2011_01_24_1; 2010_12_03_1 +82,flu_00083,2014-10-01 to 2015-03-06,H5N1 subtype,Giza Governorate (admin level 1); Faiyum Governorate (admin level 1); Beheira Governorate (admin level 1); Sohag Governorate (admin level 1); Beni Suef Governorate (admin level 1); Cairo Governorate (admin level 1); Minya Governorate (admin level 1),Egypt,Aves; Gallus gallus; Homo sapiens; Galliformes,2014_12_16_5; 2014_12_19_6; 2014_12_09_6; 2015_03_06_7; 2015_01_23_12; 2015_02_13_6; 2014_12_29_8; 2014_10_06_2; 2015_01_30_8; 2015_03_13_5; 2015_03_02_13; 2014_12_23_6; 2014_11_25_4 +83,flu_00084,2013-08-19 to 2013-09-09,H7N7 subtype,"Provincia de Ferrara (admin level 2), Emilia-Romagna (admin level 1); Ferrara (admin level 2), Emilia-Romagna (admin level 1); Bologna (admin level 2), Emilia-Romagna (admin level 1); Provincia Augustae Praetoriensis (admin level 2), Piedmont (admin level 1)",Italy,Phasianidae; Aves; Galliformes,2013_08_29_1; 2013_09_13_2; 2013_09_09_2 +84,flu_00085,2016-10-03 to 2016-11-25,H5N2 subtype,South Africa (country),South Africa,Aves,2016_12_06_17; 2016_10_03_3 +85,flu_00086,2016-07-05 to 2016-07-05,H5N1 subtype,Lagos (admin level 1),Nigeria,Aves,2016_07_05_3 +86,flu_00087,2009-12-22 to 2009-12-22,H1N1 subtype,England (admin level 1),United Kingdom,Sus scrofa,2010_01_12_12 +87,flu_00088,2010-01-04 to 2010-02-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Sirajganj (distrito sa Bangladesh) (admin level 2), Rajshahi Division (admin level 1); Rajshahi Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2010_02_03_1; 2010_02_03_4; 2010_01_27_3 +88,flu_00089,2011-04-14 to 2011-07-11,H5N1 subtype,"Banda Aceh (admin level 2), Aceh (admin level 1); South Sulawesi (admin level 1)",Indonesia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2011_04_28_8; 2011_06_10_3; 2011_06_20_1; 2011_07_11_2 +89,flu_00090,2009-08-05 to 2009-09-08,H5N1 subtype,"Meeker County (admin level 2), Minnesota (admin level 1)",United States of America,Aves; Anas; Homo sapiens; Galliformes,2009_09_01_1; 2009_09_08_1; 2009_08_07_2 +90,flu_00091,2015-08-18 to 2015-10-05,H5N2 subtype,South Africa (country),South Africa,Aves,2015_09_30_3; 2015_08_18_4; 2015_10_05_4 +91,flu_00092,2014-05-11 to 2014-07-21,H7N9 subtype,Hunan (admin level 1); Anhui Province (admin level 1); Jiangsu (admin level 1); Shanghai (admin level 1); Hong Kong (admin level 1); Guangdong (admin level 1); Jiangsu Province (Republic of China) (admin level 1); Shandong (admin level 1),People's Republic of China,Homo sapiens; Galliformes,2014_05_30_1; 2014_06_06_1; 2014_06_17_2; 2014_05_16_1; 2014_05_23_1; 2014_07_21_1; 2014_05_16_2 +92,flu_00093,2010-03-26 to 2010-06-07,H5N1 subtype,"Tibet (admin level 1); Hong Kong (admin level 1); Ezhou (admin level 2), Hubei (admin level 1)",People's Republic of China,Anser indicus; Homo sapiens; Mareca penelope; Cepora; Larus brunnicephalus; Aves; Pyrrhocorax pyrrhocorax,2010_06_11_1; 2010_04_02_2; 2010_07_12_1; 2010_07_16_1; 2010_06_07_4 +93,flu_00094,2010-02-24 to 2010-04-01,H5N1 subtype,Gharbia Governorate (admin level 1); Qalyubia Governorate (admin level 1); Damietta Governorate (admin level 1),Egypt,Anas; Homo sapiens; Galliformes,2010_03_26_3; 2010_03_09_5; 2010_04_02_4; 2010_05_28_1 +94,flu_00095,2013-11-04 to 2014-03-07,H5N1 subtype,"Dong Thap Province (admin level 1); Bac Ninh (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1)",Vietnam,Aves; Anas; Homo sapiens; Galliformes,2014_02_07_5; 2013_11_08_1; 2014_02_19_5; 2014_01_09_5; 2014_03_07_5; 2014_01_22_2 +95,flu_00096,2015-09-30 to 2015-11-20,H5N8 subtype,"North Pyeongan Province, Republic of Korea (admin level 1); North Chungcheong Province (admin level 1); South Jeolla Province (admin level 1); district de Eumseong (admin level 2), North Chungcheong Province (admin level 1)",South Korea,Aves; Gallus gallus; Anas,2015_09_30_4; 2015_10_05_5; 2015_11_20_4; 2015_10_28_4 +96,flu_00097,2012-03-23 to 2012-05-22,H5N2 subtype,Taichung (admin level 1),Taiwan,Aves; Gallus gallus; Anas,2012_05_22_3; 2012_04_09_3 +97,flu_00098,2009-09-14 to 2009-09-14,H1N1 subtype,"West Kansas (admin level 1); Riley County (admin level 2), Kansas (admin level 1)",United States of America,Homo sapiens,2009_09_14_3 +98,flu_00099,2007-06-12 to 2007-06-12,H5N1 subtype,Selangor (admin level 1); Kuala Lumpur (admin level 1),Malaysia,Gallus gallus; Galliformes,2007_06_12_3 +99,flu_00100,2015-08-07 to 2016-01-22,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves; Gallus gallus; Homo sapiens; Anser,2015_09_04_4; 2015_11_20_5; 2016_01_22_8; 2015_10_05_6; 2015_10_14_4; 2016_01_15_5; 2015_11_25_5; 2015_08_07_8; 2015_12_18_5; 2015_08_28_5 +100,flu_00101,2009-01-14 to 2009-06-12,H5N1 subtype,"Manipur (admin level 1); Balrampur district (admin level 2), Uttar Pradesh (admin level 1); Districte de North Dinajpur (admin level 2), West Bengal (admin level 1); West Bengal (admin level 1); Uttar Dinajpur district (admin level 2), West Bengal (admin level 1); Darjeeling District (admin level 2), West Bengal (admin level 1); Darjeeling (admin level 2), West Bengal (admin level 1); Assam (admin level 1)",India,Aves; Gallus gallus; Anas; Anser; Galliformes,2009_02_06_4; 2009_03_23_2; 2009_04_08_2; 2009_02_23_6; 2009_01_14_5; 2009_05_01_2; 2009_06_12_2; 2009_06_05_2; 2009_06_01_2; 2009_03_02_4; 2009_05_01_1; 2009_03_23_1; 2009_03_02_2 +101,flu_00102,2010-08-06 to 2010-09-29,H5N1 subtype,"Bengkulu Province (admin level 1); Aceh (admin level 1); Kabupaten Pinrang (admin level 2), South Sulawesi (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Galliformes,2010_10_01_2; 2010_08_16_6; 2010_08_16_4; 2010_08_18_4; 2010_08_18_6; 2010_09_09_2 +102,flu_00103,2009-04-12 to 2009-04-12,H1N1 subtype,Alberta (admin level 1),Canada,Sus scrofa,2009_05_11_1 +103,flu_00104,2010-01-05 to 2010-01-20,H5N1 subtype,"district de Murshidabad (admin level 2), West Bengal (admin level 1); Murshidabad district (admin level 2), West Bengal (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Assam (admin level 1)",India,Aves; Anser; Anas; Gallus gallus; Galliformes,2010_01_20_2; 2010_01_12_2 +104,flu_00105,2011-01-01 to 2011-06-22,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Kishoreganj District (admin level 2), Dhaka Division (admin level 1); Rajshahi Division (admin level 1); Bhola District (admin level 2), Barisal Division (admin level 1); Dhaka Division (admin level 1); Noakhali District (admin level 2), Chattogram Division (admin level 1); Kalamazoo County (admin level 2), Michigan (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Homo sapiens; Galliformes,2011_02_22_3; 2011_04_05_7; 2011_05_25_1; 2011_01_14_3; 2011_03_15_1; 2011_03_22_5; 2011_02_08_2; 2011_07_11_1; 2011_03_29_3 +105,flu_00106,2013-02-01 to 2013-05-23,H5N1 subtype,Tibet (admin level 1); Guizhou (admin level 1); Tibet Autonomous Region (admin level 1); Shanghai (admin level 1); Hong Kong (admin level 1); Zhejiang (admin level 1),People's Republic of China,Anser; Homo sapiens; Galliformes; Aves; Chroicocephalus ridibundus; Gallus gallus,2013_02_01_1; 2013_02_15_3; 2013_03_01_4; 2013_04_12_3; 2013_05_23_4 +106,flu_00107,2010-07-02 to 2010-07-18,H5N1 subtype,"Gia Lai (admin level 1); Juneau, Alaska (admin level 2), Alaska (admin level 1)",United States of America,Aves; Gallus gallus; Anas; Galliformes,2010_07_02_1; 2010_08_18_5; 2010_08_16_5 +107,flu_00108,2007-01-07 to 2007-02-07,H5N1 subtype,"West Java Province (admin level 1); Bali (admin level 1); Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Sus scrofa; Gallus gallus; Anas; Homo sapiens,2007_02_07_5; 2007_01_18_3 +108,flu_00109,2010-12-07 to 2011-05-16,H5N1 subtype,"Yeoncheon (admin level 2), Gyeonggi Province (admin level 1); North Chungcheong Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1); Sacheon (admin level 2), South Gyeongsang Province (admin level 1); Sangju (admin level 2), North Gyeongsang Province (admin level 1); Gyeonggi Province (admin level 1); Yeongam County (admin level 2), South Jeolla Province (admin level 1); Anseong Chhī (admin level 2), Gyeonggi Province (admin level 1); Icheon (admin level 2), Gyeonggi Province (admin level 1); South Jeolla Province (admin level 1); North Jeolla Province (admin level 1); Pyeongtaek (admin level 2), Gyeonggi Province (admin level 1); Seosan (admin level 2), South Chungcheong Province (admin level 1); Seoul (admin level 1)",South Korea,Aix galericulata; Homo sapiens; Galliformes; Aves; Anas platyrhynchos; Anas; Gallus gallus,2011_01_14_2; 2010_12_09_1; 2011_01_14_5; 2010_12_17_1; 2011_02_22_7; 2011_04_05_2; 2011_06_07_1; 2011_01_28_6; 2011_01_24_5; 2011_03_15_8 +109,flu_00110,2014-01-16 to 2014-03-20,H5N8 subtype,"Gochang (admin level 2), North Jeolla Province (admin level 1); South Gyeongsang Province (admin level 1); Gyeonggi Province (admin level 1); Gwacheon (admin level 2), Gyeonggi Province (admin level 1); South Chungcheong Province (admin level 1); North Jeolla Province (admin level 1); Busan (admin level 1); Seoul (admin level 1)",South Korea,Homo sapiens; Galliformes; Anser fabalis; Aves; Anas; Gallus gallus,2014_03_20_6; 2014_01_22_1; 2014_01_31_1; 2014_02_19_6; 2014_03_20_1; 2014_09_30_4 +110,flu_00111,2011-06-30 to 2011-06-30,H5N1 subtype,"Ratchasan (admin level 2), Chachoengsao (admin level 1); West Java Province (admin level 1)",Thailand,Aves; Homo sapiens,2011_07_11_4 +111,flu_00112,2014-01-24 to 2014-04-10,H5N1 subtype,Kratié Province (admin level 1); Kandal Province (admin level 1); Siem Reap Province (admin level 1); Kampot Province (admin level 1); Kampong Chhnang Province (admin level 1),Cambodia,Aves; Gallus gallus; Homo sapiens; Galliformes,2014_02_07_2; 2014_03_20_7; 2014_03_07_8; 2014_04_10_6; 2014_03_07_12; 2014_04_10_8 +112,flu_00113,2011-11-12 to 2012-02-26,H5N1 subtype,"Khulna Division (admin level 1); distretto di Meherpur (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Homo sapiens; Galliformes,2011_12_22_2; 2012_03_06_6; 2012_01_06_3; 2012_02_02_2; 2011_11_17_5 +113,flu_00114,2006-12-26 to 2007-04-06,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Phitsanulok (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Merops philippinus; Galliformes; Aves; Anas; Columbidae; Gallus gallus; Aegypius monachus,2007_02_07_4; 2007_04_06_2; 2007_01_22_2; 2010_11_05_1 +114,flu_00115,2011-09-15 to 2011-09-15,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Galliformes,2011_09_15_8 +115,flu_00116,2013-01-25 to 2013-03-01,H5N1 subtype,Kampong Cham Province (admin level 1); Kampong Speu Province (admin level 1); Kampot Province (admin level 1),Cambodia,Aves; Homo sapiens; Galliformes,2013_01_25_2; 2013_03_01_3; 2013_02_15_2; 2013_02_01_3 +116,flu_00117,2011-02-10 to 2011-05-21,H5N1 subtype,Aswan Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Homo sapiens,2011_06_20_6; 2011_03_15_9; 2011_04_12_4; 2011_04_05_6 +117,flu_00118,2016-07-26 to 2016-07-26,H7N9 subtype,Jiangsu (admin level 1); Zhejiang (admin level 1),People's Republic of China,Homo sapiens,2016_07_26_2 +118,flu_00119,2015-10-16 to 2015-11-25,H7N9 subtype,Guangdong (admin level 1); Jiangsu (admin level 1); Zhejiang (admin level 1),People's Republic of China,Homo sapiens; Galliformes,2015_11_13_4; 2016_07_26_2; 2016_01_15_7; 2015_11_25_6; 2015_10_16_5 +119,flu_00120,2014-02-06 to 2014-04-20,H5N1 subtype,East Java (admin level 1),Indonesia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2014_02_19_3; 2014_06_23_4; 2014_09_10_3; 2014_02_19_4 +120,flu_00121,2013-03-25 to 2013-06-27,H7N9 subtype,"Guangdong (admin level 1); Zhejiang (admin level 1); Beijing (admin level 1); Jiangsu (admin level 1); Hebei (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Hangzhou (kapital sa lalawigan sa Republikang Popular sa Tsina) (admin level 2), Zhejiang (admin level 1); Fujian (admin level 1)",People's Republic of China,Anser; Homo sapiens; Galliformes; Aves; Anas; Columbidae; Gallus gallus,2013_06_07_1; 2013_04_19_4; 2013_04_12_1; 2015_03_02_10; 2013_05_03_3; 2013_04_08_1; 2013_08_23_2; 2013_04_12_5; 2013_05_30_5; 2014_12_09_5; 2013_05_24_1; 2013_06_28_2; 2013_05_13_1; 2013_05_30_1; 2013_04_30_3; 2013_05_13_3 +121,flu_00122,2014-07-22 to 2014-07-22,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes,2014_10_15_2 +122,flu_00123,2015-05-15 to 2015-05-15,H5N8 subtype,"Whitley County (admin level 2), Indiana (admin level 1)",United States of America,Aves; Gallus gallus; Anas; Galliformes,2015_05_15_5 +123,flu_00124,2016-02-08 to 2016-02-08,Influenza A virus,Guangdong (admin level 1),People's Republic of China,Gallus gallus,2016_02_08_2 +124,flu_00125,2013-05-30 to 2013-05-30,H7N9 subtype,Beijing (admin level 1); Bar Municipality (admin level 1),Montenegro,Homo sapiens,2013_05_30_4 +125,flu_00126,2017-07-05 to 2017-07-06,H3N8 subtype,United States of America (country),United States of America,Aves; Homo sapiens,2017_07_14_1; 2017_07_05_1 +126,flu_00127,2010-04-17 to 2010-04-25,H5N1 subtype,"Apriltsi Municipality (admin level 2), Lovech Province (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Galliformes,2010_05_28_2; 2010_05_04_1 +127,flu_00128,2008-06-13 to 2008-08-01,H5N1 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2008_06_19_4; 2008_06_13_1; 2008_08_01_2; 2008_06_19_2; 2011_12_22_3; 2008_06_26_2 +128,flu_00129,2011-02-16 to 2011-03-15,H5N1 subtype,"Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Kolkata district (admin level 2), West Bengal (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Tripura (admin level 1)",India,Aves; Anas; Galliformes,2011_02_22_4; 2011_03_15_3; 2011_03_22_2 +129,flu_00130,2015-04-17 to 2015-05-15,H5N2 subtype,Taichung (admin level 1),Taiwan,Aves; Anas,2015_04_17_5; 2015_05_15_3 +130,flu_00131,2010-02-26 to 2010-03-09,H5N1 subtype,"Jongtchong-gu (admin level 2), Suwon (admin level 1)",South Korea,Aves; Sus scrofa; Gallus gallus; Anas; Galliformes,2010_03_09_2 +131,flu_00132,2016-10-28 to 2016-12-07,H5N8 subtype,"Prasia Elysiorum (admin level 2), Lubusz Voivodeship (admin level 1); West Pomeranian Voivodeship (admin level 1)",Poland,Aves; Gallus gallus; Anas; Galliformes,2016_12_29_6; 2016_12_01_5; 2016_11_15_6 +132,flu_00133,2016-11-09 to 2016-12-13,H5N8 subtype,Austria (country),Austria,Aves,2016_12_13_1; 2016_11_15_9 +133,flu_00134,2009-12-11 to 2010-01-20,H5N1 subtype,"Ponhea Kraek District (admin level 2), Kampong Cham Province (admin level 1); Kompung Chinang (admin level 2), Kampong Chhnang Province (admin level 1)",Cambodia,Aves; Homo sapiens,2010_01_20_1; 2009_12_22_3 +134,flu_00135,2015-05-11 to 2015-05-11,H5N1 subtype,Kastamonu Vilayet (admin level 1),Ottoman Empire,Gallus gallus; Galliformes,2015_05_11_3 +135,flu_00136,2011-04-05 to 2011-04-05,H7N1 subtype,"Schoren (admin level 2), Canton of Bern (admin level 1)",Switzerland,Aves; Galliformes,2011_04_05_4 +136,flu_00137,2017-03-03 to 2017-03-30,Influenza A virus,South Chungcheong Province (admin level 1),South Korea,Aves; Gallus gallus; Anas,2017_05_12_7; 2017_03_08_7; 2017_03_03_5 +137,flu_00138,2011-11-17 to 2011-11-17,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes,2011_11_17_7 +138,flu_00139,2016-01-16 to 2016-01-19,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Homo sapiens; Galliformes,2016_01_22_11; 2016_01_22_10 +139,flu_00140,2011-05-18 to 2011-06-19,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Homo sapiens; Galliformes,2011_05_18_1; 2011_06_20_4 +140,flu_00141,2009-03-17 to 2009-03-30,H5N1 subtype,Aichi Prefecture (admin level 1),Japan,Aves; Homo sapiens; Galliformes,2009_03_17_5; 2009_03_30_3 +141,flu_00142,2014-09-16 to 2015-03-06,H7N9 subtype,"Beijing (admin level 1); Jiangsu (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Zhejiang (admin level 1); Zhuhai (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Fujian (admin level 1); Shandong (admin level 1); Chaoyang (admin level 2), Liaoning (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Shanghai (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Guangxi Zhuang Autonomous Region (admin level 1); Urumqi (admin level 2), Xinjiang (admin level 1); Dongguan (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Anhui (admin level 1); Hong Kong (admin level 1); Heyuan (admin level 2), Guangdong (admin level 1); Hunan (admin level 1); Guizhou (admin level 1); Jiangxi (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Jiangsu Province (Republic of China) (admin level 1)",People's Republic of China,Aves; Gallus gallus; Homo sapiens; Galliformes,2014_11_12_2; 2015_02_13_5; 2015_01_30_6; 2014_10_24_5; 2014_12_09_5; 2015_03_02_11; 2015_01_08_6; 2014_12_29_9; 2014_12_23_5; 2015_03_06_6; 2015_01_08_11; 2014_12_16_3; 2014_11_03_10 +142,flu_00143,2012-03-17 to 2012-03-19,H5N2 subtype,Waterschap Limburg (admin level 1),Netherlands,Aves; Galliformes,2012_03_23_4 +143,flu_00144,2016-05-07 to 2016-07-24,H5N1 subtype,Cairo Governorate (admin level 1); Al Sharqia Governorate (admin level 1); Qena Governorate (admin level 1); Giza Governorate (admin level 1),Egypt,Aves; Gallus gallus; Anas; Homo sapiens,2016_07_12_6; 2016_10_17_6; 2016_06_24_3; 2016_05_20_1 +144,flu_00145,2011-04-05 to 2011-04-05,H7N3 subtype,"Missouri (admin level 1); Polk County (admin level 2), Iowa (admin level 1)",United States of America,Phasianidae; Aves; Galliformes,2011_04_05_5 +145,flu_00146,2009-06-24 to 2009-06-24,H1N1 subtype,Buenos Aires Province (admin level 1),Argentina,Sus scrofa,2009_07_21_1 +146,flu_00147,2010-11-02 to 2010-11-02,H5N1 subtype,Connecticut (admin level 1),United States of America,Homo sapiens,2010_11_05_2 +147,flu_00148,2013-10-28 to 2013-11-01,H5N1 subtype,West Java Province (admin level 1),Indonesia,Gallus gallus; Homo sapiens,2013_11_26_2; 2013_10_28_3 +148,flu_00149,2016-11-04 to 2016-12-12,H5N8 subtype,"Stansstad (admin level 2), Nidwalden (admin level 1); Belmont-sur-Lausanne (admin level 2), Lavaux-Oron District (admin level 1); Oberhofen bei Kreuzlingen (admin level 2), Thurgau (admin level 1); Canton of Neuchâtel (admin level 1)",Switzerland,Galliformes; Laridae; Cepora; Aves; Anas platyrhynchos; Anas; Chroicocephalus ridibundus,2016_11_15_8; 2016_12_13_10; 2016_11_18_6 +149,flu_00150,2015-03-13 to 2015-05-29,H5N1 subtype,"Amethi district (admin level 2), Uttar Pradesh (admin level 1); Sultanpur district (admin level 2), Uttar Pradesh (admin level 1)",India,Homo sapiens; Corvus splendens; Aves; Anas; Columbidae; Gallus gallus,2015_04_17_4; 2015_03_27_2; 2015_03_20_4; 2015_05_29_3 +150,flu_00151,2010-02-19 to 2010-03-11,H5N1 subtype,Yangon Region (admin level 1); Sagaing Region (admin level 1),Myanmar,Aves; Gallus gallus; Anas; Galliformes,2010_03_11_2; 2010_03_09_3 +151,flu_00152,2013-01-18 to 2013-03-01,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves,2013_05_13_2; 2013_01_18_3 +152,flu_00153,2012-05-22 to 2012-05-22,H5N1 subtype,Tripura (admin level 1),India,Aves; Galliformes,2012_05_22_1 +153,flu_00154,2010-09-10 to 2010-09-10,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Aves,2010_09_10_1 +154,flu_00155,2008-03-28 to 2008-03-28,H5N1 subtype,Canton of Lucerne (admin level 1),Switzerland,Aves,2008_03_28_1 +155,flu_00156,2007-09-26 to 2007-09-26,H5N1 subtype,Nigeria (country),Nigeria,Galliformes,2008_08_15_2 +156,flu_00157,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves; Sus scrofa,2006_12_01_1 +157,flu_00158,2014-12-16 to 2014-12-29,H5N2 subtype,British Columbia (admin level 1),Canada,Aves; Gallus gallus; Homo sapiens; Galliformes,2014_12_16_2; 2014_12_23_1; 2014_12_29_3 +158,flu_00159,2015-03-27 to 2015-03-27,H5N1 subtype,"Obshtina Iskŭr (munisipyo sa Bulgaria) (admin level 2), Pleven Province (admin level 1); Burgas Province (admin level 1); Silistra Province (admin level 1)",Bulgaria,Chroicocephalus ridibundus; Pelecanidae; Galliformes,2015_03_27_1 +159,flu_00160,2007-02-26 to 2007-04-02,H5N1 subtype,"Dhaka Division (admin level 1); Naogaon District (admin level 2), Rajshahi Division (admin level 1)",Bangladesh,Homo sapiens; Galliformes; Aves; Anas; Columbidae; Gallus gallus,2007_06_22_3; 2008_01_18_3; 2009_01_14_2; 2007_04_02_3; 2008_10_24_2 +160,flu_00161,2008-01-04 to 2008-02-23,H5N1 subtype,"Natore District (admin level 2), Rajshahi Division (admin level 1); Meherpur (admin level 2), Khulna Division (admin level 1); Mymensingh Division (admin level 1); Dhaka Division (admin level 1); Dakshin Dinajpur district (admin level 2), West Bengal (admin level 1); Distrik Jessore (admin level 2), Khulna Division (admin level 1); Barisal Division (admin level 1); Chittagong (admin level 2), Chattogram Division (admin level 1)",Bangladesh,Galliformes; Corvus; Podiceps nigricollis; Aves; Anas; Columbidae; Gallus gallus,2008_02_01_1; 2008_02_08_4; 2008_01_25_2; 2008_01_10_3; 2008_02_08_2; 2008_02_20_2; 2008_01_18_3; 2008_03_03_2 +161,flu_00162,2005-12-26 to 2005-12-26,H5N1 subtype,Hunan (admin level 1),People's Republic of China,Gallus gallus; Anas,2008_06_06_1 +162,flu_00163,2008-10-02 to 2008-11-14,H5N1 subtype,"Sukhothai (admin level 1); Uthai Thani (admin level 1); Amphoe Thung Saliam (admin level 2), Sukhothai (admin level 1); Pho Prathap Chang (admin level 2), Phichit (admin level 1); Sawankhalok (admin level 1)",Thailand,Aves; Gallus gallus; Anas; Homo sapiens,2008_11_14_2; 2008_11_07_4; 2008_10_02_3 +163,flu_00164,2010-06-29 to 2010-06-29,H5N1 subtype,Tuva (admin level 1),Russia,Aves; Podiceps cristatus,2010_06_29_1 +164,flu_00165,2014-12-16 to 2015-01-08,H5N2 subtype,"Whatcom County (admin level 2), Washington (admin level 1); Benton County (admin level 2), Mississippi (admin level 1); Washington (admin level 1)",United States of America,Aves; Gallus gallus; Anas; Galliformes,2014_12_29_2; 2014_12_16_1; 2015_01_08_7 +165,flu_00166,2014-03-28 to 2014-03-28,H5N1 subtype,"Distrik Jessore (admin level 2), Khulna Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes,2014_04_10_1 +166,flu_00167,2011-01-29 to 2011-02-12,H5N1 subtype,"Russei Keo District (admin level 2), Phnom Penh (admin level 1); Kandal Province (admin level 1); Banteay Meanchey Province (admin level 1)",Cambodia,Gallus gallus; Homo sapiens; Galliformes,2011_02_11_8; 2011_02_11_4; 2011_02_28_5 +167,flu_00168,2011-09-06 to 2011-09-15,H5N1 subtype,"Manikganj District (admin level 2), Dhaka Division (admin level 1); Chuadanga District (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Gallus gallus; Galliformes,2011_09_15_6; 2011_09_15_2 +168,flu_00169,2008-08-28 to 2008-08-28,H5N1 subtype,"Lokossa (admin level 2), Mono Department (admin level 1); Parakou (admin level 2), Borgou Department (admin level 1)",Benin,Gallus gallus; Galliformes,2008_08_28_2 +169,flu_00170,2009-01-20 to 2009-02-23,H5N1 subtype,British Columbia (admin level 1),Canada,Aves; Homo sapiens; Galliformes,2009_02_23_5; 2009_01_30_2 +170,flu_00171,2007-07-03 to 2007-07-17,H5N1 subtype,"East Siberian Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1); Buryatia (admin level 1); Tomsk Oblast (admin level 1)",Russia,Aves; Galliformes,2007_07_20_2; 2007_07_05_3 +171,flu_00172,2008-06-19 to 2008-09-22,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Ben Tre (admin level 1); Long An (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2008_08_11_4; 2008_08_22_2; 2008_08_15_4; 2008_07_18_2; 2008_10_02_2; 2008_06_19_3 +172,flu_00173,2015-08-24 to 2015-12-04,H5N1 subtype,Vietnam (country),Vietnam,Aves,2015_12_04_4; 2015_10_16_4; 2015_08_24_7; 2015_09_04_3 +173,flu_00174,2007-11-04 to 2007-11-04,H5N1 subtype,Fukui Prefecture (admin level 1),Japan,Aves; Galliformes,2007_02_16_3 +174,flu_00175,2014-11-25 to 2015-01-08,Influenza A virus,Miyazaki Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2015_01_08_5; 2014_11_25_1 +175,flu_00176,2011-06-29 to 2011-09-30,H5N1 subtype,"Minnesota (admin level 1); Wright County (admin level 2), Iowa (admin level 1); Hong Kong (admin level 1)",United States of America,Aves; Homo sapiens; Galliformes,2011_09_30_1; 2011_07_06_4; 2011_08_11_3 +176,flu_00177,2015-08-07 to 2015-08-24,H5N1 subtype,State of Palestine (country),State of Palestine,Aves; Homo sapiens,2015_08_24_6; 2015_08_07_6 +177,flu_00178,2012-02-09 to 2012-04-16,H5N1 subtype,"Kota Denpasar (admin level 2), Bali (admin level 1); West Java Province (admin level 1); North Sumatra Province (admin level 1); West Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Bengkulu Province (admin level 1); Bali (admin level 1)",Indonesia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2012_02_22_6; 2012_04_12_6; 2012_03_12_5; 2012_04_09_4; 2012_02_29_6; 2012_04_16_1 +178,flu_00179,2010-03-29 to 2010-03-29,H5N1 subtype,Varna Province (admin level 1),Bulgaria,Aves,2010_04_02_1 +179,flu_00180,2012-08-30 to 2012-08-30,H5N1 subtype,"North 24 Parganas district (admin level 2), West Bengal (admin level 1)",India,Aves; Gallus gallus; Galliformes,2012_08_30_1 +180,flu_00181,2015-06-10 to 2015-06-10,Influenza A virus,"Gangjin (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1)",South Korea,Aves; Anas; Galliformes,2015_09_18_1 +181,flu_00182,2008-04-30 to 2008-04-30,H5N1 subtype,"Shpola Raion (admin level 2), Cherkasy Oblast (admin level 1)",Ukraine,Aves; Gallus gallus; Homo sapiens,2008_04_30_4 +182,flu_00183,2007-08-14 to 2007-11-01,H5N1 subtype,"West Jakarta (admin level 2), Jakarta (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Tangerang Selatan (admin level 2), Banten Province (admin level 1); Jakarta (admin level 1); Bogor Regency (admin level 2), West Java Province (admin level 1)",Indonesia,Gallus gallus; Anas; Homo sapiens; Galliformes,2007_10_05_3; 2012_02_02_8; 2007_11_01_4; 2007_08_14_2 +183,flu_00184,2013-05-01 to 2013-06-17,H7N3 subtype,"Puebla (admin level 1); Aguascalientes (admin level 1); Guanajuato (admin level 1); Jalisco (admin level 1); Palmar de Bravo Municipality (admin level 2), Puebla (admin level 1)",Mexico,Aves; Homo sapiens; Galliformes,2013_05_13_2; 2013_05_23_1; 2013_06_17_2 +184,flu_00185,2014-01-01 to 2014-01-01,H9N2 subtype,"Hong Kong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Homo sapiens,2014_01_09_9 +185,flu_00186,2008-07-25 to 2008-09-08,H5N1 subtype,"New London County, Connecticut (admin level 2), Connecticut (admin level 1); California (admin level 1); La Crosse County (admin level 2), Wisconsin (admin level 1); Idaho (admin level 1)",United States of America,Aves; Gallus gallus; Homo sapiens; Galliformes,2008_09_08_4; 2008_09_08_2; 2008_07_25_5 +186,flu_00187,2008-03-31 to 2008-05-12,H5N1 subtype,"Santa Terezinha do Progresso (admin level 2), Santa Catarina (admin level 1); South Gyeongsang Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1); Jeonju (admin level 2), North Jeolla Province (admin level 1); Daegu (admin level 1); Gimje (admin level 2), North Jeolla Province (admin level 1); Busan (admin level 1); Seongnam (admin level 2), Gyeonggi Province (admin level 1); Seoul (admin level 1)",South Korea,Aves; Gallus gallus; Anas; Galliformes,2008_05_16_3; 2008_05_02_4; 2008_04_15_3; 2008_04_18_3; 2008_07_25_1; 2008_05_09_2 +187,flu_00188,2010-03-27 to 2010-03-27,H5N1 subtype,Tulcea County (admin level 1),Romania,Aves; Gallus gallus; Galliformes,2010_04_02_3 +188,flu_00189,2010-07-21 to 2010-08-26,H5N1 subtype,Cairo Governorate (admin level 1); Dakahlia Governorate (admin level 1); Qalyubia Governorate (admin level 1),Egypt,Aves; Homo sapiens; Galliformes,2010_08_26_4; 2010_07_30_3; 2010_08_20_3; 2010_08_16_2; 2010_08_18_2 +189,flu_00190,2011-04-21 to 2011-06-07,H5N1 subtype,Prey Veng Province (admin level 1); Phnom Penh (admin level 2),Cambodia,Homo sapiens; Galliformes,2011_06_20_5; 2011_04_28_7 +190,flu_00191,2008-06-03 to 2008-06-03,H5N1 subtype,"Aomori Prefecture (admin level 1); Apriltsi Municipality (admin level 2), Lovech Province (admin level 1)",Bulgaria,Aves,2008_06_06_2 +191,flu_00192,2007-08-17 to 2007-11-01,H5N1 subtype,"Tra Vinh (admin level 2), Trà Vinh (admin level 1); Cao Bang (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Galliformes,2007_08_17_3; 2007_10_29_4; 2007_11_01_3; 2007_09_04_3 +192,flu_00193,2006-12-07 to 2007-02-02,H5N1 subtype,Hong Kong (admin level 1); Heilongjiang (admin level 1),People's Republic of China,Aves,2007_02_16_1; 2006_12_07_1 +193,flu_00194,2008-10-24 to 2008-10-24,H5N3 subtype,"Goerlitz District (admin level 2), Dresden District (admin level 1); Leipzig District (admin level 1)",Germany,Aves; Anas; Galliformes,2008_10_24_3 +194,flu_00195,2010-06-29 to 2010-08-18,H5N1 subtype,"Rajshahi Division (admin level 1); Narayanganj District (admin level 2), Dhaka Division (admin level 1)",Bangladesh,Gallus gallus; Sus scrofa; Anas; Galliformes,2010_08_18_3; 2010_06_29_2; 2010_08_16_3 +195,flu_00196,2009-08-29 to 2009-08-29,H5N1 subtype,"distretto de Chittagong (admin level 2), Chattogram Division (admin level 1)",Bangladesh,Galliformes,2009_09_25_2 +196,flu_00197,2007-05-03 to 2007-06-15,H5N1 subtype,"Dinajpur District, Bangladesh (admin level 2), Rangpur Division (admin level 1); distretto de Magura (admin level 2), Khulna Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Homo sapiens; Galliformes,2007_05_03_3; 2007_06_15_2; 2007_05_11_2 +197,flu_00198,2014-12-20 to 2015-2-2,H5N8 subtype,"Grays Harbor County (admin level 2), Washington (admin level 1); Nevada (admin level 1); Clark County (admin level 2), Kansas (admin level 1); California (admin level 1); Oregon (admin level 1); Deschutes County (admin level 2), Oregon (admin level 1); Kings County (admin level 2), New York (admin level 1); Washington (admin level 1); Baja California Sur (admin level 1); Winston County (admin level 2), Mississippi (admin level 1); Canyon County (admin level 2), Idaho (admin level 1)",United States of America,Aves; Mareca americana; Gallus gallus; Anas; Galliformes,2014_12_29_4; 2015_02_23_6; 2015_03_02_3; 2015_03_06_1; 2015_01_16_1; 2015_02_23_7; 2015_02_06_9; 2014_12_23_3 +198,flu_00199,2011-09-17 to 2011-09-17,H5N1 subtype,"Mahalapye (admin level 2), Central District (admin level 1)",Botswana,Homo sapiens,2011_11_17_8 +199,flu_00200,2016-11-07 to 2016-12-19,H5N8 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Sus scrofa; Homo sapiens; Galliformes,2016_12_29_8; 2016_12_06_16 +200,flu_00201,2013-10-28 to 2013-10-28,H7N2 subtype,New South Wales (admin level 1),Australia,Gallus gallus; Anas; Galliformes,2013_10_28_2; 2013_10_28_7 +201,flu_00202,2013-10-22 to 2013-11-15,H5N1 subtype,"Battambang Province (admin level 1); Romdoul District (admin level 2), Svay Rieng Province (admin level 1); Kampong Speu Province (admin level 1); Pailin Province (admin level 1); Pursat Province (admin level 1); Baray (distrito) (admin level 2), Kampong Thom Province (admin level 1)",Cambodia,Gallus gallus; Homo sapiens; Galliformes,2013_10_28_5; 2013_11_08_3; 2013_11_15_2; 2013_11_01_2 +202,flu_00203,2012-01-16 to 2012-03-07,H5N1 subtype,"Thanh Hoa (admin level 2), Thanh Hóa (admin level 1); Kien Giang (admin level 1); Tra Vinh (admin level 2), Trà Vinh (admin level 1); Ho Chi Minh City (admin level 1); Bac Lieu (admin level 1); Ha Tinh (admin level 1)",Vietnam,Aves; Homo sapiens; Galliformes,2012_02_29_4; 2012_03_12_6; 2012_02_22_5; 2012_02_02_16 +203,flu_00204,2014-08-12 to 2014-09-30,H5N6 subtype,"District de Thanh Xuan (admin level 2), Hanoi (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Ha Tinh (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Lao Cai (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2014_08_15_1; 2014_09_10_1; 2014_09_30_3; 2014_08_29_1 +204,flu_00205,2008-03-03 to 2008-03-16,H5N1 subtype,"Ninh Binh (admin level 2), Ninh Bình (admin level 1); Ca Mau (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Paradoxurus hermaphroditus; Galliformes,2008_03_28_3; 2008_03_14_2 +205,flu_00206,2007-09-27 to 2007-09-27,H7N3 subtype,Saskatchewan (admin level 1),Canada,Gallus gallus; Homo sapiens; Galliformes,2007_10_05_2; 2007_09_28_2 +206,flu_00207,2006-03-26 to 2006-03-26,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Gallus gallus; Homo sapiens; Galliformes,2008_06_02_3 +207,flu_00208,2010-05-28 to 2010-05-28,H5N1 subtype,"Zeeland (Noord-Brabant) (admin level 2), Landerd (admin level 1)",Netherlands,Aves; Gallus gallus; Galliformes,2010_05_28_8 +208,flu_00209,2015-11-09 to 2015-11-09,H5N8 subtype,"East Siberian Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1)",Russia,Aves; Gallus gallus; Anas; Galliformes,2015_11_09_1 +209,flu_00210,2007-06-12 to 2007-07-27,H5N1 subtype,"Thai Binh illoqarfik (admin level 2), Thái Bình (admin level 1)",Vietnam,Anas; Galliformes,2007_06_12_4; 2007_07_27_3 +210,flu_00211,2014-12-23 to 2015-01-07,H5N8 subtype,Germany (country),Germany,Aves; Galliformes,2014_12_23_2; 2015_01_08_2 +211,flu_00212,2015-03-27 to 2015-03-27,H5N2 subtype,"Pope County (Minnesota) (admin level 2), Minnesota (admin level 1); Semnan Province (admin level 1)",Iran,Aves,2015_03_27_7 +212,flu_00213,2013-02-22 to 2013-02-22,H5N1 subtype,Guanajuato (admin level 1),Mexico,Gallus gallus; Anas; Galliformes,2013_02_22_1 +213,flu_00214,2007-02-16 to 2007-02-16,H5N1 subtype,Orenburg Oblast (admin level 1),Russia,Aves,2007_02_16_4 +214,flu_00215,2014-04-22 to 2014-05-07,H5N6 subtype,Sichuan (admin level 1),People's Republic of China,Aves; Homo sapiens; Galliformes,2014_05_12_5 +215,flu_00216,2017-05-05 to 2017-05-05,H5N8 subtype,England (admin level 1),United Kingdom,Aves; Gallus gallus,2017_05_12_11 +216,flu_00217,2008-12-12 to 2008-12-12,H5N1 subtype,"Kamrup district (admin level 2), Assam (admin level 1)",India,Aves; Galliformes,2008_12_12_3 +217,flu_00218,2011-06-22 to 2011-06-22,H5N1 subtype,Lower Saxony (admin level 1); North Rhine-Westphalia (admin level 1),Germany,Aves,2011_07_06_2 +218,flu_00219,2012-12-14 to 2012-12-26,H5N1 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Galliformes,2014_10_06_1; 2012_12_14_1 +219,flu_00220,2014-10-06 to 2014-10-06,H5N1 subtype,Altai Krai (admin level 1),Russia,Aves; Gallus gallus; Anas,2014_10_06_1 +220,flu_00221,2013-06-28 to 2013-06-28,H7N7 subtype,Lower Saxony (admin level 1),Germany,Aves; Galliformes,2013_06_28_1 +221,flu_00222,2007-07-27 to 2007-07-27,H5N1 subtype,Manipur (admin level 1),India,Galliformes,2007_07_27_2 +222,flu_00223,2015-05-01 to 2015-06-12,H7N9 subtype,Hubei (admin level 1); Shanghai (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1),People's Republic of China,Homo sapiens,2015_05_01_8; 2015_05_29_7; 2015_06_12_5 +223,flu_00224,2013-05-23 to 2013-05-23,H5N1 subtype,Lower Saxony (admin level 1),Germany,Aves; Homo sapiens; Galliformes,2013_05_23_5 +224,flu_00225,2011-09-14 to 2011-09-26,H5N1 subtype,West Bengal (admin level 1); Jharkhand (admin level 1),India,Aves; Anas; Galliformes,2011_09_23_3; 2011_12_16_1 +225,flu_00226,2007-11-14 to 2007-11-14,H5N1 subtype,Riyadh Region (admin level 1),Saudi Arabia,Aves; Gallus gallus; Galliformes,2007_11_23_2 +226,flu_00227,2016-06-07 to 2016-06-19,H9N2 subtype,People's Republic of China (country),People's Republic of China,Aves; Gallus gallus; Homo sapiens,2016_06_24_6; 2016_06_07_1 +227,flu_00228,2015-06-19 to 2015-07-31,H7N7 subtype,Germany (country),Germany,Aves; Gallus gallus; Homo sapiens,2015_07_31_1; 2015_06_19_1 +228,flu_00229,2007-11-29 to 2007-11-29,H5N1 subtype,"Suffolk County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves,2007_12_07_1 +229,flu_00230,2016-01-22 to 2016-01-22,H5N2 subtype,Kaohsiung City (admin level 1),Taiwan,Aves; Galliformes,2016_01_22_5 +230,flu_00231,2008-03-07 to 2008-03-07,H5N1 subtype,Basra Vilayet (admin level 1),Iraq,Galliformes,2008_03_07_3 +231,flu_00232,2012-01-18 to 2012-01-18,H5N1 subtype,Banteay Meanchey Province (admin level 1),Cambodia,Gallus gallus; Homo sapiens; Galliformes,2012_02_02_14 +232,flu_00233,2006-12-15 to 2006-12-15,H5N1 subtype,Little India (admin level 2),Singapore,Aves; Columbidae; Anser; Passeridae,2006_12_15_1 +233,flu_00234,2016-10-22 to 2016-11-4,H5N8 subtype,"Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Delhi (admin level 1); Alappuzha (admin level 2), Kerala (admin level 1); Punjab (admin level 1)",India,Aves; Gallus gallus; Anas; Ciconiidae; Galliformes,2016_11_15_12; 2016_11_07_3 +234,flu_00235,2011-09-23 to 2011-09-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Homo sapiens; Galliformes,2011_09_23_1 +235,flu_00236,2015-03-31 to 2015-03-31,H5N1 subtype,"Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Homo sapiens,2015_04_03_9 +236,flu_00237,2010-06-28 to 2010-07-18,H5N1 subtype,"Thai Nguyen (admin level 2), Thái Nguyên (admin level 1); Gia Lai (admin level 1)",Vietnam,Aves; Anas; Galliformes,2010_08_20_2; 2010_07_02_3 +237,flu_00238,2009-10-07 to 2009-11-16,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Nan (admin level 1)",Thailand,Aves; Anas; Galliformes,2009_11_20_6 +238,flu_00239,2015-01-08 to 2015-01-30,H5N1 subtype,Nigeria (country),Nigeria,Aves,2015_01_30_3; 2015_01_23_6 +239,flu_00240,2011-12-13 to 2011-12-16,H5N1 subtype,"Katchiungo (admin level 2), Huambo Province (admin level 1); Hong Kong (admin level 1)",Angola,Aves; Chroicocephalus ridibundus,2011_12_22_1 +240,flu_00241,2007-04-06 to 2007-04-06,H5N1 subtype,Kampong Cham Province (admin level 1),Cambodia,Aves; Gallus gallus; Anas; Homo sapiens,2007_04_23_2 +241,flu_00242,2017-03-06 to 2017-03-06,H5N8 subtype,Vienna (admin level 1),Austria,Pelecanidae,2017_03_22_1 +242,flu_00243,2012-11-15 to 2012-11-15,H5N1 subtype,New South Wales (admin level 1),Australia,Aves; Gallus gallus; Homo sapiens,2012_11_15_3 +243,flu_00244,2016-11-21 to 2016-11-23,H5N1 subtype,Bauchi State (admin level 1); Kano State (admin level 1),Nigeria,Gallus gallus; Anas,2016_12_06_15 +244,flu_00245,2008-10-15 to 2008-10-15,H5N1 subtype,"Lower Saxony (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1)",Germany,Aves; Galliformes,2008_10_16_2 +245,flu_00246,2009-11-06 to 2009-11-06,H1N1 subtype,Hong Kong (admin level 1),People's Republic of China,Sus scrofa,2009_11_06_4 +246,flu_00247,2008-08-27 to 2008-09-18,H5N1 subtype,Luang Prabang Province (admin level 1),Laos,Aves; Anas; Homo sapiens; Galliformes,2008_09_11_2; 2008_09_18_2 +247,flu_00248,2009-08-06 to 2009-08-06,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves; Anser,2009_08_28_1 +248,flu_00249,2008-03-07 to 2008-03-07,H5N1 subtype,Phatthalung (admin level 1),Thailand,Anas; Galliformes,2008_03_07_4 +249,flu_00250,2017-01-03 to 2017-02-07,H5N8 subtype,Wales (admin level 1),United Kingdom,Aves; Anas platyrhynchos; Gallus gallus; Anas; Galliformes,2017_02_07_14; 2017_01_10_20 +250,flu_00251,2016-11-18 to 2017-01-10,H5N6 subtype,Hunan (admin level 1); Hong Kong (admin level 1),People's Republic of China,Aves; Gallus gallus; Homo sapiens; Galliformes,2016_12_06_20; 2017_01_10_10; 2016_12_01_11 +251,flu_00252,2010-12-09 to 2010-12-09,H5N1 subtype,Samukh District (admin level 1),Azerbaijan,Aves; Galliformes,2010_12_09_2 +252,flu_00253,2015-06-26 to 2015-06-26,H5N1 subtype,Sohag Governorate (admin level 1),Egypt,Homo sapiens,2015_06_26_5 +253,flu_00254,2015-11-18 to 2015-11-18,Influenza A virus,Oregon (admin level 1),United States of America,Aves; Metazoa; Galliformes,2015_12_16_1 +254,flu_00255,2013-05-31 to 2013-05-31,Influenza A virus,County of Viborg and Nyslott (admin level 1),Swedish Empire,Aves; Anas; Ciconiidae; Galliformes,2013_06_07_2 +255,flu_00256,2016-10-21 to 2016-10-21,H5N1 subtype,"Gwalior (admin level 2), Madhya Pradesh (admin level 1); South Delhi (admin level 2), Delhi (admin level 1); Delhi (admin level 1)",India,Aves; Ciconiidae,2016_10_21_2 +256,flu_00257,2016-12-26 to 2017-02-07,H5N1 subtype,Odisha (admin level 1); Andaman and Nicobar Islands (admin level 1),India,Aves; Gallus gallus; Anas; Galliformes,2017_01_10_11; 2017_01_13_4 +257,flu_00258,2014-12-06 to 2014-12-06,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Homo sapiens; Galliformes,2014_02_07_4 +258,flu_00259,2016-09-09 to 2016-10-17,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves; Homo sapiens,2016_10_17_2; 2016_09_09_1 +259,flu_00260,2014-07-25 to 2014-07-25,H5N8 subtype,"Hampyeong County (admin level 2), South Jeolla Province (admin level 1); Hampyeong (admin level 2), South Jeolla Province (admin level 1)",South Korea,Gallus gallus; Anas; Galliformes,2014_08_01_1 +260,flu_00261,2006-12-06 to 2006-12-20,H5N1 subtype,Ca Mau (admin level 1); Bac Lieu (admin level 1),Vietnam,Aves; Gallus gallus; Anas; Galliformes,2006_12_22_2; 2007_01_08_3 +261,flu_00262,2007-03-23 to 2007-03-23,H5N1 subtype,Punjab (admin level 1),Pakistan,Corvus; Gallus gallus,2007_03_23_2 +262,flu_00263,2017-02-20 to 2017-02-20,H5N8 subtype,Catalonia (admin level 1),Spain,Ciconia ciconia; Anser; Aves; Galliformes,2017_03_03_1 +263,flu_00264,2007-01-04 to 2007-02-07,H5N1 subtype,Kumamoto Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas; Galliformes,2007_03_23_1; 2007_02_07_2 +264,flu_00265,2011-11-17 to 2011-11-17,H5N1 subtype,Battambang Province (admin level 1),Cambodia,Gallus gallus; Anser; Anas; Galliformes,2011_11_17_3 +265,flu_00266,2010-05-17 to 2010-05-28,H5N1 subtype,"West Bank (admin level 1); Tulkarm Governorate (admin level 2), West Bank (admin level 1)",Israel,Aves; Gallus gallus; Galliformes,2010_05_28_6; 2010_05_17_4 +266,flu_00267,2008-01-10 to 2008-01-10,H5N1 subtype,England (admin level 1),United Kingdom,Anas; Homo sapiens; Cygnus,2008_01_10_2 +267,flu_00268,2009-03-04 to 2009-03-04,H7N6 subtype,Aichi Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2009_03_10_3 +268,flu_00269,2014-01-02 to 2014-02-18,H5N1 subtype,Hubei (admin level 1),People's Republic of China,Aves; Gallus gallus; Galliformes,2014_02_19_8; 2014_01_09_2; 2014_01_22_3 +269,flu_00270,2007-09-05 to 2007-09-05,H5N1 subtype,"Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1)",People's Republic of China,Aves; Anas; Galliformes,2007_09_21_2 +270,flu_00271,2015-12-18 to 2016-02-08,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Aves; Gallus gallus; Anas; Galliformes,2016_01_08_5; 2015_12_18_4; 2016_02_08_6 +271,flu_00272,2016-07-19 to 2016-07-19,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Anser; Gallus gallus,2016_07_19_4 +272,flu_00273,2011-08-14 to 2011-08-14,H5N1 subtype,Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Anas; Galliformes,2011_08_19_1 +273,flu_00274,2009-12-3 to 2009-12-3,H1N1 subtype,Sicily (admin level 1),Italy,Sus scrofa,2010_01_20_7 +274,flu_00275,2011-11-17 to 2011-11-17,H5N1 subtype,Maine (admin level 1),United States of America,Aves,2011_11_17_1 +275,flu_00276,2016-04-20 to 2016-06-20,H5N2 subtype,Taichung (admin level 1); Taipei (admin level 1),Taiwan,Gallus gallus; Galliformes,2016_04_20_3; 2016_05_20_6; 2016_06_24_5 +276,flu_00277,2008-04-08 to 2008-07-25,H5N1 subtype,"Primorsky Krai (admin level 1); Perm Krai (admin level 1); Republic of Crimea (admin level 1); Altai Krai (admin level 1); Ural Oblast (admin level 2), Russian Republic (admin level 1)",Russia,Aves; Gallus gallus; Anas; Galliformes,2008_06_02_1; 2008_07_25_2; 2008_04_18_2 +277,flu_00278,2013-02-22 to 2013-02-22,H5N1 subtype,Neubrandenburg District (admin level 1),East Germany,Gallus gallus; Galliformes,2013_02_22_2 +278,flu_00279,2008-09-11 to 2008-09-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Aves; Gallus gallus; Galliformes,2008_09_11_3 +279,flu_00280,2016-11-15 to 2016-12-20,H5N6 subtype,Akita Prefecture (admin level 1),Japan,Aves; Cygnus atratus; Homo sapiens,2016_12_20_3; 2016_12_01_3 +280,flu_00281,2013-07-15 to 2013-07-15,H7N7 subtype,Saint George Parish (admin level 1),Dominica,Aves; Homo sapiens; Galliformes,2013_07_15_2 +281,flu_00282,2013-04-19 to 2013-04-26,H5N1 subtype,Cairo Governorate (admin level 1),Egypt,Gallus gallus; Anas; Homo sapiens; Galliformes,2013_04_19_3; 2014_02_19_9 +282,flu_00283,2015-05-22 to 2015-07-08,H5N1 subtype,Istanbul Province (admin level 1),Turkey,Aves; Metazoa; Galliformes,2015_07_08_1; 2015_05_22_4 +283,flu_00284,2014-12-29 to 2014-12-29,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Vinh Long City (admin level 2), Vĩnh Long (admin level 1)",Vietnam,Galliformes,2014_12_29_7 +284,flu_00285,2015-11-09 to 2015-11-09,H5N1 subtype,South Jeolla Province (admin level 1),South Korea,Aves,2015_11_09_3 +285,flu_00286,2011-03-16 to 2011-03-29,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus; Galliformes,2011_03_29_6 +286,flu_00287,2014-02-06 to 2014-02-06,H5N1 subtype,Odisha (admin level 1); Orissa (admin level 1),India,Corvus; Corvus splendens; Galliformes,2014_03_07_9 +287,flu_00288,2013-03-01 to 2013-03-18,H5N1 subtype,"Odisha (admin level 1); Lakhimpurin piirikunta (admin level 2), Assam (admin level 1); distretto di Madhepura (admin level 2), Bihar (admin level 1); Purnia (admin level 2), Bihar (admin level 1); Khordha (admin level 2), Odisha (admin level 1); Ganjam (admin level 2), Odisha (admin level 1)",India,Aves; Gallus gallus; Galliformes,2013_03_01_1; 2013_03_18_2 +288,flu_00289,2016-04-30 to 2016-04-30,H5N1 subtype,"Missouri (admin level 1); Jasper County (admin level 2), Illinois (admin level 1)",United States of America,Aves,2016_05_06_5 +289,flu_00290,2007-08-11 to 2007-08-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Aves; Gallus gallus; Galliformes,2007_08_17_2 +290,flu_00291,2014-08-29 to 2014-09-30,Influenza A virus,"Berks County (admin level 2), Pennsylvania (admin level 1)",United States of America,Aves; Anas; Homo sapiens,2014_09_30_1; 2014_08_29_2 +291,flu_00292,2017-03-22 to 2017-03-22,H5N1 subtype,"Tây Ninh (admin level 2), Tay Ninh Province (admin level 1)",Vietnam,Aves; Galliformes,2017_03_22_13 +292,flu_00293,2016-11-12 to 2016-11-12,H5N8 subtype,Åland Islands (admin level 1),Finland,Aves; Anas; Galliformes,2016_12_06_2 +293,flu_00294,2008-01-04 to 2008-01-04,H5N1 subtype,"Dangbo (admin level 2), Ouémé Department (admin level 1)",Benin,Gallus gallus; Anas,2008_01_04_4 +294,flu_00295,2017-05-22 to 2017-05-22,H5N5 subtype,Netherlands (country),Netherlands,Aves; Anser; Homo sapiens,2017_05_30_1; 2017_06_06_1 +295,flu_00296,2015-04-02 to 2015-04-02,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves; Homo sapiens; Galliformes,2015_04_03_7 +296,flu_00297,2010-11-16 to 2010-11-22,H5N1 subtype,"Nam Dinh (admin level 2), Nam Định (admin level 1)",Vietnam,Aves; Anas; Galliformes,2010_12_03_4 +297,flu_00298,2017-11-22 to 2017-11-22,H7N9 subtype,Jiangsu (admin level 1); Fujian (admin level 1); Zhejiang (admin level 1),People's Republic of China,Homo sapiens; Galliformes,2017_01_10_21 +298,flu_00299,2016-01-11 to 2016-01-11,H5N1 subtype,Scotland (admin level 1),United Kingdom,Aves; Gallus gallus; Galliformes,2016_01_15_4 +299,flu_00300,2015-04-03 to 2015-04-03,H5N6 subtype,Jiangsu (admin level 1),People's Republic of China,Aves; Anser,2015_04_03_5 +300,flu_00301,2016-05-10 to 2016-05-10,H5N1 subtype,"distretto di Chhouk (admin level 2), Kampot Province (admin level 1); Kampot Province (admin level 1)",Cambodia,Gallus gallus; Homo sapiens,2016_05_20_5 +301,flu_00302,2011-05-26 to 2011-05-26,H5N8 subtype,"Gochang (admin level 2), North Jeolla Province (admin level 1)",South Korea,Aves; Galliformes,2014_01_22_4 +302,flu_00303,2017-03-08 to 2017-03-22,H7N9 subtype,"Giles County (admin level 2), Virginia (admin level 1); Tennessee (admin level 1)",United States of America,Aves; Gallus gallus; Homo sapiens; Galliformes,2017_03_22_11; 2017_03_08_13; 2017_03_22_10 +303,flu_00304,2015-01-16 to 2015-01-16,H5N8 subtype,"Fujian Province, Republic of China (admin level 1)",Taiwan,Anser; Homo sapiens; Galliformes; Aves; Anas; Gallus gallus,2015_01_16_3 +304,flu_00305,2007-05-30 to 2007-05-30,H5N1 subtype,Zamfara State (admin level 1),Nigeria,Aves; Anas; Galliformes,2007_05_30_4 +305,flu_00306,2016-04-13 to 2016-04-13,H5N9 subtype,Veliko Tarnovo Province (admin level 1),Bulgaria,Gallus gallus; Anas; Homo sapiens; Galliformes,2016_04_26_2 +306,flu_00307,2011-04-14 to 2011-04-14,H5N1 subtype,Sükhbaatar Province (admin level 1),Mongolia,Aves; Cygnus cygnus,2011_04_28_1 +307,flu_00308,2012-06-29 to 2012-07-03,Influenza A virus,"Karawang (admin level 2), West Java Province (admin level 1)",Indonesia,Gallus gallus; Homo sapiens,2012_07_24_4 +308,flu_00309,2015-04-01 to 2015-04-01,H5N1 subtype,"Sanguié (admin level 2), Centre-Ouest Region (admin level 1); Kadiogo (admin level 2), Centre Region, Burkina Faso (admin level 1)",Burkina Faso,Galliformes,2015_04_03_4 +309,flu_00310,2014-10-24 to 2014-10-24,H5N6 subtype,Heilongjiang (admin level 1),People's Republic of China,Aves; Gallus gallus; Anas; Galliformes,2014_11_03_7 +310,flu_00311,2015-11-13 to 2015-11-13,H5N2 subtype,Emilia-Romagna (admin level 1),Italy,Aves; Anas,2015_11_13_1 +311,flu_00312,2009-12-11 to 2009-12-11,H9N2 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2010_01_12_7 +312,flu_00313,2017-01-05 to 2017-01-18,Influenza A virus,Chile (country),Chile,Aves; Phasianidae,2017_01_10_9; 2017_01_23_7 +313,flu_00314,2015-03-02 to 2015-03-02,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus,2015_03_02_5 +314,flu_00315,2008-07-25 to 2008-07-25,H5N1 subtype,"Republic of Crimea (admin level 1); Azov-Black Sea Krai (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1)",Ukraine,Aves,2008_07_25_2 +315,flu_00316,2017-01-10 to 2017-01-10,Influenza A virus,Stara Zagora Province (admin level 1),Bulgaria,Aves,2017_01_10_8 +316,flu_00317,2015-03-25 to 2015-03-30,H5N1 subtype,Tulcea County (admin level 1),Romania,Aves; Pelecanidae,2015_04_03_1 +317,flu_00318,2016-04-20 to 2016-04-20,H7N3 subtype,Jalisco (admin level 1); Veracruz (admin level 1); Puebla (admin level 1),Mexico,Gallus gallus; Pavo cristatus,2016_04_20_1 +318,flu_00319,2016-01-15 to 2016-01-15,H5N2 subtype,"Haute-Garonne (admin level 2), Languedoc-Roussillon-Midi-Pyrénées (admin level 1)",France,Gallus gallus; Anas; Galliformes,2016_01_15_2 +319,flu_00320,2012-03-19 to 2012-03-25,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Phasianidae; Homo sapiens; Galliformes,2012_04_12_5 +320,flu_00321,2011-10-18 to 2011-10-18,H5N1 subtype,Mazandaran Province (admin level 1),Iran,Aves; Galliformes,2011_10_18_2 +321,flu_00322,2017-01-23 to 2017-03-08,Influenza A virus,"Masaka (admin level 2), Central Region (admin level 1); Budaka (admin level 2), Eastern Region (admin level 1)",Uganda,Aves; Gallus gallus; Anas,2017_01_23_5; 2017_03_08_4 +322,flu_00323,2015-11-13 to 2015-11-13,Influenza A virus,Eastern Cape (admin level 1),South Africa,Aves,2015_11_13_2 +323,flu_00324,2016-12-27 to 2017-01-05,H5N8 subtype,New Taipei City (admin level 1),Taiwan,Gallus gallus,2017_01_10_19 +324,flu_00325,2010-03-08 to 2010-03-08,H5N1 subtype,"Onderbanken (admin level 2), Limburg (admin level 1)",Netherlands,Aves; Gallus gallus; Homo sapiens; Galliformes,2010_03_26_2 +325,flu_00326,2008-11-07 to 2008-11-07,H5N1 subtype,Pangasinan (admin level 1),Philippines,Aves,2008_11_07_1 +326,flu_00327,2006-12-10 to 2006-12-10,H5N1 subtype,Anhui Province (admin level 1),China,Gallus gallus; Homo sapiens; Galliformes,2007_01_18_4 +327,flu_00328,2013-04-19 to 2013-04-19,H5N1 subtype,"England (admin level 1); Suffolk County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves; Galliformes,2013_04_19_2 +328,flu_00329,2017-05-12 to 2017-05-12,H5N8 subtype,Friuli–Venezia Giulia (admin level 1),Italy,Aves,2017_05_12_3 +329,flu_00330,2007-09-28 to 2007-09-28,H5N1 subtype,"Taphan Hin (admin level 2), Phichit (admin level 1)",Thailand,Gallus gallus; Galliformes,2007_09_28_4 +330,flu_00331,2011-03-29 to 2011-03-29,H5N1 subtype,Tasmania (admin level 1),Australia,Gallus gallus; Anas; Galliformes,2011_03_29_2 +331,flu_00332,2014-10-24 to 2014-10-24,H5N2 subtype,"Suihua (admin level 2), Heilongjiang (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anas,2014_11_03_5 +332,flu_00333,2016-01-08 to 2016-01-11,Influenza A virus,Taichung (admin level 1),Taiwan,Passeridae,2016_01_15_1 diff --git a/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-30.csv b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-30.csv new file mode 100644 index 0000000..40e7a22 --- /dev/null +++ b/data/entity_resolver_output/er-out-epidemic-tuples-2018-11-30.csv @@ -0,0 +1,297 @@ +,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports +0,flu_00001,2011-12-06 to 2012-03-21,H5N1 subtype,"distretto di Siwan (admin level 2), Bihar (admin level 1); Kolkata destrict (admin level 2), West Bengal (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Lalitpur district (admin level 2), Uttar Pradesh (admin level 1); Mayurbhanj district (admin level 2), Odisha (admin level 1); Khordha district (admin level 2), Odisha (admin level 1); Punjab (admin level 1); Jharkhand (admin level 1); Tripura (admin level 1); Khurdan piirikunta (admin level 2), Odisha (admin level 1); Orissa (admin level 1); Visakhapatnam district (admin level 2), Andhra Pradesh (admin level 1)",India,Aves; Corvus macrorhynchos; Corvus; Galliformes; Gallus gallus; Anas,2012_04_09_2; 2012_02_02_13; 2012_02_02_1; 2012_02_02_3; 2012_03_23_2; 2011_12_06_1; 2012_02_22_1; 2012_03_23_7; 2012_02_02_4; 2012_02_22_3; 2012_02_02_10 +1,flu_00002,2007-06-21 to 2007-07-17,H5N1 subtype,Central Bohemian Region (admin level 1); South Bohemia Region (admin level 1); South Moravian Region (admin level 1),Czech Republic,Phasianidae; Aves; Galliformes,2007_07_17_2; 2007_06_22_4; 2007_07_03_2 +2,flu_00003,2008-08-01 to 2008-08-15,H5N1 subtype,"Mayo-Kebbi Ouest Region (admin level 1); Katsina State (admin level 1); Juneau, Alaska (admin level 2), Alaska (admin level 1); Kebbi State (admin level 1); Kano State (admin level 1); Gombe State (admin level 1)",Nigeria,Aves; Gallus gallus; Anas platyrhynchos; Galliformes,2008_08_15_2; 2008_08_01_4 +3,flu_00004,2014-11-18 to 2015-01-23,H5N8 subtype,Kumamoto Prefecture (admin level 1); Miyazaki Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2014_11_18_1; 2014_12_29_5; 2014_12_09_1; 2015_01_23_4; 2014_12_19_4 +4,flu_00005,2016-11-18 to 2017-05-31,H7N9 subtype,"Rizhao (admin level 2), Shandong (admin level 1); Jiangsu (admin level 1); Fujian (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Guangdong (admin level 1); Fuzhou (admin level 2), Fujian (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Henan (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1); Hong Kong (admin level 1); Hubei (admin level 1); Sichuan (admin level 1); Huzhou (admin level 2), Zhejiang (admin level 1); Zhejiang (admin level 1); Suzhou (admin level 2), Jiangsu (admin level 1); Wuhan (admin level 2), Hubei (admin level 1); Tibet (admin level 1); Suzhou (admin level 2), Anhui (admin level 1); Nantong (admin level 2), Jiangsu (admin level 1); Guizhou (admin level 1); Hengyang (admin level 2), Hunan (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Homo sapiens,2016_11_18_9; 2017_05_30_3; 2017_05_12_13; 2016_12_29_13; 2017_01_10_21; 2017_01_23_10; 2017_01_13_7; 2017_06_06_2; 2017_03_03_2; 2017_01_13_8; 2016_12_20_17; 2017_03_03_10; 2017_05_30_10; 2017_01_10_22; 2017_02_07_17; 2016_12_29_14; 2017_03_22_15; 2017_01_23_9 +5,flu_00006,2011-02-28 to 2011-09-15,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Distretto di Tu Son (admin level 2), Bac Ninh (admin level 1); Bac Kan (admin level 1); Distretto di Binh Minh (admin level 2), Vĩnh Long Province (admin level 1); Gia Nghia (admin level 2), Đắk Nông (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Ha Nam (admin level 1); Tan Binh (admin level 2), Ho Chi Minh City (admin level 1); Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1)",Vietnam,Aves; Gallus gallus; Galliformes; Anas,2011_09_15_3; 2011_05_25_2; 2011_09_15_8; 2011_06_10_1; 2011_02_28_4; 2011_04_28_5; 2011_08_02_2; 2011_04_05_3 +6,flu_00007,2007-09-05 to 2008-03-14,H5N1 subtype,"Turpan (admin level 2), Xinjiang (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Hong Kong (admin level 1); Guizhou (admin level 1); Cheung Prey District (admin level 2), Kampong Cham Province (admin level 1)",People's Republic of China,Aves; Egretta garzetta; Galliformes; Homo sapiens; Gallus gallus; Anas,2008_03_07_1; 2007_11_30_1; 2008_03_14_1; 2008_02_08_1; 2008_02_20_1; 2007_12_18_1; 2008_03_03_3; 2008_01_10_4; 2008_03_27_3; 2007_09_21_2 +7,flu_00008,2007-03-20 to 2007-03-23,H5N1 subtype,Kunar (admin level 1); Kabul Province (admin level 1); Nangarhar (admin level 1),Afghanistan,Aves; Galliformes,2007_03_20_3; 2007_04_02_2 +8,flu_00009,2016-08-19 to 2016-08-25,H9N2 subtype,Jiangxi (admin level 1); Yunnan (admin level 1),People's Republic of China,Homo sapiens,2016_09_09_5 +9,flu_00010,2011-11-10 to 2012-01-03,H5N1 subtype,Gharbia Governorate (admin level 1); Dakahlia Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2012_02_02_5; 2011_12_06_6 +10,flu_00011,2008-12-25 to 2009-07-25,H5N1 subtype,"Vinh Long (admin level 2), Vĩnh Long (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1); Bac Lieu (admin level 1); Bac Ninh (admin level 1); Hau Giang (admin level 1); Dong Thap Province (admin level 1); Thanh Hoa (admin level 2), Thanh Hóa (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Long Xuyen (admin level 2), An Giang (admin level 1); Ha Tinh (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Ca Mau (admin level 1)",Vietnam,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2009_03_02_8; 2009_02_06_5; 2009_05_22_2; 2009_06_29_3; 2009_05_15_2; 2009_03_23_5; 2009_02_13_6; 2009_02_06_10; 2009_05_05_3; 2009_01_14_10; 2009_05_01_5; 2009_03_30_6; 2009_08_03_5 +11,flu_00012,2009-08-28 to 2009-09-25,H5N1 subtype,Damietta Governorate (admin level 1); Alexandria Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2009_09_25_3; 2009_09_08_3 +12,flu_00013,2008-10-15 to 2009-05-05,H5N1 subtype,"Lhasa (admin level 2), Tibet (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Yulin (admin level 2), Shaanxi (admin level 1); Hong Kong (admin level 1); Beijing (admin level 1); Hunan (admin level 1); Huaihua (admin level 2), Hunan (admin level 1); Xinjiang (admin level 1); Jiangsu Province (admin level 1); Qinghai (admin level 1); Guizhou (admin level 1); Saint Thomas Lowland Parish (admin level 1)",People's Republic of China,Aves; Anser; Galliformes; Homo sapiens; Passeridae; Gallus gallus; Anas,2009_01_14_4; 2009_02_13_3; 2009_01_30_5; 2009_01_14_9; 2008_12_12_2; 2009_03_02_1; 2008_10_24_1; 2009_03_17_4; 2009_05_11_2; 2009_02_06_3; 2009_01_21_4; 2009_05_22_1; 2009_02_23_2; 2009_04_28_2; 2009_02_06_8; 2009_03_10_1; 2009_01_14_8; 2009_01_14_1 +13,flu_00014,2008-10-09 to 2008-10-09,H5N1 subtype,"Yesan (admin level 2), South Chungcheong Province (admin level 1); Seoul (admin level 1)",South Korea,Aves; Galliformes; Anas,2008_10_09_2 +14,flu_00015,2011-12-12 to 2012-09-11,H5N1 subtype,"Tibet (admin level 1); Stueng Hav District (admin level 2), Sihanoukville (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Sangdang-gu (admin level 2), Cheongju (admin level 1); Hong Kong (admin level 1); Guangzhou (admin level 2), Guangdong (admin level 1); Ningxia Hui Autonomous Region (admin level 1)",People's Republic of China,Copsychus saularis; Aves; Chroicocephalus ridibundus; Lonchura punctulata; Columbidae; Erithacus rubecula; Corvus splendens; Galliformes; Anas platyrhynchos; Homo sapiens; Cepora; Gallus gallus; Falco peregrinus calidus; Anas,2012_06_28_1; 2012_01_06_5; 2012_09_20_1; 2012_09_07_1; 2012_04_09_1; 2011_12_22_5; 2012_02_29_1; 2012_06_11_6; 2012_04_12_1; 2012_07_24_1; 2011_12_16_4; 2012_03_12_1; 2012_01_06_1; 2012_03_06_1; 2012_03_23_1; 2012_02_22_2; 2012_04_25_2; 2012_02_02_9 +15,flu_00016,2009-11-09 to 2011-07-11,H5N1 subtype,"Tabanan Regency (admin level 2), Bali (admin level 1); Luwu Utara (admin level 2), South Sulawesi (admin level 1); West Sumatra (admin level 1); Boyolali (admin level 2), Central Java Province (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Riau Province (admin level 1); Gunungkidul (admin level 2), Special Region of Yogyakarta (admin level 1); Luwu Timur (admin level 2), South Sulawesi (admin level 1); Banten Province (admin level 1); Banda Aceh (admin level 2), Aceh (admin level 1); Jakarta (admin level 1); North Sulawesi Province (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Palopo (admin level 2), South Sulawesi (admin level 1); Tebo (admin level 2), Jambi Province (admin level 1); Pontianak, Indonesia (admin level 2), Kalimantan Barat (admin level 1); Pekanbaru (admin level 2), Riau Province (admin level 1); Jambi Province (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Aceh (admin level 1); Barru (admin level 2), South Sulawesi (admin level 1); South Tangerang (admin level 2), Banten Province (admin level 1); Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); Padang Lawas Utara (admin level 2), North Sumatra Province (admin level 1); Desa Bangli (admin level 2), Bali (admin level 1); Kabupaten Karawang (admin level 2), West Java Province (admin level 1); Bengkulu Province (admin level 1); Kotamobagu (admin level 2), North Sulawesi Province (admin level 1); South Sulawesi (admin level 1); Bangka Tengah (admin level 2), Bangka Belitung Islands (admin level 1); Kobarid Municipality (admin level 1); Kabupaten Pinrang (admin level 2), South Sulawesi (admin level 1); Central Java Province (admin level 1); North Padang Lawas Regency (admin level 2), North Sumatra Province (admin level 1); Kecamatan Karangasem (admin level 2), Bali (admin level 1); Lampung Province (admin level 1); Cirebon (admin level 2), West Java Province (admin level 1); kabupaten de Bandung occidental (admin level 2), West Java Province (admin level 1); Soppeng (admin level 2), South Sulawesi (admin level 1); Bolaang Mongondow Utara (admin level 2), North Sulawesi Province (admin level 1); Bulukumba (admin level 2), South Sulawesi (admin level 1); Surabaya (admin level 2), East Java (admin level 1); Bali (admin level 1); Padangsidimpuan (admin level 2), North Sumatra Province (admin level 1); Pontianak (admin level 2), Kalimantan Barat (admin level 1); Samarinda (admin level 2), East Kalimantan (admin level 1); Kalimantan Selatan (admin level 1); West Java Province (admin level 1); Gorontalo Province (admin level 1); Yogyakarta (admin level 1); Riau Islands Province (admin level 1); East Java (admin level 1); Kepulauan Riau (admin level 1)",Indonesia,Phasianidae; Aves; Columbidae; Sus scrofa; Galliformes; Homo sapiens; Gallus gallus; Anas,2011_03_29_4; 2011_03_15_10; 2010_03_01_5; 2010_10_01_2; 2010_10_27_1; 2011_05_31_1; 2010_12_09_6; 2010_08_16_4; 2010_01_20_5; 2010_08_18_4; 2011_02_28_3; 2010_12_17_2; 2011_02_22_5; 2010_08_18_6; 2011_04_12_2; 2010_10_01_1; 2011_04_12_5; 2010_12_03_7; 2010_05_28_3; 2010_01_27_4; 2010_02_19_4; 2010_08_06_2; 2010_10_08_1; 2010_05_17_2; 2011_01_14_4; 2011_01_28_4; 2011_01_28_7; 2010_07_02_4; 2010_01_12_8; 2011_02_11_9; 2011_03_07_4; 2011_06_10_3; 2011_01_24_3; 2010_07_23_1; 2010_02_03_2; 2010_05_10_3; 2011_06_20_1; 2010_08_20_4; 2010_08_16_6; 2011_05_18_5; 2010_05_04_3; 2009_11_20_2; 2010_04_26_3; 2010_10_15_3; 2010_08_26_2; 2010_02_03_6; 2011_03_29_7; 2010_06_29_3; 2010_10_08_3; 2011_04_28_2; 2011_07_11_2; 2011_04_05_1; 2010_08_20_1; 2011_04_28_8; 2010_08_06_1; 2010_03_19_1; 2010_06_07_5; 2010_03_26_4; 2010_09_09_2; 2010_07_23_2; 2011_03_22_6; 2010_09_24_1 +16,flu_00017,2009-10-26 to 2009-10-26,H5N1 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2009_11_06_3 +17,flu_00018,2015-06-26 to 2015-07-24,H5N1 subtype,"Qiannanin buyien ja miaojen autonominen prefektuuri (admin level 2), Guizhou (admin level 1); Tibet Autonomous Region (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1); Inner Mongolia (admin level 1)",People's Republic of China,Aves; Chroicocephalus ridibundus; Podicipedidae; Anser; Cepora; Gallus gallus; Anas,2015_07_24_1; 2015_06_26_1 +18,flu_00019,2007-12-19 to 2008-05-23,H5N1 subtype,"West Bengal (admin level 1); Dhaka Division (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Tripura (admin level 1); Sipahijala district (admin level 2), Tripura (admin level 1); Malda (admin level 2), West Bengal (admin level 1); Hamirpur district (admin level 2), Uttar Pradesh (admin level 1)",India,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2008_01_04_3; 2008_03_14_4; 2008_02_01_3; 2008_04_30_2; 2008_03_03_4; 2008_05_02_2; 2008_05_23_2; 2008_05_16_2; 2008_03_27_4; 2008_03_28_2; 2008_02_08_5; 2008_04_15_2 +19,flu_00020,2016-01-29 to 2016-04-11,H5N1 subtype,South Sulawesi (admin level 1),Indonesia,Aves; Gallus gallus; Anas,2016_01_29_1; 2016_03_21_3; 2016_04_11_2 +20,flu_00021,2015-07-10 to 2016-07-05,H5N1 subtype,Plateau State (admin level 1); Bayelsa State (admin level 1); Kano State (admin level 1); Kaduna State (admin level 1); Benue-Plateau State (admin level 1); Lagos (admin level 1),Nigeria,Aves; Gallus gallus; Anas; Homo sapiens,2015_08_07_5; 2015_11_20_3; 2016_01_15_3; 2016_01_22_4; 2016_02_22_4; 2016_07_05_3; 2015_10_05_3; 2015_09_30_2; 2015_08_24_5; 2015_08_28_2; 2016_01_29_3; 2016_03_14_5; 2015_07_20_3; 2016_04_11_3; 2016_06_10_3; 2015_07_10_2; 2015_07_31_4; 2015_09_18_3; 2016_01_08_3 +21,flu_00022,2014-12-16 to 2015-07-31,H5N2 subtype,"Blue Earth County (admin level 2), Minnesota (admin level 1); Clallam County (admin level 2), Washington (admin level 1); Stearns County (admin level 2), Minnesota (admin level 1); United States Virgin Islands (admin level 1); Oxford County (admin level 2), Maine (admin level 1); Renville County (admin level 2), North Dakota (admin level 1); Hamilton County, Iowa (admin level 2), Iowa (admin level 1); Whatcom County (admin level 2), Washington (admin level 1); Buena Vista County (admin level 2), Iowa (admin level 1); Pipestone County (admin level 2), Minnesota (admin level 1); Nobles County (admin level 2), Minnesota (admin level 1); Kandiyohi County (admin level 2), Minnesota (admin level 1); Sioux County, Iowa (admin level 2), Iowa (admin level 1); Dickey County (admin level 2), North Dakota (admin level 1); Michigan (admin level 1); Wright County (admin level 2), Minnesota (admin level 1); Minnesota (admin level 1); South Dakota (admin level 1); Leavenworth County (admin level 2), Kansas (admin level 1); Barron County (admin level 2), Wisconsin (admin level 1); Calhoun County (admin level 2), Iowa (admin level 1); Jasper County (admin level 2), Texas (admin level 1); Meeker County (admin level 2), Minnesota (admin level 1); Wisconsin (admin level 1); Renville County (admin level 2), Minnesota (admin level 1); McCracken County (admin level 2), Kentucky (admin level 1); Osceola County (admin level 2), Iowa (admin level 1); comté de Elizabeth City (admin level 2), Virginia (admin level 1); Jefferson County, Iowa (admin level 2), Iowa (admin level 1); Hamilton County (admin level 2), Iowa (admin level 1); Montana (admin level 1); Massac County (admin level 2), Illinois (admin level 1); Brown County (kondado sa Estados Unidos, Minnesota) (admin level 2), Minnesota (admin level 1); Moody County (admin level 2), South Dakota (admin level 1); Arizona (admin level 1); Washington (admin level 1); Oconto County (admin level 2), Wisconsin (admin level 1); Morrow megye (admin level 2), Oregon (admin level 1); Missouri (admin level 1); New Mexico (admin level 1); Beadle County (admin level 2), South Dakota (admin level 1); Adair County (admin level 2), Oklahoma (admin level 1); Dixon County (admin level 2), Nebraska (admin level 1); Roseau County (admin level 2), Minnesota (admin level 1); Alaska (admin level 1); Benton County (admin level 2), Mississippi (admin level 1); Cherokee County (admin level 2), Texas (admin level 1); Sac County (admin level 2), Iowa (admin level 1); McPherson County, Nebraska (admin level 2), Nebraska (admin level 1); Montana Province (admin level 1); Lewis County (admin level 2), Washington (admin level 1); Juneau County (admin level 2), Wisconsin (admin level 1); Iowa (admin level 1); Sioux County (kondado sa Estados Unidos, North Dakota) (admin level 2), North Dakota (admin level 1); Macomb County (admin level 2), Michigan (admin level 1)",United States of America,Phasianidae; Aves; Branta canadensis; Anser; Anatidae; Galliformes; Homo sapiens; Gallus gallus; Anas,2015_04_03_8; 2015_04_17_7; 2015_04_17_9; 2015_03_27_3; 2015_06_26_4; 2015_04_17_11; 2015_05_01_1; 2014_12_29_2; 2015_01_08_7; 2015_06_12_2; 2015_05_01_2; 2015_06_19_4; 2015_03_20_1; 2015_04_24_9; 2015_05_01_7; 2016_09_01_1; 2015_04_17_8; 2015_04_17_10; 2015_04_17_12; 2014_12_16_1; 2015_05_11_4; 2015_05_29_5; 2015_04_24_8; 2015_03_13_1; 2015_07_08_2; 2016_02_22_2; 2015_06_05_5; 2015_05_11_2; 2015_07_08_5; 2015_05_01_5; 2015_02_23_3; 2015_05_15_4; 2015_06_12_4; 2015_01_23_10; 2015_05_01_4; 2015_04_03_2; 2015_05_01_6; 2015_03_02_2; 2015_05_22_5; 2015_04_24_10; 2015_03_20_6 +22,flu_00023,2016-11-28 to 2017-1-24,H5N8 subtype,Aomori Prefecture (admin level 1); Niigata Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas; Homo sapiens,2016_12_06_13; 2017_02_01_10; 2016_12_13_16 +23,flu_00024,2009-10-21 to 2010-07-18,H5N1 subtype,"Bac Giang (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1); Thanh Hóa (admin level 1); Gia Lai (admin level 1); Bac Kan (admin level 1); Cao Bang (admin level 1); Ha Tinh (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Kon Tum (admin level 1); Thai Nguyen (admin level 2), Thái Nguyên (admin level 1); Khanh Hoa (admin level 1); Soc Trang (admin level 2), Sóc Trăng (admin level 1); Ca Mau (admin level 1)",Vietnam,Aves; Erithacus rubecula; Galliformes; Homo sapiens; Gallus gallus; Anas,2009_12_14_2; 2010_05_04_2; 2010_08_20_2; 2010_07_02_3; 2010_03_01_3; 2010_03_09_4; 2010_01_27_5; 2010_03_09_6; 2010_04_12_3; 2010_03_01_6; 2010_04_19_3; 2010_02_19_2; 2009_11_06_2; 2010_08_26_3; 2010_01_12_5 +24,flu_00025,2015-01-23 to 2015-03-27,H5N1 subtype,"Jiangsu (admin level 1); Henan (admin level 1); Kunming (admin level 2), Yunnan (admin level 1); Sanmenxia (admin level 2), Henan (admin level 1)",People's Republic of China,Aves; Anas; Homo sapiens,2015_01_23_1; 2015_01_30_7; 2015_03_27_6 +25,flu_00026,2012-03-30 to 2012-05-27,H5N1 subtype,Phnom Penh (admin level 2); Kampong Chhnang Province (admin level 1); Kampong Speu Province (admin level 1),Cambodia,Aves; Sus scrofa; Galliformes; Homo sapiens; Gallus gallus; Metazoa,2012_06_11_3; 2012_04_12_4; 2012_06_11_7 +26,flu_00027,2009-01-14 to 2009-05-09,H5N1 subtype,"Gaibandha District (admin level 2), Rangpur Division (admin level 1); Bileh Savar County (admin level 2), Ardabil Province (admin level 1); Chittagong District (admin level 2), Chattogram Division (admin level 1); Netrakona (admin level 2), Mymensingh Division (admin level 1); Gaibandha (admin level 2), Rangpur Division (admin level 1); Comilla District (admin level 2), Chattogram Division (admin level 1); Kurigram (admin level 2), Rangpur Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2009_01_14_2; 2009_06_19_1; 2009_02_23_4; 2009_03_10_2; 2009_04_20_2; 2009_02_06_2; 2009_02_13_2; 2009_03_17_3; 2009_04_28_1 +27,flu_00028,2012-09-12 to 2012-09-20,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves; Galliformes; Homo sapiens,2012_09_14_1; 2012_09_20_3 +28,flu_00029,2008-02-01 to 2009-09-08,H5N1 subtype,"Merangin Regency (admin level 2), Jambi Province (admin level 1); Wonogiri (admin level 2), Central Java Province (admin level 1); Riau Province (admin level 1); Banten Province (admin level 1); Jakarta (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Asahan (admin level 2), North Sumatra Province (admin level 1); Kepulauan Riau (admin level 1); Pekanbaru (admin level 2), Riau Province (admin level 1); Bekasi (admin level 2), West Java Province (admin level 1); Banyuwangi (admin level 2), East Java (admin level 1); Jambi Province (admin level 1); Kabupatén Tangerang (admin level 2), Banten Province (admin level 1); Central Sulawesi Province (admin level 1); Malang (admin level 2), East Java (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Bantul (admin level 2), Special Region of Yogyakarta (admin level 1); Kabupaten Dharmasraya (admin level 2), West Sumatra (admin level 1); Kabupaten Bekasi (admin level 2), West Java Province (admin level 1); Depok (admin level 2), West Java Province (admin level 1); South Sulawesi (admin level 1); Tombali Region (admin level 1); Lampung Province (admin level 1); Bali (admin level 1); West Java Province (admin level 1); South Jakarta (admin level 2), Jakarta (admin level 1); Bandung Regency (admin level 2), West Java Province (admin level 1); East Java (admin level 1); Ngawi (admin level 2), East Java (admin level 1); North Sumatra Province (admin level 1)",Indonesia,Aves; Gallus gallus; Galliformes; Lonchura punctulata; Homo sapiens,2008_08_15_3; 2009_03_30_5; 2008_05_23_3; 2009_02_13_5; 2008_08_11_5; 2008_09_26_4; 2008_09_08_3; 2008_11_14_5; 2009_01_30_3; 2009_09_08_2; 2009_07_21_2; 2009_01_30_8; 2008_04_03_5; 2009_01_21_6; 2008_11_26_2; 2008_09_11_4; 2009_06_29_2; 2009_03_02_5; 2009_03_10_5; 2008_02_01_4; 2009_08_07_3; 2009_07_10_2; 2008_06_26_4; 2009_03_23_3; 2008_07_18_3; 2009_04_08_5; 2009_02_13_9; 2008_02_20_3; 2008_11_26_3; 2008_12_12_4; 2009_05_05_1; 2009_04_20_5; 2009_05_01_3; 2008_10_16_3 +29,flu_00030,2012-08-10 to 2012-09-25,H5N1 subtype,Central Java Province (admin level 1); Special Region of Yogyakarta (admin level 1),Indonesia,Aves; Galliformes; Anas; Homo sapiens,2012_08_20_3; 2012_12_27_2 +30,flu_00031,2013-10-28 to 2015-06-12,H7N9 subtype,"Jiangsu (admin level 1); Anhui Province (admin level 1); Fujian (admin level 1); Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Dongguan (admin level 2), Guangdong (admin level 1); Heyuan (admin level 2), Guangdong (admin level 1); Zhuhai (admin level 2), Guangdong (admin level 1); Shandong (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Jiangsu Province (Republic of China) (admin level 1); Beijing (admin level 1); Hubei (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Zhejiang (admin level 1); Shanghai (admin level 1); Guangxi Zhuang Autonomous Region (admin level 1); Urumqi (admin level 2), Xinjiang (admin level 1); Yangjiang (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Chaoyang (admin level 2), Liaoning (admin level 1); Hunan (admin level 1); Guizhou (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2015_03_06_6; 2014_12_29_9; 2013_11_08_4; 2014_01_31_3; 2016_10_03_6; 2013_12_13_2; 2014_03_07_2; 2014_02_19_1; 2014_02_07_3; 2014_11_12_2; 2014_05_16_2; 2014_05_23_1; 2014_06_17_2; 2014_01_31_2; 2014_12_16_3; 2015_02_13_5; 2014_01_09_7; 2014_03_07_6; 2014_12_23_5; 2014_04_10_9; 2014_06_06_1; 2015_01_08_11; 2014_05_30_1; 2015_01_30_6; 2014_03_07_7; 2014_01_22_6; 2015_05_01_8; 2014_06_23_3; 2014_07_21_1; 2014_02_19_12; 2013_12_06_3; 2013_10_28_4; 2014_11_03_10; 2014_10_24_5; 2014_03_07_13; 2015_03_02_11; 2015_05_29_7; 2015_06_12_5; 2014_05_16_1; 2015_01_08_6; 2014_01_09_10; 2014_01_31_6; 2014_12_09_5; 2014_04_10_4 +31,flu_00032,2014-01-31 to 2014-02-07,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1); Jiangxi (admin level 1)",People's Republic of China,Aves; Galliformes; Homo sapiens,2014_02_07_4; 2014_01_31_5 +32,flu_00033,2010-04-17 to 2010-04-22,H5N1 subtype,Prey Veng Province (admin level 1),Cambodia,Gallus gallus; Galliformes; Anas; Homo sapiens,2010_04_26_2; 2010_05_10_1 +33,flu_00034,2017-05-30 to 2017-06-13,H5N8 subtype,"North Jeolla Province (admin level 1); Gunsan (admin level 2), North Jeolla Province (admin level 1); Gyeonggi Province (admin level 1); Jeju (admin level 1)",South Korea,Aves; Gallus gallus; Corvus macrorhynchos; Anas; Galliformes,2017_06_13_3; 2017_05_30_8; 2017_06_06_6 +34,flu_00035,2012-02-24 to 2012-02-24,H5N1 subtype,Yangon Region (admin level 1); Sagaing Region (admin level 1); Mandalay Region (admin level 1),Myanmar,Aves; Gallus gallus; Galliformes,2012_03_06_3 +35,flu_00036,2006-11-14 to 2007-06-04,H5N1 subtype,"Lhasa (admin level 2), Tibet (admin level 1); Anhui Province (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1); Hong Kong (admin level 1); Hunan (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Heilongjiang (admin level 1)",People's Republic of China,Aves; Pica pica; Lonchura punctulata; Falco peregrinus; Lanius schach; Sturnus vulgaris; Psittacidae; Galliformes; Pionus menstruus; Homo sapiens; Corvus splendens; Gallus gallus; Sturnus sericeus; Anas,2007_06_01_1; 2007_01_18_4; 2007_01_08_2; 2007_04_06_1; 2007_02_07_1; 2007_02_16_1; 2006_11_14_1; 2006_12_07_1; 2007_03_20_1; 2007_03_08_1; 2007_05_30_2; 2007_06_12_1; 2007_06_15_1; 2007_06_22_1; 2007_01_22_1; 2007_01_18_1 +36,flu_00037,2011-09-15 to 2012-04-16,H5N1 subtype,"Bengkulu Province (admin level 1); Bali (admin level 1); Special Region of Yogyakarta (admin level 1); South Sulawesi (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Kabupatèn Lombok Wétan (admin level 2), West Nusa Tenggara (admin level 1); Mataram (admin level 2), West Nusa Tenggara (admin level 1); West Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Kota Denpasar (admin level 2), Bali (admin level 1); Central Java Province (admin level 1); West Java Province (admin level 1); North Jakarta (admin level 2), Jakarta (admin level 1); North Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); North Sumatra Province (admin level 1)",Indonesia,Galliformes; Anas; Gallus gallus; Aves; Homo sapiens,2011_10_18_3; 2012_02_22_6; 2011_10_24_2; 2012_04_12_6; 2012_03_12_5; 2012_04_09_4; 2012_02_02_8; 2012_04_16_1; 2012_02_29_6; 2011_10_18_1; 2011_09_15_4; 2011_09_21_4; 2011_10_24_1; 2011_10_07_1; 2011_11_17_9; 2011_10_31_1; 2011_12_06_3 +37,flu_00038,2008-04-21 to 2008-05-05,H5N1 subtype,Aomori Prefecture (admin level 1); Akita Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas,2008_05_02_1; 2008_05_16_1 +38,flu_00039,2014-11-26 to 2015-05-29,H5N1 subtype,"Chandigarh (admin level 1); Amethi district (admin level 2), Uttar Pradesh (admin level 1); Kollam (admin level 2), Kerala (admin level 1); Sultanpur district (admin level 2), Uttar Pradesh (admin level 1); Kottayam district (admin level 2), Kerala (admin level 1)",India,Aves; Columbidae; Anser; Galliformes; Homo sapiens; Corvus splendens; Gallus gallus; Anas,2015_05_29_3; 2014_11_26_2; 2014_12_19_5; 2015_04_17_4; 2015_03_20_4; 2015_01_30_2; 2015_03_27_2 +39,flu_00040,2015-11-25 to 2016-06-07,H5N6 subtype,"Guangdong (admin level 1); Hong Kong (admin level 1); Xiangxi Tujia eta Miao Prefektura autonomoa (admin level 2), Hunan (admin level 1); Huizhou (admin level 2), Guangdong (admin level 1); Zhuzhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Hunan (admin level 1); Ganzhou (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2016_06_07_7; 2016_01_08_1; 2016_03_21_7; 2016_01_22_1; 2016_03_21_1; 2016_06_10_5; 2015_12_18_1; 2016_03_14_1; 2016_01_15_6; 2016_02_29_2; 2016_01_08_6; 2015_11_25_1; 2016_05_03_4; 2016_06_24_2; 2016_05_06_6; 2016_01_22_9 +40,flu_00041,2012-12-03 to 2012-12-03,H5N1 subtype,Damietta Governorate (admin level 1),Egypt,Galliformes; Homo sapiens,2012_12_21_3 +41,flu_00042,2014-09-25 to 2014-10-25,H5N1 subtype,"Gorontalo Province (admin level 1); Reggenza di Bone Bolango (admin level 2), Gorontalo Province (admin level 1)",Indonesia,Gallus gallus,2014_11_03_9 +42,flu_00043,2007-07-05 to 2007-09-04,H5N1 subtype,"Bavaria (admin level 1); Leipzig (city); Lower Saxony (admin level 1); Thuringia (admin level 1); Kreis Jena-Land (admin level 2), Gera District (admin level 1)",Germany,Aves; Galliformes; Anas,2007_09_04_2; 2007_07_17_3; 2007_07_05_2 +43,flu_00044,2013-07-18 to 2013-11-15,H5N1 subtype,"Kampot Province (admin level 1); Pailin Province (admin level 1); Romdoul District (admin level 2), Svay Rieng Province (admin level 1); Pursat Province (admin level 1); Kandal Province (admin level 1); Baray (distrito) (admin level 2), Kampong Thom Province (admin level 1); Prey Veng Province (admin level 1); Kampong Speu Province (admin level 1); Battambang Province (admin level 1)",Cambodia,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2013_10_28_5; 2013_09_23_2; 2013_08_23_3; 2013_08_19_2; 2013_11_08_3; 2013_07_18_2; 2013_11_15_2; 2013_11_01_2 +44,flu_00045,2012-11-30 to 2012-12-31,H5N1 subtype,"Bogor (admin level 2), West Java Province (admin level 1); Semarang (admin level 2), Central Java Province (admin level 1); Banten Province (admin level 1); West Java Province (admin level 1)",Indonesia,Galliformes; Gallus gallus; Anas; Homo sapiens,2012_12_14_2; 2012_12_21_1; 2012_12_27_2; 2012_02_02_8; 2012_12_21_4; 2013_01_25_1 +45,flu_00046,2007-05-01 to 2007-05-03,H5N1 subtype,United States Virgin Islands (admin level 1),United States of America,Aves,2007_05_03_2; 2007_05_11_1 +46,flu_00047,2012-11-15 to 2013-05-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Homo sapiens,2013_04_30_4; 2012_11_15_1; 2012_02_02_11; 2013_02_11_2; 2013_05_03_1; 2012_12_27_1 +47,flu_00048,2017-12-21 to 2017-12-21,H5N8 subtype,"Gorzów County (admin level 2), Lubusz Voivodeship (admin level 1)",Poland,Aves; Gallus gallus; Anas,2017_01_10_16 +48,flu_00049,2016-11-23 to 2016-12-20,Influenza A virus,Astrakhan Oblast (admin level 1); Republic of Kalmykia (admin level 1),Russia,Aves; Galliformes; Homo sapiens,2016_12_13_18; 2016_12_20_14 +49,flu_00050,2007-12-14 to 2007-12-25,H5N1 subtype,"Lower Saxony (admin level 1); Berlin (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1); Neubrandenburg District (admin level 1)",Germany,Aves; Gallus gallus; Galliformes,2007_12_21_3; 2008_01_25_3; 2008_10_09_4; 2008_01_04_5 +50,flu_00051,2016-11-07 to 2017-02-01,H5N8 subtype,Brandenburg (admin level 1); Mecklenburg-Vorpommern (admin level 1),Germany,Aves; Galliformes; Anas platyrhynchos; Homo sapiens; Larus marinus; Anas; Gallus gallus; Laridae,2016_12_06_4; 2016_12_06_9; 2016_11_15_4; 2016_11_15_10; 2016_12_13_5; 2017_02_01_3 +51,flu_00052,2009-10-10 to 2009-10-19,H1N1 subtype,Norway (country),Norway,Galliformes; Sus scrofa,2009_10_22_1; 2009_11_20_3 +52,flu_00053,2012-08-06 to 2012-08-20,H5N1 subtype,"Ninh Binh (admin level 2), Ninh Bình (admin level 1); Hai Duong (admin level 1); Nam Dinh (admin level 2), Nam Định (admin level 1)",Vietnam,Aves; Galliformes,2012_08_20_1; 2012_08_10_1; 2012_08_06_2 +53,flu_00054,2015-01-16 to 2015-02-13,H5N8 subtype,"Busan (admin level 1); Seoul (admin level 1); Anseong (admin level 2), Gyeonggi Province (admin level 1); Sejong City (admin level 1)",South Korea,Aves; Gallus gallus; Anser; Anas,2015_02_13_1; 2015_01_16_2 +54,flu_00055,2010-01-12 to 2010-01-12,H1N1 subtype,Yamagata Prefecture (admin level 1),Japan,Sus scrofa,2010_01_27_2 +55,flu_00056,2012-06-11 to 2012-06-11,Influenza A virus,Amur Oblast (admin level 1),Russia,Galliformes,2012_06_11_5 +56,flu_00057,2013-09-09 to 2013-09-09,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves; Galliformes,2013_09_09_3 +57,flu_00058,2015-01-23 to 2015-01-23,H5N1 subtype,Haifa District (admin level 1),Israel,Aves,2015_01_23_3 +58,flu_00059,2009-09-14 to 2010-01-12,H1N1 subtype,"Indiana (admin level 1); Riley County (admin level 2), Kansas (admin level 1); New York (admin level 1); North Carolina (admin level 1); West Kansas (admin level 1)",United States of America,Aves; Sus scrofa; Canis lupus familiaris; Homo sapiens,2010_01_12_13; 2009_11_06_7; 2009_11_20_4; 2009_09_14_3 +59,flu_00060,2010-12-18 to 2011-03-14,H5N1 subtype,"Aomori Prefecture (admin level 1); Fukushima Prefecture (admin level 1); Moita (admin level 2), Setúbal District (admin level 1); Miyazaki Prefecture (admin level 1); Mie Prefecture (admin level 1); Nagasaki Prefecture (admin level 1); Aichi Prefecture (admin level 1); Ibaraki Prefecture (admin level 1); Tokushima Prefecture (admin level 1); Yamaguchi Prefecture (admin level 1); Nara Prefecture (admin level 1); Kagoshima Prefecture (admin level 1); Shimane Prefecture (admin level 1); Chiba Prefecture (admin level 1); Tochigi Prefecture (admin level 1)",Japan,Aves; Podiceps cristatus; Galliformes; Anas platyrhynchos; Gallus gallus; Anas,2011_01_24_2; 2011_02_11_1; 2011_01_14_1; 2011_03_22_4; 2011_02_22_2; 2011_01_28_3; 2011_03_15_5; 2011_03_22_1; 2011_02_11_7; 2011_02_22_6; 2011_02_08_3; 2011_01_28_5; 2011_02_08_1; 2011_02_28_1; 2011_03_07_1 +60,flu_00061,2015-11-20 to 2015-11-20,H5N1 subtype,Siem Reap Province (admin level 1); Battambang Province (admin level 1),Cambodia,Aves; Anas,2015_11_20_2 +61,flu_00062,2016-11-25 to 2017-02-07,H5N8 subtype,"Gotland County (admin level 1); Stockholm County (admin level 1); Utö landskommun (admin level 2), Haninge Municipality (admin level 1); Norrköping Chū-tī-chhī (admin level 2), Östergötland County (admin level 1)",Sweden,Aves; Gallus gallus; Anas platyrhynchos; Galliformes,2017_02_07_15; 2017_01_10_5; 2016_12_06_19 +62,flu_00063,2015-03-02 to 2015-05-22,H5N1 subtype,"Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1)",Vietnam,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2015_03_02_9; 2015_04_17_6; 2015_03_20_7; 2015_05_22_6 +63,flu_00064,2009-01-09 to 2009-06-05,H5N1 subtype,Suez Governorate (admin level 1); Sohag Governorate (admin level 1); Qena Governorate (admin level 1); Beheira Governorate (admin level 1); Asyut Governorate (admin level 1); Alexandria Governorate (admin level 1); Cairo Governorate (admin level 1); Qalyubia Governorate (admin level 1),Egypt,Aves; Anser; Galliformes; Homo sapiens; Gallus gallus; Anas,2009_03_23_4; 2009_05_15_3; 2009_01_21_5; 2009_05_11_4; 2009_06_05_3; 2009_05_01_4; 2009_03_17_9; 2009_04_08_4; 2009_05_22_3; 2009_02_13_4; 2009_03_10_4; 2009_02_06_9; 2009_03_30_4; 2009_06_12_4; 2009_02_13_8; 2009_04_28_3; 2009_04_14_3 +64,flu_00065,2016-11-15 to 2016-12-20,H5N6 subtype,"Yangju (admin level 2), Gyeonggi Province (admin level 1); Seoul (admin level 1); Cheongju (admin level 2), North Chungcheong Province (admin level 1); Muan megye (admin level 2), South Jeolla Province (admin level 1)",South Korea,Aves; Sus scrofa; Galliformes; Homo sapiens; Gallus gallus; Anas,2016_11_18_8; 2016_11_15_7; 2016_12_29_7; 2016_12_01_10; 2016_12_20_15; 2016_12_29_3 +65,flu_00066,2016-01-16 to 2016-03-04,H5N1 subtype,Giza Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Aves; Homo sapiens,2016_01_29_5; 2016_01_22_2; 2016_03_21_9 +66,flu_00067,2015-10-16 to 2016-07-26,H7N9 subtype,"Jieyang (admin level 2), Guangdong (admin level 1); Jiangsu (admin level 1); Fujian (admin level 1); Longyan (admin level 2), Fujian (admin level 1); Guangdong (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Yongzhou (admin level 2), Hunan (admin level 1); Henan (admin level 1); Jiangxi (admin level 1); Hong Kong (admin level 1); Hubei (admin level 1); Beijing (admin level 1); Langfang (admin level 2), Hebei (admin level 1); Liaoning (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Zhejiang (admin level 1); Zhaoqing (admin level 2), Guangdong (admin level 1); Shenyang (admin level 2), Liaoning (admin level 1); Tianjin (admin level 1); Shaoxing (admin level 2), Zhejiang (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Changzhou (admin level 2), Jiangsu (admin level 1); Hunan (admin level 1); Chaozhou (admin level 2), Guangdong (admin level 1)",People's Republic of China,Aves; Galliformes; Homo sapiens,2016_06_10_2; 2016_01_15_7; 2016_02_08_7; 2016_02_16_3; 2015_11_25_6; 2016_07_29_5; 2016_04_26_10; 2016_01_08_7; 2016_09_01_3; 2016_07_26_2; 2016_02_22_7; 2016_01_29_4; 2015_10_16_5; 2016_03_14_9; 2016_06_07_8; 2016_07_12_5; 2016_03_21_8; 2016_06_17_4; 2016_05_27_2; 2016_05_06_7; 2016_05_20_7; 2016_04_26_11; 2015_11_13_4; 2016_02_29_5 +67,flu_00068,2009-04-14 to 2009-05-11,H5N1 subtype,"Kentucky (admin level 1); Giles County (admin level 2), Tennessee (admin level 1); Lincoln County (admin level 2), Mississippi (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Homo sapiens,2009_04_14_2; 2009_05_11_3 +68,flu_00069,2010-07-21 to 2011-05-21,H5N1 subtype,Giza Governorate (admin level 1); Qena Governorate (admin level 1); Luxor Governorate (admin level 1); Cairo Governorate (admin level 1); Alexandria Governorate (admin level 1); Aswan Governorate (admin level 1); Qalyubia Governorate (admin level 1); Dakahlia Governorate (admin level 1); Gharbia Governorate (admin level 1); Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Homo sapiens,2010_10_15_2; 2011_04_05_6; 2011_02_08_4; 2010_12_09_5; 2011_01_14_7; 2010_08_18_2; 2010_08_16_2; 2011_01_24_6; 2010_07_30_3; 2011_06_20_6; 2011_03_15_9; 2011_03_07_3; 2010_08_20_3; 2011_06_07_5; 2010_08_26_4; 2011_04_12_4 +69,flu_00070,2009-10-26 to 2009-10-26,H5N1 subtype,Tuva Republic (admin level 1); Moscow (admin level 1),Russia,Aves; Podicipedidae; Galliformes,2009_11_06_1 +70,flu_00071,2010-11-01 to 2011-03-15,H5N1 subtype,Hong Kong (admin level 1); Qinghai (admin level 1),People's Republic of China,Copsychus saularis; Aves; Anser; Galliformes; Homo sapiens; Gallus gallus,2011_02_11_5; 2010_11_18_3; 2010_12_03_1; 2011_01_28_2; 2011_01_24_1; 2011_03_15_2 +71,flu_00072,2014-10-01 to 2015-03-06,H5N1 subtype,Giza Governorate (admin level 1); Sohag Governorate (admin level 1); Beheira Governorate (admin level 1); Cairo Governorate (admin level 1); Minya Governorate (admin level 1); Faiyum Governorate (admin level 1); Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Homo sapiens,2014_11_25_4; 2014_12_09_6; 2014_12_16_5; 2014_12_23_6; 2015_02_13_6; 2014_10_06_2; 2015_01_23_12; 2014_12_29_8; 2015_03_06_7; 2015_03_13_5; 2015_03_02_13; 2014_12_19_6; 2015_01_30_8 +72,flu_00073,2013-08-19 to 2013-09-09,H7N7 subtype,"Provincia de Ferrara (admin level 2), Emilia-Romagna (admin level 1); Ferrara (admin level 2), Emilia-Romagna (admin level 1); Bologna (admin level 2), Emilia-Romagna (admin level 1); Provincia Augustae Praetoriensis (admin level 2), Piedmont (admin level 1)",Italy,Phasianidae; Aves; Galliformes,2013_09_09_2; 2013_09_13_2; 2013_08_29_1 +73,flu_00074,2016-10-03 to 2016-11-25,H5N2 subtype,South Africa (country),South Africa,Aves,2016_10_03_3; 2016_12_06_17 +74,flu_00075,2009-12-22 to 2009-12-22,H1N1 subtype,England (admin level 1),United Kingdom,Sus scrofa,2010_01_12_12 +75,flu_00076,2010-01-04 to 2010-02-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Sirajganj (distrito sa Bangladesh) (admin level 2), Rajshahi Division (admin level 1); Rajshahi Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2010_02_03_4; 2010_01_27_3; 2010_02_03_1 +76,flu_00077,2009-08-05 to 2009-09-08,H5N1 subtype,"Meeker County (admin level 2), Minnesota (admin level 1)",United States of America,Aves; Galliformes; Anas; Homo sapiens,2009_09_08_1; 2009_09_01_1; 2009_08_07_2 +77,flu_00078,2015-08-18 to 2015-10-05,H5N2 subtype,South Africa (country),South Africa,Aves,2015_10_05_4; 2015_09_30_3; 2015_08_18_4 +78,flu_00079,2010-03-26 to 2010-06-07,H5N1 subtype,"Ezhou (admin level 2), Hubei (admin level 1); Hong Kong (admin level 1); Tibet (admin level 1)",People's Republic of China,Pyrrhocorax pyrrhocorax; Aves; Mareca penelope; Larus brunnicephalus; Anser indicus; Homo sapiens; Cepora,2010_04_02_2; 2010_06_11_1; 2010_07_12_1; 2010_06_07_4; 2010_07_16_1 +79,flu_00080,2010-02-24 to 2010-04-01,H5N1 subtype,Damietta Governorate (admin level 1); Gharbia Governorate (admin level 1); Qalyubia Governorate (admin level 1),Egypt,Galliformes; Anas; Homo sapiens,2010_03_09_5; 2010_04_02_4; 2010_03_26_3; 2010_05_28_1 +80,flu_00081,2013-10-28 to 2014-03-07,H5N1 subtype,"Dong Thap Province (admin level 1); Bac Ninh (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1)",Vietnam,Aves; Galliformes; Gallus gallus; Anas; Homo sapiens,2013_11_08_1; 2014_02_19_5; 2014_01_09_5; 2014_03_07_5; 2014_02_07_5; 2013_10_28_6; 2014_01_22_2 +81,flu_00082,2015-09-30 to 2015-11-20,H5N8 subtype,"North Chungcheong Province (admin level 1); North Pyeongan Province, Republic of Korea (admin level 1); South Jeolla Province (admin level 1); district de Eumseong (admin level 2), North Chungcheong Province (admin level 1)",South Korea,Aves; Gallus gallus; Anas,2015_10_28_4; 2015_09_30_4; 2015_10_05_5; 2015_11_20_4 +82,flu_00083,2012-02-02 to 2012-05-22,H5N2 subtype,Taichung (admin level 1),Taiwan,Aves; Gallus gallus; Anas,2012_04_09_3; 2012_05_22_3; 2012_03_12_4 +83,flu_00084,2007-06-12 to 2007-06-12,H5N1 subtype,Selangor (admin level 1); Kuala Lumpur (admin level 1),Malaysia,Gallus gallus; Galliformes,2007_06_12_3 +84,flu_00085,2015-08-07 to 2016-01-22,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves; Gallus gallus; Anser; Homo sapiens,2015_10_05_6; 2015_11_20_5; 2015_08_28_5; 2015_08_07_8; 2015_10_14_4; 2016_01_22_8; 2015_11_25_5; 2016_01_15_5; 2015_09_04_4; 2015_12_18_5 +85,flu_00086,2008-12-12 to 2009-06-12,H5N1 subtype,"Kamrup district (admin level 2), Assam (admin level 1); West Bengal (admin level 1); Darjeeling District (admin level 2), West Bengal (admin level 1); Balrampur district (admin level 2), Uttar Pradesh (admin level 1); Manipur (admin level 1); Darjeeling (admin level 2), West Bengal (admin level 1); Uttar Dinajpur district (admin level 2), West Bengal (admin level 1); Assam (admin level 1); Districte de North Dinajpur (admin level 2), West Bengal (admin level 1)",India,Aves; Gallus gallus; Galliformes; Anser; Anas,2009_05_01_2; 2009_01_14_5; 2009_03_23_1; 2009_06_01_2; 2009_06_05_2; 2008_12_12_3; 2009_04_08_2; 2009_02_06_4; 2009_03_02_2; 2009_02_23_6; 2009_03_23_2; 2009_03_02_4; 2009_05_01_1; 2009_06_12_2 +86,flu_00087,2009-04-12 to 2009-04-12,H1N1 subtype,Alberta (admin level 1),Canada,Sus scrofa,2009_05_11_1 +87,flu_00088,2010-01-05 to 2010-01-20,H5N1 subtype,"Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Murshidabad district (admin level 2), West Bengal (admin level 1); Assam (admin level 1); district de Murshidabad (admin level 2), West Bengal (admin level 1)",India,Aves; Gallus gallus; Galliformes; Anser; Anas,2010_01_12_2; 2010_01_20_2 +88,flu_00089,2011-01-01 to 2011-06-22,H5N1 subtype,"Kishoreganj District (admin level 2), Dhaka Division (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1); Noakhali District (admin level 2), Chattogram Division (admin level 1); Kalamazoo County (admin level 2), Michigan (admin level 1); Bhola District (admin level 2), Barisal Division (admin level 1); Gazipur District (admin level 2), Dhaka Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Homo sapiens,2011_02_22_3; 2011_05_25_1; 2011_03_15_1; 2011_03_29_3; 2011_03_22_5; 2011_04_05_7; 2011_07_11_1; 2011_02_08_2; 2011_01_14_3 +89,flu_00090,2013-02-01 to 2013-05-23,H5N1 subtype,Tibet (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Tibet Autonomous Region (admin level 1); Guizhou (admin level 1),People's Republic of China,Aves; Chroicocephalus ridibundus; Anser; Galliformes; Homo sapiens; Gallus gallus,2013_05_23_4; 2013_02_01_1; 2013_02_15_3; 2013_03_01_4; 2013_04_12_3 +90,flu_00091,2010-07-02 to 2010-07-18,H5N1 subtype,"Juneau, Alaska (admin level 2), Alaska (admin level 1); Gia Lai (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Anas,2010_08_16_5; 2010_08_18_5; 2010_07_02_1 +91,flu_00092,2007-01-07 to 2007-02-07,H5N1 subtype,"Bali (admin level 1); Tangerang (admin level 2), Banten Province (admin level 1); West Java Province (admin level 1)",Indonesia,Sus scrofa; Gallus gallus; Anas; Homo sapiens,2007_01_18_3; 2007_02_07_5 +92,flu_00093,2010-12-07 to 2011-05-16,H5N1 subtype,"North Chungcheong Province (admin level 1); Yeoncheon (admin level 2), Gyeonggi Province (admin level 1); Anseong Chhī (admin level 2), Gyeonggi Province (admin level 1); Yeongam County (admin level 2), South Jeolla Province (admin level 1); South Jeolla Province (admin level 1); Pyeongtaek (admin level 2), Gyeonggi Province (admin level 1); Sacheon (admin level 2), South Gyeongsang Province (admin level 1); Seosan (admin level 2), South Chungcheong Province (admin level 1); Gyeonggi Province (admin level 1); Seoul (admin level 1); Sangju (admin level 2), North Gyeongsang Province (admin level 1); Icheon (admin level 2), Gyeonggi Province (admin level 1); North Jeolla Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1)",South Korea,Aves; Galliformes; Anas platyrhynchos; Homo sapiens; Aix galericulata; Gallus gallus; Anas,2010_12_17_1; 2011_04_05_2; 2011_01_24_5; 2011_01_14_2; 2011_02_22_7; 2010_12_09_1; 2011_06_07_1; 2011_01_28_6; 2011_01_14_5; 2011_03_15_8 +93,flu_00094,2014-01-16 to 2014-03-20,H5N8 subtype,"South Gyeongsang Province (admin level 1); Gwacheon (admin level 2), Gyeonggi Province (admin level 1); Busan (admin level 1); Gyeonggi Province (admin level 1); Seoul (admin level 1); South Chungcheong Province (admin level 1); North Jeolla Province (admin level 1); Gochang (admin level 2), North Jeolla Province (admin level 1)",South Korea,Aves; Anser fabalis; Galliformes; Homo sapiens; Gallus gallus; Anas,2014_02_19_6; 2014_01_22_1; 2014_03_20_6; 2014_09_30_4; 2014_03_20_1; 2014_01_31_1 +94,flu_00095,2011-06-30 to 2011-06-30,H5N1 subtype,"West Java Province (admin level 1); Ratchasan (admin level 2), Chachoengsao (admin level 1)",Thailand,Aves; Homo sapiens,2011_07_11_4 +95,flu_00096,2014-01-24 to 2014-04-10,H5N1 subtype,Kampot Province (admin level 1); Kandal Province (admin level 1); Siem Reap Province (admin level 1); Kampong Chhnang Province (admin level 1); Kratié Province (admin level 1),Cambodia,Aves; Gallus gallus; Galliformes; Homo sapiens,2014_03_07_8; 2014_02_07_2; 2014_04_10_8; 2014_03_20_7; 2014_03_07_12; 2014_04_10_6 +96,flu_00097,2011-09-06 to 2012-02-26,H5N1 subtype,"Manikganj District (admin level 2), Dhaka Division (admin level 1); Khulna Division (admin level 1); Chuadanga District (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1); distretto di Meherpur (admin level 2), Khulna Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Homo sapiens,2012_02_02_2; 2012_03_06_6; 2011_09_15_6; 2011_12_22_2; 2011_11_17_5; 2012_01_06_3; 2011_09_15_2 +97,flu_00098,2006-12-26 to 2007-04-06,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Phitsanulok (admin level 1)",Thailand,Merops philippinus; Aves; Columbidae; Galliformes; Aegypius monachus; Gallus gallus; Anas,2010_11_05_1; 2007_01_22_2; 2007_02_07_4; 2007_04_06_2 +98,flu_00099,2013-01-25 to 2013-03-01,H5N1 subtype,Kampong Speu Province (admin level 1); Kampot Province (admin level 1); Kampong Cham Province (admin level 1),Cambodia,Aves; Galliformes; Homo sapiens,2013_03_01_3; 2013_02_15_2; 2013_01_25_2; 2013_02_01_3 +99,flu_00100,2014-02-06 to 2014-04-20,H5N1 subtype,East Java (admin level 1),Indonesia,Aves; Gallus gallus; Homo sapiens; Anas; Galliformes,2014_09_10_3; 2014_02_19_3; 2014_02_19_4; 2014_06_23_4 +100,flu_00101,2013-03-25 to 2013-08-19,H7N9 subtype,"Shantou (admin level 2), Guangdong (admin level 1); Anhui (admin level 1); Hebei (admin level 1); Hangzhou (kapital sa lalawigan sa Republikang Popular sa Tsina) (admin level 2), Zhejiang (admin level 1); Jiangsu (admin level 1); Jiangxi (admin level 1); Zhejiang (admin level 1); Fujian (admin level 1); Guangdong (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Beijing (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anser; Galliformes; Homo sapiens; Columbidae; Anas,2013_04_08_1; 2013_04_19_4; 2015_03_02_10; 2013_05_30_1; 2013_05_13_3; 2013_04_12_5; 2013_04_12_1; 2013_04_30_3; 2013_05_03_3; 2013_05_13_1; 2013_08_19_3; 2013_05_30_5; 2013_06_07_1; 2013_06_28_2; 2013_08_23_2; 2013_05_24_1; 2014_12_09_5 +101,flu_00102,2014-07-22 to 2014-07-22,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes,2014_10_15_2 +102,flu_00103,2015-05-15 to 2015-05-15,H5N8 subtype,"Whitley County (admin level 2), Indiana (admin level 1)",United States of America,Aves; Gallus gallus; Anas; Galliformes,2015_05_15_5 +103,flu_00104,2016-02-08 to 2016-02-08,Influenza A virus,Guangdong (admin level 1),People's Republic of China,Gallus gallus,2016_02_08_2 +104,flu_00105,2013-05-30 to 2013-05-30,H7N9 subtype,Bar Municipality (admin level 1); Beijing (admin level 1),Montenegro,Homo sapiens,2013_05_30_4 +105,flu_00106,2017-07-05 to 2017-07-06,H3N8 subtype,United States of America (country),United States of America,Aves; Homo sapiens,2017_07_05_1; 2017_07_14_1 +106,flu_00107,2010-04-17 to 2010-04-25,H5N1 subtype,"Apriltsi Municipality (admin level 2), Lovech Province (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Galliformes,2010_05_28_2; 2010_05_04_1 +107,flu_00108,2008-06-13 to 2008-08-01,H5N1 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2008_08_01_2; 2008_06_19_4; 2008_06_13_1; 2008_06_19_2; 2008_06_26_2; 2011_12_22_3 +108,flu_00109,2011-02-16 to 2011-03-15,H5N1 subtype,"Bhopal district (admin level 2), Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Tripura (admin level 1); Kolkata district (admin level 2), West Bengal (admin level 1)",India,Aves; Galliformes; Anas,2011_03_22_2; 2011_02_22_4; 2011_03_15_3 +109,flu_00110,2015-04-17 to 2015-05-15,H5N2 subtype,Taichung (admin level 1),Taiwan,Aves; Anas,2015_05_15_3; 2015_04_17_5 +110,flu_00111,2010-02-26 to 2010-03-09,H5N1 subtype,"Jongtchong-gu (admin level 2), Suwon (admin level 1)",South Korea,Aves; Sus scrofa; Gallus gallus; Anas; Galliformes,2010_03_09_2 +111,flu_00112,2016-10-28 to 2016-12-07,H5N8 subtype,"West Pomeranian Voivodeship (admin level 1); Prasia Elysiorum (admin level 2), Lubusz Voivodeship (admin level 1)",Poland,Aves; Gallus gallus; Anas; Galliformes,2016_11_15_6; 2016_12_01_5; 2016_12_29_6 +112,flu_00113,2016-11-09 to 2016-12-13,H5N8 subtype,Austria (country),Austria,Aves,2016_11_15_9; 2016_12_13_1 +113,flu_00114,2009-12-11 to 2010-01-20,H5N1 subtype,"Kompung Chinang (admin level 2), Kampong Chhnang Province (admin level 1); Ponhea Kraek District (admin level 2), Kampong Cham Province (admin level 1)",Cambodia,Aves; Homo sapiens,2010_01_20_1; 2009_12_22_3 +114,flu_00115,2015-05-11 to 2015-05-11,H5N1 subtype,Kastamonu Vilayet (admin level 1),Ottoman Empire,Gallus gallus; Galliformes,2015_05_11_3 +115,flu_00116,2011-04-05 to 2011-04-05,H7N1 subtype,"Schoren (admin level 2), Canton of Bern (admin level 1)",Switzerland,Aves; Galliformes,2011_04_05_4 +116,flu_00117,2017-03-03 to 2017-03-30,Influenza A virus,South Chungcheong Province (admin level 1),South Korea,Aves; Gallus gallus; Anas,2017_03_03_5; 2017_05_12_7; 2017_03_08_7 +117,flu_00118,2011-11-17 to 2011-11-17,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes,2011_11_17_7 +118,flu_00119,2016-01-16 to 2016-01-19,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Galliformes; Homo sapiens,2016_01_22_11; 2016_01_22_10 +119,flu_00120,2011-05-18 to 2011-06-19,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes; Homo sapiens,2011_06_20_4; 2011_05_18_1 +120,flu_00121,2009-03-17 to 2009-03-30,H5N1 subtype,Aichi Prefecture (admin level 1),Japan,Aves; Galliformes; Homo sapiens,2009_03_17_5; 2009_03_30_3 +121,flu_00122,2012-03-17 to 2012-03-19,H5N2 subtype,Waterschap Limburg (admin level 1),Netherlands,Aves; Galliformes,2012_03_23_4 +122,flu_00123,2016-05-07 to 2016-07-24,H5N1 subtype,Al Sharqia Governorate (admin level 1); Giza Governorate (admin level 1); Cairo Governorate (admin level 1); Qena Governorate (admin level 1),Egypt,Aves; Gallus gallus; Anas; Homo sapiens,2016_05_20_1; 2016_07_12_6; 2016_06_24_3; 2016_10_17_6 +123,flu_00124,2011-04-05 to 2011-04-05,H7N3 subtype,"Missouri (admin level 1); Polk County (admin level 2), Iowa (admin level 1)",United States of America,Phasianidae; Aves; Galliformes,2011_04_05_5 +124,flu_00125,2009-06-24 to 2009-06-24,H1N1 subtype,Buenos Aires Province (admin level 1),Argentina,Sus scrofa,2009_07_21_1 +125,flu_00126,2010-11-02 to 2010-11-02,H5N1 subtype,Connecticut (admin level 1),United States of America,Homo sapiens,2010_11_05_2 +126,flu_00127,2013-10-28 to 2013-11-01,H5N1 subtype,West Java Province (admin level 1),Indonesia,Gallus gallus; Homo sapiens,2013_10_28_3; 2013_11_26_2 +127,flu_00128,2016-11-04 to 2016-12-12,H5N8 subtype,"Oberhofen bei Kreuzlingen (admin level 2), Thurgau (admin level 1); Stansstad (admin level 2), Nidwalden (admin level 1); Belmont-sur-Lausanne (admin level 2), Lavaux-Oron District (admin level 1); Canton of Neuchâtel (admin level 1)",Switzerland,Aves; Chroicocephalus ridibundus; Galliformes; Anas platyrhynchos; Cepora; Laridae; Anas,2016_11_18_6; 2016_12_13_10; 2016_11_15_8 +128,flu_00129,2010-02-19 to 2010-03-11,H5N1 subtype,Yangon Region (admin level 1); Sagaing Region (admin level 1),Myanmar,Aves; Gallus gallus; Galliformes; Anas,2010_03_11_2; 2010_03_09_3 +129,flu_00130,2013-01-18 to 2013-03-01,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves,2013_01_18_3; 2013_05_13_2 +130,flu_00131,2012-05-22 to 2012-05-22,H5N1 subtype,Tripura (admin level 1),India,Aves; Galliformes,2012_05_22_1 +131,flu_00132,2010-09-10 to 2010-09-10,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Aves,2010_09_10_1 +132,flu_00133,2008-03-28 to 2008-03-28,H5N1 subtype,Canton of Lucerne (admin level 1),Switzerland,Aves,2008_03_28_1 +133,flu_00134,2007-09-26 to 2007-09-26,H5N1 subtype,Nigeria (country),Nigeria,Galliformes,2008_08_15_2 +134,flu_00135,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves; Sus scrofa,2006_12_01_1 +135,flu_00136,2014-12-16 to 2014-12-29,H5N2 subtype,British Columbia (admin level 1),Canada,Aves; Gallus gallus; Galliformes; Homo sapiens,2014_12_16_2; 2014_12_29_3; 2014_12_23_1 +136,flu_00137,2015-01-30 to 2015-03-27,H5N1 subtype,"Obshtina Iskŭr (munisipyo sa Bulgaria) (admin level 2), Pleven Province (admin level 1); Burgas Province (admin level 1); Silistra Province (admin level 1); Burgas (city)",Bulgaria,Aves; Pelecanus crispus; Chroicocephalus ridibundus; Pelecanidae; Galliformes,2015_03_27_1; 2015_01_30_1 +137,flu_00138,2007-02-26 to 2007-06-15,H5N1 subtype,"Dinajpur District, Bangladesh (admin level 2), Rangpur Division (admin level 1); Naogaon District (admin level 2), Rajshahi Division (admin level 1); distretto de Magura (admin level 2), Khulna Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Columbidae; Galliformes; Homo sapiens; Gallus gallus; Anas,2009_01_14_2; 2008_10_24_2; 2007_05_11_2; 2007_06_15_2; 2007_05_03_3; 2007_04_02_3; 2008_01_18_3; 2007_06_22_3 +138,flu_00139,2008-01-04 to 2008-02-23,H5N1 subtype,"Barisal Division (admin level 1); Natore District (admin level 2), Rajshahi Division (admin level 1); Dakshin Dinajpur district (admin level 2), West Bengal (admin level 1); Chittagong (admin level 2), Chattogram Division (admin level 1); Mymensingh Division (admin level 1); Distrik Jessore (admin level 2), Khulna Division (admin level 1); Meherpur (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Columbidae; Podiceps nigricollis; Corvus; Galliformes; Gallus gallus; Anas,2008_02_08_4; 2008_02_08_2; 2008_02_01_1; 2008_01_18_3; 2008_02_20_2; 2008_01_25_2; 2008_01_10_3; 2008_03_03_2 +139,flu_00140,2005-12-26 to 2005-12-26,H5N1 subtype,Hunan (admin level 1),People's Republic of China,Gallus gallus; Anas,2008_06_06_1 +140,flu_00141,2008-10-02 to 2008-11-14,H5N1 subtype,"Uthai Thani (admin level 1); Sawankhalok (admin level 1); Sukhothai (admin level 1); Amphoe Thung Saliam (admin level 2), Sukhothai (admin level 1); Pho Prathap Chang (admin level 2), Phichit (admin level 1)",Thailand,Aves; Gallus gallus; Anas; Homo sapiens,2008_11_07_4; 2008_11_14_2; 2008_10_02_3 +141,flu_00142,2010-06-29 to 2010-06-29,H5N1 subtype,Tuva (admin level 1),Russia,Aves; Podiceps cristatus,2010_06_29_1 +142,flu_00143,2014-03-28 to 2014-03-28,H5N1 subtype,"Distrik Jessore (admin level 2), Khulna Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes,2014_04_10_1 +143,flu_00144,2011-01-29 to 2011-02-12,H5N1 subtype,"Banteay Meanchey Province (admin level 1); Russei Keo District (admin level 2), Phnom Penh (admin level 1); Kandal Province (admin level 1)",Cambodia,Galliformes; Gallus gallus; Homo sapiens,2011_02_11_8; 2011_02_11_4; 2011_02_28_5 +144,flu_00145,2008-08-28 to 2008-08-28,H5N1 subtype,"Parakou (admin level 2), Borgou Department (admin level 1); Lokossa (admin level 2), Mono Department (admin level 1)",Benin,Galliformes; Gallus gallus,2008_08_28_2 +145,flu_00146,2009-01-20 to 2009-02-23,H5N1 subtype,British Columbia (admin level 1),Canada,Aves; Galliformes; Homo sapiens,2009_02_23_5; 2009_01_30_2 +146,flu_00147,2007-07-03 to 2007-07-17,H5N1 subtype,Siberia; Buryatia (admin level 1); Tomsk Oblast (admin level 1),Russia,Aves; Galliformes,2007_07_05_3; 2007_07_20_2 +147,flu_00148,2008-06-19 to 2008-09-22,H5N1 subtype,"Long An (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Ben Tre (admin level 1)",Vietnam,Galliformes; Anas; Gallus gallus; Aves; Homo sapiens,2008_08_11_4; 2008_08_22_2; 2008_07_18_2; 2008_06_19_3; 2008_10_02_2; 2008_08_15_4 +148,flu_00149,2015-08-24 to 2015-12-04,H5N1 subtype,Vietnam (country),Vietnam,Aves,2015_08_24_7; 2015_10_16_4; 2015_09_04_3; 2015_09_30_5; 2015_12_04_4 +149,flu_00150,2007-11-04 to 2007-11-04,H5N1 subtype,Fukui Prefecture (admin level 1),Japan,Aves; Galliformes,2007_02_16_3 +150,flu_00151,2014-11-25 to 2015-01-08,Influenza A virus,Miyazaki Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2015_01_08_5; 2014_11_25_1 +151,flu_00152,2011-06-29 to 2011-11-17,H5N1 subtype,"Minnesota (admin level 1); Hong Kong (admin level 1); Maine (admin level 1); Wright County (admin level 2), Iowa (admin level 1)",United States of America,Aves; Galliformes; Homo sapiens,2011_08_11_3; 2011_09_30_1; 2011_11_17_1; 2011_07_06_4 +152,flu_00153,2015-08-07 to 2015-08-24,H5N1 subtype,State of Palestine (country),State of Palestine,Aves; Homo sapiens,2015_08_24_6; 2015_08_07_6 +153,flu_00154,2010-03-29 to 2010-03-29,H5N1 subtype,Varna Province (admin level 1),Bulgaria,Aves,2010_04_02_1 +154,flu_00155,2012-08-30 to 2012-08-30,H5N1 subtype,"North 24 Parganas district (admin level 2), West Bengal (admin level 1)",India,Galliformes; Gallus gallus; Aves,2012_08_30_1 +155,flu_00156,2015-06-10 to 2015-06-10,Influenza A virus,"Gangjin (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1)",South Korea,Aves; Galliformes; Anas,2015_09_18_1 +156,flu_00157,2008-04-30 to 2008-04-30,H5N1 subtype,"Shpola Raion (admin level 2), Cherkasy Oblast (admin level 1)",Ukraine,Aves; Gallus gallus; Homo sapiens,2008_04_30_4 +157,flu_00158,2007-08-14 to 2007-11-01,H5N1 subtype,"West Jakarta (admin level 2), Jakarta (admin level 1); Jakarta (admin level 1); Tangerang Selatan (admin level 2), Banten Province (admin level 1); Bogor Regency (admin level 2), West Java Province (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1)",Indonesia,Galliformes; Gallus gallus; Anas; Homo sapiens,2007_10_05_3; 2007_08_14_2; 2007_11_01_4; 2012_02_02_8 +158,flu_00159,2013-05-01 to 2013-06-17,H7N3 subtype,"Guanajuato (admin level 1); Palmar de Bravo Municipality (admin level 2), Puebla (admin level 1); Puebla (admin level 1); Jalisco (admin level 1); Aguascalientes (admin level 1)",Mexico,Aves; Galliformes; Homo sapiens,2013_06_17_2; 2013_05_23_1; 2013_05_13_2 +159,flu_00160,2014-01-01 to 2014-01-01,H9N2 subtype,"Hong Kong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1)",People's Republic of China,Homo sapiens,2014_01_09_9 +160,flu_00161,2008-07-25 to 2008-09-08,H5N1 subtype,"New London County, Connecticut (admin level 2), Connecticut (admin level 1); California (admin level 1); La Crosse County (admin level 2), Wisconsin (admin level 1); Idaho (admin level 1)",United States of America,Galliformes; Gallus gallus; Aves; Homo sapiens,2008_09_08_2; 2008_09_08_4; 2008_07_25_5 +161,flu_00162,2008-03-31 to 2008-05-12,H5N1 subtype,"South Gyeongsang Province (admin level 1); Santa Terezinha do Progresso (admin level 2), Santa Catarina (admin level 1); Jeonju (admin level 2), North Jeolla Province (admin level 1); Busan (admin level 1); Seoul (admin level 1); Daegu (admin level 1); Gimje (admin level 2), North Jeolla Province (admin level 1); Seongnam (admin level 2), Gyeonggi Province (admin level 1); Naju (admin level 2), South Jeolla Province (admin level 1)",South Korea,Aves; Gallus gallus; Galliformes; Anas,2008_04_18_3; 2008_05_02_4; 2008_04_15_3; 2008_07_25_1; 2008_05_16_3; 2008_05_09_2 +162,flu_00163,2010-03-27 to 2010-03-27,H5N1 subtype,Tulcea County (admin level 1),Romania,Aves; Gallus gallus; Galliformes,2010_04_02_3 +163,flu_00164,2011-04-21 to 2011-06-07,H5N1 subtype,Phnom Penh (admin level 2); Prey Veng Province (admin level 1),Cambodia,Galliformes; Homo sapiens,2011_04_28_7; 2011_06_20_5 +164,flu_00165,2008-06-03 to 2008-06-03,H5N1 subtype,"Aomori Prefecture (admin level 1); Apriltsi Municipality (admin level 2), Lovech Province (admin level 1)",Bulgaria,Aves,2008_06_06_2 +165,flu_00166,2007-06-12 to 2007-11-01,H5N1 subtype,"Hoang Mai (admin level 2), Hanoi (admin level 1); Cao Bang (admin level 1); Tra Vinh (admin level 2), Trà Vinh (admin level 1); Thai Binh illoqarfik (admin level 2), Thái Bình (admin level 1)",Vietnam,Aves; Gallus gallus; Galliformes; Anas,2007_10_29_4; 2007_08_17_3; 2007_06_12_4; 2007_09_04_3; 2007_07_27_3; 2007_11_01_3 +166,flu_00167,2008-10-24 to 2008-10-24,H5N3 subtype,"Leipzig District (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1)",Germany,Aves; Galliformes; Anas,2008_10_24_3 +167,flu_00168,2010-06-29 to 2010-08-18,H5N1 subtype,"Rajshahi Division (admin level 1); Narayanganj District (admin level 2), Dhaka Division (admin level 1)",Bangladesh,Gallus gallus; Galliformes; Anas; Sus scrofa,2010_08_16_3; 2010_06_29_2; 2010_08_18_3 +168,flu_00169,2009-08-29 to 2009-08-29,H5N1 subtype,"distretto de Chittagong (admin level 2), Chattogram Division (admin level 1)",Bangladesh,Galliformes,2009_09_25_2 +169,flu_00170,2014-12-20 to 2015-2-2,H5N8 subtype,"Clark County (admin level 2), Kansas (admin level 1); Baja California Sur (admin level 1); Oregon (admin level 1); Kings County (admin level 2), New York (admin level 1); Winston County (admin level 2), Mississippi (admin level 1); Deschutes County (admin level 2), Oregon (admin level 1); Grays Harbor County (admin level 2), Washington (admin level 1); Washington (admin level 1); California (admin level 1); Canyon County (admin level 2), Idaho (admin level 1); Nevada (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Anas; Mareca americana,2015_02_23_6; 2015_02_06_9; 2015_01_16_1; 2015_03_02_3; 2014_12_29_4; 2015_02_23_7; 2015_03_06_1; 2014_12_23_3 +170,flu_00171,2011-09-17 to 2011-09-17,H5N1 subtype,"Mahalapye (admin level 2), Central District (admin level 1)",Botswana,Homo sapiens,2011_11_17_8 +171,flu_00172,2016-11-07 to 2016-12-19,H5N8 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Sus scrofa; Galliformes; Homo sapiens,2016_12_06_16; 2016_12_29_8 +172,flu_00173,2013-10-28 to 2013-10-28,H7N2 subtype,New South Wales (admin level 1),Australia,Galliformes; Gallus gallus; Anas,2013_10_28_7; 2013_10_28_2 +173,flu_00174,2012-01-16 to 2012-03-07,H5N1 subtype,"Ho Chi Minh City (admin level 1); Bac Lieu (admin level 1); Ha Tinh (admin level 1); Tra Vinh (admin level 2), Trà Vinh (admin level 1); Kien Giang (admin level 1); Thanh Hoa (admin level 2), Thanh Hóa (admin level 1)",Vietnam,Aves; Galliformes; Homo sapiens,2012_02_29_4; 2012_03_12_6; 2012_02_22_5; 2012_02_02_16 +174,flu_00175,2014-08-12 to 2014-09-30,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); District de Thanh Xuan (admin level 2), Hanoi (admin level 1); Ha Tinh (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Lao Cai (admin level 1)",Vietnam,Aves; Galliformes; Gallus gallus; Anas; Homo sapiens,2014_09_30_3; 2014_09_10_1; 2014_08_15_1; 2014_08_29_1 +175,flu_00176,2008-03-03 to 2008-03-16,H5N1 subtype,"Ninh Binh (admin level 2), Ninh Bình (admin level 1); Ca Mau (admin level 1)",Vietnam,Aves; Gallus gallus; Galliformes; Paradoxurus hermaphroditus; Anas,2008_03_14_2; 2008_03_28_3 +176,flu_00177,2007-09-27 to 2007-09-27,H7N3 subtype,Saskatchewan (admin level 1),Canada,Gallus gallus; Galliformes; Homo sapiens,2007_09_28_2; 2007_10_05_2 +177,flu_00178,2006-03-26 to 2006-03-26,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Galliformes; Gallus gallus; Homo sapiens,2008_06_02_3 +178,flu_00179,2010-05-28 to 2010-05-28,H5N1 subtype,"Zeeland (Noord-Brabant) (admin level 2), Landerd (admin level 1)",Netherlands,Galliformes; Gallus gallus; Aves,2010_05_28_8 +179,flu_00180,2015-11-09 to 2015-11-09,H5N8 subtype,Siberia,Russia,Aves; Gallus gallus; Anas; Galliformes,2015_11_09_1 +180,flu_00181,2014-12-23 to 2015-01-07,H5N8 subtype,Germany (country),Germany,Aves; Galliformes,2015_01_08_2; 2014_12_23_2 +181,flu_00182,2015-03-27 to 2015-03-27,H5N2 subtype,"Semnan Province (admin level 1); Pope County (Minnesota) (admin level 2), Minnesota (admin level 1)",Iran,Aves,2015_03_27_7 +182,flu_00183,2013-02-22 to 2013-02-22,H5N1 subtype,Guanajuato (admin level 1),Mexico,Galliformes; Gallus gallus; Anas,2013_02_22_1 +183,flu_00184,2007-02-16 to 2007-02-16,H5N1 subtype,Orenburg Oblast (admin level 1),Russia,Aves,2007_02_16_4 +184,flu_00185,2014-04-22 to 2014-05-07,H5N6 subtype,Sichuan (admin level 1),People's Republic of China,Aves; Galliformes; Homo sapiens,2014_05_12_5 +185,flu_00186,2017-05-05 to 2017-05-05,H5N8 subtype,England (admin level 1),United Kingdom,Aves; Gallus gallus,2017_05_12_11 +186,flu_00187,2011-06-22 to 2011-06-22,H5N1 subtype,North Rhine-Westphalia (admin level 1); Lower Saxony (admin level 1),Germany,Aves,2011_07_06_2 +187,flu_00188,2012-12-14 to 2012-12-26,H5N1 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Galliformes,2014_10_06_1; 2012_12_14_1 +188,flu_00189,2014-10-06 to 2014-10-06,H5N1 subtype,Altai Krai (admin level 1),Russia,Aves; Gallus gallus; Anas,2014_10_06_1 +189,flu_00190,2013-06-28 to 2013-06-28,H7N7 subtype,Lower Saxony (admin level 1),Germany,Aves; Galliformes,2013_06_28_1 +190,flu_00191,2007-07-27 to 2007-07-27,H5N1 subtype,Manipur (admin level 1),India,Galliformes,2007_07_27_2 +191,flu_00192,2013-05-23 to 2013-05-23,H5N1 subtype,Lower Saxony (admin level 1),Germany,Aves; Galliformes; Homo sapiens,2013_05_23_5 +192,flu_00193,2011-09-14 to 2011-09-26,H5N1 subtype,Jharkhand (admin level 1); West Bengal (admin level 1),India,Aves; Galliformes; Anas,2011_12_16_1; 2011_09_23_3 +193,flu_00194,2007-11-14 to 2007-11-14,H5N1 subtype,Riyadh Region (admin level 1),Saudi Arabia,Galliformes; Gallus gallus; Aves,2007_11_23_2 +194,flu_00195,2016-06-07 to 2016-06-19,H9N2 subtype,People's Republic of China (country),People's Republic of China,Aves; Gallus gallus; Homo sapiens,2016_06_07_1; 2016_06_24_6 +195,flu_00196,2015-06-19 to 2015-07-31,H7N7 subtype,Germany (country),Germany,Aves; Gallus gallus; Homo sapiens,2015_07_31_1; 2015_06_19_1 +196,flu_00197,2007-11-29 to 2007-11-29,H5N1 subtype,"Suffolk County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves,2007_12_07_1 +197,flu_00198,2016-01-22 to 2016-01-22,H5N2 subtype,Kaohsiung City (admin level 1),Taiwan,Aves; Galliformes,2016_01_22_5 +198,flu_00199,2008-03-07 to 2008-03-07,H5N1 subtype,Basra Vilayet (admin level 1),Iraq,Galliformes,2008_03_07_3 +199,flu_00200,2012-01-18 to 2012-01-18,H5N1 subtype,Banteay Meanchey Province (admin level 1),Cambodia,Gallus gallus; Galliformes; Homo sapiens,2012_02_02_14 +200,flu_00201,2006-12-15 to 2006-12-15,H5N1 subtype,Little India (admin level 2),Singapore,Aves; Passeridae; Columbidae; Anser,2006_12_15_1 +201,flu_00202,2016-10-22 to 2016-11-4,H5N8 subtype,"Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Punjab (admin level 1); Delhi (admin level 1); Alappuzha (admin level 2), Kerala (admin level 1); Madhya Pradesh (admin level 1)",India,Aves; Ciconiidae; Galliformes; Gallus gallus; Anas,2016_11_07_3; 2016_11_15_12 +202,flu_00203,2011-09-23 to 2011-09-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Galliformes; Homo sapiens,2011_09_23_1 +203,flu_00204,2015-03-31 to 2015-03-31,H5N1 subtype,"Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Homo sapiens,2015_04_03_9 +204,flu_00205,2009-10-07 to 2009-11-16,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Nan (admin level 1)",Thailand,Aves; Galliformes; Anas,2009_11_20_6 +205,flu_00206,2015-01-08 to 2015-01-30,H5N1 subtype,Nigeria (country),Nigeria,Aves,2015_01_30_3; 2015_01_23_6 +206,flu_00207,2011-12-13 to 2011-12-16,H5N1 subtype,"Katchiungo (admin level 2), Huambo Province (admin level 1); Hong Kong (admin level 1)",Angola,Aves; Chroicocephalus ridibundus,2011_12_22_1 +207,flu_00208,2007-04-06 to 2007-04-06,H5N1 subtype,Kampong Cham Province (admin level 1),Cambodia,Aves; Gallus gallus; Anas; Homo sapiens,2007_04_23_2 +208,flu_00209,2017-03-06 to 2017-03-06,H5N8 subtype,Vienna (admin level 1),Austria,Pelecanidae,2017_03_22_1 +209,flu_00210,2012-11-15 to 2012-11-15,H5N1 subtype,New South Wales (admin level 1),Australia,Aves; Gallus gallus; Homo sapiens,2012_11_15_3 +210,flu_00211,2016-11-21 to 2016-11-23,H5N1 subtype,Kano State (admin level 1); Bauchi State (admin level 1),Nigeria,Gallus gallus; Anas,2016_12_06_15 +211,flu_00212,2008-10-15 to 2008-10-15,H5N1 subtype,"Lower Saxony (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1)",Germany,Aves; Galliformes,2008_10_16_2 +212,flu_00213,2009-11-06 to 2009-11-06,H1N1 subtype,Hong Kong (admin level 1),People's Republic of China,Sus scrofa,2009_11_06_4 +213,flu_00214,2008-08-27 to 2008-09-18,H5N1 subtype,Luang Prabang Province (admin level 1),Laos,Aves; Galliformes; Anas; Homo sapiens,2008_09_11_2; 2008_09_18_2 +214,flu_00215,2009-08-06 to 2009-08-06,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves; Anser,2009_08_28_1 +215,flu_00216,2008-03-07 to 2008-03-07,H5N1 subtype,Phatthalung (admin level 1),Thailand,Galliformes; Anas,2008_03_07_4 +216,flu_00217,2017-01-03 to 2017-02-07,H5N8 subtype,Wales (admin level 1),United Kingdom,Aves; Galliformes; Gallus gallus; Anas platyrhynchos; Anas,2017_01_10_20; 2017_02_07_14 +217,flu_00218,2016-09-09 to 2017-01-10,H5N6 subtype,Hunan (admin level 1); Hong Kong (admin level 1),People's Republic of China,Aves; Gallus gallus; Galliformes; Homo sapiens,2016_09_09_1; 2016_12_01_11; 2016_10_17_2; 2017_01_10_10; 2016_12_06_20 +218,flu_00219,2010-12-09 to 2010-12-09,H5N1 subtype,Samukh District (admin level 1),Azerbaijan,Aves; Galliformes,2010_12_09_2 +219,flu_00220,2015-06-26 to 2015-06-26,H5N1 subtype,Sohag Governorate (admin level 1),Egypt,Homo sapiens,2015_06_26_5 +220,flu_00221,2015-11-18 to 2015-11-18,Influenza A virus,Oregon (admin level 1),United States of America,Aves; Galliformes; Metazoa,2015_12_16_1 +221,flu_00222,2013-05-31 to 2013-05-31,Influenza A virus,County of Viborg and Nyslott (admin level 1),Swedish Empire,Aves; Ciconiidae; Galliformes; Anas,2013_06_07_2 +222,flu_00223,2016-10-21 to 2016-10-21,H5N1 subtype,"Gwalior (admin level 2), Madhya Pradesh (admin level 1); South Delhi (admin level 2), Delhi (admin level 1); Delhi (admin level 1)",India,Aves; Ciconiidae,2016_10_21_2 +223,flu_00224,2016-12-26 to 2017-02-07,H5N1 subtype,Odisha (admin level 1); Andaman and Nicobar Islands (admin level 1),India,Aves; Gallus gallus; Galliformes; Anas,2017_01_10_11; 2017_01_13_4 +224,flu_00225,2014-12-06 to 2014-12-06,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Galliformes; Homo sapiens,2014_02_07_4 +225,flu_00226,2014-07-25 to 2014-07-25,H5N8 subtype,"Hampyeong County (admin level 2), South Jeolla Province (admin level 1); Hampyeong (admin level 2), South Jeolla Province (admin level 1)",South Korea,Gallus gallus; Galliformes; Anas,2014_08_01_1 +226,flu_00227,2006-12-06 to 2006-12-20,H5N1 subtype,Bac Lieu (admin level 1); Ca Mau (admin level 1),Vietnam,Aves; Gallus gallus; Anas; Galliformes,2006_12_22_2; 2007_01_08_3 +227,flu_00228,2007-03-23 to 2007-03-23,H5N1 subtype,Punjab (admin level 1),Pakistan,Corvus; Gallus gallus,2007_03_23_2 +228,flu_00229,2017-02-20 to 2017-02-20,H5N8 subtype,Catalonia (admin level 1),Spain,Galliformes; Ciconia ciconia; Anser; Aves,2017_03_03_1 +229,flu_00230,2007-01-04 to 2007-02-07,H5N1 subtype,Kumamoto Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes; Anas,2007_03_23_1; 2007_02_07_2 +230,flu_00231,2011-11-17 to 2011-11-17,H5N1 subtype,Battambang Province (admin level 1),Cambodia,Gallus gallus; Galliformes; Anser; Anas,2011_11_17_3 +231,flu_00232,2010-05-17 to 2010-05-28,H5N1 subtype,"West Bank (admin level 1); Tulkarm Governorate (admin level 2), West Bank (admin level 1)",Israel,Aves; Gallus gallus; Galliformes,2010_05_17_4; 2010_05_28_6 +232,flu_00233,2008-01-10 to 2008-01-10,H5N1 subtype,England (admin level 1),United Kingdom,Cygnus; Anas; Homo sapiens,2008_01_10_2 +233,flu_00234,2009-03-04 to 2009-03-04,H7N6 subtype,Aichi Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2009_03_10_3 +234,flu_00235,2014-01-02 to 2014-03-20,H5N1 subtype,Hubei (admin level 1),People's Republic of China,Galliformes; Gallus gallus; Aves,2014_02_19_8; 2014_01_22_3; 2014_01_09_2; 2014_03_20_2 +235,flu_00236,2015-12-18 to 2016-02-08,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Aves; Galliformes; Gallus gallus; Anas,2015_12_18_4; 2016_02_08_6; 2016_01_08_5 +236,flu_00237,2016-07-19 to 2016-07-19,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Gallus gallus; Anser,2016_07_19_4 +237,flu_00238,2011-08-14 to 2011-08-14,H5N1 subtype,Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Anas,2011_08_19_1 +238,flu_00239,2009-12-3 to 2009-12-3,H1N1 subtype,Sicily (admin level 1),Italy,Sus scrofa,2010_01_20_7 +239,flu_00240,2016-04-20 to 2016-06-20,H5N2 subtype,Taipei (admin level 1); Taichung (admin level 1),Taiwan,Gallus gallus; Galliformes,2016_06_24_5; 2016_04_20_3; 2016_05_20_6 +240,flu_00241,2008-04-08 to 2008-07-25,H5N1 subtype,"Primorsky Krai (admin level 1); Perm Krai (admin level 1); Republic of Crimea (admin level 1); Altai Krai (admin level 1); Ural Oblast (admin level 2), Russian Republic (admin level 1)",Russia,Aves; Gallus gallus; Galliformes; Anas,2008_06_02_1; 2008_07_25_2; 2008_04_18_2 +241,flu_00242,2013-02-22 to 2013-02-22,H5N1 subtype,Brandenburg (admin level 1),Germany,Gallus gallus; Galliformes,2013_02_22_2 +242,flu_00243,2008-09-11 to 2008-09-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Aves; Gallus gallus; Galliformes,2008_09_11_3 +243,flu_00244,2016-11-15 to 2016-12-20,H5N6 subtype,Akita Prefecture (admin level 1),Japan,Aves; Cygnus atratus; Homo sapiens,2016_12_01_3; 2016_12_20_3 +244,flu_00245,2013-07-15 to 2013-07-15,H7N7 subtype,Saint George Parish (admin level 1),Dominica,Aves; Galliformes; Homo sapiens,2013_07_15_2 +245,flu_00246,2013-04-19 to 2013-04-26,H5N1 subtype,Cairo Governorate (admin level 1),Egypt,Galliformes; Gallus gallus; Anas; Homo sapiens,2013_04_19_3; 2014_02_19_9 +246,flu_00247,2015-05-22 to 2015-07-08,H5N1 subtype,Istanbul Province (admin level 1),Turkey,Aves; Galliformes; Metazoa,2015_07_08_1; 2015_05_22_4 +247,flu_00248,2014-12-29 to 2014-12-29,H5N6 subtype,"Vinh Long City (admin level 2), Vĩnh Long (admin level 1); Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Galliformes,2014_12_29_7 +248,flu_00249,2015-11-09 to 2015-11-09,H5N1 subtype,South Jeolla Province (admin level 1),South Korea,Aves,2015_11_09_3 +249,flu_00250,2011-03-16 to 2011-03-29,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus; Galliformes,2011_03_29_6 +250,flu_00251,2014-02-06 to 2014-02-06,H5N1 subtype,Odisha (admin level 1); Orissa (admin level 1),India,Corvus; Corvus splendens; Galliformes,2014_03_07_9 +251,flu_00252,2013-03-01 to 2013-03-18,H5N1 subtype,"Purnia (admin level 2), Bihar (admin level 1); Khordha (admin level 2), Odisha (admin level 1); Odisha (admin level 1); Ganjam (admin level 2), Odisha (admin level 1); distretto di Madhepura (admin level 2), Bihar (admin level 1); Lakhimpurin piirikunta (admin level 2), Assam (admin level 1)",India,Aves; Gallus gallus; Galliformes,2013_03_01_1; 2013_03_18_2 +252,flu_00253,2016-04-30 to 2016-04-30,H5N1 subtype,"Jasper County (admin level 2), Illinois (admin level 1); Missouri (admin level 1)",United States of America,Aves,2016_05_06_5 +253,flu_00254,2007-08-11 to 2007-08-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Aves; Gallus gallus; Galliformes,2007_08_17_2 +254,flu_00255,2014-08-29 to 2014-09-30,Influenza A virus,"Berks County (admin level 2), Pennsylvania (admin level 1)",United States of America,Aves; Anas; Homo sapiens,2014_08_29_2; 2014_09_30_1 +255,flu_00256,2017-03-22 to 2017-03-22,H5N1 subtype,"Tây Ninh (admin level 2), Tay Ninh Province (admin level 1)",Vietnam,Aves; Galliformes,2017_03_22_13 +256,flu_00257,2016-11-12 to 2016-11-12,H5N8 subtype,Åland Islands (admin level 1),Finland,Aves; Galliformes; Anas,2016_12_06_2 +257,flu_00258,2008-01-04 to 2008-01-04,H5N1 subtype,"Dangbo (admin level 2), Ouémé Department (admin level 1)",Benin,Gallus gallus; Anas,2008_01_04_4 +258,flu_00259,2017-05-22 to 2017-05-22,H5N5 subtype,Netherlands (country),Netherlands,Aves; Anser; Homo sapiens,2017_05_30_1; 2017_06_06_1 +259,flu_00260,2015-04-02 to 2015-04-02,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves; Galliformes; Homo sapiens,2015_04_03_7 +260,flu_00261,2010-11-16 to 2010-11-22,H5N1 subtype,"Nam Dinh (admin level 2), Nam Định (admin level 1)",Vietnam,Aves; Galliformes; Anas,2010_12_03_4 +261,flu_00262,2017-11-22 to 2017-11-22,H7N9 subtype,Fujian (admin level 1); Jiangsu (admin level 1); Zhejiang (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2017_01_10_21 +262,flu_00263,2016-01-11 to 2016-01-11,H5N1 subtype,Scotland (admin level 1),United Kingdom,Aves; Gallus gallus; Galliformes,2016_01_15_4 +263,flu_00264,2015-04-03 to 2015-04-03,H5N6 subtype,Jiangsu (admin level 1),People's Republic of China,Aves; Anser,2015_04_03_5 +264,flu_00265,2016-05-10 to 2016-05-10,H5N1 subtype,"distretto di Chhouk (admin level 2), Kampot Province (admin level 1); Kampot Province (admin level 1)",Cambodia,Gallus gallus; Homo sapiens,2016_05_20_5 +265,flu_00266,2011-05-26 to 2011-05-26,H5N8 subtype,"Gochang (admin level 2), North Jeolla Province (admin level 1)",South Korea,Aves; Galliformes,2014_01_22_4 +266,flu_00267,2017-03-08 to 2017-03-22,H7N9 subtype,"Tennessee (admin level 1); Giles County (admin level 2), Virginia (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Homo sapiens,2017_03_22_10; 2017_03_08_13; 2017_03_22_11 +267,flu_00268,2015-01-16 to 2015-01-16,H5N8 subtype,"Fujian Province, Republic of China (admin level 1)",Taiwan,Aves; Anser; Galliformes; Homo sapiens; Gallus gallus; Anas,2015_01_16_3 +268,flu_00269,2007-05-30 to 2007-05-30,H5N1 subtype,Zamfara State (admin level 1),Nigeria,Aves; Galliformes; Anas,2007_05_30_4 +269,flu_00270,2016-04-13 to 2016-04-13,H5N9 subtype,Veliko Tarnovo Province (admin level 1),Bulgaria,Gallus gallus; Galliformes; Anas; Homo sapiens,2016_04_26_2 +270,flu_00271,2011-04-14 to 2011-04-14,H5N1 subtype,Sükhbaatar Province (admin level 1),Mongolia,Aves; Cygnus cygnus,2011_04_28_1 +271,flu_00272,2012-06-29 to 2012-07-03,Influenza A virus,"Karawang (admin level 2), West Java Province (admin level 1)",Indonesia,Gallus gallus; Homo sapiens,2012_07_24_4 +272,flu_00273,2015-04-01 to 2015-04-01,H5N1 subtype,"Kadiogo (admin level 2), Centre Region, Burkina Faso (admin level 1); Sanguié (admin level 2), Centre-Ouest Region (admin level 1)",Burkina Faso,Galliformes,2015_04_03_4 +273,flu_00274,2014-10-24 to 2014-10-24,H5N6 subtype,Heilongjiang (admin level 1),People's Republic of China,Aves; Gallus gallus; Anas; Galliformes,2014_11_03_7 +274,flu_00275,2015-11-13 to 2015-11-13,H5N2 subtype,Emilia-Romagna (admin level 1),Italy,Aves; Anas,2015_11_13_1 +275,flu_00276,2009-12-11 to 2009-12-11,H9N2 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2010_01_12_7 +276,flu_00277,2017-01-05 to 2017-01-18,Influenza A virus,Chile (country),Chile,Phasianidae; Aves,2017_01_23_7; 2017_01_10_9 +277,flu_00278,2015-03-02 to 2015-03-02,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus,2015_03_02_5 +278,flu_00279,2008-07-25 to 2008-07-25,H5N1 subtype,"Azov-Black Sea Krai (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1); Republic of Crimea (admin level 1)",Ukraine,Aves,2008_07_25_2 +279,flu_00280,2017-01-10 to 2017-01-10,Influenza A virus,Stara Zagora Province (admin level 1),Bulgaria,Aves,2017_01_10_8 +280,flu_00281,2015-03-25 to 2015-03-30,H5N1 subtype,Tulcea County (admin level 1),Romania,Aves; Pelecanidae,2015_04_03_1 +281,flu_00282,2016-04-20 to 2016-04-20,H7N3 subtype,Puebla (admin level 1); Jalisco (admin level 1); Veracruz (admin level 1),Mexico,Gallus gallus; Pavo cristatus,2016_04_20_1 +282,flu_00283,2016-01-15 to 2016-01-15,H5N2 subtype,"Haute-Garonne (admin level 2), Languedoc-Roussillon-Midi-Pyrénées (admin level 1)",France,Gallus gallus; Galliformes; Anas,2016_01_15_2 +283,flu_00284,2012-03-19 to 2012-03-25,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Phasianidae; Galliformes; Homo sapiens,2012_04_12_5 +284,flu_00285,2011-10-18 to 2011-10-18,H5N1 subtype,Mazandaran Province (admin level 1),Iran,Aves; Galliformes,2011_10_18_2 +285,flu_00286,2017-01-23 to 2017-03-08,Influenza A virus,"Budaka (admin level 2), Eastern Region (admin level 1); Masaka (admin level 2), Central Region (admin level 1)",Uganda,Aves; Gallus gallus; Anas,2017_03_08_4; 2017_01_23_5 +286,flu_00287,2015-11-13 to 2015-11-13,Influenza A virus,Eastern Cape (admin level 1),South Africa,Aves,2015_11_13_2 +287,flu_00288,2016-12-27 to 2017-01-05,H5N8 subtype,New Taipei City (admin level 1),Taiwan,Gallus gallus,2017_01_10_19 +288,flu_00289,2010-03-08 to 2010-03-08,H5N1 subtype,"Onderbanken (admin level 2), Limburg (admin level 1)",Netherlands,Aves; Gallus gallus; Galliformes; Homo sapiens,2010_03_26_2 +289,flu_00290,2008-11-07 to 2008-11-07,H5N1 subtype,Pangasinan (admin level 1),Philippines,Aves,2008_11_07_1 +290,flu_00291,2013-04-19 to 2013-04-19,H5N1 subtype,"Suffolk County (admin level 2), Massachusetts (admin level 1); England (admin level 1)",United States of America,Aves; Galliformes,2013_04_19_2 +291,flu_00292,2017-05-12 to 2017-05-12,H5N8 subtype,Friuli–Venezia Giulia (admin level 1),Italy,Aves,2017_05_12_3 +292,flu_00293,2007-09-28 to 2007-09-28,H5N1 subtype,"Taphan Hin (admin level 2), Phichit (admin level 1)",Thailand,Gallus gallus; Galliformes,2007_09_28_4 +293,flu_00294,2011-03-29 to 2011-03-29,H5N1 subtype,Tasmania (admin level 1),Australia,Gallus gallus; Galliformes; Anas,2011_03_29_2 +294,flu_00295,2014-10-24 to 2014-10-24,H5N2 subtype,"Suihua (admin level 2), Heilongjiang (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anas,2014_11_03_5 +295,flu_00296,2016-01-08 to 2016-01-11,Influenza A virus,Taichung (admin level 1),Taiwan,Passeridae,2016_01_15_1 diff --git a/er-out-final.csv b/data/entity_resolver_output/er-out-final.csv similarity index 100% rename from er-out-final.csv rename to data/entity_resolver_output/er-out-final.csv diff --git a/er-out-test.csv b/data/entity_resolver_output/er-out-test.csv similarity index 100% rename from er-out-test.csv rename to data/entity_resolver_output/er-out-test.csv diff --git a/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-01.csv b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-01.csv new file mode 100644 index 0000000..df52bfa --- /dev/null +++ b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-01.csv @@ -0,0 +1,331 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host +11,2013_07_18_1,2013-07-18,H5N1 subtype,Karnataka (admin level 1),India,Aves +23,2017_02_07_11,2017-02-07,H5N8 subtype,Struga Municipality (admin level 1),Macedonia,Galliformes; Aves +24,2015_06_19_3,2015-06-19,H5N1 subtype,Amol County (admin level 2); Mazandaran Province (admin level 1),Iran,Aves; Galliformes +25,2011_12_06_6,2011-11-10,H5N1 subtype,Dakahlia Governorate (admin level 1),Egypt,Homo sapiens; Galliformes; Aves +27,2009_09_08_3,2009-08-28,H5N1 subtype,Damietta Governorate (admin level 1),Egypt,Homo sapiens; Galliformes; Anas; Gallus gallus; Aves +31,2012_06_11_6,2012-05-23,H5N1 subtype,Guangzhou (admin level 2); Guangdong (admin level 1),People's Republic of China,Homo sapiens +32,2012_06_11_6,2012-05-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens; Galliformes; Gallus gallus +34,2016_10_03_1,2016-10-03,H5N5 subtype,Magellan and the Chilean Antarctic Region (admin level 1),Chile,Metazoa; Aves +38,2007_08_06_3,2007-07-24,H5N1 subtype,Yangon Region (admin level 1),Myanmar,Galliformes; Gallus gallus +41,2012_06_28_2,2012-06-13,H7N3 subtype,Jalisco (admin level 1),Mexico,Gallus gallus; Aves; Galliformes; Homo sapiens +43,2016_04_11_2,2016-04-11,H5N1 subtype,South Sulawesi (admin level 1),Indonesia,Anas; Gallus gallus; Aves +51,2010_12_09_6,2010-12-09,H5N1 subtype,kabupaten de Bandung occidental (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens +55,2008_03_27_5,2008-03-27,H5N1 subtype,Luang Namtha Province (admin level 1),Laos,Gallus gallus; Aves; Anas +70,2009_09_08_2,2009-09-08,H5N1 subtype,Bali (admin level 1),Indonesia,Gallus gallus; Aves +74,2014_01_31_5,2014-01-31,Influenza A virus,Nanchang (admin level 2); Jiangxi (admin level 1),People's Republic of China,Homo sapiens +75,2014_01_31_5,2014-01-31,Influenza A virus,Jiangxi (admin level 1),People's Republic of China,Homo sapiens +85,2012_03_06_3,2012-02-24,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Galliformes +86,2012_03_06_3,2012-02-24,H5N1 subtype,Mandalay Region (admin level 1),Myanmar,Galliformes +87,2012_03_06_3,2012-02-24,H5N1 subtype,Yangon Region (admin level 1),Myanmar,Galliformes; Gallus gallus; Aves +99,2012_12_21_3,2012-12-03,H5N1 subtype,Damietta Governorate (admin level 1),Egypt,Homo sapiens; Galliformes +100,2012_12_21_3,2012-12-03,H5N1 subtype,Egypt (country),Egypt,Galliformes; Homo sapiens +104,2008_08_01_5,2008-08-01,H5N1 subtype,Thailand (country),Thailand,Homo sapiens +111,2007_12_18_5,2007-12-10,H5N1 subtype,Poland (country),Poland,Galliformes; Aves +124,2017_01_10_16,2017-12-21,H5N8 subtype,Gorzów County (admin level 2); Lubusz Voivodeship (admin level 1),Poland,Anas; Gallus gallus; Aves +125,2017_01_10_16,2017-12-21,H5N8 subtype,Poland (country),Poland,Aves +142,2008_11_14_4,2008-11-08,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +145,2009_10_22_1,2009-10-10,H1N1 subtype,Norway (country),Norway,Sus scrofa; Galliformes +146,2012_09_20_1,2012-09-11,H5N1 subtype,People's Republic of China (country),People's Republic of China,Galliformes; Anas +158,2010_01_27_2,2010-01-12,H1N1 subtype,Yamagata Prefecture (admin level 1),Japan,Sus scrofa +159,2010_01_27_2,2010-01-12,H1N1 subtype,Japan (country),Japan,Sus scrofa +164,2012_02_02_5,2012-01-03,H5N1 subtype,Gharbia Governorate (admin level 1),Egypt,Anas; Gallus gallus; Galliformes +165,2012_02_02_5,2012-01-03,H5N1 subtype,Egypt (country),Egypt,Anas; Gallus gallus; Aves +174,2009_11_20_3,2009-10-19,H1N1 subtype,Norway (country),Norway,Sus scrofa +175,2012_06_28_1,2012-06-20,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Lonchura punctulata; Lonchura punctulata; Aves +176,2012_06_28_1,2012-06-20,H5N1 subtype,People's Republic of China (country),People's Republic of China,Aves; Galliformes +192,2015_03_02_9,2015-03-02,H5N1 subtype,Vietnam (country),Vietnam,Aves +201,2017_03_22_4,2017-03-22,H5N1 subtype,Malaysia (country),Malaysia,Gallus gallus; Galliformes; Aves +217,2009_11_06_1,2009-10-26,H5N1 subtype,Moscow (admin level 1),Russia,Galliformes +218,2009_11_06_1,2009-10-26,H5N1 subtype,Tuva Republic (admin level 1),Russia,Podicipedidae; Aves +227,2016_10_03_3,2016-10-03,H5N2 subtype,South Africa (country),South Africa,Aves +234,2010_01_27_3,2010-01-04,H5N1 subtype,Rajshahi Division (admin level 1),Bangladesh,Galliformes; Homo sapiens +240,2015_01_22_1,2014-12-29,H5N1 subtype,United States of America (country),United States of America,Galliformes; Aves +248,2015_05_15_4,2015-05-15,H5N2 subtype,Wright County (admin level 2); Minnesota (admin level 1),United States of America,Aves +249,2015_05_15_4,2015-05-15,H5N2 subtype,United States of America (country),United States of America,Aves +258,2014_01_09_5,2013-12-28,H5N1 subtype,Vietnam (country),Vietnam,Anas +268,2008_06_13_2,2008-06-13,H5N1 subtype,North Korea (country),North Korea,Galliformes; Gallus gallus +277,2015_08_07_8,2015-08-07,H5N6 subtype,Vietnam (country),Vietnam,Aves +289,2009_05_11_1,2009-04-12,H1N1 subtype,Alberta (admin level 1),Canada,Sus scrofa +290,2009_05_11_1,2009-04-12,H1N1 subtype,Canada (country),Canada,Sus scrofa +325,2011_07_11_4,2011-06-30,H5N1 subtype,Ratchasan (admin level 2); Chachoengsao (admin level 1),Thailand,Aves; Homo sapiens +326,2011_07_11_4,2011-06-30,H5N1 subtype,West Java Province (admin level 1),Thailand,Aves; Homo sapiens +327,2011_07_11_4,2011-06-30,H5N1 subtype,Thailand (country),Thailand,Aves; Homo sapiens +355,2013_11_26_1,2013-11-26,Influenza A virus,Germany (country),Germany,Aves; Homo sapiens +368,2009_06_05_3,2009-05-30,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Homo sapiens; Galliformes +369,2009_06_05_3,2009-06-05,H5N1 subtype,Cairo Governorate (admin level 1),Egypt,Homo sapiens +370,2009_06_05_3,2009-06-05,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes; Aves +376,2014_04_21_2,2014-04-21,Influenza A virus,Japan (country),Japan,Gallus gallus; Aves +388,2007_11_30_3,2007-11-04,H5N1 subtype,Myanmar (country),Myanmar,Galliformes; Aves; Gallus gallus +399,2011_05_25_1,2011-05-25,H5N1 subtype,Dhaka Division (admin level 1),Bangladesh,Galliformes; Aves +400,2011_05_25_1,2011-05-25,H5N1 subtype,Bangladesh (country),Bangladesh,Aves +421,2009_06_05_1,2009-06-05,H1N1 subtype,United States of America (country),United States of America,Aves; Sus scrofa +426,2016_11_15_9,2016-11-09,H5N8 subtype,Austria (country),Austria,Aves +433,2017_02_01_7,2017-02-01,H5N8 subtype,Czech Republic (country),Czech Republic,Aves +436,2015_05_11_3,2015-05-11,H5N1 subtype,Kastamonu Vilayet (admin level 1),Ottoman Empire,Galliformes; Gallus gallus +437,2015_05_11_3,2015-05-11,H5N1 subtype,Ottoman Empire (country),Ottoman Empire,Gallus gallus +440,2011_04_05_4,2011-04-05,H7N1 subtype,Schoren (admin level 2); Canton of Bern (admin level 1),Switzerland,Galliformes; Aves +441,2011_04_05_4,2011-04-05,H7N1 subtype,Switzerland (country),Switzerland,Aves +442,2016_06_24_2,2016-06-07,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +443,2011_01_14_6,2011-01-14,H1N1 subtype,United States of America (country),United States of America,Aves; Galliformes; Gallus gallus +447,2017_03_03_5,2017-03-03,Influenza A virus,South Chungcheong Province (admin level 1),South Korea,Gallus gallus; Anas +448,2017_03_03_5,2017-03-03,Influenza A virus,South Korea (country),South Korea,Gallus gallus; Anas; Aves +449,2011_11_17_7,2011-11-17,H5N2 subtype,Western Cape (admin level 1),South Africa,Galliformes; Aves +450,2011_11_17_7,2011-11-17,H5N2 subtype,South Africa (country),South Africa,Aves +457,2015_02_23_8,2015-02-02,H9N2 subtype,Egypt (country),Egypt,Galliformes; Homo sapiens +485,2017_03_03_4,2017-02-22,H5N8 subtype,South Korea (country),South Korea,Anas; Galliformes +497,2011_04_05_5,2011-04-05,H7N3 subtype,Polk County (admin level 2); Iowa (admin level 1),United States of America,Galliformes +498,2011_04_05_5,2011-04-05,H7N3 subtype,Missouri (admin level 1),United States of America,Galliformes; Phasianidae; Aves +499,2011_04_05_5,2011-04-05,H7N3 subtype,United States of America (country),United States of America,Phasianidae; Aves +505,2017_02_01_6,2017-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Aves +522,2013_01_18_3,2013-01-18,H7N3 subtype,Mexico (country),Mexico,Aves +535,2008_05_23_2,2008-05-23,H5N1 subtype,West Bengal (admin level 1),India,Galliformes; Aves +544,2017_08_25_4,2017-08-16,H9N2 subtype,Guangdong (admin level 1),People's Republic of China,Homo sapiens +553,2008_03_28_1,2008-03-28,H5N1 subtype,Canton of Lucerne (admin level 1),Switzerland,Aves +554,2008_03_28_1,2008-03-28,H5N1 subtype,Switzerland (country),Switzerland,Aves; Galliformes +560,2008_04_30_5,2008-04-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes +563,2009_07_10_1,2009-07-10,H1N1 subtype,Canada (country),Canada,Sus scrofa +582,2012_01_06_7,2012-01-06,H5N1 subtype,Zimbabwe (country),Zimbabwe,Homo sapiens +609,2008_06_06_1,2005-12-26,H5N1 subtype,Hunan (admin level 1),People's Republic of China,Anas; Gallus gallus +610,2008_06_06_1,2005-12-26,H5N1 subtype,People's Republic of China (country),People's Republic of China,Gallus gallus; Anas +624,2007_07_05_2,2007-07-05,H5N1 subtype,Germany (country),Germany,Podiceps nigricollis; Aves +625,2007_07_05_2,2007-07-05,H5N1 subtype,Thuringia (admin level 1),Germany,Aves +626,2007_07_05_2,2007-07-05,H5N1 subtype,Bavaria (admin level 1),Germany,Aves +627,2007_07_05_2,2007-07-05,H5N1 subtype,Lower Saxony (admin level 1),Germany,Aves +632,2014_04_10_1,2014-03-28,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes +633,2014_04_10_1,2014-03-28,H5N1 subtype,Distrik Jessore (admin level 2); Khulna Division (admin level 1),Bangladesh,Gallus gallus; Aves +649,2009_02_23_5,2009-02-23,H5N1 subtype,British Columbia (admin level 1),Canada,Galliformes +653,2016_10_17_6,2016-07-24,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Homo sapiens +661,2008_10_24_1,2008-10-15,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Galliformes +663,2010_02_03_4,2010-01-25,H5N1 subtype,Gazipur District (admin level 2); Dhaka Division (admin level 1),Bangladesh,Gallus gallus; Galliformes; Anas +665,2015_12_04_4,2015-12-04,H5N1 subtype,Vietnam (country),Vietnam,Aves +670,2007_11_01_1,2007-11-01,H5N1 subtype,Florida Department (admin level 1),Uruguay,Aves; Homo sapiens +677,2014_04_29_4,2014-04-22,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Homo sapiens +693,2013_08_19_3,2013-08-19,H7N9 subtype,People's Republic of China (country),People's Republic of China,Homo sapiens; Aves +694,2015_08_07_6,2015-08-07,H5N1 subtype,State of Palestine (country),State of Palestine,Aves; Homo sapiens +705,2015_10_30_2,2015-10-30,H5N2 subtype,South Korea (country),South Korea,Anas +710,2012_08_30_1,2012-08-30,H5N1 subtype,North 24 Parganas district (admin level 2); West Bengal (admin level 1),India,Gallus gallus; Galliformes +711,2012_08_30_1,2012-08-30,H5N1 subtype,India (country),India,Galliformes; Aves +712,2016_05_03_3,2016-05-03,H5N1 subtype,Vietnam (country),Vietnam,Aves +721,2008_04_30_4,2008-04-30,H5N1 subtype,Shpola Raion (admin level 2); Cherkasy Oblast (admin level 1),Ukraine,Gallus gallus; Homo sapiens; Aves +722,2008_04_30_4,2008-04-30,H5N1 subtype,Ukraine (country),Ukraine,Aves +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves +760,2010_04_02_3,2010-03-27,H5N1 subtype,Tulcea County (admin level 1),Romania,Galliformes; Gallus gallus +761,2010_04_02_3,2010-03-27,H5N1 subtype,Romania (country),Romania,Gallus gallus; Aves +805,2016_10_17_4,2016-10-17,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Sus scrofa; Anas +830,2016_10_17_5,2016-10-17,H5N1 subtype,Laos (country),Laos,Aves +833,2009_09_25_3,2009-09-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +834,2009_09_25_3,2009-09-13,H5N1 subtype,Alexandria Governorate (admin level 1),Egypt,Homo sapiens +835,2009_09_25_3,2009-09-25,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +841,2017_02_01_9,2017-02-01,H5N8 subtype,Italy (country),Italy,Aves +844,2016_12_29_8,2016-12-19,H5N8 subtype,Russia (country),Russia,Galliformes +845,2016_12_29_8,2016-12-08,H5N8 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Homo sapiens; Sus scrofa; Galliformes +857,2008_01_18_1,2008-01-18,H5N1 subtype,Romania (country),Romania,Aves +879,2006_12_01_3,2006-12-01,H5N1 subtype,Egypt (country),Egypt,Aves +896,2007_09_14_1,2007-09-09,H5N1 subtype,North Dakota (admin level 1),United States of America,Anas +923,2010_05_28_8,2010-05-28,H5N1 subtype,Zeeland (Noord-Brabant) (admin level 2); Landerd (admin level 1),Netherlands,Gallus gallus; Galliformes; Aves +924,2010_05_28_8,2010-05-28,H5N1 subtype,Netherlands (country),Netherlands,Aves +936,2007_07_27_3,2007-07-27,H5N1 subtype,Vietnam (country),Vietnam,Galliformes; Anas +951,2015_01_08_2,2015-01-07,H5N8 subtype,Germany (country),Germany,Galliformes; Aves +952,2015_03_27_7,2015-03-27,H5N2 subtype,Pope County (Minnesota) (admin level 2); Minnesota (admin level 1),Iran,Aves +953,2015_03_27_7,2015-03-27,H5N2 subtype,Semnan Province (admin level 1),Iran,Aves +954,2015_03_27_7,2015-03-27,H5N2 subtype,Iran (country),Iran,Aves; Meleagris gallopavo +966,2013_02_22_1,2013-02-22,H5N1 subtype,Guanajuato (admin level 1),Mexico,Gallus gallus; Galliformes +967,2013_02_22_1,2013-02-22,H5N1 subtype,Mexico (country),Mexico,Galliformes; Gallus gallus; Anas +974,2014_05_12_5,2014-04-22,H5N6 subtype,Sichuan (admin level 1),People's Republic of China,Galliformes; Homo sapiens; Aves +975,2014_05_12_5,2014-05-07,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +987,2009_02_23_2,2009-02-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves +1009,2017_06_27_5,2017-06-23,H5N2 subtype,Taiwan (country),Taiwan,Aves +1012,2016_12_01_1,2016-11-12,H5N8 subtype,Croatia (country),Croatia,Galliformes; Gallus gallus +1013,2014_04_29_2,2014-04-22,H5N8 subtype,Japan (country),Japan,Gallus gallus; Homo sapiens; Aves +1032,2014_10_06_1,2012-12-26,H5N1 subtype,Russia (country),Russia,Galliformes +1035,2013_06_28_1,2013-06-28,H7N7 subtype,Lower Saxony (admin level 1),Germany,Galliformes; Aves +1036,2013_06_28_1,2013-06-28,H7N7 subtype,Germany (country),Germany,Aves +1047,2016_01_29_1,2016-01-29,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Anas +1093,2015_08_07_2,2015-08-07,H5N1 subtype,Indonesia (country),Indonesia,Aves; Gallus gallus; Anas +1095,2014_12_29_6,2014-12-26,H7N9 subtype,Taiwan (country),Taiwan,Aves; Anas +1110,2016_06_07_1,2016-06-07,H9N2 subtype,People's Republic of China (country),People's Republic of China,Gallus gallus; Aves +1111,2015_06_19_1,2015-06-19,H7N7 subtype,Germany (country),Germany,Aves; Gallus gallus +1118,2016_01_22_5,2016-01-22,H5N2 subtype,Kaohsiung City (admin level 1),Taiwan,Galliformes; Aves +1119,2016_01_22_5,2016-01-22,H5N2 subtype,Taiwan (country),Taiwan,Aves +1139,2015_07_20_5,2015-07-20,H5N2 subtype,Taiwan (country),Taiwan,Aves +1140,2015_05_29_3,2015-05-29,H5N1 subtype,India (country),India,Aves; Homo sapiens +1147,2014_12_19_2,2014-12-14,Influenza A virus,South Korea (country),South Korea,Gallus gallus +1165,2009_03_17_1,2009-03-15,H5N1 subtype,Neubrandenburg District (admin level 1),East Germany,Aves; Anser; Anas +1186,2011_09_23_1,2011-09-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Galliformes +1187,2011_09_23_1,2011-09-23,H5N1 subtype,People's Republic of China (country),People's Republic of China,Galliformes; Aves; Homo sapiens +1194,2015_02_06_8,2015-02-06,Influenza A virus,United Kingdom (country),United Kingdom,Aves +1210,2012_08_20_4,2012-08-09,H3N2 subtype,United States of America (country),United States of America,Homo sapiens; Sus scrofa +1231,2015_01_23_6,2015-01-08,H5N1 subtype,Nigeria (country),Nigeria,Aves +1247,2017_03_22_1,2017-03-06,H5N8 subtype,Vienna (admin level 1),Austria,Pelecanidae +1248,2017_03_22_1,2017-03-06,H5N8 subtype,Austria (country),Austria,Pelecanidae; Aves +1249,2012_11_15_3,2012-11-15,H5N1 subtype,New South Wales (admin level 1),Australia,Gallus gallus; Aves +1250,2012_11_15_3,2012-11-15,H5N1 subtype,Australia (country),Australia,Aves; Homo sapiens; Gallus gallus +1251,2015_01_23_7,2015-01-23,H5N1 subtype,Jenin Governorate (admin level 2); West Bank (admin level 1),State of Palestine,Aves +1260,2009_11_06_4,2009-11-06,H1N1 subtype,Hong Kong (admin level 1),People's Republic of China,Sus scrofa; Sus scrofa +1261,2009_11_06_4,2009-11-06,H1N1 subtype,People's Republic of China (country),People's Republic of China,Sus scrofa +1294,2016_12_13_1,2016-12-13,H5N8 subtype,Austria (country),Austria,Aves +1295,2009_08_28_1,2009-08-06,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves; Anser +1296,2009_08_28_1,2009-08-06,H5N1 subtype,Mongolia (country),Mongolia,Anser +1303,2013_06_07_1,2013-06-07,H7N9 subtype,Shanghai (admin level 1),People's Republic of China,Anser; Homo sapiens +1304,2013_06_07_1,2013-06-07,H7N9 subtype,People's Republic of China (country),People's Republic of China,Homo sapiens +1312,2013_05_13_2,2013-03-01,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves +1318,2009_12_14_1,2009-12-03,H1N1 subtype,Kabupaten Karawang (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens +1327,2008_08_01_1,2008-08-01,H5N1 subtype,South Korea (country),South Korea,Aves +1333,2006_12_15_2,2006-12-9,H5N1 subtype,South Korea (country),South Korea,Galliformes; Aves +1369,2016_12_06_17,2016-11-25,H5N2 subtype,South Africa (country),South Africa,Aves +1382,2015_01_23_5,2015-01-23,H5N8 subtype,Myanmar (country),Myanmar,Aves +1384,2010_12_09_2,2010-12-09,H5N1 subtype,Samukh District (admin level 1),Azerbaijan,Galliformes; Aves +1385,2010_12_09_2,2010-12-09,H5N1 subtype,Azerbaijan (country),Azerbaijan,Aves +1388,2015_01_23_4,2015-01-23,H5N8 subtype,Japan (country),Japan,Gallus gallus +1400,2015_06_26_5,2015-06-26,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +1401,2015_06_26_5,2015-06-26,H5N1 subtype,Sohag Governorate (admin level 1),Egypt,Homo sapiens +1402,2015_06_26_5,2015-06-26,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes; Sus scrofa +1406,2016_12_06_16,2016-11-07,H5N8 subtype,Russia (country),Russia,Aves; Galliformes +1419,2015_12_16_1,2015-11-18,Influenza A virus,Oregon (admin level 1),United States of America,Metazoa; Aves +1420,2015_12_16_1,2015-11-18,Influenza A virus,United States of America (country),United States of America,Aves; Galliformes +1437,2016_01_22_3,2016-01-22,H5N1 subtype,India (country),India,Gallus gallus; Anas; Aves +1447,2014_02_07_4,2014-12-06,Influenza A virus,People's Republic of China (country),People's Republic of China,Homo sapiens +1448,2014_02_07_4,2014-12-06,Influenza A virus,Nanchang (admin level 2); Jiangxi (admin level 1),People's Republic of China,Homo sapiens; Galliformes +1449,2014_02_07_4,2014-02-07,Influenza A virus,People's Republic of China (country),People's Republic of China,Galliformes; Aves +1450,2016_09_09_1,2016-09-09,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves; Homo sapiens +1471,2015_09_30_5,2015-09-30,H5N1 subtype,Vietnam (country),Vietnam,Aves +1476,2014_01_09_3,2013-12-24,H7N7 subtype,South Africa (country),South Africa,Aves; Galliformes +1477,2010_06_07_2,2010-06-07,H5N1 subtype,Ukraine (country),Ukraine,Galliformes; Aves +1488,2013_02_11_1,2013-02-11,H5N1 subtype,Thailand (country),Thailand,Aves +1496,2010_11_18_3,2010-11-01,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens +1503,2013_04_12_6,2013-04-04,H5N1 subtype,Dong Thap Province (admin level 1),Vietnam,Gallus gallus; Homo sapiens +1543,2017_03_03_1,2017-02-20,H5N8 subtype,Spain (country),Spain,Ciconia ciconia; Anser; Galliformes +1544,2017_03_03_1,2017-02-20,H5N8 subtype,Catalonia (admin level 1),Spain,Aves +1546,2007_02_07_2,2007-02-07,H5N1 subtype,Japan (country),Japan,Galliformes; Gallus gallus; Anas +1561,2011_07_11_3,2011-07-11,Influenza A virus,South Africa (country),South Africa,Aves; Homo sapiens +1570,2016_06_24_6,2016-06-19,H9N2 subtype,People's Republic of China (country),People's Republic of China,Homo sapiens; Aves +1579,2015_06_05_4,2015-06-05,Influenza A virus,Turkey (country),Turkey,Gallus gallus; Aves +1596,2007_06_12_4,2007-06-12,H5N1 subtype,Thai Binh illoqarfik (admin level 2); Thái Bình (admin level 1),Vietnam,Galliformes +1602,2009_03_10_3,2009-03-04,H7N6 subtype,Aichi Prefecture (admin level 1),Japan,Galliformes; Aves +1603,2009_03_10_3,2009-03-04,H7N6 subtype,Japan (country),Japan,Aves; Gallus gallus +1610,2009_06_01_1,2009-05-22,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves +1611,2016_02_08_4,2016-02-08,H7N3 subtype,South Africa (country),South Africa,Aves; Anas +1623,2017_08_25_3,2017-08-22,H5N8 subtype,South Africa (country),South Africa,Aves; Gallus gallus +1634,2015_05_15_1,2015-05-15,H7N3 subtype,Chiapas (admin level 1),Mexico,Turdidae +1648,2012_09_07_1,2012-06-05,H5N1 subtype,Guangzhou (kapital sa lalawigan) (admin level 2); Guangdong (admin level 1),People's Republic of China,Galliformes +1649,2012_09_07_1,2012-06-05,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Galliformes; Gallus gallus +1650,2017_02_07_7,2017-01-31,H5N1 subtype,Cambodia (country),Cambodia,Gallus gallus +1661,2011_08_19_1,2011-08-14,H5N1 subtype,Beni Suef Governorate (admin level 1),Egypt,Galliformes; Gallus gallus; Anas +1662,2011_08_19_1,2011-08-14,H5N1 subtype,Egypt (country),Egypt,Gallus gallus; Anas; Aves +1670,2007_03_23_1,2007-01-04,H5N1 subtype,Kumamoto Prefecture (admin level 1),Japan,Aves; Galliformes +1671,2007_03_23_1,2007-01-13,H5N1 subtype,Japan (country),Japan,Galliformes; Aves +1690,2011_07_11_1,2011-06-22,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes; Aves +1691,2014_12_23_2,2014-12-23,H5N8 subtype,Germany (country),Germany,Aves +1704,2008_02_20_3,2008-02-20,H5N1 subtype,Lampung Province (admin level 1),Indonesia,Galliformes +1722,2010_01_20_6,2010-01-15,H3N2 subtype,Iowa (admin level 1),United States of America,Homo sapiens +1727,2016_12_29_1,2016-11-23,H5N8 subtype,South Korea (country),South Korea,Aves; Chroicocephalus ridibundus; Anas +1744,2014_01_09_1,2013-12-24,H5N2 subtype,People's Republic of China (country),People's Republic of China,Gallus gallus; Galliformes +1762,2011_06_20_3,2011-06-04,Influenza A virus,Germany (country),Germany,Aves +1776,2013_02_22_2,2013-02-22,H5N1 subtype,Neubrandenburg District (admin level 1),East Germany,Galliformes; Gallus gallus +1777,2013_02_22_2,2013-02-22,H5N1 subtype,East Germany (country),East Germany,Gallus gallus +1778,2008_09_11_3,2008-09-11,H5N1 subtype,Oslomej Municipality (admin level 1),Macedonia,Galliformes; Gallus gallus; Aves +1779,2008_09_11_3,2008-09-11,H5N1 subtype,Macedonia (country),Macedonia,Gallus gallus; Aves +1787,2016_10_17_2,2016-10-17,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +1794,2008_06_19_3,2008-06-19,H5N1 subtype,Quang Ngai (admin level 2); Quảng Ngãi (admin level 1),Vietnam,Gallus gallus; Galliformes; Homo sapiens +1814,2006_12_07_3,2006-12-07,H5N1 subtype,Quebec (admin level 1),Canada,Homo sapiens +1816,2010_02_03_1,2010-02-03,H5N1 subtype,Sirajganj (distrito sa Bangladesh) (admin level 2); Rajshahi Division (admin level 1),Bangladesh,Gallus gallus; Galliformes; Aves +1817,2010_02_03_1,2010-02-03,H5N1 subtype,Bangladesh (country),Bangladesh,Aves +1827,2014_12_09_2,2014-12-09,H5N8 subtype,Netherlands (country),Netherlands,Galliformes; Anas; Aves +1832,2014_04_29_1,2014-04-22,H5N1 subtype,North Korea (country),North Korea,Aves +1841,2011_06_20_2,2011-06-16,H5N1 subtype,Apriltsi Municipality (admin level 2); Lovech Province (admin level 1),Bulgaria,Galliformes; Homo sapiens +1846,2015_10_16_4,2015-10-16,H5N1 subtype,Vietnam (country),Vietnam,Aves +1864,2015_11_09_3,2015-11-09,H5N1 subtype,South Jeolla Province (admin level 1),South Korea,Aves +1865,2015_11_09_3,2015-11-09,H5N1 subtype,South Korea (country),South Korea,Aves +1886,2011_03_29_6,2011-03-16,H5N1 subtype,Myanmar (country),Myanmar,Galliformes +1887,2011_03_29_6,2011-03-29,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus +1888,2011_03_29_6,2011-03-16,H5N1 subtype,Myanmar (country),Myanmar,Gallus gallus; Galliformes; Aves +1894,2014_03_07_9,2014-02-06,H5N1 subtype,India (country),India,Galliformes +1895,2014_03_07_9,2014-02-06,H5N1 subtype,Odisha (admin level 1),India,Corvus splendens; Corvus +1896,2014_03_07_9,2014-02-06,H5N1 subtype,Orissa (admin level 1),India,Corvus splendens; Corvus +1899,2016_07_12_6,2016-07-12,H5N1 subtype,Qena Governorate (admin level 1),Egypt,Homo sapiens +1908,2015_04_03_6,2015-03-27,Influenza A virus,Netherlands (country),Netherlands,Aves +1919,2016_05_06_5,2016-04-30,H5N1 subtype,Jasper County (admin level 2); Illinois (admin level 1),United States of America,Aves +1920,2016_05_06_5,2016-04-30,H5N1 subtype,Missouri (admin level 1),United States of America,Aves +1930,2014_09_30_1,2014-09-30,Influenza A virus,Berks County (admin level 2); Pennsylvania (admin level 1),United States of America,Aves; Homo sapiens +1935,2010_01_12_1,2009-12-29,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Copsychus saularis; Aves; Homo sapiens +1946,2009_01_30_2,2009-01-20,H5N1 subtype,British Columbia (admin level 1),Canada,Galliformes; Aves +1947,2009_01_30_2,2009-01-20,H5N1 subtype,Canada (country),Canada,Aves; Homo sapiens +1952,2015_01_30_3,2015-01-30,H5N1 subtype,Nigeria (country),Nigeria,Aves +1953,2016_03_21_3,2016-03-21,H5N1 subtype,Indonesia (country),Indonesia,Aves +1961,2017_05_12_7,2017-03-30,Influenza A virus,South Korea (country),South Korea,Aves; Gallus gallus +1964,2016_12_29_12,2016-12-15,Influenza A virus,Jerusalem District (admin level 1),Israel,Gallus gallus +1980,2016_12_06_2,2016-11-12,H5N8 subtype,Åland Islands (admin level 1),Finland,Anas; Aves +1981,2016_12_06_2,2016-11-12,H5N8 subtype,Finland (country),Finland,Aves; Galliformes +1990,2008_01_04_4,2008-01-04,H5N1 subtype,Benin (country),Benin,Galliformes; Gallus gallus; Anas; Phasianidae +1991,2008_01_04_4,2008-01-04,H5N1 subtype,Dangbo (admin level 2); Ouémé Department (admin level 1),Benin,Gallus gallus; Anas +1992,2007_08_17_3,2007-08-17,H5N1 subtype,Cao Bang (admin level 1),Vietnam,Galliformes; Gallus gallus; Anas +1993,2007_08_17_3,2007-08-17,H5N1 subtype,Vietnam (country),Vietnam,Gallus gallus; Anas; Aves +1995,2015_03_20_5,2015-03-20,H7N7 subtype,Netherlands (country),Netherlands,Gallus gallus; Galliformes; Anser +1997,2016_07_29_1,2016-07-29,H5N8 subtype,United States of America (country),United States of America,Aves; Galliformes; Anas +2011,2010_12_03_4,2010-11-22,H5N1 subtype,Nam Dinh (admin level 2); Nam Định (admin level 1),Vietnam,Galliformes; Anas +2012,2010_12_03_4,2010-11-16,H5N1 subtype,Vietnam (country),Vietnam,Anas; Aves +2038,2012_04_12_3,2012-03-29,H5N2 subtype,Ireland (country),Ireland,Aves +2041,2012_12_14_1,2012-12-14,H5N1 subtype,Krasnodar Krai (admin level 1),Russia,Aves +2056,2007_09_28_3,2007-09-28,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes; Gallus gallus +2057,2015_10_28_2,2015-10-28,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves +2065,2010_12_03_6,2010-11-10,H5N2 subtype,Germany (country),Germany,Aves; Homo sapiens +2076,2015_03_20_7,2015-03-20,H5N1 subtype,Vietnam (country),Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes +2081,2015_03_06_4,2015-03-06,H5N2 subtype,South Africa (country),South Africa,Aves +2096,2017_06_06_7,2017-05-17,H5N8 subtype,Zimbabwe (country),Zimbabwe,Aves +2097,2009_01_30_1,2009-01-30,H5N1 subtype,Phitsanulok (admin level 1),Thailand,Aves +2109,2017_05_12_4,2017-04-04,H7N3 subtype,Mexico (country),Mexico,Aves +2112,2007_05_30_4,2007-05-30,H5N1 subtype,Zamfara State (admin level 1),Nigeria,Galliformes; Aves +2113,2007_05_30_4,2007-05-30,H5N1 subtype,Nigeria (country),Nigeria,Aves; Anas +2135,2016_12_06_19,2016-11-25,H5N8 subtype,Sweden (country),Sweden,Gallus gallus +2148,2011_04_28_1,2011-04-14,H5N1 subtype,Sükhbaatar Province (admin level 1),Mongolia,Aves; Cygnus cygnus +2149,2011_04_28_1,2011-04-14,H5N1 subtype,Mongolia (country),Mongolia,Cygnus cygnus; Aves +2155,2012_07_24_4,2012-07-03,Influenza A virus,Karawang (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens; Gallus gallus +2156,2012_07_24_4,2012-06-29,Influenza A virus,Indonesia (country),Indonesia,Homo sapiens +2157,2009_05_05_3,2009-04-22,H5N1 subtype,Thanh Hoa (admin level 2); Thanh Hóa (admin level 1),Vietnam,Homo sapiens +2158,2009_05_05_3,2009-04-22,H5N1 subtype,Vietnam (country),Vietnam,Homo sapiens +2169,2016_05_20_4,2016-05-20,H7N7 subtype,Italy (country),Italy,Aves +2184,2016_07_12_4,2016-07-12,H5N6 subtype,Vietnam (country),Vietnam,Aves +2197,2014_08_29_2,2014-08-29,Influenza A virus,United States of America (country),United States of America,Anas; Aves +2205,2015_08_24_1,2015-08-24,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +2222,2014_11_03_7,2014-10-24,H5N6 subtype,People's Republic of China (country),People's Republic of China,Anas; Gallus gallus +2223,2014_11_03_7,2014-10-24,H5N6 subtype,Heilongjiang (admin level 1),People's Republic of China,Aves; Galliformes +2231,2017_01_23_6,2017-01-23,Influenza A virus,North Korea (country),North Korea,Aves; Homo sapiens +2235,2014_06_23_4,2014-04-20,H5N1 subtype,Indonesia (country),Indonesia,Homo sapiens; Gallus gallus +2247,2008_07_18_3,2008-07-10,H5N1 subtype,Banten Province (admin level 1),Indonesia,Homo sapiens; Galliformes +2248,2008_07_18_3,2008-07-10,H5N1 subtype,Indonesia (country),Indonesia,Galliformes; Homo sapiens +2253,2016_12_13_14,2016-12-13,H5N8 subtype,Iran (country),Iran,Aves; Galliformes +2270,2008_11_07_2,2008-11-07,H5N1 subtype,Tombali Region (admin level 1),Guinea-Bissau,Gallus gallus +2271,2017_03_08_7,2017-03-08,Influenza A virus,South Korea (country),South Korea,Gallus gallus; Aves +2287,2017_09_28_1,2017-08-25,H5N8 subtype,Canton of Fribourg (admin level 1),Switzerland,Aves; Homo sapiens +2288,2015_01_30_5,2015-01-30,H7N9 subtype,Canada (country),Canada,Homo sapiens; Gallus gallus +2299,2007_04_16_2,2007-04-16,H5N1 subtype,Iran (country),Iran,Gallus gallus; Aves +2300,2017_03_22_8,2017-03-22,H5N6 subtype,South Korea (country),South Korea,Aves +2316,2017_01_10_8,2017-01-10,Influenza A virus,Bulgaria (country),Bulgaria,Aves +2317,2017_01_10_8,2017-01-10,Influenza A virus,Stara Zagora Province (admin level 1),Bulgaria,Aves +2331,2012_07_24_1,2012-07-24,H5N1 subtype,People's Republic of China (country),People's Republic of China,Erithacus rubecula; Aves +2361,2015_07_31_1,2015-07-31,H7N7 subtype,Germany (country),Germany,Gallus gallus; Homo sapiens +2367,2014_09_10_3,2014-04-20,H5N1 subtype,Indonesia (country),Indonesia,Homo sapiens; Gallus gallus +2386,2016_01_15_2,2016-01-15,H5N2 subtype,Haute-Garonne (admin level 2); Languedoc-Roussillon-Midi-Pyrénées (admin level 1),France,Galliformes; Anas; Gallus gallus +2387,2016_01_15_2,2016-01-15,H5N2 subtype,France (country),France,Anas; Gallus gallus +2393,2015_08_24_6,2015-08-24,H5N1 subtype,State of Palestine (country),State of Palestine,Aves +2399,2014_11_03_4,2014-10-24,H5N1 subtype,Lhasa (admin level 2); Tibet (admin level 1),People's Republic of China,Gallus gallus; Anas +2406,2017_01_10_19,2016-12-27,H5N8 subtype,New Taipei City (admin level 1),Taiwan,Gallus gallus +2407,2017_01_10_19,2017-01-05,H5N8 subtype,Taiwan (country),Taiwan,Gallus gallus +2435,2015_04_03_3,2015-04-02,H5N1 subtype,United States of America (country),United States of America,Aves; Galliformes +2444,2008_11_07_1,2008-11-07,H5N1 subtype,Pangasinan (admin level 1),Philippines,Aves +2445,2008_11_07_1,2008-11-07,H5N1 subtype,Philippines (country),Philippines,Aves +2457,2015_09_04_3,2015-09-04,H5N1 subtype,Vietnam (country),Vietnam,Aves +2477,2017_05_12_3,2017-05-12,H5N8 subtype,Italy (country),Italy,Aves +2478,2017_05_12_3,2017-05-12,H5N8 subtype,Friuli–Venezia Giulia (admin level 1),Italy,Aves +2480,2011_08_29_1,2011-08-19,H5N1 subtype,Cambodia (country),Cambodia,Homo sapiens; Galliformes +2499,2017_03_08_12,2017-03-08,Influenza A virus,arrondissement of Montélimar (admin level 2); Drôme (admin level 1),France,Aves; Homo sapiens +2507,2016_07_12_2,2016-07-04,H5N2 subtype,Canada (country),Canada,Aves +2510,2007_09_28_4,2007-09-28,H5N1 subtype,Taphan Hin (admin level 2); Phichit (admin level 1),Thailand,Galliformes; Gallus gallus +2511,2007_09_28_4,2007-09-28,H5N1 subtype,Thailand (country),Thailand,Gallus gallus +2514,2014_11_03_5,2014-10-24,H5N2 subtype,People's Republic of China (country),People's Republic of China,Anas; Gallus gallus +2515,2014_11_03_5,2014-10-24,H5N2 subtype,Suihua (admin level 2); Heilongjiang (admin level 1),People's Republic of China,Aves +2518,2016_01_15_1,2016-01-08,Influenza A virus,Taiwan (country),Taiwan,Passeridae +2519,2016_01_15_1,2016-01-08,Influenza A virus,Taichung (admin level 1),Taiwan,Passeridae +2520,2016_01_15_1,2016-01-11,Influenza A virus,Taiwan (country),Taiwan,Passeridae +2523,2015_08_24_7,2015-08-24,H5N1 subtype,Vietnam (country),Vietnam,Aves diff --git a/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-19.csv b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-19.csv new file mode 100644 index 0000000..8184f7c --- /dev/null +++ b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-19.csv @@ -0,0 +1,146 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host +11,2013_07_18_1,2013-07-18,H5N1 subtype,Karnataka (admin level 1),India,Aves +14,2013_07_05_4,2013-07-05,H7N9 subtype,Sechelt Indian Government District (admin level 2); Sunshine Coast Regional District (admin level 1),Canada,Homo sapiens +23,2017_02_07_11,2017-02-07,H5N8 subtype,Struga Municipality (admin level 1),Macedonia,Galliformes; Aves +24,2015_06_19_3,2015-06-19,H5N1 subtype,Amol County (admin level 2); Mazandaran Province (admin level 1),Iran,Aves; Galliformes +34,2016_10_03_1,2016-10-03,H5N5 subtype,Magellan and the Chilean Antarctic Region (admin level 1),Chile,Metazoa; Aves +38,2007_08_06_3,2007-07-24,H5N1 subtype,Yangon Region (admin level 1),Myanmar,Galliformes; Gallus gallus +41,2012_06_28_2,2012-06-13,H7N3 subtype,Jalisco (admin level 1),Mexico,Gallus gallus; Aves; Galliformes; Homo sapiens +55,2008_03_27_5,2008-03-27,H5N1 subtype,Luang Namtha Province (admin level 1),Laos,Gallus gallus; Aves; Anas +56,2009_11_20_1,2009-11-05,H5N3 subtype,Prague (admin level 1),Czech Republic,Aves +90,2016_09_09_4,2016-09-09,H5N8 subtype,"Ojeong-dong (baranggay sa Habagatang Korea, Gyeonggi-do) (admin level 2); Bucheon (admin level 1)",South Korea,Gallus gallus; Anas +104,2008_08_01_5,2008-08-01,H5N1 subtype,Thailand (country),Thailand,Homo sapiens +111,2007_12_18_5,2007-12-10,H5N1 subtype,Poland (country),Poland,Galliformes; Aves +126,2016_01_22_4,2016-01-22,H5N1 subtype,Nigeria (country),Nigeria,Aves +142,2008_11_14_4,2008-11-08,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +146,2012_09_20_1,2012-09-11,H5N1 subtype,People's Republic of China (country),People's Republic of China,Galliformes; Anas +201,2017_03_22_4,2017-03-22,H5N1 subtype,Malaysia (country),Malaysia,Gallus gallus; Galliformes; Aves +219,2016_12_06_10,2016-11-05,H5N8 subtype,Burundi (country),Burundi,Aves +240,2015_01_22_1,2014-12-29,H5N1 subtype,United States of America (country),United States of America,Galliformes; Aves +241,2016_02_08_3,2016-02-08,H5N2 subtype,South Africa (country),South Africa,Aves +268,2008_06_13_2,2008-06-13,H5N1 subtype,North Korea (country),North Korea,Galliformes; Gallus gallus +355,2013_11_26_1,2013-11-26,Influenza A virus,Germany (country),Germany,Aves; Homo sapiens +371,2015_11_25_1,2015-11-25,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +376,2014_04_21_2,2014-04-21,Influenza A virus,Japan (country),Japan,Gallus gallus; Aves +388,2007_11_30_3,2007-11-04,H5N1 subtype,Myanmar (country),Myanmar,Galliformes; Aves; Gallus gallus +421,2009_06_05_1,2009-06-05,H1N1 subtype,United States of America (country),United States of America,Aves; Sus scrofa +433,2017_02_01_7,2017-02-01,H5N8 subtype,Czech Republic (country),Czech Republic,Aves +442,2016_06_24_2,2016-06-07,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +443,2011_01_14_6,2011-01-14,H1N1 subtype,United States of America (country),United States of America,Aves; Galliformes; Gallus gallus +444,2014_12_23_4,2014-12-13,H5N1 subtype,Quang Ngai (admin level 2); Quảng Ngãi (admin level 1),Vietnam,Aves +457,2015_02_23_8,2015-02-02,H9N2 subtype,Egypt (country),Egypt,Galliformes; Homo sapiens +485,2017_03_03_4,2017-02-22,H5N8 subtype,South Korea (country),South Korea,Anas; Galliformes +505,2017_02_01_6,2017-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Aves +544,2017_08_25_4,2017-08-16,H9N2 subtype,Guangdong (admin level 1),People's Republic of China,Homo sapiens +545,2013_04_30_5,2013-04-24,H7N9 subtype,Taiwan (country),Taiwan,Homo sapiens; Galliformes +560,2008_04_30_5,2008-04-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes +563,2009_07_10_1,2009-07-10,H1N1 subtype,Canada (country),Canada,Sus scrofa +571,2012_03_12_4,2012-02-02,H5N2 subtype,Taiwan (country),Taiwan,Gallus gallus; Aves +582,2012_01_06_7,2012-01-06,H5N1 subtype,Zimbabwe (country),Zimbabwe,Homo sapiens +650,2011_02_28_4,2011-02-28,H5N1 subtype,Vietnam (country),Vietnam,Galliformes; Aves +655,2009_08_03_3,2009-07-24,H1N1 subtype,Australia (country),Australia,Sus scrofa; Galliformes +661,2008_10_24_1,2008-10-15,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Galliformes +670,2007_11_01_1,2007-11-01,H5N1 subtype,Florida Department (admin level 1),Uruguay,Aves; Homo sapiens +677,2014_04_29_4,2014-04-22,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Homo sapiens +693,2013_08_19_3,2013-08-19,H7N9 subtype,People's Republic of China (country),People's Republic of China,Homo sapiens; Aves +705,2015_10_30_2,2015-10-30,H5N2 subtype,South Korea (country),South Korea,Anas +712,2016_05_03_3,2016-05-03,H5N1 subtype,Vietnam (country),Vietnam,Aves +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves +762,2016_02_22_1,2016-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Corvus +805,2016_10_17_4,2016-10-17,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Sus scrofa; Anas +830,2016_10_17_5,2016-10-17,H5N1 subtype,Laos (country),Laos,Aves +841,2017_02_01_9,2017-02-01,H5N8 subtype,Italy (country),Italy,Aves +857,2008_01_18_1,2008-01-18,H5N1 subtype,Romania (country),Romania,Aves +877,2014_12_29_1,2014-12-29,H5N8 subtype,Russia (country),Russia,Gallus gallus; Galliformes; Aves +879,2006_12_01_3,2006-12-01,H5N1 subtype,Egypt (country),Egypt,Aves +880,2015_08_18_2,2015-08-18,H5N2 subtype,Mexico (country),Mexico,Aves; Galliformes +896,2007_09_14_1,2007-09-09,H5N1 subtype,North Dakota (admin level 1),United States of America,Anas +968,2013_10_28_6,2013-10-28,H5N1 subtype,Vietnam (country),Vietnam,Gallus gallus; Anas; Galliformes +1009,2017_06_27_5,2017-06-23,H5N2 subtype,Taiwan (country),Taiwan,Aves +1012,2016_12_01_1,2016-11-12,H5N8 subtype,Croatia (country),Croatia,Galliformes; Gallus gallus +1013,2014_04_29_2,2014-04-22,H5N8 subtype,Japan (country),Japan,Gallus gallus; Homo sapiens; Aves +1047,2016_01_29_1,2016-01-29,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Anas +1093,2015_08_07_2,2015-08-07,H5N1 subtype,Indonesia (country),Indonesia,Aves; Gallus gallus; Anas +1095,2014_12_29_6,2014-12-26,H7N9 subtype,Taiwan (country),Taiwan,Aves; Anas +1139,2015_07_20_5,2015-07-20,H5N2 subtype,Taiwan (country),Taiwan,Aves +1147,2014_12_19_2,2014-12-14,Influenza A virus,South Korea (country),South Korea,Gallus gallus +1165,2009_03_17_1,2009-03-15,H5N1 subtype,Neubrandenburg District (admin level 1),East Germany,Aves; Anser; Anas +1166,2009_03_17_1,2009-01-11,H5N1 subtype,Germany (country),Germany,Anser; Anas; Passeridae; Columbidae +1194,2015_02_06_8,2015-02-06,Influenza A virus,United Kingdom (country),United Kingdom,Aves +1210,2012_08_20_4,2012-08-09,H3N2 subtype,United States of America (country),United States of America,Homo sapiens; Sus scrofa +1251,2015_01_23_7,2015-01-23,H5N1 subtype,Jenin Governorate (admin level 2); West Bank (admin level 1),State of Palestine,Aves +1318,2009_12_14_1,2009-12-03,H1N1 subtype,Kabupaten Karawang (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens +1327,2008_08_01_1,2008-08-01,H5N1 subtype,South Korea (country),South Korea,Aves +1333,2006_12_15_2,2006-12-9,H5N1 subtype,South Korea (country),South Korea,Galliformes; Aves +1380,2012_02_02_3,2012-12-30,H5N1 subtype,India (country),India,Galliformes; Aves +1382,2015_01_23_5,2015-01-23,H5N8 subtype,Myanmar (country),Myanmar,Aves +1407,2017_01_10_2,2017-01-10,H5N8 subtype,Ireland (country),Ireland,Galliformes; Homo sapiens +1437,2016_01_22_3,2016-01-22,H5N1 subtype,India (country),India,Gallus gallus; Anas; Aves +1471,2015_09_30_5,2015-09-30,H5N1 subtype,Vietnam (country),Vietnam,Aves +1476,2014_01_09_3,2013-12-24,H7N7 subtype,South Africa (country),South Africa,Aves; Galliformes +1477,2010_06_07_2,2010-06-07,H5N1 subtype,Ukraine (country),Ukraine,Galliformes; Aves +1488,2013_02_11_1,2013-02-11,H5N1 subtype,Thailand (country),Thailand,Aves +1496,2010_11_18_3,2010-11-01,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens +1503,2013_04_12_6,2013-04-04,H5N1 subtype,Dong Thap Province (admin level 1),Vietnam,Gallus gallus; Homo sapiens +1561,2011_07_11_3,2011-07-11,Influenza A virus,South Africa (country),South Africa,Aves; Homo sapiens +1579,2015_06_05_4,2015-06-05,Influenza A virus,Turkey (country),Turkey,Gallus gallus; Aves +1610,2009_06_01_1,2009-05-22,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves +1611,2016_02_08_4,2016-02-08,H7N3 subtype,South Africa (country),South Africa,Aves; Anas +1620,2013_05_30_2,2013-05-30,H7N1 subtype,Catalonia (admin level 1),Spain,Galliformes +1623,2017_08_25_3,2017-08-22,H5N8 subtype,South Africa (country),South Africa,Aves; Gallus gallus +1634,2015_05_15_1,2015-05-15,H7N3 subtype,Chiapas (admin level 1),Mexico,Turdidae +1650,2017_02_07_7,2017-01-31,H5N1 subtype,Cambodia (country),Cambodia,Gallus gallus +1708,2014_03_20_2,2014-03-20,H5N1 subtype,People's Republic of China (country),People's Republic of China,Galliformes; Aves +1722,2010_01_20_6,2010-01-15,H3N2 subtype,Iowa (admin level 1),United States of America,Homo sapiens +1727,2016_12_29_1,2016-11-23,H5N8 subtype,South Korea (country),South Korea,Aves; Chroicocephalus ridibundus; Anas +1744,2014_01_09_1,2013-12-24,H5N2 subtype,People's Republic of China (country),People's Republic of China,Gallus gallus; Galliformes +1762,2011_06_20_3,2011-06-04,Influenza A virus,Germany (country),Germany,Aves +1814,2006_12_07_3,2006-12-07,H5N1 subtype,Quebec (admin level 1),Canada,Homo sapiens +1827,2014_12_09_2,2014-12-09,H5N8 subtype,Netherlands (country),Netherlands,Galliformes; Anas; Aves +1832,2014_04_29_1,2014-04-22,H5N1 subtype,North Korea (country),North Korea,Aves +1840,2017_02_07_9,2017-01-26,H5N5 subtype,Germany (country),Germany,Galliformes +1841,2011_06_20_2,2011-06-16,H5N1 subtype,Apriltsi Municipality (admin level 2); Lovech Province (admin level 1),Bulgaria,Galliformes; Homo sapiens +1908,2015_04_03_6,2015-03-27,Influenza A virus,Netherlands (country),Netherlands,Aves +1935,2010_01_12_1,2009-12-29,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Copsychus saularis; Aves; Homo sapiens +1964,2016_12_29_12,2016-12-15,Influenza A virus,Jerusalem District (admin level 1),Israel,Gallus gallus +1972,2015_01_23_8,2015-01-23,H5N3 subtype,Taiwan (country),Taiwan,Aves; Galliformes +1994,2016_05_06_4,2016-05-06,H5N8 subtype,Taiwan (country),Taiwan,Aves; Gallus gallus +1995,2015_03_20_5,2015-03-20,H7N7 subtype,Netherlands (country),Netherlands,Gallus gallus; Galliformes; Anser +1997,2016_07_29_1,2016-07-29,H5N8 subtype,United States of America (country),United States of America,Aves; Galliformes; Anas +2004,2009_02_06_7,2009-02-06,H5N2 subtype,British Columbia (admin level 1),Canada,Galliformes +2038,2012_04_12_3,2012-03-29,H5N2 subtype,Ireland (country),Ireland,Aves +2056,2007_09_28_3,2007-09-28,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes; Gallus gallus +2057,2015_10_28_2,2015-10-28,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves +2064,2016_12_13_11,2016-11-24,Influenza A virus,Tunisia (country),Tunisia,Aves +2065,2010_12_03_6,2010-11-10,H5N2 subtype,Germany (country),Germany,Aves; Homo sapiens +2081,2015_03_06_4,2015-03-06,H5N2 subtype,South Africa (country),South Africa,Aves +2096,2017_06_06_7,2017-05-17,H5N8 subtype,Zimbabwe (country),Zimbabwe,Aves +2097,2009_01_30_1,2009-01-30,H5N1 subtype,Phitsanulok (admin level 1),Thailand,Aves +2109,2017_05_12_4,2017-04-04,H7N3 subtype,Mexico (country),Mexico,Aves +2128,2015_01_30_1,2015-01-30,H5N1 subtype,Kuban-Black Sea Oblast (admin level 2); Russian Soviet Federative Socialist Republic (admin level 1),Soviet Union,Pelecanus crispus; Aves +2160,2014_01_22_5,2014-01-22,Influenza A virus,Can Tho (admin level 1),Vietnam,Galliformes; Homo sapiens +2169,2016_05_20_4,2016-05-20,H7N7 subtype,Italy (country),Italy,Aves +2184,2016_07_12_4,2016-07-12,H5N6 subtype,Vietnam (country),Vietnam,Aves +2188,2017_03_08_14,2017-03-08,H5N2 subtype,United States of America (country),United States of America,Aves +2199,2016_01_08_2,2016-01-08,H5N1 subtype,France (country),France,Galliformes; Aves +2205,2015_08_24_1,2015-08-24,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +2231,2017_01_23_6,2017-01-23,Influenza A virus,North Korea (country),North Korea,Aves; Homo sapiens +2253,2016_12_13_14,2016-12-13,H5N8 subtype,Iran (country),Iran,Aves; Galliformes +2254,2015_03_20_2,2015-03-20,H5N8 subtype,Sweden (country),Sweden,Galliformes +2270,2008_11_07_2,2008-11-07,H5N1 subtype,Tombali Region (admin level 1),Guinea-Bissau,Gallus gallus +2278,2017_03_22_14,2017-03-22,H5N6 subtype,Vietnam (country),Vietnam,Gallus gallus +2287,2017_09_28_1,2017-08-25,H5N8 subtype,Canton of Fribourg (admin level 1),Switzerland,Aves; Homo sapiens +2288,2015_01_30_5,2015-01-30,H7N9 subtype,Canada (country),Canada,Homo sapiens; Gallus gallus +2299,2007_04_16_2,2007-04-16,H5N1 subtype,Iran (country),Iran,Gallus gallus; Aves +2300,2017_03_22_8,2017-03-22,H5N6 subtype,South Korea (country),South Korea,Aves +2307,2016_03_21_4,2016-03-21,H5N1 subtype,Burkina Faso (country),Burkina Faso,Aves +2347,2009_01_14_4,2008-12-26,H5N1 subtype,Jiangsu Province (Republic of China) (admin level 1),Republic of China (1912–1949),Galliformes; Gallus gallus +2348,2009_01_14_4,2008-12-26,H5N1 subtype,Taiwan (country),Taiwan,Gallus gallus; Aves +2399,2014_11_03_4,2014-10-24,H5N1 subtype,Lhasa (admin level 2); Tibet (admin level 1),People's Republic of China,Gallus gallus; Anas +2435,2015_04_03_3,2015-04-02,H5N1 subtype,United States of America (country),United States of America,Aves; Galliformes +2463,2007_04_16_1,2007-04-16,H5N1 subtype,Japan (country),Japan,Aves; Aves +2479,2009_03_02_6,2009-03-02,H5N1 subtype,Phongsaly Province (admin level 1),Laos,Galliformes; Homo sapiens +2480,2011_08_29_1,2011-08-19,H5N1 subtype,Cambodia (country),Cambodia,Homo sapiens; Galliformes +2492,2017_03_08_5,2017-02-28,H5N8 subtype,United States of America (country),United States of America,Anas; Phasianidae +2499,2017_03_08_12,2017-03-08,Influenza A virus,arrondissement of Montélimar (admin level 2); Drôme (admin level 1),France,Aves; Homo sapiens +2507,2016_07_12_2,2016-07-04,H5N2 subtype,Canada (country),Canada,Aves diff --git a/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-30.csv b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-30.csv new file mode 100644 index 0000000..c649252 --- /dev/null +++ b/data/entity_resolver_output/er-out-unmatched-tuples-2018-11-30.csv @@ -0,0 +1,131 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host +11,2013_07_18_1,2013-07-18,H5N1 subtype,Karnataka (admin level 1),India,Aves +14,2013_07_05_4,2013-07-05,H7N9 subtype,Sechelt Indian Government District (admin level 2); Sunshine Coast Regional District (admin level 1),Canada,Homo sapiens +23,2017_02_07_11,2017-02-07,H5N8 subtype,Struga Municipality (admin level 1),Macedonia,Galliformes; Aves +24,2015_06_19_3,2015-06-19,H5N1 subtype,Amol County (admin level 2); Mazandaran Province (admin level 1),Iran,Aves; Galliformes +34,2016_10_03_1,2016-10-03,H5N5 subtype,Magellan and the Chilean Antarctic Region (admin level 1),Chile,Metazoa; Aves +38,2007_08_06_3,2007-07-24,H5N1 subtype,Yangon Region (admin level 1),Myanmar,Galliformes; Gallus gallus +41,2012_06_28_2,2012-06-13,H7N3 subtype,Jalisco (admin level 1),Mexico,Gallus gallus; Aves; Galliformes; Homo sapiens +55,2008_03_27_5,2008-03-27,H5N1 subtype,Luang Namtha Province (admin level 1),Laos,Gallus gallus; Aves; Anas +56,2009_11_20_1,2009-11-05,H5N3 subtype,Prague (admin level 1),Czech Republic,Aves +90,2016_09_09_4,2016-09-09,H5N8 subtype,"Ojeong-dong (baranggay sa Habagatang Korea, Gyeonggi-do) (admin level 2); Bucheon (admin level 1)",South Korea,Gallus gallus; Anas +104,2008_08_01_5,2008-08-01,H5N1 subtype,Thailand (country),Thailand,Homo sapiens +111,2007_12_18_5,2007-12-10,H5N1 subtype,Poland (country),Poland,Galliformes; Aves +142,2008_11_14_4,2008-11-08,H5N1 subtype,Egypt (country),Egypt,Homo sapiens +201,2017_03_22_4,2017-03-22,H5N1 subtype,Malaysia (country),Malaysia,Gallus gallus; Galliformes; Aves +219,2016_12_06_10,2016-11-05,H5N8 subtype,Burundi (country),Burundi,Aves +240,2015_01_22_1,2014-12-29,H5N1 subtype,United States of America (country),United States of America,Galliformes; Aves +241,2016_02_08_3,2016-02-08,H5N2 subtype,South Africa (country),South Africa,Aves +268,2008_06_13_2,2008-06-13,H5N1 subtype,North Korea (country),North Korea,Galliformes; Gallus gallus +355,2013_11_26_1,2013-11-26,Influenza A virus,Germany (country),Germany,Aves; Homo sapiens +376,2014_04_21_2,2014-04-21,Influenza A virus,Japan (country),Japan,Gallus gallus; Aves +388,2007_11_30_3,2007-11-04,H5N1 subtype,Myanmar (country),Myanmar,Galliformes; Aves; Gallus gallus +421,2009_06_05_1,2009-06-05,H1N1 subtype,United States of America (country),United States of America,Aves; Sus scrofa +433,2017_02_01_7,2017-02-01,H5N8 subtype,Czech Republic (country),Czech Republic,Aves +443,2011_01_14_6,2011-01-14,H1N1 subtype,United States of America (country),United States of America,Aves; Galliformes; Gallus gallus +444,2014_12_23_4,2014-12-13,H5N1 subtype,Quang Ngai (admin level 2); Quảng Ngãi (admin level 1),Vietnam,Aves +457,2015_02_23_8,2015-02-02,H9N2 subtype,Egypt (country),Egypt,Galliformes; Homo sapiens +485,2017_03_03_4,2017-02-22,H5N8 subtype,South Korea (country),South Korea,Anas; Galliformes +505,2017_02_01_6,2017-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Aves +544,2017_08_25_4,2017-08-16,H9N2 subtype,Guangdong (admin level 1),People's Republic of China,Homo sapiens +545,2013_04_30_5,2013-04-24,H7N9 subtype,Taiwan (country),Taiwan,Homo sapiens; Galliformes +560,2008_04_30_5,2008-04-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes +563,2009_07_10_1,2009-07-10,H1N1 subtype,Canada (country),Canada,Sus scrofa +582,2012_01_06_7,2012-01-06,H5N1 subtype,Zimbabwe (country),Zimbabwe,Homo sapiens +655,2009_08_03_3,2009-07-24,H1N1 subtype,Australia (country),Australia,Sus scrofa; Galliformes +670,2007_11_01_1,2007-11-01,H5N1 subtype,Florida Department (admin level 1),Uruguay,Aves; Homo sapiens +677,2014_04_29_4,2014-04-22,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Homo sapiens +705,2015_10_30_2,2015-10-30,H5N2 subtype,South Korea (country),South Korea,Anas +712,2016_05_03_3,2016-05-03,H5N1 subtype,Vietnam (country),Vietnam,Aves +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves +762,2016_02_22_1,2016-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Corvus +805,2016_10_17_4,2016-10-17,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Sus scrofa; Anas +830,2016_10_17_5,2016-10-17,H5N1 subtype,Laos (country),Laos,Aves +841,2017_02_01_9,2017-02-01,H5N8 subtype,Italy (country),Italy,Aves +857,2008_01_18_1,2008-01-18,H5N1 subtype,Romania (country),Romania,Aves +877,2014_12_29_1,2014-12-29,H5N8 subtype,Russia (country),Russia,Gallus gallus; Galliformes; Aves +879,2006_12_01_3,2006-12-01,H5N1 subtype,Egypt (country),Egypt,Aves +880,2015_08_18_2,2015-08-18,H5N2 subtype,Mexico (country),Mexico,Aves; Galliformes +896,2007_09_14_1,2007-09-09,H5N1 subtype,North Dakota (admin level 1),United States of America,Anas +1009,2017_06_27_5,2017-06-23,H5N2 subtype,Taiwan (country),Taiwan,Aves +1012,2016_12_01_1,2016-11-12,H5N8 subtype,Croatia (country),Croatia,Galliformes; Gallus gallus +1013,2014_04_29_2,2014-04-22,H5N8 subtype,Japan (country),Japan,Gallus gallus; Homo sapiens; Aves +1093,2015_08_07_2,2015-08-07,H5N1 subtype,Indonesia (country),Indonesia,Aves; Gallus gallus; Anas +1095,2014_12_29_6,2014-12-26,H7N9 subtype,Taiwan (country),Taiwan,Aves; Anas +1139,2015_07_20_5,2015-07-20,H5N2 subtype,Taiwan (country),Taiwan,Aves +1147,2014_12_19_2,2014-12-14,Influenza A virus,South Korea (country),South Korea,Gallus gallus +1165,2009_03_17_1,2009-03-15,H5N1 subtype,Neubrandenburg District (admin level 1),East Germany,Aves; Anser; Anas +1166,2009_03_17_1,2009-01-11,H5N1 subtype,Germany (country),Germany,Anser; Anas; Passeridae; Columbidae +1194,2015_02_06_8,2015-02-06,Influenza A virus,United Kingdom (country),United Kingdom,Aves +1210,2012_08_20_4,2012-08-09,H3N2 subtype,United States of America (country),United States of America,Homo sapiens; Sus scrofa +1251,2015_01_23_7,2015-01-23,H5N1 subtype,Jenin Governorate (admin level 2); West Bank (admin level 1),State of Palestine,Aves +1318,2009_12_14_1,2009-12-03,H1N1 subtype,Kabupaten Karawang (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens +1327,2008_08_01_1,2008-08-01,H5N1 subtype,South Korea (country),South Korea,Aves +1333,2006_12_15_2,2006-12-9,H5N1 subtype,South Korea (country),South Korea,Galliformes; Aves +1380,2012_02_02_3,2012-12-30,H5N1 subtype,India (country),India,Galliformes; Aves +1382,2015_01_23_5,2015-01-23,H5N8 subtype,Myanmar (country),Myanmar,Aves +1407,2017_01_10_2,2017-01-10,H5N8 subtype,Ireland (country),Ireland,Galliformes; Homo sapiens +1437,2016_01_22_3,2016-01-22,H5N1 subtype,India (country),India,Gallus gallus; Anas; Aves +1476,2014_01_09_3,2013-12-24,H7N7 subtype,South Africa (country),South Africa,Aves; Galliformes +1477,2010_06_07_2,2010-06-07,H5N1 subtype,Ukraine (country),Ukraine,Galliformes; Aves +1488,2013_02_11_1,2013-02-11,H5N1 subtype,Thailand (country),Thailand,Aves +1503,2013_04_12_6,2013-04-04,H5N1 subtype,Dong Thap Province (admin level 1),Vietnam,Gallus gallus; Homo sapiens +1561,2011_07_11_3,2011-07-11,Influenza A virus,South Africa (country),South Africa,Aves; Homo sapiens +1579,2015_06_05_4,2015-06-05,Influenza A virus,Turkey (country),Turkey,Gallus gallus; Aves +1610,2009_06_01_1,2009-05-22,H5N1 subtype,Arkhangai Province (admin level 1),Mongolia,Aves +1611,2016_02_08_4,2016-02-08,H7N3 subtype,South Africa (country),South Africa,Aves; Anas +1620,2013_05_30_2,2013-05-30,H7N1 subtype,Catalonia (admin level 1),Spain,Galliformes +1623,2017_08_25_3,2017-08-22,H5N8 subtype,South Africa (country),South Africa,Aves; Gallus gallus +1634,2015_05_15_1,2015-05-15,H7N3 subtype,Chiapas (admin level 1),Mexico,Turdidae +1650,2017_02_07_7,2017-01-31,H5N1 subtype,Cambodia (country),Cambodia,Gallus gallus +1722,2010_01_20_6,2010-01-15,H3N2 subtype,Iowa (admin level 1),United States of America,Homo sapiens +1727,2016_12_29_1,2016-11-23,H5N8 subtype,South Korea (country),South Korea,Aves; Chroicocephalus ridibundus; Anas +1744,2014_01_09_1,2013-12-24,H5N2 subtype,People's Republic of China (country),People's Republic of China,Gallus gallus; Galliformes +1762,2011_06_20_3,2011-06-04,Influenza A virus,Germany (country),Germany,Aves +1814,2006_12_07_3,2006-12-07,H5N1 subtype,Quebec (admin level 1),Canada,Homo sapiens +1827,2014_12_09_2,2014-12-09,H5N8 subtype,Netherlands (country),Netherlands,Galliformes; Anas; Aves +1832,2014_04_29_1,2014-04-22,H5N1 subtype,North Korea (country),North Korea,Aves +1840,2017_02_07_9,2017-01-26,H5N5 subtype,Germany (country),Germany,Galliformes +1841,2011_06_20_2,2011-06-16,H5N1 subtype,Apriltsi Municipality (admin level 2); Lovech Province (admin level 1),Bulgaria,Galliformes; Homo sapiens +1908,2015_04_03_6,2015-03-27,Influenza A virus,Netherlands (country),Netherlands,Aves +1935,2010_01_12_1,2009-12-29,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Copsychus saularis; Aves; Homo sapiens +1964,2016_12_29_12,2016-12-15,Influenza A virus,Jerusalem District (admin level 1),Israel,Gallus gallus +1972,2015_01_23_8,2015-01-23,H5N3 subtype,Taiwan (country),Taiwan,Aves; Galliformes +1994,2016_05_06_4,2016-05-06,H5N8 subtype,Taiwan (country),Taiwan,Aves; Gallus gallus +1995,2015_03_20_5,2015-03-20,H7N7 subtype,Netherlands (country),Netherlands,Gallus gallus; Galliformes; Anser +1997,2016_07_29_1,2016-07-29,H5N8 subtype,United States of America (country),United States of America,Aves; Galliformes; Anas +2004,2009_02_06_7,2009-02-06,H5N2 subtype,British Columbia (admin level 1),Canada,Galliformes +2038,2012_04_12_3,2012-03-29,H5N2 subtype,Ireland (country),Ireland,Aves +2056,2007_09_28_3,2007-09-28,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes; Gallus gallus +2057,2015_10_28_2,2015-10-28,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves +2064,2016_12_13_11,2016-11-24,Influenza A virus,Tunisia (country),Tunisia,Aves +2065,2010_12_03_6,2010-11-10,H5N2 subtype,Germany (country),Germany,Aves; Homo sapiens +2081,2015_03_06_4,2015-03-06,H5N2 subtype,South Africa (country),South Africa,Aves +2096,2017_06_06_7,2017-05-17,H5N8 subtype,Zimbabwe (country),Zimbabwe,Aves +2097,2009_01_30_1,2009-01-30,H5N1 subtype,Phitsanulok (admin level 1),Thailand,Aves +2109,2017_05_12_4,2017-04-04,H7N3 subtype,Mexico (country),Mexico,Aves +2160,2014_01_22_5,2014-01-22,Influenza A virus,Can Tho (admin level 1),Vietnam,Galliformes; Homo sapiens +2169,2016_05_20_4,2016-05-20,H7N7 subtype,Italy (country),Italy,Aves +2184,2016_07_12_4,2016-07-12,H5N6 subtype,Vietnam (country),Vietnam,Aves +2188,2017_03_08_14,2017-03-08,H5N2 subtype,United States of America (country),United States of America,Aves +2199,2016_01_08_2,2016-01-08,H5N1 subtype,France (country),France,Galliformes; Aves +2205,2015_08_24_1,2015-08-24,H5N6 subtype,People's Republic of China (country),People's Republic of China,Aves +2231,2017_01_23_6,2017-01-23,Influenza A virus,North Korea (country),North Korea,Aves; Homo sapiens +2253,2016_12_13_14,2016-12-13,H5N8 subtype,Iran (country),Iran,Aves; Galliformes +2254,2015_03_20_2,2015-03-20,H5N8 subtype,Sweden (country),Sweden,Galliformes +2270,2008_11_07_2,2008-11-07,H5N1 subtype,Tombali Region (admin level 1),Guinea-Bissau,Gallus gallus +2278,2017_03_22_14,2017-03-22,H5N6 subtype,Vietnam (country),Vietnam,Gallus gallus +2287,2017_09_28_1,2017-08-25,H5N8 subtype,Canton of Fribourg (admin level 1),Switzerland,Aves; Homo sapiens +2288,2015_01_30_5,2015-01-30,H7N9 subtype,Canada (country),Canada,Homo sapiens; Gallus gallus +2299,2007_04_16_2,2007-04-16,H5N1 subtype,Iran (country),Iran,Gallus gallus; Aves +2300,2017_03_22_8,2017-03-22,H5N6 subtype,South Korea (country),South Korea,Aves +2307,2016_03_21_4,2016-03-21,H5N1 subtype,Burkina Faso (country),Burkina Faso,Aves +2348,2009_01_14_4,2008-12-26,H5N1 subtype,Taiwan (country),Taiwan,Gallus gallus; Aves +2399,2014_11_03_4,2014-10-24,H5N1 subtype,Lhasa (admin level 2); Tibet (admin level 1),People's Republic of China,Gallus gallus; Anas +2435,2015_04_03_3,2015-04-02,H5N1 subtype,United States of America (country),United States of America,Aves; Galliformes +2463,2007_04_16_1,2007-04-16,H5N1 subtype,Japan (country),Japan,Aves; Aves +2479,2009_03_02_6,2009-03-02,H5N1 subtype,Phongsaly Province (admin level 1),Laos,Galliformes; Homo sapiens +2480,2011_08_29_1,2011-08-19,H5N1 subtype,Cambodia (country),Cambodia,Homo sapiens; Galliformes +2492,2017_03_08_5,2017-02-28,H5N8 subtype,United States of America (country),United States of America,Anas; Phasianidae +2499,2017_03_08_12,2017-03-08,Influenza A virus,arrondissement of Montélimar (admin level 2); Drôme (admin level 1),France,Aves; Homo sapiens +2507,2016_07_12_2,2016-07-04,H5N2 subtype,Canada (country),Canada,Aves diff --git a/data/entity_resolver_output/selected-epidemic-tuples-2018-11-19.csv b/data/entity_resolver_output/selected-epidemic-tuples-2018-11-19.csv new file mode 100644 index 0000000..bbbece4 --- /dev/null +++ b/data/entity_resolver_output/selected-epidemic-tuples-2018-11-19.csv @@ -0,0 +1,69 @@ +index,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports,true_positive,missing_reports +113,flu_00114,2006-12-26 to 2007-04-06,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Phitsanulok (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Merops philippinus; Galliformes; Aves; Anas; Columbidae; Gallus gallus; Aegypius monachus,2007_02_07_4; 2007_04_06_2; 2007_01_22_2; 2010_11_05_1,1, +124,flu_00125,2013-05-30 to 2013-05-30,H7N9 subtype,Beijing (admin level 1); Bar Municipality (admin level 1),Montenegro,Homo sapiens,2013_05_30_4,1, +237,flu_00238,2009-10-07 to 2009-11-16,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Nan (admin level 1)",Thailand,Aves; Anas; Galliformes,2009_11_20_6,1, +197,flu_00198,2014-12-20 to 2015-2-2,H5N8 subtype,"Grays Harbor County (admin level 2), Washington (admin level 1); Nevada (admin level 1); Clark County (admin level 2), Kansas (admin level 1); California (admin level 1); Oregon (admin level 1); Deschutes County (admin level 2), Oregon (admin level 1); Kings County (admin level 2), New York (admin level 1); Washington (admin level 1); Baja California Sur (admin level 1); Winston County (admin level 2), Mississippi (admin level 1); Canyon County (admin level 2), Idaho (admin level 1)",United States of America,Aves; Mareca americana; Gallus gallus; Anas; Galliformes,2014_12_29_4; 2015_02_23_6; 2015_03_02_3; 2015_03_06_1; 2015_01_16_1; 2015_02_23_7; 2015_02_06_9; 2014_12_23_3,1, +71,flu_00072,2015-03-02 to 2015-05-22,H5N1 subtype,"Vinh Long (cidade) (admin level 2), Vĩnh Long (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2015_05_22_6; 2015_03_20_7; 2015_03_02_9; 2015_04_17_6,1, +285,flu_00286,2011-03-16 to 2011-03-29,H5N1 subtype,Sagaing Region (admin level 1),Myanmar,Gallus gallus; Galliformes,2011_03_29_6,1, +144,flu_00145,2011-04-05 to 2011-04-05,H7N3 subtype,"Missouri (admin level 1); Polk County (admin level 2), Iowa (admin level 1)",United States of America,Phasianidae; Aves; Galliformes,2011_04_05_5,1, +161,flu_00162,2005-12-26 to 2005-12-26,H5N1 subtype,Hunan (admin level 1),People's Republic of China,Gallus gallus; Anas,2008_06_06_1,1, +12,flu_00013,2008-12-12 to 2009-05-05,H5N1 subtype,"Qinghai (admin level 1); Hunan (admin level 1); Yulin (admin level 2), Shaanxi (admin level 1); Beijing (admin level 1); Huaihua (admin level 2), Hunan (admin level 1); Guizhou (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Lhasa (admin level 2), Tibet (admin level 1); Saint Thomas Lowland Parish (admin level 1); Xinjiang (admin level 1)",People's Republic of China,Anser; Homo sapiens; Galliformes; Passeridae; Aves; Anas; Gallus gallus,2009_02_13_3; 2008_12_12_2; 2009_03_10_1; 2009_01_30_5; 2009_01_14_9; 2009_01_14_8; 2009_02_06_3; 2009_03_17_4; 2009_05_11_2; 2009_03_02_1; 2009_01_14_1; 2009_02_23_2; 2009_05_22_1; 2009_01_21_4; 2009_02_06_8; 2009_04_28_2,0,2008_10_24_1 +7,flu_00008,2007-03-20 to 2007-03-23,H5N1 subtype,Kunar (admin level 1); Nangarhar (admin level 1); Kabul Province (admin level 1),Afghanistan,Aves; Galliformes,2007_04_02_2; 2007_03_20_3,1, +125,flu_00126,2017-07-05 to 2017-07-06,H3N8 subtype,United States of America (country),United States of America,Aves; Homo sapiens,2017_07_14_1; 2017_07_05_1,1, +114,flu_00115,2011-09-15 to 2011-09-15,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Galliformes,2011_09_15_8,0,2011_02_28_4; 2011_04_05_3; 2011_04_28_5; 2011_05_25_2; 2011_06_10_1; 2011_08_02_2; 2011_09_15_3 +156,flu_00157,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves; Sus scrofa,2006_12_01_1,1, +8,flu_00009,2016-08-19 to 2016-08-25,H9N2 subtype,Yunnan (admin level 1); Jiangxi (admin level 1),People's Republic of China,Homo sapiens,2016_09_09_5,1, +24,flu_00025,2016-11-28 to 2017-1-24,H5N8 subtype,Aomori Prefecture (admin level 1); Niigata Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas; Homo sapiens,2016_12_06_13; 2017_02_01_10; 2016_12_13_16,1, +80,flu_00081,2009-10-26 to 2009-10-26,H5N1 subtype,Tuva Republic (admin level 1); Moscow (admin level 1),Russia,Aves; Podicipedidae; Galliformes,2009_11_06_1,1, +84,flu_00085,2016-10-03 to 2016-11-25,H5N2 subtype,South Africa (country),South Africa,Aves,2016_12_06_17; 2016_10_03_3,1, +275,flu_00276,2016-04-20 to 2016-06-20,H5N2 subtype,Taichung (admin level 1); Taipei (admin level 1),Taiwan,Gallus gallus; Galliformes,2016_04_20_3; 2016_05_20_6; 2016_06_24_5,1, +226,flu_00227,2016-06-07 to 2016-06-19,H9N2 subtype,People's Republic of China (country),People's Republic of China,Aves; Gallus gallus; Homo sapiens,2016_06_24_6; 2016_06_07_1,1, +216,flu_00217,2008-12-12 to 2008-12-12,H5N1 subtype,"Kamrup district (admin level 2), Assam (admin level 1)",India,Aves; Galliformes,2008_12_12_3,0,2009_01_14_5; 2009_02_06_4; 2009_02_23_6; 2009_03_02_2; 2009_03_02_4; 2009_03_23_2; 2009_03_23_1; 2009_04_08_2; 2009_05_01_2; 2009_05_01_1; 2009_06_05_2; 2009_06_12_2 +310,flu_00311,2015-11-13 to 2015-11-13,H5N2 subtype,Emilia-Romagna (admin level 1),Italy,Aves; Anas,2015_11_13_1,1, +105,flu_00106,2013-02-01 to 2013-05-23,H5N1 subtype,Tibet (admin level 1); Guizhou (admin level 1); Tibet Autonomous Region (admin level 1); Shanghai (admin level 1); Hong Kong (admin level 1); Zhejiang (admin level 1),People's Republic of China,Anser; Homo sapiens; Galliformes; Aves; Chroicocephalus ridibundus; Gallus gallus,2013_02_01_1; 2013_02_15_3; 2013_03_01_4; 2013_04_12_3; 2013_05_23_4,1, +117,flu_00118,2016-07-26 to 2016-07-26,H7N9 subtype,Jiangsu (admin level 1); Zhejiang (admin level 1),People's Republic of China,Homo sapiens,2016_07_26_2,0,2015_10_16_5; 2015_11_13_4; 2016_01_15_7; 2015_11_25_6; 2016_01_08_7; 2016_01_29_4; 2016_02_22_7; 2016_02_16_3; 2016_02_08_7; 2016_02_29_5; 2016_05_06_7; 2016_03_21_8; 2016_03_14_9; 2016_04_26_11; 2016_04_26_10; 2016_05_20_7; 2016_05_27_2; 2016_06_10_2; 2016_06_17_4; 2016_06_07_8; 2016_07_12_5; 2016_09_01_3; 2016_07_29_5 +100,flu_00101,2009-01-14 to 2009-06-12,H5N1 subtype,"Manipur (admin level 1); Balrampur district (admin level 2), Uttar Pradesh (admin level 1); Districte de North Dinajpur (admin level 2), West Bengal (admin level 1); West Bengal (admin level 1); Uttar Dinajpur district (admin level 2), West Bengal (admin level 1); Darjeeling District (admin level 2), West Bengal (admin level 1); Darjeeling (admin level 2), West Bengal (admin level 1); Assam (admin level 1)",India,Aves; Gallus gallus; Anas; Anser; Galliformes,2009_02_06_4; 2009_03_23_2; 2009_04_08_2; 2009_02_23_6; 2009_01_14_5; 2009_05_01_2; 2009_06_12_2; 2009_06_05_2; 2009_06_01_2; 2009_03_02_4; 2009_05_01_1; 2009_03_23_1; 2009_03_02_2,0,should be matched with the tuples in epidemic no. 216 +52,flu_00053,2012-11-15 to 2013-05-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Homo sapiens; Galliformes,2012_12_27_1; 2013_02_11_2; 2012_02_02_11; 2013_04_30_4; 2012_11_15_1; 2013_05_03_1,1, +232,flu_00233,2006-12-15 to 2006-12-15,H5N1 subtype,Little India (admin level 2),Singapore,Aves; Columbidae; Anser; Passeridae,2006_12_15_1,1, +215,flu_00216,2017-05-05 to 2017-05-05,H5N8 subtype,England (admin level 1),United Kingdom,Aves; Gallus gallus,2017_05_12_11,1, +225,flu_00226,2007-11-14 to 2007-11-14,H5N1 subtype,Riyadh Region (admin level 1),Saudi Arabia,Aves; Gallus gallus; Galliformes,2007_11_23_2,1, +171,flu_00172,2008-06-19 to 2008-09-22,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Ben Tre (admin level 1); Long An (admin level 1)",Vietnam,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2008_08_11_4; 2008_08_22_2; 2008_08_15_4; 2008_07_18_2; 2008_10_02_2; 2008_06_19_3,1, +332,flu_00333,2016-01-08 to 2016-01-11,Influenza A virus,Taichung (admin level 1),Taiwan,Passeridae,2016_01_15_1,1, +291,flu_00292,2017-03-22 to 2017-03-22,H5N1 subtype,"Tây Ninh (admin level 2), Tay Ninh Province (admin level 1)",Vietnam,Aves; Galliformes,2017_03_22_13,1, +305,flu_00306,2016-04-13 to 2016-04-13,H5N9 subtype,Veliko Tarnovo Province (admin level 1),Bulgaria,Gallus gallus; Anas; Homo sapiens; Galliformes,2016_04_26_2,1, +153,flu_00154,2010-09-10 to 2010-09-10,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1)",Thailand,Aves,2010_09_10_1,1, +252,flu_00253,2015-06-26 to 2015-06-26,H5N1 subtype,Sohag Governorate (admin level 1),Egypt,Homo sapiens,2015_06_26_5,1, +55,flu_00056,2007-12-14 to 2007-12-25,H5N1 subtype,"Berlin (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1); Lower Saxony (admin level 1); Neubrandenburg District (admin level 1)",Germany,Aves; Gallus gallus; Galliformes,2007_12_21_3; 2008_01_04_5; 2008_10_09_4; 2008_01_25_3,1, +139,flu_00140,2011-05-18 to 2011-06-19,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Homo sapiens; Galliformes,2011_05_18_1; 2011_06_20_4,1, +40,flu_00041,2011-09-15 to 2012-01-07,H5N1 subtype,"Denpasar (admin level 2), Bali (admin level 1); Special Region of Yogyakarta (admin level 1); Mataram (admin level 2), West Nusa Tenggara (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); South Sulawesi (admin level 1); North Jakarta (admin level 2), Jakarta (admin level 1); North Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Bali (admin level 1); Central Java Province (admin level 1); Kabupatèn Lombok Wétan (admin level 2), West Nusa Tenggara (admin level 1)",Indonesia,Aves; Gallus gallus; Homo sapiens; Galliformes,2011_12_06_3; 2011_10_07_1; 2012_02_02_8; 2011_11_17_9; 2011_10_18_1; 2011_10_24_1; 2011_10_31_1; 2011_09_21_4; 2011_10_24_2; 2011_09_15_4; 2011_10_18_3,0,2012_02_22_6; 2012_02_29_6; 2012_03_12_5; 2012_04_09_4; 2012_04_12_6; 2012_04_16_1 +20,flu_00021,2016-01-02 to 2016-06-10,H5N1 subtype,Benue-Plateau State (admin level 1); Plateau State (admin level 1); Kaduna State (admin level 1),Nigeria,Aves,2016_06_10_3; 2016_01_15_3; 2016_01_29_3; 2016_01_08_3; 2016_03_14_5; 2016_02_22_4; 2016_04_11_3,0,2016_07_05_3; 2015_07_10_2; 2015_07_20_3; 2015_07_31_4; 2015_08_07_5; 2015_08_24_5; 2015_08_28_2; 2015_09_18_3; 2015_09_30_2; 2015_10_05_3; 2015_11_20_3 +158,flu_00159,2015-03-27 to 2015-03-27,H5N1 subtype,"Obshtina Iskŭr (munisipyo sa Bulgaria) (admin level 2), Pleven Province (admin level 1); Burgas Province (admin level 1); Silistra Province (admin level 1)",Bulgaria,Chroicocephalus ridibundus; Pelecanidae; Galliformes,2015_03_27_1,1, +79,flu_00080,2015-07-10 to 2015-11-20,H5N1 subtype,Bayelsa State (admin level 1); Lagos (admin level 1); Kano State (admin level 1),Nigeria,Aves; Gallus gallus; Anas; Homo sapiens,2015_09_30_2; 2015_08_07_5; 2015_08_28_2; 2015_09_18_3; 2015_07_31_4; 2015_08_24_5; 2015_07_10_2; 2015_07_20_3; 2015_11_20_3; 2015_10_05_3,0,should be matched with the tuples in epidemic no. 20 +243,flu_00244,2016-11-21 to 2016-11-23,H5N1 subtype,Bauchi State (admin level 1); Kano State (admin level 1),Nigeria,Gallus gallus; Anas,2016_12_06_15,1, +62,flu_00063,2012-06-11 to 2012-06-11,Influenza A virus,Amur Oblast (admin level 1),Russia,Galliformes,2012_06_11_5,1, +235,flu_00236,2015-03-31 to 2015-03-31,H5N1 subtype,"Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Homo sapiens,2015_04_03_9,1, +129,flu_00130,2015-04-17 to 2015-05-15,H5N2 subtype,Taichung (admin level 1),Taiwan,Aves; Anas,2015_04_17_5; 2015_05_15_3,1, +39,flu_00040,2006-11-14 to 2007-06-04,H5N1 subtype,"Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Hunan (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1); Hong Kong (admin level 1); Lhasa (admin level 2), Tibet (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Homo sapiens; Falco peregrinus; Corvus splendens; Galliformes; Psittacidae; Pionus menstruus; Aves; Anas; Pica pica; Lonchura punctulata; Gallus gallus; Sturnus sericeus; Lanius schach; Sturnus vulgaris,2007_03_20_1; 2007_01_18_1; 2007_04_06_1; 2007_03_08_1; 2007_05_30_2; 2007_02_16_1; 2007_01_08_2; 2007_06_12_1; 2007_06_22_1; 2007_06_01_1; 2006_11_14_1; 2007_01_22_1; 2007_06_15_1; 2007_02_07_1,0,2006_12_07_1 +262,flu_00263,2017-02-20 to 2017-02-20,H5N8 subtype,Catalonia (admin level 1),Spain,Ciconia ciconia; Anser; Aves; Galliformes,2017_03_03_1,1, +6,flu_00007,2007-09-21 to 2008-03-14,H5N1 subtype,"Guizhou (admin level 1); Turpan (admin level 2), Xinjiang (admin level 1); Hong Kong (admin level 1); Guangdong (admin level 1); Cheung Prey District (admin level 2), Kampong Cham Province (admin level 1)",People's Republic of China,Homo sapiens; Galliformes; Aves; Anas; Egretta garzetta; Gallus gallus,2007_11_30_1; 2008_01_10_4; 2008_03_14_1; 2007_09_21_2; 2008_03_27_3; 2008_02_20_1; 2008_03_03_3; 2008_02_08_1; 2008_03_07_1; 2007_12_18_1,0,"none missing, but the date range isn't accurate" +274,flu_00275,2011-11-17 to 2011-11-17,H5N1 subtype,Maine (admin level 1),United States of America,Aves,2011_11_17_1,0,2011_07_06_4; 2011_08_11_3; 2011_09_30_1; 2011_11_17_1 +33,flu_00034,2013-10-28 to 2014-06-09,H7N9 subtype,"Yangjiang (admin level 2), Guangdong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Zhejiang (admin level 1); Guangdong (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1)",People's Republic of China,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2014_01_22_6; 2014_01_31_6; 2014_01_31_3; 2014_01_31_2; 2014_04_10_4; 2014_04_10_9; 2013_12_06_3; 2016_10_03_6; 2014_06_23_3; 2014_03_07_7; 2014_03_07_6; 2013_10_28_4; 2014_02_19_12; 2014_03_07_2; 2014_02_07_3; 2013_12_13_2; 2014_01_09_10; 2014_02_19_1; 2014_03_07_13; 2013_11_08_4; 2014_01_09_7,0,2014_06_17_2; 2014_07_21_1; 2014_11_03_10; 2014_10_24_5; 2014_11_12_2; 2014_12_09_5; 2014_12_29_9; 2014_12_16_3; 2014_12_23_5; 2015_01_08_6; 2015_01_08_11; 2015_02_13_5; 2015_01_30_6; 2015_03_02_11; 2015_03_06_6; 2015_05_01_8; 2015_05_29_7; 2015_06_12_5 +152,flu_00153,2012-05-22 to 2012-05-22,H5N1 subtype,Tripura (admin level 1),India,Aves; Galliformes,2012_05_22_1,1, +217,flu_00218,2011-06-22 to 2011-06-22,H5N1 subtype,Lower Saxony (admin level 1); North Rhine-Westphalia (admin level 1),Germany,Aves,2011_07_06_2,1, +21,flu_00022,2010-09-21 to 2011-05-31,H5N1 subtype,"Soppeng (admin level 2), South Sulawesi (admin level 1); Bangka Tengah (admin level 2), Bangka Belitung Islands (admin level 1); South Tangerang (admin level 2), Banten Province (admin level 1); Samarinda (admin level 2), East Kalimantan (admin level 1); North Sulawesi Province (admin level 1); Luwu Utara (admin level 2), South Sulawesi (admin level 1); Bali (admin level 1); North Padang Lawas Regency (admin level 2), North Sumatra Province (admin level 1); Kalimantan Selatan (admin level 1); Badung Regency (admin level 2), Bali (admin level 1); Kotamobagu (admin level 2), North Sulawesi Province (admin level 1); Bolaang Mongondow Utara (admin level 2), North Sulawesi Province (admin level 1); Gunungkidul (admin level 2), Special Region of Yogyakarta (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Padangsidimpuan (admin level 2), North Sumatra Province (admin level 1); Surabaya (admin level 2), East Java (admin level 1); Gorontalo Province (admin level 1); Balikpapan (admin level 2), East Kalimantan (admin level 1); Lampung Province (admin level 1); Bengkulu Province (admin level 1); Desa Bangli (admin level 2), Bali (admin level 1); kabupaten de Bandung occidental (admin level 2), West Java Province (admin level 1); West Sumatra (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Kobarid Municipality (admin level 1); Jambi Province (admin level 1); Riau Islands Province (admin level 1); West Java Province (admin level 1); Tabanan Regency (admin level 2), Bali (admin level 1); East Java (admin level 1)",Indonesia,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2010_12_09_6; 2011_05_31_1; 2011_01_28_7; 2011_02_11_9; 2011_04_05_1; 2011_01_28_4; 2011_02_28_3; 2011_04_12_2; 2011_04_28_2; 2010_10_01_1; 2011_01_24_3; 2011_02_22_5; 2011_05_18_5; 2011_01_14_4; 2010_10_27_1; 2010_12_03_7; 2011_03_22_6; 2010_12_17_2; 2010_10_08_1; 2011_03_29_7; 2011_03_29_4,0,2009_11_20_2; 2010_01_12_8; 2010_02_19_4; 2010_01_20_5; 2010_02_03_6; 2010_02_03_2; 2010_01_27_4; 2010_03_01_5; 2010_03_19_1; 2010_03_26_4; 2010_04_26_3; 2010_05_04_3; 2010_05_10_3; 2010_05_17_2; 2010_06_07_5; 2010_05_28_3; 2010_07_02_4; 2010_07_23_2; 2010_07_23_1; 2010_06_29_3; 2010_08_06_1; 2010_08_06_2; 2010_08_16_6; 2010_08_20_4; 2010_08_16_4; 2010_08_18_4; 2010_08_20_1; 2010_08_26_2; 2010_09_09_2; 2011_06_10_3; 2011_06_20_1; 2011_07_11_2 +78,flu_00079,2010-10-15 to 2011-05-09,H5N1 subtype,Qena Governorate (admin level 1); Gharbia Governorate (admin level 1); Aswan Governorate (admin level 1); Alexandria Governorate (admin level 1); Beni Suef Governorate (admin level 1); Luxor Governorate (admin level 1); Giza Governorate (admin level 1),Egypt,Gallus gallus; Homo sapiens; Galliformes,2010_12_09_5; 2011_04_12_4; 2011_01_14_7; 2010_10_15_2; 2011_06_07_5; 2011_02_08_4; 2011_03_07_3; 2011_01_24_6,0,2010_07_30_3; 2010_08_16_2; 2010_08_18_2; 2010_08_20_3; 2010_08_26_4; 2011_06_20_6 +198,flu_00199,2011-09-17 to 2011-09-17,H5N1 subtype,"Mahalapye (admin level 2), Central District (admin level 1)",Botswana,Homo sapiens,2011_11_17_8,1, +181,flu_00182,2008-04-30 to 2008-04-30,H5N1 subtype,"Shpola Raion (admin level 2), Cherkasy Oblast (admin level 1)",Ukraine,Aves; Gallus gallus; Homo sapiens,2008_04_30_4,1, +257,flu_00258,2014-12-06 to 2014-12-06,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Homo sapiens; Galliformes,2014_02_07_4,1, +306,flu_00307,2011-04-14 to 2011-04-14,H5N1 subtype,Sükhbaatar Province (admin level 1),Mongolia,Aves; Cygnus cygnus,2011_04_28_1,1, +48,flu_00049,2007-07-05 to 2007-09-04,H5N1 subtype,"Bavaria (admin level 1); Lower Saxony (admin level 1); Thuringia (admin level 1); Kreis Jena-Land (admin level 2), Gera District (admin level 1)",Germany,Aves; Anas; Galliformes,2007_07_17_3; 2007_07_05_2; 2007_09_04_2,1, +282,flu_00283,2015-05-22 to 2015-07-08,H5N1 subtype,Istanbul Province (admin level 1),Turkey,Aves; Metazoa; Galliformes,2015_07_08_1; 2015_05_22_4,1, +87,flu_00088,2010-01-04 to 2010-02-03,H5N1 subtype,"Gazipur District (admin level 2), Dhaka Division (admin level 1); Sirajganj (distrito sa Bangladesh) (admin level 2), Rajshahi Division (admin level 1); Rajshahi Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Anas; Homo sapiens; Galliformes,2010_02_03_1; 2010_02_03_4; 2010_01_27_3,1, +201,flu_00202,2013-10-22 to 2013-11-15,H5N1 subtype,"Battambang Province (admin level 1); Romdoul District (admin level 2), Svay Rieng Province (admin level 1); Kampong Speu Province (admin level 1); Pailin Province (admin level 1); Pursat Province (admin level 1); Baray (distrito) (admin level 2), Kampong Thom Province (admin level 1)",Cambodia,Gallus gallus; Homo sapiens; Galliformes,2013_10_28_5; 2013_11_08_3; 2013_11_15_2; 2013_11_01_2,0,2013_07_18_2; 2013_08_19_2; 2013_08_23_3; 2013_09_23_2 +329,flu_00330,2007-09-28 to 2007-09-28,H5N1 subtype,"Taphan Hin (admin level 2), Phichit (admin level 1)",Thailand,Gallus gallus; Galliformes,2007_09_28_4,1, +328,flu_00329,2017-05-12 to 2017-05-12,H5N8 subtype,Friuli–Venezia Giulia (admin level 1),Italy,Aves,2017_05_12_3,1, +246,flu_00247,2008-08-27 to 2008-09-18,H5N1 subtype,Luang Prabang Province (admin level 1),Laos,Aves; Anas; Homo sapiens; Galliformes,2008_09_11_2; 2008_09_18_2,1, +36,flu_00037,2017-05-30 to 2017-06-13,H5N8 subtype,"Gyeonggi Province (admin level 1); Gunsan (admin level 2), North Jeolla Province (admin level 1); Jeju (admin level 1); North Jeolla Province (admin level 1)",South Korea,Aves; Corvus macrorhynchos; Gallus gallus; Anas; Galliformes,2017_06_13_3; 2017_05_30_8; 2017_06_06_6,1, +242,flu_00243,2012-11-15 to 2012-11-15,H5N1 subtype,New South Wales (admin level 1),Australia,Aves; Gallus gallus; Homo sapiens,2012_11_15_3,1, +94,flu_00095,2013-11-04 to 2014-03-07,H5N1 subtype,"Dong Thap Province (admin level 1); Bac Ninh (admin level 1); Tan Phu (admin level 2), Ho Chi Minh City (admin level 1)",Vietnam,Aves; Anas; Homo sapiens; Galliformes,2014_02_07_5; 2013_11_08_1; 2014_02_19_5; 2014_01_09_5; 2014_03_07_5; 2014_01_22_2,0,2013_10_28_6 +,,,,,,,,51, \ No newline at end of file diff --git a/data/entity_resolver_output/selected-tuples-2018-11-05.csv b/data/entity_resolver_output/selected-tuples-2018-11-05.csv new file mode 100644 index 0000000..6544f05 --- /dev/null +++ b/data/entity_resolver_output/selected-tuples-2018-11-05.csv @@ -0,0 +1,68 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host,false negative, +1650,2017_02_07_7,2017-01-31,H5N1 subtype,Cambodia (country),Cambodia,Gallus gallus,0, +1827,2014_12_09_2,2014-12-09,H5N8 subtype,Netherlands (country),Netherlands,Galliformes; Anas; Aves,0, +2507,2016_07_12_2,2016-07-04,H5N2 subtype,Canada (country),Canada,Aves,0, +896,2007_09_14_1,2007-09-09,H5N1 subtype,North Dakota (admin level 1),United States of America,Anas,0, +1690,2011_07_11_1,2011-06-22,H5N1 subtype,Bangladesh (country),Bangladesh,Galliformes; Aves,0, +449,2011_11_17_7,2011-11-17,H5N2 subtype,Western Cape (admin level 1),South Africa,Galliformes; Aves,0, +625,2007_07_05_2,2007-07-05,H5N1 subtype,Thuringia (admin level 1),Germany,Aves,0, +2393,2015_08_24_6,2015-08-24,H5N1 subtype,State of Palestine (country),State of Palestine,Aves,0, +1009,2017_06_27_5,2017-06-23,H5N2 subtype,Taiwan (country),Taiwan,Aves,0, +1186,2011_09_23_1,2011-09-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves; Galliformes,0, +1248,2017_03_22_1,2017-03-06,H5N8 subtype,Austria (country),Austria,Pelecanidae; Aves,0, +1476,2014_01_09_3,2013-12-24,H7N7 subtype,South Africa (country),South Africa,Aves; Galliformes,0, +2248,2008_07_18_3,2008-07-10,H5N1 subtype,Indonesia (country),Indonesia,Galliformes; Homo sapiens,1,flu_00077 +1623,2017_08_25_3,2017-08-22,H5N8 subtype,South Africa (country),South Africa,Aves; Gallus gallus,0, +1997,2016_07_29_1,2016-07-29,H5N8 subtype,United States of America (country),United States of America,Aves; Galliformes; Anas,0, +505,2017_02_01_6,2017-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Aves,0, +1981,2016_12_06_2,2016-11-12,H5N8 subtype,Finland (country),Finland,Aves; Galliformes,0, +1611,2016_02_08_4,2016-02-08,H7N3 subtype,South Africa (country),South Africa,Aves; Anas,0, +987,2009_02_23_2,2009-02-23,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Aves,1,"flu_00009, flu_00101" +2523,2015_08_24_7,2015-08-24,H5N1 subtype,Vietnam (country),Vietnam,Aves,0, +1602,2009_03_10_3,2009-03-04,H7N6 subtype,Aichi Prefecture (admin level 1),Japan,Galliformes; Aves,0, +25,2011_12_06_6,2011-11-10,H5N1 subtype,Dakahlia Governorate (admin level 1),Egypt,Homo sapiens; Galliformes; Aves,0, +176,2012_06_28_1,2012-06-20,H5N1 subtype,People's Republic of China (country),People's Republic of China,Aves; Galliformes,1,flu_00032 +400,2011_05_25_1,2011-05-25,H5N1 subtype,Bangladesh (country),Bangladesh,Aves,0, +159,2010_01_27_2,2010-01-12,H1N1 subtype,Japan (country),Japan,Sus scrofa,0, +75,2014_01_31_5,2014-01-31,Influenza A virus,Jiangxi (admin level 1),People's Republic of China,Homo sapiens,0, +1930,2014_09_30_1,2014-09-30,Influenza A virus,Berks County (admin level 2); Pennsylvania (admin level 1),United States of America,Aves; Homo sapiens,0, +277,2015_08_07_8,2015-08-07,H5N6 subtype,Vietnam (country),Vietnam,Aves,1,flu_00219 +51,2010_12_09_6,2010-12-09,H5N1 subtype,kabupaten de Bandung occidental (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens,1,flu_00104 +1886,2011_03_29_6,2011-03-16,H5N1 subtype,Myanmar (country),Myanmar,Galliformes,0, +2435,2015_04_03_3,2015-04-02,H5N1 subtype,United States of America (country),United States of America,Aves; Galliformes,0, +1961,2017_05_12_7,2017-03-30,Influenza A virus,South Korea (country),South Korea,Aves; Gallus gallus,0, +1649,2012_09_07_1,2012-06-05,H5N1 subtype,Hong Kong (admin level 1),People's Republic of China,Galliformes; Gallus gallus,1,flu_00032 +1147,2014_12_19_2,2014-12-14,Influenza A virus,South Korea (country),South Korea,Gallus gallus,0, +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves,0, +1817,2010_02_03_1,2010-02-03,H5N1 subtype,Bangladesh (country),Bangladesh,Aves,0, +1369,2016_12_06_17,2016-11-25,H5N2 subtype,South Africa (country),South Africa,Aves,0, +2518,2016_01_15_1,2016-01-08,Influenza A virus,Taiwan (country),Taiwan,Passeridae,0, +2386,2016_01_15_2,2016-01-15,H5N2 subtype,Haute-Garonne (admin level 2); Languedoc-Roussillon-Midi-Pyrénées (admin level 1),France,Galliformes; Anas; Gallus gallus,0, +124,2017_01_10_16,2017-12-21,H5N8 subtype,Gorzów County (admin level 2); Lubusz Voivodeship (admin level 1),Poland,Anas; Gallus gallus; Aves,0, +1140,2015_05_29_3,2015-05-29,H5N1 subtype,India (country),India,Aves; Homo sapiens,1,flu_00153 +1991,2008_01_04_4,2008-01-04,H5N1 subtype,Dangbo (admin level 2); Ouémé Department (admin level 1),Benin,Gallus gallus; Anas,0, +1385,2010_12_09_2,2010-12-09,H5N1 subtype,Azerbaijan (country),Azerbaijan,Aves,0, +11,2013_07_18_1,2013-07-18,H5N1 subtype,Karnataka (admin level 1),India,Aves,0, +1603,2009_03_10_3,2009-03-04,H7N6 subtype,Japan (country),Japan,Aves; Gallus gallus,0, +174,2009_11_20_3,2009-10-19,H1N1 subtype,Norway (country),Norway,Sus scrofa,0, +1648,2012_09_07_1,2012-06-05,H5N1 subtype,Guangzhou (kapital sa lalawigan) (admin level 2); Guangdong (admin level 1),People's Republic of China,Galliformes,1,flu_00032 +1165,2009_03_17_1,2009-03-15,H5N1 subtype,Neubrandenburg District (admin level 1),Germany,Aves; Anser; Anas,0, +2407,2017_01_10_19,2017-01-05,H5N8 subtype,Taiwan (country),Taiwan,Gallus gallus,0, +560,2008_04_30_5,2008-04-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes,0, +563,2009_07_10_1,2009-07-10,H1N1 subtype,Canada (country),Canada,Sus scrofa,0, +1118,2016_01_22_5,2016-01-22,H5N2 subtype,Kaohsiung City (admin level 1),Taiwan,Galliformes; Aves,0, +1318,2009_12_14_1,2009-12-03,H1N1 subtype,Kabupaten Karawang (admin level 2); West Java Province (admin level 1),Indonesia,Homo sapiens,0, +2065,2010_12_03_6,2010-11-10,H5N2 subtype,Germany (country),Germany,Aves; Homo sapiens,0, +710,2012_08_30_1,2012-08-30,H5N1 subtype,North 24 Parganas district (admin level 2); West Bengal (admin level 1),India,Gallus gallus; Galliformes,0, +1036,2013_06_28_1,2013-06-28,H7N7 subtype,Germany (country),Germany,Aves,0, +2387,2016_01_15_2,2016-01-15,H5N2 subtype,France (country),France,Anas; Gallus gallus,0, +665,2015_12_04_4,2015-12-04,H5N1 subtype,Vietnam (country),Vietnam,Aves,0, +23,2017_02_07_11,2017-02-07,H5N8 subtype,Struga Municipality (admin level 1),Macedonia,Galliformes; Aves,0, +164,2012_02_02_5,2012-01-03,H5N1 subtype,Gharbia Governorate (admin level 1),Egypt,Anas; Gallus gallus; Galliformes,0, +1990,2008_01_04_4,2008-01-04,H5N1 subtype,Benin (country),Benin,Galliformes; Gallus gallus; Anas; Phasianidae,0, +218,2009_11_06_1,2009-10-26,H5N1 subtype,Tuva Republic (admin level 1),Russia,Podicipedidae; Aves,0, +1776,2013_02_22_2,2013-02-22,H5N1 subtype,Neubrandenburg District (admin level 1),Germany,Galliformes; Gallus gallus,0, +99,2012_12_21_3,2012-12-03,H5N1 subtype,Damietta Governorate (admin level 1),Egypt,Homo sapiens; Galliformes,0, +1012,2016_12_01_1,2016-11-12,H5N8 subtype,Croatia (country),Croatia,Galliformes; Gallus gallus,0, +2477,2017_05_12_3,2017-05-12,H5N8 subtype,Italy (country),Italy,Aves,0, +,,,,,,,8, \ No newline at end of file diff --git a/data/entity_resolver_output/selected-tuples-2018-11-07.csv b/data/entity_resolver_output/selected-tuples-2018-11-07.csv new file mode 100644 index 0000000..a509b00 --- /dev/null +++ b/data/entity_resolver_output/selected-tuples-2018-11-07.csv @@ -0,0 +1,67 @@ +index,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports,true positive,missing reports +199,flu_00200,2016-10-22 to 2016-11-4,H5N8 subtype,"Delhi (admin level 1); Alappuzha (admin level 2), Kerala (admin level 1); Punjab (admin level 1); Madhya Pradesh (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1)",India,Gallus gallus; Galliformes; Ciconiidae; Anas; Aves,2016_11_15_12; 2016_11_07_3,1, +117,flu_00118,2013-04-24 to 2013-04-24,H7N9 subtype,Taiwan (country),Taiwan,Galliformes; Homo sapiens,2013_04_30_5,1, +151,flu_00152,2016-02-01 to 2016-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Corvus,2016_02_22_1,1, +215,flu_00216,2014-01-16 to 2014-03-20,H5N8 subtype,"South Chungcheong Province (admin level 1); North Jeolla Province (admin level 1); Gyeonggi Province (admin level 1); Busan (admin level 1); Seoul (admin level 1); Gochang (admin level 2), North Jeolla Province (admin level 1); Gwacheon (admin level 2), Gyeonggi Province (admin level 1)",South Korea,Gallus gallus; Galliformes; Anser fabalis; Aves; Homo sapiens; Anas,2014_01_22_1; 2014_03_20_1; 2014_09_30_4; 2014_01_31_1; 2014_03_20_6,0,2014_02_19_6 +328,flu_00329,2017-02-28 to 2017-02-28,H5N8 subtype,United States of America (country),United States of America,Phasianidae; Anas,2017_03_08_5,1, +17,flu_00018,2016-11-28 to 2017-1-24,H5N8 subtype,Niigata Prefecture (admin level 1); Aomori Prefecture (admin level 1),Japan,Homo sapiens; Gallus gallus; Anas; Aves,2017_02_01_10; 2016_12_06_13; 2016_12_13_16,1, +102,flu_00103,2014-12-13 to 2014-12-13,H5N1 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1)",Vietnam,Aves,2014_12_23_4,1, +263,flu_00264,2011-12-24 to 2011-12-24,H5N1 subtype,"distretto di Meherpur (admin level 2), Khulna Division (admin level 1)",Bangladesh,Gallus gallus; Aves,2012_01_06_3,0,2011_09_15_2; 2011_09_15_6; 2011_12_22_2; 2011_11_17_5; 2012_02_02_2; 2012_03_06_6 +161,flu_00162,2011-09-15 to 2011-12-06,H5N1 subtype,"Bali (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1); Denpasar (admin level 2), Bali (admin level 1); Central Java Province (admin level 1); North Lombok Regency (admin level 2), West Nusa Tenggara (admin level 1); Special Region of Yogyakarta (admin level 1); Mataram (admin level 2), West Nusa Tenggara (admin level 1); Kabupatèn Lombok Wétan (admin level 2), West Nusa Tenggara (admin level 1); South Sulawesi (admin level 1)",Indonesia,Gallus gallus; Galliformes; Homo sapiens; Aves,2011_10_24_2; 2011_09_15_4; 2011_11_17_9; 2011_10_31_1; 2011_10_07_1; 2011_10_24_1; 2011_10_18_1; 2011_10_18_3; 2011_12_06_3; 2011_09_21_4,0,2012_02_02_8; 2012_02_22_6; 2012_02_29_6; 2012_03_12_5; 2012_04_09_4; 2012_04_12_6; 2012_04_16_1 +5,flu_00006,2007-03-20 to 2007-03-23,H5N1 subtype,Kabul Province (admin level 1); Nangarhar (admin level 1); Kunar (admin level 1),Afghanistan,Galliformes; Aves,2007_04_02_2; 2007_03_20_3,1, +189,flu_00190,2007-11-14 to 2007-11-14,H5N1 subtype,Riyadh Region (admin level 1),Saudi Arabia,Galliformes; Gallus gallus; Aves,2007_11_23_2,1, +40,flu_00041,2007-09-04 to 2007-09-04,H5N1 subtype,Bavaria (admin level 1),Germany,Galliformes; Anas; Aves,2007_09_04_2,1, +58,flu_00059,2010-12-01 to 2011-03-15,H5N1 subtype,Hong Kong (admin level 1); Qinghai (admin level 1),People's Republic of China,Gallus gallus; Copsychus saularis; Galliformes; Anser; Aves,2011_01_28_2; 2010_12_03_1; 2011_03_15_2; 2011_01_24_1; 2011_02_11_5,0,2010_11_18_3 +105,flu_00106,2016-01-16 to 2016-01-19,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Galliformes; Homo sapiens,2016_01_22_10; 2016_01_22_11,1, +324,flu_00325,2007-04-16 to 2007-04-16,H5N1 subtype,Japan (country),Japan,Aves,2007_04_16_1,1, +152,flu_00153,2015-01-30 to 2015-04-17,H5N1 subtype,"Amethi district (admin level 2), Uttar Pradesh (admin level 1); Kollam (admin level 2), Kerala (admin level 1); Sultanpur district (admin level 2), Uttar Pradesh (admin level 1)",India,Gallus gallus; Corvus splendens; Columbidae; Anas; Aves,2015_01_30_2; 2015_03_20_4; 2015_03_27_2; 2015_04_17_4,0,2014_12_19_5; 2015_05_29_3 +158,flu_00159,2009-08-29 to 2009-08-29,H5N1 subtype,"distretto de Chittagong (admin level 2), Chattogram Division (admin level 1)",Bangladesh,Galliformes,2009_09_25_2,1, +223,flu_00224,2016-11-04 to 2016-12-12,H5N8 subtype,"Stansstad (admin level 2), Nidwalden (admin level 1); Canton of Neuchâtel (admin level 1); Oberhofen bei Kreuzlingen (admin level 2), Thurgau (admin level 1); Belmont-sur-Lausanne (admin level 2), Lavaux-Oron District (admin level 1)",Switzerland,Anas platyrhynchos; Chroicocephalus ridibundus; Galliformes; Cepora; Aves; Laridae; Anas,2016_11_15_8; 2016_12_13_10; 2016_11_18_6,1, +20,flu_00021,2012-09-12 to 2012-09-20,H7N3 subtype,Jalisco (admin level 1),Mexico,Galliformes; Homo sapiens; Aves,2012_09_14_1; 2012_09_20_3,1, +24,flu_00025,2017-05-30 to 2017-06-13,H5N8 subtype,"Gunsan (admin level 2), North Jeolla Province (admin level 1); North Jeolla Province (admin level 1); Jeju (admin level 1); Gyeonggi Province (admin level 1)",South Korea,Galliformes; Gallus gallus; Corvus macrorhynchos; Anas; Aves,2017_06_13_3; 2017_05_30_8; 2017_06_06_6,1, +51,flu_00052,2009-03-02 to 2009-07-25,H5N1 subtype,"Hau Giang (admin level 1); Ca Mau (admin level 1); Long Xuyen (admin level 2), An Giang (admin level 1); Bac Lieu (admin level 1); Dien Bien Phu (admin level 2), Điện Biên (admin level 1); Dong Thap Province (admin level 1); Ha Tinh (admin level 1); Vinh Long (admin level 2), Vĩnh Long (admin level 1); Hoang Mai (admin level 2), Hanoi (admin level 1)",Vietnam,Homo sapiens; Galliformes; Gallus gallus; Anas; Aves,2009_05_22_2; 2009_03_23_5; 2009_03_02_8; 2009_06_29_3; 2009_08_03_5,0,2009_01_14_10; 2009_02_06_10; 2009_02_06_5; 2009_02_13_6; 2009_03_30_6; 2009_05_01_5; 2009_05_05_3; 2009_05_15_2 +36,flu_00037,2016-01-02 to 2016-01-22,H5N1 subtype,Nigeria (country),Nigeria,Aves,2016_01_22_4; 2016_01_08_3; 2016_01_15_3,0,2015_07_10_2; 2015_07_20_3; 2015_07_31_4; 2015_08_07_5; 2015_08_24_5; 2015_08_28_2; 2015_09_18_3; 2015_09_30_2; 2015_10_05_3; 2015_11_20_3; 2016_01_29_3; 2016_02_22_4; 2016_03_14_5; 2016_04_11_3 +0,flu_00001,2011-12-06 to 2012-03-21,H5N1 subtype,"Orissa (admin level 1); Mayurbhanj district (admin level 2), Odisha (admin level 1); Punjab (admin level 1); Kolkata destrict (admin level 2), West Bengal (admin level 1); Visakhapatnam district (admin level 2), Andhra Pradesh (admin level 1); Khordha district (admin level 2), Odisha (admin level 1); Lalitpur district (admin level 2), Uttar Pradesh (admin level 1); Khurdan piirikunta (admin level 2), Odisha (admin level 1); Bhopal district (admin level 2), Madhya Pradesh (admin level 1); distretto di Siwan (admin level 2), Bihar (admin level 1); Jharkhand (admin level 1)",India,Gallus gallus; Corvus macrorhynchos; Corvus; Galliformes; Aves; Anas,2012_02_02_4; 2012_02_22_3; 2012_02_02_13; 2011_12_06_1; 2012_02_02_3; 2012_03_23_2; 2012_04_09_2; 2012_02_02_10; 2012_02_02_1; 2012_02_22_1,0,2012_03_23_7 +120,flu_00121,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Sus scrofa; Aves,2006_12_01_1,1, +30,flu_00031,2014-09-25 to 2014-10-25,H5N1 subtype,"Reggenza di Bone Bolango (admin level 2), Gorontalo Province (admin level 1); Gorontalo Province (admin level 1)",Indonesia,Gallus gallus,2014_11_03_9,1, +62,flu_00063,2009-08-05 to 2009-09-08,H5N1 subtype,"Meeker County (admin level 2), Minnesota (admin level 1)",United States of America,Galliformes; Homo sapiens; Anas; Aves,2009_08_07_2; 2009_09_08_1; 2009_09_01_1,1, +69,flu_00070,2009-09-14 to 2009-09-14,H1N1 subtype,"West Kansas (admin level 1); Riley County (admin level 2), Kansas (admin level 1)",United States of America,Homo sapiens,2009_09_14_3,0,2009_11_06_7; 2009_11_20_4; 2010_01_12_13 +307,flu_00308,2017-01-05 to 2017-01-18,Influenza A virus,Chile (country),Chile,Phasianidae; Aves,2017_01_10_9; 2017_01_23_7,1, +127,flu_00128,2007-12-14 to 2007-12-25,H5N1 subtype,"Berlin (admin level 1); Lower Saxony (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1); Neubrandenburg District (admin level 1)",Germany,Galliformes; Gallus gallus; Aves,2007_12_21_3; 2008_01_25_3; 2008_01_04_5; 2008_10_09_4,1, +208,flu_00209,2008-10-15 to 2008-10-15,H5N1 subtype,"Lower Saxony (admin level 1); Goerlitz District (admin level 2), Dresden District (admin level 1)",Germany,Galliformes; Aves,2008_10_16_2,1, +317,flu_00318,2012-03-19 to 2012-03-25,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Phasianidae; Galliformes; Homo sapiens,2012_04_12_5,1, +302,flu_00303,2008-02-01 to 2008-03-14,H5N1 subtype,"West Bengal (admin level 1); Distrito de Bhopal (admin level 2), Madhya Pradesh (admin level 1); Malda (admin level 2), West Bengal (admin level 1)",India,Gallus gallus; Galliformes; Anas; Aves,2008_03_14_4; 2008_02_01_3,0,2008_01_04_3; 2008_02_08_5; 2008_03_03_4 +107,flu_00108,2012-03-17 to 2012-03-19,H5N2 subtype,Waterschap Limburg (admin level 1),Netherlands,Galliformes; Aves,2012_03_23_4,1, +216,flu_00217,2012-12-30 to 2012-12-30,H5N1 subtype,India (country),India,Galliformes; Aves,2012_02_02_3,0,Incorrect data assigned to tuple +178,flu_00179,2007-02-16 to 2007-02-16,H5N1 subtype,Orenburg Oblast (admin level 1),Russia,Aves,2007_02_16_4,1, +145,flu_00146,2015-06-10 to 2015-06-10,Influenza A virus,"Gangjin (admin level 2), South Jeolla Province (admin level 1); Seoul (admin level 1)",South Korea,Galliformes; Anas; Aves,2015_09_18_1,1, +270,flu_00271,2013-03-01 to 2013-03-18,H5N1 subtype,"Purnia (admin level 2), Bihar (admin level 1); Khordha (admin level 2), Odisha (admin level 1); Odisha (admin level 1); Lakhimpurin piirikunta (admin level 2), Assam (admin level 1); Ganjam (admin level 2), Odisha (admin level 1); distretto di Madhepura (admin level 2), Bihar (admin level 1)",India,Gallus gallus; Galliformes; Aves,2013_03_18_2; 2013_03_01_1,1, +110,flu_00111,2010-11-02 to 2010-11-02,H5N1 subtype,Connecticut (admin level 1),United States of America,Homo sapiens,2010_11_05_2,1, +327,flu_00328,2009-03-02 to 2009-03-02,H5N1 subtype,Phongsaly Province (admin level 1),Laos,Galliformes; Homo sapiens,2009_03_02_6,1, +236,flu_00237,2006-12-07 to 2007-03-08,H5N1 subtype,Heilongjiang (admin level 1); Hong Kong (admin level 1),People's Republic of China,Lonchura punctulata; Aves,2007_01_08_2; 2006_12_07_1; 2007_03_08_1,0,2006_11_14_1; 2007_01_18_1; 2007_01_22_1; 2007_02_07_1; 2007_02_16_1; 2007_03_20_1; 2007_04_06_1; 2007_05_30_2; 2007_06_12_1; 2007_06_01_1; 2007_06_15_1; 2007_06_22_1 +264,flu_00265,2014-10-01 to 2014-10-01,H5N1 subtype,Giza Governorate (admin level 1),Egypt,Homo sapiens; Aves,2014_10_06_2,0,2014_11_25_4; 2014_12_09_6; 2014_12_23_6; 2014_12_19_6; 2014_12_16_5; 2015_03_13_5; 2014_12_29_8; 2015_01_23_12; 2015_01_30_8; 2015_02_13_6; 2015_03_02_13; 2015_03_06_7 +87,flu_00088,2013-03-25 to 2013-06-27,H7N9 subtype,"Guangdong (admin level 1); Hangzhou (kapital sa lalawigan sa Republikang Popular sa Tsina) (admin level 2), Zhejiang (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Anhui (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Jiangsu (admin level 1); Hebei (admin level 1); Jiangxi (admin level 1)",People's Republic of China,Gallus gallus; Columbidae; Anas; Galliformes; Aves; Homo sapiens; Anser,2015_03_02_10; 2013_05_13_1; 2013_04_30_3; 2013_05_24_1; 2013_05_03_3; 2013_05_13_3; 2013_04_12_5; 2013_08_23_2; 2013_05_30_5; 2013_05_30_1; 2013_04_12_1; 2013_04_08_1; 2013_06_28_2,0,2013_08_19_3; 2014_12_09_5; 2013_04_19_4; 2013_06_07_1 +156,flu_00157,2006-11-14 to 2007-03-20,H5N1 subtype,"New London County, Connecticut (admin level 2), Connecticut (admin level 1); Hong Kong (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Lonchura punctulata; Corvus splendens; Lanius schach; Galliformes; Aves; Psittacidae; Pionus menstruus; Falco peregrinus; Homo sapiens; Anas,2007_01_18_1; 2007_02_07_1; 2007_01_22_1; 2007_03_20_1; 2007_02_16_1; 2006_11_14_1,0,overlaps with flu_00237 +169,flu_00170,2014-08-12 to 2014-09-30,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); District de Thanh Xuan (admin level 2), Hanoi (admin level 1); Lao Cai (admin level 1); Ha Tinh (admin level 1)",Vietnam,Gallus gallus; Galliformes; Anas; Homo sapiens; Aves,2014_08_29_1; 2014_09_10_1; 2014_08_15_1; 2014_09_30_3,1, +247,flu_00248,2014-06-17 to 2014-06-17,H7N9 subtype,Jiangsu (admin level 1); Shandong (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2014_06_17_2,0,2013_12_06_3; 2013_12_13_2; 2014_01_09_7; 2014_01_09_10; 2014_01_22_6; 2014_01_31_2; 2014_01_31_6; 2014_02_07_3; 2014_01_31_3; 2014_02_19_1; 2014_02_19_12; 2014_03_07_7; 2014_03_07_6; 2014_03_07_13; 2014_03_07_2; 2014_04_10_9; 2014_04_10_4; 2014_05_30_1; 2014_05_16_1; 2014_05_16_2; 2014_05_23_1; 2014_05_30_1; 2014_06_06_1; 2014_06_23_3; 2014_07_21_1; 2014_11_03_10; 2014_10_24_5; 2014_11_03_10; 2014_11_12_2; 2014_12_09_5; 2014_12_29_9; 2014_12_16_3; 2014_12_23_5; 2015_01_08_6; 2015_01_08_11; 2015_02_13_5; 2015_01_30_6; 2015_03_02_11; 2015_03_06_6; 2015_05_01_8; 2015_05_29_7; 2015_06_12_5 +187,flu_00188,2015-01-30 to 2015-06-12,H7N9 subtype,"Guangdong (admin level 1); Hubei (admin level 1); Anhui (admin level 1); Zhejiang (admin level 1); Shanghai (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Heyuan (admin level 2), Guangdong (admin level 1); Jiangxi (admin level 1)",People's Republic of China,Gallus gallus; Galliformes; Homo sapiens; Aves,2015_03_06_6; 2015_05_01_8; 2015_01_30_6; 2015_05_29_7; 2015_06_12_5,0,overlaps with flu_00248 +136,flu_00137,2007-07-03 to 2007-07-17,H5N1 subtype,"East Siberian Oblast (admin level 2), Russian Soviet Federative Socialist Republic (admin level 1); Buryatia (admin level 1); Tomsk Oblast (admin level 1)",Russia,Galliformes; Aves,2007_07_20_2; 2007_07_05_3,1, +249,flu_00250,2011-01-04 to 2011-01-04,H5N1 subtype,Kagoshima Prefecture (admin level 1),Japan,Aves,2011_01_14_1,0,2011_01_24_2; 2011_01_28_3; 2011_01_28_5; 2011_02_08_3; 2011_02_11_7; 2011_02_11_1; 2011_02_28_1; 2011_02_08_1; 2011_02_22_6; 2011_02_22_2; 2011_03_07_1; 2011_03_15_5; 2011_03_22_1; 2011_03_22_4 +70,flu_00071,2007-06-12 to 2007-06-12,H5N1 subtype,Kuala Lumpur (admin level 1); Selangor (admin level 1),Malaysia,Gallus gallus; Galliformes,2007_06_12_3,1, +204,flu_00205,2011-12-13 to 2011-12-16,H5N1 subtype,"Hong Kong (admin level 1); Katchiungo (admin level 2), Huambo Province (admin level 1)",Angola,Chroicocephalus ridibundus; Aves,2011_12_22_1,1, +280,flu_00281,2015-04-02 to 2015-04-02,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Galliformes; Homo sapiens; Aves,2015_04_03_7,1, +135,flu_00136,2009-07-24 to 2009-07-24,H1N1 subtype,Australia (country),Australia,Galliformes; Sus scrofa,2009_08_03_3,1, +231,flu_00232,2011-05-31 to 2011-07-11,H5N1 subtype,Jambi Province (admin level 1); South Sulawesi (admin level 1),Indonesia,Galliformes; Gallus gallus; Homo sapiens,2011_05_31_1; 2011_06_10_3; 2011_07_11_2; 2011_06_20_1,1, +326,flu_00327,2013-04-19 to 2013-04-26,H5N1 subtype,Cairo Governorate (admin level 1),Egypt,Gallus gallus; Galliformes; Homo sapiens; Anas,2013_04_19_3; 2014_02_19_9,1, +281,flu_00282,2017-11-22 to 2017-11-22,H7N9 subtype,Fujian (admin level 1); Jiangsu (admin level 1); Zhejiang (admin level 1),People's Republic of China,Galliformes; Homo sapiens,2017_01_10_21,1, +253,flu_00254,2010-02-24 to 2010-04-01,H5N1 subtype,Gharbia Governorate (admin level 1); Damietta Governorate (admin level 1); Qalyubia Governorate (admin level 1),Egypt,Homo sapiens; Galliformes; Anas,2010_03_26_3; 2010_03_09_5; 2010_04_02_4; 2010_05_28_1,1, +251,flu_00252,2016-04-20 to 2016-06-20,H5N2 subtype,Taipei (admin level 1); Taichung (admin level 1),Taiwan,Galliformes; Gallus gallus,2016_06_24_5; 2016_04_20_3; 2016_05_20_6,1, +168,flu_00169,2015-08-18 to 2015-08-18,H5N2 subtype,Mexico (country),Mexico,Galliformes; Aves,2015_08_18_2,1, +323,flu_00324,2006-12-10 to 2006-12-10,H5N1 subtype,Anhui Province (admin level 1),China,Galliformes; Gallus gallus; Homo sapiens,2007_01_18_4,0,overlaps with flu_00237 +138,flu_00139,2007-11-04 to 2007-11-04,H5N1 subtype,Fukui Prefecture (admin level 1),Japan,Galliformes; Aves,2007_02_16_3,1, +141,flu_00142,2011-06-29 to 2011-08-01,H5N1 subtype,"Minnesota (admin level 1); Wright County (admin level 2), Iowa (admin level 1)",United States of America,Galliformes; Homo sapiens; Aves,2011_07_06_4; 2011_08_11_3,1, +268,flu_00269,2017-01-03 to 2017-02-07,H5N8 subtype,Wales (admin level 1),United Kingdom,Anas platyrhynchos; Gallus gallus; Galliformes; Anas; Aves,2017_02_07_14; 2017_01_10_20,1, +174,flu_00175,2006-12-26 to 2006-12-26,H5N1 subtype,"Mueang Suphan Buri (admin level 2), Suphanburi (admin level 1); Phitsanulok (admin level 1)",Thailand,Columbidae; Anas; Aves,2007_01_22_2,0,2007_02_07_4; 2010_11_05_1; 2007_04_06_2 +171,flu_00172,2007-06-21 to 2007-07-17,H5N1 subtype,South Bohemia Region (admin level 1); South Moravian Region (admin level 1); Central Bohemian Region (admin level 1),Czech Republic,Phasianidae; Galliformes; Aves,2007_06_22_4; 2007_07_17_2; 2007_07_03_2,1, +54,flu_00055,2016-01-06 to 2016-03-17,H7N9 subtype,"Guangdong (admin level 1); Hunan (admin level 1); Hubei (admin level 1); Zhaoqing (admin level 2), Guangdong (admin level 1); Shantou (admin level 2), Guangdong (admin level 1); Yongzhou (admin level 2), Hunan (admin level 1); Chaozhou (admin level 2), Guangdong (admin level 1); Zhejiang (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Jiangsu (admin level 1); Fujian (admin level 1); Jieyang (admin level 2), Guangdong (admin level 1); Shaoxing (admin level 2), Zhejiang (admin level 1); Longyan (admin level 2), Fujian (admin level 1)",People's Republic of China,Galliformes; Homo sapiens,2016_01_15_7; 2016_02_08_7; 2016_05_06_7; 2016_02_29_5; 2016_02_22_7; 2016_03_14_9; 2016_03_21_8; 2016_01_08_7; 2016_01_29_4; 2016_02_16_3,0,2015_10_16_5; 2015_11_13_4; 2016_07_26_2; 2015_11_25_6; 2016_04_26_10; 2016_04_26_11; 2016_05_20_7; 2016_05_27_2; 2016_06_10_2; 2016_06_17_4; 2016_06_07_8; 2016_07_12_5; 2016_09_01_3; 2016_07_29_5 +,,,,,,,,44, \ No newline at end of file diff --git a/data/entity_resolver_output/selected-tuples-2018-11-30.csv b/data/entity_resolver_output/selected-tuples-2018-11-30.csv new file mode 100644 index 0000000..36d8b6f --- /dev/null +++ b/data/entity_resolver_output/selected-tuples-2018-11-30.csv @@ -0,0 +1,61 @@ +index,epidemic_id,date_range,pathogen,locations,country,hosts,source_reports,true_positive,missing_reports +96,flu_00097,2011-09-06 to 2012-02-26,H5N1 subtype,"Manikganj District (admin level 2), Dhaka Division (admin level 1); Khulna Division (admin level 1); Chuadanga District (admin level 2), Khulna Division (admin level 1); Dhaka Division (admin level 1); distretto di Meherpur (admin level 2), Khulna Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Homo sapiens,2012_02_02_2; 2012_03_06_6; 2011_09_15_6; 2011_12_22_2; 2011_11_17_5; 2012_01_06_3; 2011_09_15_2,1, +69,flu_00070,2009-10-26 to 2009-10-26,H5N1 subtype,Tuva Republic (admin level 1); Moscow (admin level 1),Russia,Aves; Podicipedidae; Galliformes,2009_11_06_1,1, +279,flu_00280,2017-01-10 to 2017-01-10,Influenza A virus,Stara Zagora Province (admin level 1),Bulgaria,Aves,2017_01_10_8,1, +243,flu_00244,2016-11-15 to 2016-12-20,H5N6 subtype,Akita Prefecture (admin level 1),Japan,Aves; Cygnus atratus; Homo sapiens,2016_12_01_3; 2016_12_20_3,1, +50,flu_00051,2016-11-07 to 2017-02-01,H5N8 subtype,Brandenburg (admin level 1); Mecklenburg-Vorpommern (admin level 1),Germany,Aves; Galliformes; Anas platyrhynchos; Homo sapiens; Larus marinus; Anas; Gallus gallus; Laridae,2016_12_06_4; 2016_12_06_9; 2016_11_15_4; 2016_11_15_10; 2016_12_13_5; 2017_02_01_3,1, +281,flu_00282,2016-04-20 to 2016-04-20,H7N3 subtype,Puebla (admin level 1); Jalisco (admin level 1); Veracruz (admin level 1),Mexico,Gallus gallus; Pavo cristatus,2016_04_20_1,1, +275,flu_00276,2009-12-11 to 2009-12-11,H9N2 subtype,Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2010_01_12_7,1, +230,flu_00231,2011-11-17 to 2011-11-17,H5N1 subtype,Battambang Province (admin level 1),Cambodia,Gallus gallus; Galliformes; Anser; Anas,2011_11_17_3,1, +68,flu_00069,2010-07-21 to 2011-05-21,H5N1 subtype,Giza Governorate (admin level 1); Qena Governorate (admin level 1); Luxor Governorate (admin level 1); Cairo Governorate (admin level 1); Alexandria Governorate (admin level 1); Aswan Governorate (admin level 1); Qalyubia Governorate (admin level 1); Dakahlia Governorate (admin level 1); Gharbia Governorate (admin level 1); Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Homo sapiens,2010_10_15_2; 2011_04_05_6; 2011_02_08_4; 2010_12_09_5; 2011_01_14_7; 2010_08_18_2; 2010_08_16_2; 2011_01_24_6; 2010_07_30_3; 2011_06_20_6; 2011_03_15_9; 2011_03_07_3; 2010_08_20_3; 2011_06_07_5; 2010_08_26_4; 2011_04_12_4,1, +113,flu_00114,2009-12-11 to 2010-01-20,H5N1 subtype,"Kompung Chinang (admin level 2), Kampong Chhnang Province (admin level 1); Ponhea Kraek District (admin level 2), Kampong Cham Province (admin level 1)",Cambodia,Aves; Homo sapiens,2010_01_20_1; 2009_12_22_3,1, +172,flu_00173,2013-10-28 to 2013-10-28,H7N2 subtype,New South Wales (admin level 1),Australia,Galliformes; Gallus gallus; Anas,2013_10_28_7; 2013_10_28_2,1, +6,flu_00007,2007-09-05 to 2008-03-14,H5N1 subtype,"Turpan (admin level 2), Xinjiang (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Guangdong (admin level 1); Hong Kong (admin level 1); Guizhou (admin level 1); Cheung Prey District (admin level 2), Kampong Cham Province (admin level 1)",People's Republic of China,Aves; Egretta garzetta; Galliformes; Homo sapiens; Gallus gallus; Anas,2008_03_07_1; 2007_11_30_1; 2008_03_14_1; 2008_02_08_1; 2008_02_20_1; 2007_12_18_1; 2008_03_03_3; 2008_01_10_4; 2008_03_27_3; 2007_09_21_2,1, +174,flu_00175,2014-08-12 to 2014-09-30,H5N6 subtype,"Quang Ngai (admin level 2), Quảng Ngãi (admin level 1); District de Thanh Xuan (admin level 2), Hanoi (admin level 1); Ha Tinh (admin level 1); Lang Son (admin level 2), Lạng Sơn (admin level 1); Lao Cai (admin level 1)",Vietnam,Aves; Galliformes; Gallus gallus; Anas; Homo sapiens,2014_09_30_3; 2014_09_10_1; 2014_08_15_1; 2014_08_29_1,1, +236,flu_00237,2016-07-19 to 2016-07-19,H5N8 subtype,Kaohsiung City (admin level 1),Taiwan,Gallus gallus; Anser,2016_07_19_4,1, +39,flu_00040,2015-11-25 to 2016-06-07,H5N6 subtype,"Guangdong (admin level 1); Hong Kong (admin level 1); Xiangxi Tujia eta Miao Prefektura autonomoa (admin level 2), Hunan (admin level 1); Huizhou (admin level 2), Guangdong (admin level 1); Zhuzhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Hunan (admin level 1); Ganzhou (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2016_06_07_7; 2016_01_08_1; 2016_03_21_7; 2016_01_22_1; 2016_03_21_1; 2016_06_10_5; 2015_12_18_1; 2016_03_14_1; 2016_01_15_6; 2016_02_29_2; 2016_01_08_6; 2015_11_25_1; 2016_05_03_4; 2016_06_24_2; 2016_05_06_6; 2016_01_22_9,1, +89,flu_00090,2013-02-01 to 2013-05-23,H5N1 subtype,Tibet (admin level 1); Zhejiang (admin level 1); Hong Kong (admin level 1); Shanghai (admin level 1); Tibet Autonomous Region (admin level 1); Guizhou (admin level 1),People's Republic of China,Aves; Chroicocephalus ridibundus; Anser; Galliformes; Homo sapiens; Gallus gallus,2013_05_23_4; 2013_02_01_1; 2013_02_15_3; 2013_03_01_4; 2013_04_12_3,1, +88,flu_00089,2011-01-01 to 2011-06-22,H5N1 subtype,"Kishoreganj District (admin level 2), Dhaka Division (admin level 1); Gaibandha District (admin level 2), Rangpur Division (admin level 1); Noakhali District (admin level 2), Chattogram Division (admin level 1); Kalamazoo County (admin level 2), Michigan (admin level 1); Bhola District (admin level 2), Barisal Division (admin level 1); Gazipur District (admin level 2), Dhaka Division (admin level 1); Rajshahi Division (admin level 1); Dhaka Division (admin level 1)",Bangladesh,Aves; Gallus gallus; Galliformes; Homo sapiens,2011_02_22_3; 2011_05_25_1; 2011_03_15_1; 2011_03_29_3; 2011_03_22_5; 2011_04_05_7; 2011_07_11_1; 2011_02_08_2; 2011_01_14_3,1, +241,flu_00242,2013-02-22 to 2013-02-22,H5N1 subtype,Brandenburg (admin level 1),Germany,Gallus gallus; Galliformes,2013_02_22_2,1, +67,flu_00068,2009-04-14 to 2009-05-11,H5N1 subtype,"Kentucky (admin level 1); Giles County (admin level 2), Tennessee (admin level 1); Lincoln County (admin level 2), Mississippi (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Homo sapiens,2009_04_14_2; 2009_05_11_3,1, +4,flu_00005,2016-11-18 to 2017-05-31,H7N9 subtype,"Rizhao (admin level 2), Shandong (admin level 1); Jiangsu (admin level 1); Fujian (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); Guangdong (admin level 1); Fuzhou (admin level 2), Fujian (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Henan (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1); Hong Kong (admin level 1); Hubei (admin level 1); Sichuan (admin level 1); Huzhou (admin level 2), Zhejiang (admin level 1); Zhejiang (admin level 1); Suzhou (admin level 2), Jiangsu (admin level 1); Wuhan (admin level 2), Hubei (admin level 1); Tibet (admin level 1); Suzhou (admin level 2), Anhui (admin level 1); Nantong (admin level 2), Jiangsu (admin level 1); Guizhou (admin level 1); Hengyang (admin level 2), Hunan (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Homo sapiens,2016_11_18_9; 2017_05_30_3; 2017_05_12_13; 2016_12_29_13; 2017_01_10_21; 2017_01_23_10; 2017_01_13_7; 2017_06_06_2; 2017_03_03_2; 2017_01_13_8; 2016_12_20_17; 2017_03_03_10; 2017_05_30_10; 2017_01_10_22; 2017_02_07_17; 2016_12_29_14; 2017_03_22_15; 2017_01_23_9,1, +56,flu_00057,2013-09-09 to 2013-09-09,H7N3 subtype,Jalisco (admin level 1),Mexico,Aves; Galliformes,2013_09_09_3,1, +118,flu_00119,2016-01-16 to 2016-01-19,H7N9 subtype,"Chekiang Province, Republic of China (admin level 1)",Taiwan,Galliformes; Homo sapiens,2016_01_22_11; 2016_01_22_10,1, +260,flu_00261,2010-11-16 to 2010-11-22,H5N1 subtype,"Nam Dinh (admin level 2), Nam Định (admin level 1)",Vietnam,Aves; Galliformes; Anas,2010_12_03_4,1, +157,flu_00158,2007-08-14 to 2007-11-01,H5N1 subtype,"West Jakarta (admin level 2), Jakarta (admin level 1); Jakarta (admin level 1); Tangerang Selatan (admin level 2), Banten Province (admin level 1); Bogor Regency (admin level 2), West Java Province (admin level 1); Bekasi Regency (admin level 2), West Java Province (admin level 1)",Indonesia,Galliformes; Gallus gallus; Anas; Homo sapiens,2007_10_05_3; 2007_08_14_2; 2007_11_01_4; 2012_02_02_8,1, +239,flu_00240,2016-04-20 to 2016-06-20,H5N2 subtype,Taipei (admin level 1); Taichung (admin level 1),Taiwan,Gallus gallus; Galliformes,2016_06_24_5; 2016_04_20_3; 2016_05_20_6,1, +224,flu_00225,2014-12-06 to 2014-12-06,Influenza A virus,"Nanchang (admin level 2), Jiangxi (admin level 1)",People's Republic of China,Galliformes; Homo sapiens,2014_02_07_4,1, +192,flu_00193,2011-09-14 to 2011-09-26,H5N1 subtype,Jharkhand (admin level 1); West Bengal (admin level 1),India,Aves; Galliformes; Anas,2011_12_16_1; 2011_09_23_3,1, +272,flu_00273,2015-04-01 to 2015-04-01,H5N1 subtype,"Kadiogo (admin level 2), Centre Region, Burkina Faso (admin level 1); Sanguié (admin level 2), Centre-Ouest Region (admin level 1)",Burkina Faso,Galliformes,2015_04_03_4,1, +255,flu_00256,2017-03-22 to 2017-03-22,H5N1 subtype,"Tây Ninh (admin level 2), Tay Ninh Province (admin level 1)",Vietnam,Aves; Galliformes,2017_03_22_13,1, +65,flu_00066,2016-01-16 to 2016-03-04,H5N1 subtype,Giza Governorate (admin level 1); Cairo Governorate (admin level 1),Egypt,Aves; Homo sapiens,2016_01_29_5; 2016_01_22_2; 2016_03_21_9,1, +185,flu_00186,2017-05-05 to 2017-05-05,H5N8 subtype,England (admin level 1),United Kingdom,Aves; Gallus gallus,2017_05_12_11,1, +117,flu_00118,2011-11-17 to 2011-11-17,H5N2 subtype,Western Cape (admin level 1),South Africa,Aves; Galliformes,2011_11_17_7,1, +231,flu_00232,2010-05-17 to 2010-05-28,H5N1 subtype,"West Bank (admin level 1); Tulkarm Governorate (admin level 2), West Bank (admin level 1)",Israel,Aves; Gallus gallus; Galliformes,2010_05_17_4; 2010_05_28_6,1, +256,flu_00257,2016-11-12 to 2016-11-12,H5N8 subtype,Åland Islands (admin level 1),Finland,Aves; Galliformes; Anas,2016_12_06_2,1, +30,flu_00031,2013-10-28 to 2015-06-12,H7N9 subtype,"Jiangsu (admin level 1); Anhui Province (admin level 1); Fujian (admin level 1); Guangdong (admin level 1); Jiangmen (admin level 2), Guangdong (admin level 1); Meizhou (kapital sa prepektura sa Republikang Popular sa Tsina) (admin level 2), Guangdong (admin level 1); Dongguan (admin level 2), Guangdong (admin level 1); Heyuan (admin level 2), Guangdong (admin level 1); Zhuhai (admin level 2), Guangdong (admin level 1); Shandong (admin level 1); Jiangxi (admin level 1); Anhui (admin level 1); Guangzhou (kapital sa lalawigan) (admin level 2), Guangdong (admin level 1); Hong Kong (admin level 1); Jiangsu Province (Republic of China) (admin level 1); Beijing (admin level 1); Hubei (admin level 1); Zhongshan (admin level 2), Guangdong (admin level 1); Shenzhen (admin level 2), Guangdong (admin level 1); Zhejiang (admin level 1); Shanghai (admin level 1); Guangxi Zhuang Autonomous Region (admin level 1); Urumqi (admin level 2), Xinjiang (admin level 1); Yangjiang (admin level 2), Guangdong (admin level 1); Hebei (admin level 1); Chaoyang (admin level 2), Liaoning (admin level 1); Hunan (admin level 1); Guizhou (admin level 1)",People's Republic of China,Aves; Gallus gallus; Galliformes; Anas; Homo sapiens,2015_03_06_6; 2014_12_29_9; 2013_11_08_4; 2014_01_31_3; 2016_10_03_6; 2013_12_13_2; 2014_03_07_2; 2014_02_19_1; 2014_02_07_3; 2014_11_12_2; 2014_05_16_2; 2014_05_23_1; 2014_06_17_2; 2014_01_31_2; 2014_12_16_3; 2015_02_13_5; 2014_01_09_7; 2014_03_07_6; 2014_12_23_5; 2014_04_10_9; 2014_06_06_1; 2015_01_08_11; 2014_05_30_1; 2015_01_30_6; 2014_03_07_7; 2014_01_22_6; 2015_05_01_8; 2014_06_23_3; 2014_07_21_1; 2014_02_19_12; 2013_12_06_3; 2013_10_28_4; 2014_11_03_10; 2014_10_24_5; 2014_03_07_13; 2015_03_02_11; 2015_05_29_7; 2015_06_12_5; 2014_05_16_1; 2015_01_08_6; 2014_01_09_10; 2014_01_31_6; 2014_12_09_5; 2014_04_10_4,1, +160,flu_00161,2008-07-25 to 2008-09-08,H5N1 subtype,"New London County, Connecticut (admin level 2), Connecticut (admin level 1); California (admin level 1); La Crosse County (admin level 2), Wisconsin (admin level 1); Idaho (admin level 1)",United States of America,Galliformes; Gallus gallus; Aves; Homo sapiens,2008_09_08_2; 2008_09_08_4; 2008_07_25_5,1, +76,flu_00077,2009-08-05 to 2009-09-08,H5N1 subtype,"Meeker County (admin level 2), Minnesota (admin level 1)",United States of America,Aves; Galliformes; Anas; Homo sapiens,2009_09_08_1; 2009_09_01_1; 2009_08_07_2,1, +262,flu_00263,2016-01-11 to 2016-01-11,H5N1 subtype,Scotland (admin level 1),United Kingdom,Aves; Gallus gallus; Galliformes,2016_01_15_4,1, +22,flu_00023,2016-11-28 to 2017-1-24,H5N8 subtype,Aomori Prefecture (admin level 1); Niigata Prefecture (admin level 1),Japan,Aves; Gallus gallus; Anas; Homo sapiens,2016_12_06_13; 2017_02_01_10; 2016_12_13_16,1, +34,flu_00035,2012-02-24 to 2012-02-24,H5N1 subtype,Yangon Region (admin level 1); Sagaing Region (admin level 1); Mandalay Region (admin level 1),Myanmar,Aves; Gallus gallus; Galliformes,2012_03_06_3,1, +240,flu_00241,2008-04-08 to 2008-07-25,H5N1 subtype,"Primorsky Krai (admin level 1); Perm Krai (admin level 1); Republic of Crimea (admin level 1); Altai Krai (admin level 1); Ural Oblast (admin level 2), Russian Republic (admin level 1)",Russia,Aves; Gallus gallus; Galliformes; Anas,2008_06_02_1; 2008_07_25_2; 2008_04_18_2,1, +223,flu_00224,2016-12-26 to 2017-02-07,H5N1 subtype,Odisha (admin level 1); Andaman and Nicobar Islands (admin level 1),India,Aves; Gallus gallus; Galliformes; Anas,2017_01_10_11; 2017_01_13_4,1, +35,flu_00036,2006-11-14 to 2007-06-04,H5N1 subtype,"Lhasa (admin level 2), Tibet (admin level 1); Anhui Province (admin level 1); Nanchang (admin level 2), Jiangxi (admin level 1); New London County, Connecticut (admin level 2), Connecticut (admin level 1); Hong Kong (admin level 1); Hunan (admin level 1); Districtul Kuchinarai (admin level 2), Kalasin (admin level 1); Heilongjiang (admin level 1)",People's Republic of China,Aves; Pica pica; Lonchura punctulata; Falco peregrinus; Lanius schach; Sturnus vulgaris; Psittacidae; Galliformes; Pionus menstruus; Homo sapiens; Corvus splendens; Gallus gallus; Sturnus sericeus; Anas,2007_06_01_1; 2007_01_18_4; 2007_01_08_2; 2007_04_06_1; 2007_02_07_1; 2007_02_16_1; 2006_11_14_1; 2006_12_07_1; 2007_03_20_1; 2007_03_08_1; 2007_05_30_2; 2007_06_12_1; 2007_06_15_1; 2007_06_22_1; 2007_01_22_1; 2007_01_18_1,1, +19,flu_00020,2016-01-29 to 2016-04-11,H5N1 subtype,South Sulawesi (admin level 1),Indonesia,Aves; Gallus gallus; Anas,2016_01_29_1; 2016_03_21_3; 2016_04_11_2,1, +295,flu_00296,2016-01-08 to 2016-01-11,Influenza A virus,Taichung (admin level 1),Taiwan,Passeridae,2016_01_15_1,1, +71,flu_00072,2014-10-01 to 2015-03-06,H5N1 subtype,Giza Governorate (admin level 1); Sohag Governorate (admin level 1); Beheira Governorate (admin level 1); Cairo Governorate (admin level 1); Minya Governorate (admin level 1); Faiyum Governorate (admin level 1); Beni Suef Governorate (admin level 1),Egypt,Aves; Gallus gallus; Galliformes; Homo sapiens,2014_11_25_4; 2014_12_09_6; 2014_12_16_5; 2014_12_23_6; 2015_02_13_6; 2014_10_06_2; 2015_01_23_12; 2014_12_29_8; 2015_03_06_7; 2015_03_13_5; 2015_03_02_13; 2014_12_19_6; 2015_01_30_8,1, +125,flu_00126,2010-11-02 to 2010-11-02,H5N1 subtype,Connecticut (admin level 1),United States of America,Homo sapiens,2010_11_05_2,1, +130,flu_00131,2012-05-22 to 2012-05-22,H5N1 subtype,Tripura (admin level 1),India,Aves; Galliformes,2012_05_22_1,1, +150,flu_00151,2014-11-25 to 2015-01-08,Influenza A virus,Miyazaki Prefecture (admin level 1),Japan,Aves; Gallus gallus; Galliformes,2015_01_08_5; 2014_11_25_1,1, +29,flu_00030,2012-08-10 to 2012-09-25,H5N1 subtype,Central Java Province (admin level 1); Special Region of Yogyakarta (admin level 1),Indonesia,Aves; Galliformes; Anas; Homo sapiens,2012_08_20_3; 2012_12_27_2,1, +81,flu_00082,2015-09-30 to 2015-11-20,H5N8 subtype,"North Chungcheong Province (admin level 1); North Pyeongan Province, Republic of Korea (admin level 1); South Jeolla Province (admin level 1); district de Eumseong (admin level 2), North Chungcheong Province (admin level 1)",South Korea,Aves; Gallus gallus; Anas,2015_10_28_4; 2015_09_30_4; 2015_10_05_5; 2015_11_20_4,1, +94,flu_00095,2011-06-30 to 2011-06-30,H5N1 subtype,"West Java Province (admin level 1); Ratchasan (admin level 2), Chachoengsao (admin level 1)",Thailand,Aves; Homo sapiens,2011_07_11_4,1, +203,flu_00204,2015-03-31 to 2015-03-31,H5N1 subtype,"Kabupatén Tangerang (admin level 2), Banten Province (admin level 1)",Indonesia,Homo sapiens,2015_04_03_9,1, +134,flu_00135,2006-12-01 to 2006-12-01,H5N1 subtype,"Essex County (admin level 2), Massachusetts (admin level 1)",United States of America,Aves; Sus scrofa,2006_12_01_1,1, +16,flu_00017,2009-10-26 to 2009-10-26,H5N1 subtype,Guangdong (admin level 1); Hong Kong (admin level 1),People's Republic of China,Homo sapiens,2009_11_06_3,1, +167,flu_00168,2010-06-29 to 2010-08-18,H5N1 subtype,"Rajshahi Division (admin level 1); Narayanganj District (admin level 2), Dhaka Division (admin level 1)",Bangladesh,Gallus gallus; Galliformes; Anas; Sus scrofa,2010_08_16_3; 2010_06_29_2; 2010_08_18_3,1, +171,flu_00172,2016-11-07 to 2016-12-19,H5N8 subtype,Krasnodar Krai (admin level 1),Russia,Aves; Sus scrofa; Galliformes; Homo sapiens,2016_12_06_16; 2016_12_29_8,1, +285,flu_00286,2017-01-23 to 2017-03-08,Influenza A virus,"Budaka (admin level 2), Eastern Region (admin level 1); Masaka (admin level 2), Central Region (admin level 1)",Uganda,Aves; Gallus gallus; Anas,2017_03_08_4; 2017_01_23_5,1, +74,flu_00075,2009-12-22 to 2009-12-22,H1N1 subtype,England (admin level 1),United Kingdom,Sus scrofa,2010_01_12_12,1, +90,flu_00091,2010-07-02 to 2010-07-18,H5N1 subtype,"Juneau, Alaska (admin level 2), Alaska (admin level 1); Gia Lai (admin level 1)",United States of America,Aves; Gallus gallus; Galliformes; Anas,2010_08_16_5; 2010_08_18_5; 2010_07_02_1,1, \ No newline at end of file diff --git a/data/entity_resolver_output/selected-unmatched-tuples-2018-11-19.csv b/data/entity_resolver_output/selected-unmatched-tuples-2018-11-19.csv new file mode 100644 index 0000000..17ddd1a --- /dev/null +++ b/data/entity_resolver_output/selected-unmatched-tuples-2018-11-19.csv @@ -0,0 +1,30 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host,false_negative,epidemic_no, +2169,2016_05_20_4,2016-05-20,H7N7 subtype,Italy (country),Italy,Aves,0,, +712,2016_05_03_3,2016-05-03,H5N1 subtype,Vietnam (country),Vietnam,Aves,0,, +2399,2014_11_03_4,2014-10-24,H5N1 subtype,Lhasa (admin level 2); Tibet (admin level 1),People's Republic of China,Gallus gallus; Anas,0,, +2128,2015_01_30_1,2015-01-30,H5N1 subtype,Kuban-Black Sea Oblast (admin level 2); Russian Soviet Federative Socialist Republic (admin level 1),Soviet Union,Pelecanus crispus; Aves,1,flu_00159,Need to fix country and location in databases +2347,2009_01_14_4,2008-12-26,H5N1 subtype,Jiangsu Province (Republic of China) (admin level 1),Republic of China (1912–1949),Galliformes; Gallus gallus,1,flu_00013,Need to fix country and location in databases +485,2017_03_03_4,2017-02-22,H5N8 subtype,South Korea (country),South Korea,Anas; Galliformes,0,, +2096,2017_06_06_7,2017-05-17,H5N8 subtype,Zimbabwe (country),Zimbabwe,Aves,0,, +2300,2017_03_22_8,2017-03-22,H5N6 subtype,South Korea (country),South Korea,Aves,0,, +2199,2016_01_08_2,2016-01-08,H5N1 subtype,France (country),France,Galliformes; Aves,0,, +142,2008_11_14_4,2008-11-08,H5N1 subtype,Egypt (country),Egypt,Homo sapiens,0,, +1503,2013_04_12_6,2013-04-04,H5N1 subtype,Dong Thap Province (admin level 1),Vietnam,Gallus gallus; Homo sapiens,0,, +126,2016_01_22_4,2016-01-22,H5N1 subtype,Nigeria (country),Nigeria,Aves,1,flu_00021, +2004,2009_02_06_7,2009-02-06,H5N2 subtype,British Columbia (admin level 1),Canada,Galliformes,0,, +2507,2016_07_12_2,2016-07-04,H5N2 subtype,Canada (country),Canada,Aves,0,, +2184,2016_07_12_4,2016-07-12,H5N6 subtype,Vietnam (country),Vietnam,Aves,0,, +219,2016_12_06_10,2016-11-05,H5N8 subtype,Burundi (country),Burundi,Aves,0,, +444,2014_12_23_4,2014-12-13,H5N1 subtype,Quang Ngai (admin level 2); Quảng Ngãi (admin level 1),Vietnam,Aves,0,, +1814,2006_12_07_3,2006-12-07,H5N1 subtype,Quebec (admin level 1),Canada,Homo sapiens,0,, +2109,2017_05_12_4,2017-04-04,H7N3 subtype,Mexico (country),Mexico,Aves,0,, +201,2017_03_22_4,2017-03-22,H5N1 subtype,Malaysia (country),Malaysia,Gallus gallus; Galliformes; Aves,0,, +1327,2008_08_01_1,2008-08-01,H5N1 subtype,South Korea (country),South Korea,Aves,0,, +24,2015_06_19_3,2015-06-19,H5N1 subtype,Amol County (admin level 2); Mazandaran Province (admin level 1),Iran,Aves; Galliformes,0,, +762,2016_02_22_1,2016-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Corvus,0,, +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves,0,, +655,2009_08_03_3,2009-07-24,H1N1 subtype,Australia (country),Australia,Sus scrofa; Galliformes,0,, +582,2012_01_06_7,2012-01-06,H5N1 subtype,Zimbabwe (country),Zimbabwe,Homo sapiens,0,, +880,2015_08_18_2,2015-08-18,H5N2 subtype,Mexico (country),Mexico,Aves; Galliformes,0,, +1840,2017_02_07_9,2017-01-26,H5N5 subtype,Germany (country),Germany,Galliformes,0,, +505,2017_02_01_6,2017-02-01,H5N1 subtype,Bangladesh (country),Bangladesh,Aves,0,, \ No newline at end of file diff --git a/data/entity_resolver_output/selected-unmatched-tuples-2018-11-30.csv b/data/entity_resolver_output/selected-unmatched-tuples-2018-11-30.csv new file mode 100644 index 0000000..5be1b2a --- /dev/null +++ b/data/entity_resolver_output/selected-unmatched-tuples-2018-11-30.csv @@ -0,0 +1,27 @@ +index,report_id,epidemic_date,flu_pathogen,location,country,host,false_negatives,epidemic_id +2097,2009_01_30_1,2009-01-30,H5N1 subtype,Phitsanulok (admin level 1),Thailand,Aves,0, +2480,2011_08_29_1,2011-08-19,H5N1 subtype,Cambodia (country),Cambodia,Homo sapiens; Galliformes,0, +41,2012_06_28_2,2012-06-13,H7N3 subtype,Jalisco (admin level 1),Mexico,Gallus gallus; Aves; Galliformes; Homo sapiens,0, +880,2015_08_18_2,2015-08-18,H5N2 subtype,Mexico (country),Mexico,Aves; Galliformes,0, +2270,2008_11_07_2,2008-11-07,H5N1 subtype,Tombali Region (admin level 1),Guinea-Bissau,Gallus gallus,0, +1012,2016_12_01_1,2016-11-12,H5N8 subtype,Croatia (country),Croatia,Galliformes; Gallus gallus,0, +268,2008_06_13_2,2008-06-13,H5N1 subtype,North Korea (country),North Korea,Galliformes; Gallus gallus,0, +857,2008_01_18_1,2008-01-18,H5N1 subtype,Romania (country),Romania,Aves,0, +2057,2015_10_28_2,2015-10-28,Influenza A virus,Gaza Strip (admin level 1),State of Palestine,Aves,0, +2287,2017_09_28_1,2017-08-25,H5N8 subtype,Canton of Fribourg (admin level 1),Switzerland,Aves; Homo sapiens,0, +1407,2017_01_10_2,2017-01-10,H5N8 subtype,Ireland (country),Ireland,Galliformes; Homo sapiens,0, +1650,2017_02_07_7,2017-01-31,H5N1 subtype,Cambodia (country),Cambodia,Gallus gallus,0, +1623,2017_08_25_3,2017-08-22,H5N8 subtype,South Africa (country),South Africa,Aves; Gallus gallus,0, +563,2009_07_10_1,2009-07-10,H1N1 subtype,Canada (country),Canada,Sus scrofa,0, +355,2013_11_26_1,2013-11-26,Influenza A virus,Germany (country),Germany,Aves; Homo sapiens,0, +759,2015_08_07_4,2015-08-07,Influenza A virus,Mexico (country),Mexico,Aves,0, +544,2017_08_25_4,2017-08-16,H9N2 subtype,Guangdong (admin level 1),People's Republic of China,Homo sapiens,0, +1476,2014_01_09_3,2013-12-24,H7N7 subtype,South Africa (country),South Africa,Aves; Galliformes,0, +805,2016_10_17_4,2016-10-17,H5N1 subtype,Indonesia (country),Indonesia,Gallus gallus; Sus scrofa; Anas,0, +560,2008_04_30_5,2008-04-13,H5N1 subtype,Egypt (country),Egypt,Homo sapiens; Galliformes,0, +2278,2017_03_22_14,2017-03-22,H5N6 subtype,Vietnam (country),Vietnam,Gallus gallus,0, +1827,2014_12_09_2,2014-12-09,H5N8 subtype,Netherlands (country),Netherlands,Galliformes; Anas; Aves,0, +1013,2014_04_29_2,2014-04-22,H5N8 subtype,Japan (country),Japan,Gallus gallus; Homo sapiens; Aves,0, +655,2009_08_03_3,2009-07-24,H1N1 subtype,Australia (country),Australia,Sus scrofa; Galliformes,0, +34,2016_10_03_1,2016-10-03,H5N5 subtype,Magellan and the Chilean Antarctic Region (admin level 1),Chile,Metazoa; Aves,0, +376,2014_04_21_2,2014-04-21,Influenza A virus,Japan (country),Japan,Gallus gallus; Aves,0, \ No newline at end of file diff --git a/errors.txt b/data/errors.txt similarity index 100% rename from errors.txt rename to data/errors.txt diff --git a/flu-report-html/usgs_avian_flu_report_2006_11_07.html b/data/flu-report-html/usgs_avian_flu_report_2006_11_07.html similarity index 100% rename from flu-report-html/usgs_avian_flu_report_2006_11_07.html rename to data/flu-report-html/usgs_avian_flu_report_2006_11_07.html diff --git a/flu-report-html/usgs_avian_flu_report_2006_11_14.html b/data/flu-report-html/usgs_avian_flu_report_2006_11_14.html similarity index 100% rename from flu-report-html/usgs_avian_flu_report_2006_11_14.html rename to data/flu-report-html/usgs_avian_flu_report_2006_11_14.html diff --git a/flu-report-html/usgs_avian_flu_report_2006_12_01.html b/data/flu-report-html/usgs_avian_flu_report_2006_12_01.html similarity index 100% rename from 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index 0000000..66e0df7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2009_12_14.html @@ -0,0 +1,2081 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 14 +

+

+ + USA + + . A second cat in Oregon has died from pandemic H1N1 (2009) virus after catching the virus from its owner. This cat, an 8-year-old female, had a history of allergies and sinusitis, which may have made it more susceptible to the flu. A 12-year-old female cat from Pennsylvania also recently died from H1N1 infection. According to the American Veterinary Medical association, cats in Utah, Colorado, Iowa, and France have also caught the virus. Veterinarians are concerned that cats may be more sensitive to the virus than humans and Emilio DeBess, public health veterinarian in Oregon, is working with researchers at the Veterinary Diagnostic Laboratory at Oregon State University to find out. +

+

+ In California, scientists are studying the case of Gijima, an 8-year-old cheetah that came down with pandemic H1N1 (2009) virus to determine how she caught the virus and how other zoo animals can be protected. Sharon Hietala, a professor and immunologist at the California Animal Health and Food Safety Laboratory System at UC Davis, heads a lab that tracks H1N1 in animals and is investigating the cheetah’s case. She said, “So as scientists we want to understand the transmission, how this happened and how we can protect other cats or other animals.” It is thought that Gijima caught the virus from an infected employee. She has fully recovered now and none of the other animals have shown symptoms. +

+

+ + Germany + + . An outbreak of pigs that began on November 21 ended on December 7. Two pigs from a herd of 425 in Rhineland-Palatinate died of pandemic H1N1 (2009) virus. The Institute for Diagnosis of Animal Diseases in Koblenz confirmed the presence of the virus. The source of the infection is unknown but the pigs were quarantined during the course of their illness. +

+

+ + Mexico + + . An outbreak of pandemic H1N1 (2009) that began on March 30 and ended on April 1 was recently reported to the World Organization for Animal Health (OIE). Two pigs from a herd of 360 came down with the disease from an unknown source. Tests to confirm the presence of the virus were run by the Mexico-United States Commission for the Prevention of Foot and Mouth Disease and Other Exotic Diseases of Animals. One of the pigs was slaughtered and the other responded well to treatment with enrofloxacin and gentamicin. Further measures, such as movement control of animals, screening, and zoning have been taken to prevent the spread of the disease. +

+

+ + UK + + . Pigs on a commercial farm in Northern Ireland came down with pandemic H1N1 (2009) on December 2. The farm holds 2,000 pigs, 58 of which showed clinical signs such as lethargy and loss of appetite. Tests by the Veterinary Sciences Division in Stormont and the Veterinary Laboratories Agency in Weybridge confirmed H1N1. The disease was discovered as part of an incidental investigation following the outbreak of another disease; investigations continue. The origin of the outbreak is unknown. One sow was slaughtered for diagnostic purposes, but the rest of the animals were treated with antibiotics and have recovered fully. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 5-month-old boy from Karawang regency died at Hasan Sadikin Hospital on December 3. Doctors suspect that pandemic H1N1 2009 may have been the cause. The baby had shown symptoms such as a high fever and respiratory trouble since November 25 and it is not known whether he had contact with animals. After hospitalization the baby was treated with antibiotics and placed on a ventilator. Initial tests were negative for both H1N1 and H5N1, but people are still concerned because pandemic H1N1 (2009) virus has been spreading rapidly in the area. +

+

+ + Vietnam + + . A 23-year-old man from Dien Bien Phu died of bird flu on November 28. According to the Ministry of Health, the man had been admitted to the hospital with a high fever on November 26. Tests confirmed H5N1 as the cause of death. This is the fifth case of H5N1 in Vietnam this year; all of them have been fatal. The head of the National Preventative Health Department, Dr. Nguyen Huy Nga, said the high fatality rate is a result of patient failure to report to the hospital early. The Ministry of Health also confirmed on November 30 that two more people, a 20-year-old pregnant woman from Khanh Hoa province and a 59-year-old man from Quang Ninh, have died of pandemic H1N1 (2009) virus. Out of 10,891 cases of H1N1 reported in Vietnam, 44 people have died. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2009_12_22.html b/data/flu-report-html/usgs_avian_flu_report_2009_12_22.html new file mode 100644 index 0000000..2015a74 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2009_12_22.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 22 +

+

+ + Netherlands + + . A new disease that people are calling “goat flu,” but is more accurately called Q fever is attacking goats, sheep, and people in the Netherlands. The disease is caused by the bacterium Coxiella burnetii, not an influenza virus, but the symptoms are similar to influenza. This disease has infected around 2,300 people in the Netherlands and 6 have died, all of whom had other health problems. The government is planning to cull around 15,000 to 20,000 goats and sheep to prevent the spread of the disease. +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . According to an announcement made by the Animal Health Department on December 15, H5N1 bird flu recurred in Thai Nguyen Province, killing 405 birds. Two communes in the province were affected. Preventative measures such as the culling of 4,100 ducks, 102 chickens, and 17,750 eggs have been taken. Ca Mau Province is also currently experiencing an H5N1 outbreak. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . A 57 year-old man from the Ponhea Kraek district in Kampong Cham province has been confirmed to be infected with the H5N1 virus by the Ministry of Health of Cambodia. The man developed respiratory symptoms on Dec 11 and was hospitalized on Dec 16. The Ministry is investigating the source of the man’s infection. +

+

+ + Egypt + + . The Ministry of Health reported a new case of H5N1 bird flu on December 19. A 21-year-old woman from El Tanta District came down with symptoms on December 15. She had been involved in slaughtering sick birds, which is the likely way that she caught the disease. The diagnosis was confirmed by tests at the Egyptian Central Public Health Laboratories. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_01_12.html b/data/flu-report-html/usgs_avian_flu_report_2010_01_12.html new file mode 100644 index 0000000..c2cb235 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_01_12.html @@ -0,0 +1,2143 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + Hong Kong + + . On December 10, a spokesman for the Agriculture, Fisheries and Conservation Department (AFCD) confirmed that a nasal swab sample taken at a local pig farm on November 26 has tested positive for pandemic H1N1 (2009) virus. The farm is in the Yuen Long district and houses 1,200 pigs. None of the workers or pigs on the farm showed any clinical signs of flu. More samples have been taken from animals on the farm and their movement has been restricted. All of the more recent samples and others taken from nearby farms have tested negative so far. The AFCD will continue to monitor for the virus and will take samples from any animals with clinical symptoms. They have reminded farmers to stay vigilant, report problems, implement biosecurity measures, and practice good hygiene. In addition, they have distributed advisory letters on the prevention of H1N1 and implemented a human vaccination program on December 21, targeting those involved in farming and slaughtering pigs. +

+

+ + South Korea + + . Pandemic H1N1 (2009) virus has been detected on another farm in Kyongsang-Namdo province on December 31. Seventeen of the 2,000 pigs on the farm tested positive for the disease. The source of the outbreak is unknown, but the movement of animals on the farm has been restricted and the premises have been disinfected to prevent the spread of the virus. +

+

+ Between December 14 and 18, 15 outbreaks of pandemic H1N1 (2009) virus began on South Korean farms; 9 in Kyonsang-Bukdo province, 2 in Kyonggi-Do province, 2 in Cholla-Namdo, 1 in Cheju-Do province, and 1 in Kyonsang-Namdo province; totaling 241 confirmed cases out of 23,691 pigs on these farms. The Ministry for Food, Agriculture, Forestry and Fisheries discovered the outbreaks during routine monitoring and the National Veterinary Research Quarantine Service confirmed the disease. Pigs on the farms have been put under movement restrictions for three weeks. +

+

+ + Russia + + . On a farm in the Chuvashskaya province, the Federal Centre for Animal Health confirmed 45 cases of pandemic H1N1 (2009) virus. The outbreak was confirmed on December 3, but probably began on November 10. The farm holds 10,625 pigs, but the cases were isolated to one building holding 1,800 pigs. The pigs are thought to have contracted the disease through contact with infected personnel. A ban has been placed on the trade of live pigs or swine products from the farm unless they have undergone thermal treatment. The farm has also implemented regular aerosol disinfection. +

+

+ + UK + + . An outbreak of pandemic H1N1 (2009) virus in piglets began December 22 on a commercial farm in Norfolk, England. 1,124 out of 2,004 animals on the farm were infected. The infected piglets were coughing but not lethargic. Most of them recovered fully but 3 were slaughtered for diagnostic purposes. The Veterinary Laboratories Agency is conducting an epidemiological investigation. The farm has instituted voluntary movement controls. +

+

+ + USA + + . A dog in New York is the first in the United States to be diagnosed with pandemic H1N1 (2009) virus. The 13-year-old mixed-breed male is thought to have caught the disease from its owner and is now recovering. The American Veterinary Medical Association said that there is still no evidence that the virus could be transferred from pets to humans. Dr. Anne Schuchat of the Centers for Disease Control (CDC) said that it is rare for pets to spread flu viruses. +

+

+ Pigs on two farms in North Carolina have been diagnosed with pandemic H1N1 (2009) virus. Samples were tested and confirmed positive by the U.S. Department of Agriculture's National Veterinary Services Laboratory. The animals have fully recovered under the care of a private veterinarian. The pigs were tested after they showed signs of mild illness. State veterinarian, David Marshall, said, “These cases show that our surveillance system is working.” It appears that the animals on both farms caught the disease from humans. "We want to reassure the public that it is safe to eat pork from swine that have been infected previously and recovered from influenza viruses, including novel viruses," state health director Jeff Engel said. "As always, we will continue to work closely with the Department of Agriculture and Consumer Services to protect the health and safety of the public." +

+

+ + Texas + + . Japan banned the import of poultry and eggs from Texas due to the discovery of a “weak positive” result for avian flu by the Texas Animal Health Commission during routine testing at a live bird market. According to an e-mailed statement from the agency, they restricted movement of about 1,000 domesticated ducks in the north-central part of the state after the test results. The birds were not part of a commercial flock, but were bought and slaughtered at the market. The ducks showed no signs of clinical illness. Additional samples are being taken from the flock of ducks and flocks near the market are under surveillance. +

+

+
+ + H5N1 in Wild birds +
+ Hong Kong +
+ . According to the Agriculture, Fisheries, and Conservation Department, H5N1 has been identified from the carcass of an oriental magpie robin found on December 29. There are no commercial chicken farms within a three-kilometer radius of the location where the bird was found. A total of 16 wild birds have tested positive for bird flu in Hong Kong in 2009. +

+

+ + India + + . At least a dozen migratory bar-headed geese were found dead on January 7 and 8 at Kaziranga National Park in Assam. The geese had recently arrived at the sanctuary from Siberia and officials are concerned that they may have died from bird flu. "A team of experts, including veterinarians, are carrying out post-mortems of the birds and samples will be sent to Bhopal to find out if the deaths were due to avian influenza or some other disease," a park ranger told the Indo-Asian News Service. Forest guards have been alerted to watch for other dead birds in the park, which contains 300 species of birds, 100 of which are migratory. +

+

+ + H5N1 in Poultry +
+ Cambodia +
+ . An outbreak of H5N1 in some backyard poultry in a village in Kang Cham province began on December 16. The village has a total of 1,012 chickens and 204 ducks. 143 birds died from the disease and another 875 were culled to prevent the spread of the virus. Other preventative measures have been enacted, such as movement control within the country, disinfection of affected premises, and modified stamping out. Tests at the Pasteur Institute in Cambodia and the National Veterinary Research Institute confirmed H5N1 bird flu. +

+

+ + India + + . More than 2,000 birds, including domestic poultry, were found dead in a village in Burdwan district and H5N1 bird flu is suspected. The State Animal Resources Development Department has sent in a team to collect samples, but results will not be ready for a few days. Narayan Biswas, state Animal Resource Development Minister, said, “There is no need to panic. The samples have been sent for testing. Birds have died, but there can be a number of reasons behind it. We are prepared to tackle any outbreak.” +

+

+ + Vietnam + + . Twenty-seven birds from a flock of 53 in a village in Cao Bang province died of H5N1 bird flu. The other 26 were destroyed to prevent the spread of the disease. Other preventative measures have been taken, such as quarantine, movement control inside the country, disinfection of infected premises, and modified stamping out. The outbreak may have been caused by illegal movement of animals, introduction of new live animals, or fomites (humans, vehicles, feed, etc.). Tests at the National Center for Veterinary Diagnosis confirmed H5N1 bird flu. +

+

+ + South Korea + + . Low pathogenic H5N2 bird flu has broken out on a duck farm in Chung Chong-Namdo province. Forty of 26,800 ducks tested positive for the disease, but the source of the infection is unknown. The Livestock Health Control Association collected samples from the farm as part of a routine surveillance program and the Chungchong-Namdo Veterinary Research Institute tested them on December 7. The National Veterinary Research and Quarantine Service confirmed the results on December 22. All of the ducks on the farm were culled and the 176,000 eggs kept on the farm were destroyed to prevent the spread of the virus. The carcasses of the ducks were burned and buried. An investigation of epidemiologically related farms is currently underway. +

+

+ + H5N1 in Humans +
+ Hong Kong +
+ . A 3-year-old girl was recently diagnosed with H9N2 bird flu, a mild form of influenza that rarely occurs in humans. The Center for Health Protection said that the girl has been ill with a cough, fever, and runny nose since late November. She was admitted to a local hospital and a respiratory sample confirmed H9N2. The girl was discharged on December 11 and has recovered. An investigation into the cause of the disease is underway. +

+

+ + Indonesia + + . A 65-year-old woman is being treated at Sanglah hospital for suspected H5N1 bird flu. The woman had been experiencing fever and shortness of breath since January 2 when some of her chickens died suddenly and was rushed to the hospital on January 6 when she felt like she could not breathe. Klungkung Veterinary office confirmed that her chickens had died of H5N1. Dr. Ken Wirasandi, Sanglah hospital's Secretary of Avian Flu Prevention Program, said that her condition was stabilizing. +

+

+ A 2-year-old boy who was being treated for suspected bird flu died in isolation in Pekanbaru, Riau. A member of the hospital staff said that the boy had been fairly stable, but his condition deteriorated rapidly on the day that he died. The hospital is awaiting test results from the Health Ministry’s laboratory in Jakarta to confirm the cause of death. +

+

+ Indonesia’s Ministry of Health reported in late December that the country had experienced 20 cases of H5N1 in 2009 and 19 of them were fatal (case fatality rate of 95%). The report did not give many details but said that the last reported case had been in South Jakarta on September 23. Since 2005 there have been 161 human cases of H5N1 in Indonesia and 134 deaths. + ( + + more... + + ) +

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+ + Summary 2009 + +
+ In 2009, reports of HPAI H5N1 were dwarfed by the emergence of the pandemic H1N1 (swine flu) virus in April and by cutbacks in national surveillance programs. However, HPAI H5N1 outbreaks were reported in 17 countries, many of which had been affected in the past. During 2009, Egypt reported 39 human HPAI H5N1 cases, including 4 deaths, and Indonesia reported 20 human cases, 19 of which were fatal. Vietnam reported 140 poultry HPAI H5N1 outbreaks in 18 provinces and cities. Only two of Indonesia’s 33 provinces were considered HPAI H5N1-free in 2009 and during the first six months of 2009, 100 villages in 20 governorates had HPAI H5N1 outbreaks; in the month of October alone, 134 villages were positive for HPAI H5N1. +

+

+ Passive (mortality) surveillance systems have been advocated as an effective mechanism for HPAI H5N1 surveillance. The best example is perhaps Hong Kong, which reported 26% of worldwide cases of HPAI H5N1 infection in wild birds in 2009. The island territory constitutes just over 1,000 square kilometers and exercises stringent biosecurity on its poultry operations, but its proximity to HPAI H5N1-endemic countries in the region, high urban to rural land use, dense population, motivated public, and sustained surveillance systems make the discovery of dead bird carcasses likely. +

+

+ In contrast, no wild birds infected with HPAI H5N1 were reported in endemic countries such as Indonesia, Vietnam, or Egypt in 2009. However, HPAI H5N1 infections in wild birds were reported in China, Mongolia, and Russia. The indication that wild birds continue to be exposed to HPAI H5N1 was reinforced at the 5th APEIR (Asian Partnership on Emerging Infectious Diseases Research) regional meeting, where more than 30 institutional partners met at Kunming, China in January 2010. One APEIR study focuses is on the surveillance and monitoring of avian influenza viruses in migratory birds. “This study concluded that wild birds are likely transmission vectors of avian influenza (AI), H5N1. There are differences between countries and between bird species. Wetlands and lakes along the flight paths of migratory birds are zones where highly pathogenic avian viruses remain viable and can be spread through wild bird migration. The study shows that some migratory birds’ flight paths are closely related with outbreaks of H5N1 in poultry in space and time. The work has led to new H5N1 detection mechanisms and raised research priority on the role of wild birds in transmission of AI” (APEIR statement 1/15/10). +

+

+ + News Update + +
+ + Italy + + . Two pigs on a farm in Sicily tested positive for pandemic H1N1 (2009) virus after showing symptoms of influenza beginning December 3. One of the two pigs that had originally fallen ill was slaughtered and the remaining pigs on the farm (12) were tested for infection. Nine pigs tested positive for antibodies to the virus and all of them tested negative for the virus. All of the pigs recovered fully within a few days. The origin of the outbreak is unknown. +

+

+ + H5N1 in Wild birds + +
+ Recent research by scientists from China, Vietnam, Cambodia, Thailand, and Indonesia has shown that outbreaks of H5N1 are closely related to the migration of wild birds. They presented their research at the fifth regional meeting of the Asian Partnership on Emerging Infectious Diseases Research (APEIR). According to Lei Fumin, researcher of Institute of Zoology with Chinese Academy of Sciences, the research team studied avian influenza outbreaks along the bird migration routes in the Qinghai-Tibet Plateau. Their study indicated that outbreaks often coincide with migration patterns in time and location. Lakes and wetlands were found to be of particular importance in the transmission of influenza viruses. The research showed that the role of wild birds in the transmission of bird flu requires attention. Dr. Witthawat Wiriyarat from Thailand, who joined the research team, proposed to form a regional surveillance network to monitor avian influenza viruses in migratory birds. The discovery of large quantities of migratory bird carcasses in some of the lakes around the plateau in 2005 caused scientists to investigate the role of migratory birds in the transmission of bird flu. +

+

+ + H5N1 in Poultry + +
+ + India + + . The Animal Disease Laboratory in Bhopal has confirmed H5N1 bird flu as the cause of death for two hens in Murshidabad district. The district administration began a culling operation on January 14 to prevent the spread of the disease. The culling will take place within a 3-kilometer radius of the villages where the hens died and farmers will be compensated for culled birds. There are also twenty teams working on disinfection in ten villages. As a further precaution, the movement of poultry products in the area has been restricted. Between January 5 and January 15, over 1,000 hens and ducks died mysteriously in various villages in Murshidabad. Officials initially thought that the birds had died of cold and Ranikhet disease, but as the number of dying birds increased, they became concerned and decided to test for bird flu. +

+

+ + Indonesia + + . The Livestock Service of South Lampung has announced a return of bird flu in the area. Three outbreaks of bird flu have occurred since the beginning of 2010, killing a total of 94 birds. According to the head of Animal Health and Veterinary Public Health of South Lampung, Agung Kusmartuti, the area is susceptible for bird flu transmission because it functions as a trading area with high activity and dense poultry movement. The Livestock Service has instituted control measures, including disinfection of chicken houses and raising public awareness. Seasonal effects may have caused the increase in bird flu prevalence, since this is the peak of the rainy season in Indonesia. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . A 20-year-old woman from Beni Suef governorate was hospitalized for suspected bird flu. The woman had handled dead birds that are thought to have died from the disease. She came down with symptoms such as fever, cough, sore throat and difficulty breathing on January 6 and was hospitalized on January 11. She was treated with Tamiflu and is in stable condition. This is the 91st case of bird flu in Egypt since the first outbreak of the disease. +

+

+ + Indonésia + + . A 17-year-old boy suspected of having contracted the H5N1 bird flu virus is in critical condition at the Arifin Achmad regional public hospital in Pekanbaru, Riau. According to the head of bird flu control, Azisman Saad, the patient is receiving intensive care in an isolated room but is still in a coma-like condition with a high fever. A sample has been sent for testing to confirm H5N1. It is not known how the patient was infected, but he began to show symptoms on January 15. The hospital recently cured a 4-year-old girl who had tested positive for H5N1 bird flu. She has fully recovered and has been moved from isolation to an ordinary ward for observation. +

+

+ + USA (H3N2) + + . The Centers for Disease Control reported on January 15 that a boy from Iowa had contracted an H3N2 strain of swine flu that is different from both the pandemic H1N1 (2009) virus and seasonal H3N2 strains. An investigation showed no evidence of person-to-person transfer so the strain is not likely to spread. The boy caught the strain in September, but was not tested until November. He did not need to be hospitalized and recovered fully on his own. “While these cases are rare, they're not unheard of," Tom Skinner, a spokesman for the CDC, said, "We do detect them from time to time and it's important for us to investigate, which happened in this case. And luckily there wasn't any evidence of sustained person-to-person transmission." It is not known how the boy contracted the virus. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_01_27.html b/data/flu-report-html/usgs_avian_flu_report_2010_01_27.html new file mode 100644 index 0000000..f25adaa --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_01_27.html @@ -0,0 +1,2080 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jan 27, 2010 +

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+ News Update, January 27 +

+

+ + H1N1 in animals +
+ France +
+ . Tests at AFSSA (French Agency for Food Safety) laboratory confirmed that turkeys on a breeder farm in northeastern France were infected with the pandemic H1N1 (2009) virus. The farmers became concerned about the health of the flock when they noticed a significant drop in egg production. Approximately 3,000 of the 8,600 birds on the farm had the illness, but there were no mortalities, and the sick birds recovered fully. The farm will continue to be quarantined for 7 days after clinical signs disappear as a preventative measure. The origin of the outbreak is unknown. +

+

+ + Japan + + . On January 12, a worker on a farm in Yamagata prefecture reported to the Livestock Hygiene Service Center that some of the pigs had symptoms such as poor appetite, fever, and cough. The farm holds 2,445 pigs, 164 of which were ill. They took samples from ten of the sick pigs and four of the samples tested positive for pandemic H1N1 (2009) virus at the National Institute of Animal Health. The farm is voluntarily restraining the movement of the animals to prevent the spread of the disease. Some workers had been sick before the outbreak, and an epidemiological investigation is underway. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . An outbreak of H5N1 bird flu occurred in 250 birds from a farm of 1,182 in Rajshahi division on January 4. The rest of the flock was culled and the premises were disinfected to prevent the spread of the disease. Samples tested positive for H5N1 bird flu on January 17 at the Bangladesh Livestock Research Institute. The origin of the outbreak is unknown. +

+

+ + Indonesia + + . Pamekasan regency’s veterinary office destroyed 270 chickens infected with H5N1 bird flu to prevent the disease from spreading in East Java. Chickens in Pademawu Timur village had been dying suddenly. On January 11, veterinary officials came to the village to test the birds and found them positive for H5N1. +

+

+ + Vietnam + + . Four hundred ducks from a flock of 550 in Thach Quy ward in Ha Tinh province died between January 17 and 19. Samples were taken by the provincial Veterinary Department and tested positive for H5N1. The remaining ducks were culled and birds in the surrounding area have been quarantined as a preventative measure. The Department of Animal Health announced on January 24 that 400 ducks and 600 chickens in Cam Xuyen District in Ha Tinh province have died of H5N1 bird flu. The province People’s Committee has banned the sale, slaughter, and transport of poultry in the affected regions. Bird flu has been confirmed in Thang Hung and Thanh Yen communes in Dien Bien province, where approximately 14,400 birds have died. Staff from the Dien Bien District Medical Centre disinfected the premises and taught local residents how to prevent an outbreak. +

+

+ + Taiwan + + (LPAI). In Changhua County, approximately 7,000 chickens from a farm of 50,000 died of H5N2 bird flu. According to a report, no sick chickens were sold on the market. "The bird flu epidemic in the farm has been under control. All staff and animals have been isolated but we are not going to kill all chickens in the farm," said Chou-Che Kuo, head of the prevention unit of Changhua county. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_02_03.html b/data/flu-report-html/usgs_avian_flu_report_2010_02_03.html new file mode 100644 index 0000000..2c9a7f3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_02_03.html @@ -0,0 +1,2083 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, February 3 +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . District veterinarians culled 3,000 chickens on a farm in the Sirajganj district following detection of bird flu and a report to district livestock officials. At first the disease was thought to be Ranikhet (a local term for Newcastle Disease), but after 2,000 birds died, tests were run and confirmed bird flu. According to the local livestock office, about 10,000 birds in the Sadar Upazila reportedly died of Ranikhet between Jan. 10-20, but tests were not carried out to confirm the disease, so there is concern that those birds may have died from bird flu as well. +

+

+ + Indonesia + + . It was announced on January 26 that hundreds of chickens in Jambi province have died from bird flu. The head of the Tebo district animal husbandry and fishery office said "According to the results of laboratory tests, the dead chickens had been infected with the H5N1 virus that causes Avian Influenza." Another 5,500 chickens in two villages in Pirbalingga district in Central Java province have died of bird flu, according to local authorities, who instituted control measures including disinfection, testing, and vaccination. Lampung province also experienced an outbreak of bird flu in January that killed at least 1,176 birds. Residents of Lampung are concerned that thousands of chickens owned by poultry company PT Central Avian Pertiwi have died of bird flu. The birds originally tested negative for bird flu, but when samples were retested at the Lampung Livestock and Animal Husbandry Agency lab, they were positive for H5N1. Twelve thousand laying hens have been culled and tens of thousands of other birds have been quarantined. The poultry farm is now under the supervision of the Tanjungkarang Veterinary Agency, Lampung Husbandry Office and South Lampung Livestock Agency. There are currently outbreaks of H5N1 bird flu in five districts of Lampung. +

+

+ + Israel + + . 100 birds on a farm of 43,000 died from H5N1 bird flu on January 24. Samples from the farm tested positive for H5N1 at the Northern Poultry Disease Laboratory and Kimron Veterinary Institute on January 26. The farm is divided into three poultry houses that are under extremely high biosecurity and clinical signs only appeared in one house. The source of the outbreak is suspected to be contact with infected droppings from wild birds. According to ProMED “Being a biosecurity plant, its staff is required to shower and change clothing when entering the premises. However, after entering, they may walk between the 3 houses in an (enclosed) yard, which is not covered. If infected wild birds, flying above the yard, excrete their droppings there, theoretically the mentioned scenario could be possible.” The article noted that local or migratory birds are known to be infected with H5N1 at the present time. Seven hundred birds have been culled and other preventative measures such as quarantine, movement control, and zoning have been taken. Officials are also planning to stamp out the disease, screen other birds, and disinfect the premises. +

+

+ + Pakistan + + . A farm in Gazipur district culled 531 chickens on January 25 after bird flu was detected. The Field Disease Investigation Laboratory at Jaypurhat confirmed the virus. This is the second farm in the area to suffer from bird flu this month. Jaypurhat District Livestock Officer Dr. Shahidul Islam said, "The virus broke out due to lack of bio-security maintenance. Both the farms are situated adjacent to the dwelling place and people are coming in contact with the farms frequently.” +

+

+ + Vietnam + + . Bird flu is recurring in Dien Bien province. The outbreak began on January 14 and 1,500 chickens have been culled so far. Provincial officials have taken preventative measures such as a ban on the slaughter, transport, and trade of poultry; a ban on processing, eating, or improperly disposing of poultry; and movement control. A second outbreak has been reported in the province of Soc Trang; 350 birds were killed and H5N1 has been confirmed. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 41-year-old man from Cirebon district was hospitalized January 25 with suspected bird flu. He has been showing bird flu-like symptoms, such as high fever and nausea since January 21, and was admitted to Gunungjati General Hospital. He worked as an agriculture and cattle-farming extension officer for a local agriculture and animal husbandry office and had recently come into contact with dead poultry. He is being kept in isolation pending the results of laboratory tests. +

+

+ Arifin Achmad regional hospital in Pekanbaru received two more possible bird flu patients from Riau province. The patients are neighbors, a 6-month-old and a 3-year-old; both are in intensive care. The 3-year-old had contact with some quail two days before developing symptoms, and the parents noted that chickens had recently died in their neighborhood. However, residents consider that normal, and no action has been taken to disinfect the neighborhood. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_02_19.html b/data/flu-report-html/usgs_avian_flu_report_2010_02_19.html new file mode 100644 index 0000000..8c79339 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_02_19.html @@ -0,0 +1,2077 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, February 19 +

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+ + H5N1 in Poultry +
+ Taiwan +
+ . An outbreak of low pathogenic H5N2 bird flu occurred on a second farm in Chang-Hua prefecture. H5N2 was first identified on January 9 in 20 birds from a farm with 29,000.chickens. After the outbreak was identified, an epidemiological investigation was conducted within a 3 km radius of the farm. A second farm had a positive sample and movement control was implemented on both farms. Samples taken from the originating farm tested negative for the virus on February 5 and movement control was released. +

+

+ + Vietnam + + . Thirteen villages in Ha Tinh, Ca Mau, Quang Tri, Nghe An, Nam Dinh, Soc Trang, and Kon Tum provinces are experiencing outbreaks of highly pathogenic H5N1 bird flu. The outbreaks began between January 20 and February 13. From over 28,000 susceptible birds, 8,295 became ill, 6,033 have died, and 14,304 have been culled to prevent the spread of the disease. Possible sources of contamination include the introduction of new live animals, illegal movement of animals, or introduction of inanimate objects that might have carried the virus. Measures such as quarantine, movement control, disinfection of infected premises, and modified stamping out have already been implemented. Plans also exist to screen, zone, and vaccinate animals. Tests were run at the National Center for Veterinary Diagnosis and Regional Animal Health Office No. 7 and came back positive on February 13. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . It was reported on February 15 that a 29-year-old woman from Menoufiya governorate died from H5N1 bird flu. This is the 30th death from H5N1 in Egypt since the disease first broke out in 2006. +

+

+ + Indonesia + + . In Banten province, a 50-year-old man is being treated in isolation at Serang Regional Hospital for suspected bird flu. According to the hospital’s spokesperson, the patient arrived on January 10 with a high fever, sore throat and low white blood cell count. His family reported that he developed the fever after direct contact with chickens that had suddenly died near his house. This is the first suspected bird flu case at Serang Regional Hospital in 2010. Of 27 suspected cases in 2009, one patient died before the laboratory confirmed the diagnosis and 26 were negative. +

+

+ In Jakarta two recent cases of H5N1 infection in humans have been reported. A 25-year-old woman, who was possibly infected through direct contact with poultry, died on January 25. A 3-year-old boy has recovered after showing only mild symptoms of influenza. In both cases, laboratory tests confirmed H5N1 bird flu as the cause of the illness. +

+

+ In Bekasi, West Java province, a 25-year-old died from H5N1 on January 25. According to the Head of Public Communication Center Ministry of Health, laboratory tests were positive for H5N1 bird flu. The patient may have been infected through direct contact with birds. +

+

+ In Lampung province, a patient suspected of being infected with bird flu has been quarantined at Abdul Moeloek General Hospital. The woman had symptoms such as high fever, coughing, and difficulty breathing, and had reportedly been in direct contact with chickens that died suddenly. According to her husband, thousands of chickens near their home, including 15 of their own, died recently. Laboratory tests of the dead chickens showed that they were infected with bird flu. Doctors are awaiting tests results to determine whether or not the patient has bird flu, but have encouraged citizens to be cautious even if the results come back negative because the area is at risk for bird flu. An outbreak in the area two years ago killed thousands of chickens. The dead chickens were burned, but citizens refused to hand over ill chickens to be culled, causing concern among health officials. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_03_01.html b/data/flu-report-html/usgs_avian_flu_report_2010_03_01.html new file mode 100644 index 0000000..7cac39b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_03_01.html @@ -0,0 +1,2081 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds + +
+ A new study headed by Yoshihiro Kawaoka at UW-Madison suggests that it would be possible for H5N1 bird flu and seasonal flu or H1N1 to recombine and form a new strain of flu that would be highly contagious and deadly. Bird flu currently does not transmit easily to humans, but has a high death rate (59%). The new research published in the Proceedings of the National Academy of Science suggests that, in a person co-infected with bird flu and pandemic H1N1 (2009), the viruses could exchange genetic information and produce a new strain. Previous lab studies had suggested that hybrid viruses were less dangerous than their parent strains, but experiments on mice indicate that it is possible for H3N2 and H5N1 influenza viruses to combine into a deadly strain. +

+

+ + H5N1 in Poultry +
+ Bhutan +
+ . On February 23, the Ministry of Agriculture and Forest announced an outbreak of H5N1 bird flu in Chukha Dzongkhag. On February 24, a pair of birds tested positive for H5N1 and 51 chickens were culled. The movement of people and poultry in the area is being controlled by the Bhutan Agriculture and Food Regulatory Authority (BAFRA). In addition, a group of health experts are monitoring people in the affected areas and people have been asked to report the death of any poultry to BAFRA. This is the first time that H5N1 has been reported in Bhutan. While the import of poultry had been banned by BAFRA in January, following an outbreak of bird flu in nearby West Bengal, a local newspaper article published the previous week had warned that monitoring has not been able to prevent poultry products from crossing the border and procedures for disinfection had yet to be established. +

+

+ + Vietnam + + . In Soc Trang province, an outbreak of H5N1 bird flu occurred in a flock of 630 ducks. Five hundred ducks died and the rest were culled to prevent the spread of the disease. Bird flu also recurred on a farm in Nam Dinh province. Provincial health officials killed all 270 ducks on the farm in order to contain the disease. Dozens of bird flu outbreaks have been detected in Ca Mau province since the beginning of the year and a number of measures have been put in place to stop the disease from spreading. More than 5,000 birds have been culled as a result of these outbreaks. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . Two new cases of bird flu in humans were announced by the Ministry of Health on February 17. A 32-year-old man from Menofya governate developed symptoms on February 6 and was hospitalized on February 8. He received treatment with oseltamivir and is in stable condition. A pregnant 29-year-old woman, also from Menofya governate, developed symptoms on February 6 and was hospitalized on February 12. She was treated with oseltamivir, but died on February 13. Investigations suggested that both patients had been in contact with sick and dead poultry. The diagnosis was confirmed by the Egyptian Central Public Health Laboratories. Two patients with previously announced cases of bird flu also died from the disease, a 37-year-old man from Helwan governorate and another 29-year-old woman from Menofya governate. An additional two cases of bird flu were announced on February 19, a 13-year-old boy and a 30-year-old woman from Kafr El-Sheikh governorate. The total number of human cases in Egypt since the first outbreak of the disease is now 102. +

+

+ + Indonesia + + . Four children from Kecamatan Simpangkatis are being treated in Depati Hamzah regional hospital in a special area for bird flu patients. Bird flu is suspected because the children have experienced sustained high fevers and are known to have had contact with dead poultry. The children were found to be sick during a routine investigation after the death of many chickens in the area. Samples have been collected to diagnose the illness and confirmation is expected within a week. A 36-year-old woman and a 16-month-old boy were treated at Tidar Hospital in Central Java for suspected H5N1 bird flu. Both patients are from Kecamatan. The boy has recovered and been discharged, but the woman is still being treated. +

+

+ + Vietnam + + . A 3-year-old girl from Khanh Hoa has tested positive for H5N1 bird flu. This is the first case in Vietnam in 2010. The girl became ill with a fever, sore throat, cough, and runny nose on January 27 and was admitted to Ninh Hoa hospital the next day. Bird flu was confirmed as the cause of illness on February 12 and the girl is reportedly recovering. An investigation near the girl’s home found no signs of bird flu, but a month earlier, ostriches on a farm one kilometer away had died suddenly. The total number of human cases in Vietnam since the first outbreak of the disease is now 112. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_03_09.html b/data/flu-report-html/usgs_avian_flu_report_2010_03_09.html new file mode 100644 index 0000000..e494967 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_03_09.html @@ -0,0 +1,2084 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H1N1 +
+ Hong Kong +
+ . The University of Hong Kong found that one sample taken during regular influenza virus surveillance was primarily a different swine flu strain but had picked up a gene from pandemic H1N1 (2009) by genetic reassortment. This is the first such sample found by the program. The government is monitoring developments, but urges people not to be alarmed as there is no health concern from cooked pork. Scientists are not surprised by this combination of viruses and it is likely that other similar combinations have occurred without being detected. Further tests are underway to determine the characteristics of the strain. +

+

+ + H5N1 in Wild birds +
+ South Korea +
+ . The South Korean government announced on February 26 that it will strengthen measures to prevent and combat bird flu in anticipation of migratory birds arriving in the country. Recent outbreaks in other Southeast Asian countries have caused the Ministry of Food, Agriculture, Forestry and Fisheries to plan ahead in case the virus spreads to local chickens and ducks through the migratory birds. Precautions will include monitoring migratory birds in Heuksan and Hong islands in the Yellow Sea, decontaminating vehicles that carry poultry, and encouraging farmers to implement sterilization procedures twice a week. +

+

+ + H5N1 in Poultry +
+ Myanmar +
+ . An outbreak of bird flu began on February 19 in the Yangon region. A flock of 121 chickens and 5 ducks was affected. Two of the birds died and the rest were culled to prevent the spread of the disease. Samples confirm the presence of H5N1 bird flu. During surveillance, the Livestock Breeding and Veterinary Department received samples of dead chickens and information on unusual mortalities. A detailed investigation is underway. +

+

+ + Vietnam + + . Bird flu outbreaks are ongoing in Ca Mau, Dien Bien, Soc Trang, Nam Dinh, Tuyen Quang, Ha Giang and Khanh Hoa provinces. In Khanh Hoa, 6,770 birds have died in two districts. The Veterinary Department acting director, Hoang Van Nam, reported on March 2 that there was still a high risk of the disease spreading to other localities, especially in the Mekong Delta region. The outbreaks in Tuyen Quang and Ha Giang were reported by the Veterinary Department on March 3, while the disease was first confirmed in birds in Tuyen Quang province on February 26. As of March 1, it was confirmed that 100 chickens were infected; most died from the virus. Health care agencies and local authorities are working together to prevent the spread of the disease. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . On February 24, the Health Ministry announced that a 14-month-old child from Qalyubia governorate had tested positive for H5N1 bird flu. The boy has been treated with Tamiflu and is in stable condition. +

+

+ + Vietnam + + . The Ministry of Health reported Vietnam’s first bird flu fatality in 2010. A 38-year-old woman from Tien Giang province died from the disease on February 25. She went to a clinic with flu-like symptoms on February 23 and was transferred to Sa Dec Hospital in Dong Thap Province because of chest aches and difficulty breathing. It is thought that she contracted the disease by slaughtering infected poultry. Post-mortem tests confirmed bird flu in her system. A 3-year-old girl who was reported as a bird flu patient earlier in the week has recovered. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_03_11.html b/data/flu-report-html/usgs_avian_flu_report_2010_03_11.html new file mode 100644 index 0000000..98aa04a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_03_11.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + Denmark + + . Samples taken from a farm in eastern Denmark during routine surveillance tested positive for low pathogenic H7 bird flu. The outbreak began on March 5 and was confirmed by testing at the National Veterinary Institute on March 9, but the source of the infection is unknown. The farm held 190 mallards and 5 chickens, all of which have been culled to prevent the spread of the disease. Other measures including quarantine, movement control, and zoning have already been taken and there are plans to disinfect the premises. +

+

+ + H5N1 in Poultry +
+ Myanmar +
+ . More chickens on a farm in Sagaing division are have died from H5N1 bird flu. The sudden deaths of chickens in other parts of the division were caused by H5N1, which was verified by laboratory testing. The findings have been reported to the Food and Agriculture Organization and the World Animal Health Organization. The authorities have culled chickens and destroyed eggs on the farm to prevent the spread of the disease. This is the third case of H5N1 bird flu in Myanmar since February. People have been urged to step up bio-security measures by changing their livestock breeding systems; avoiding illegal import, transport and trading of chickens and their products; and promptly reporting suspected bird flu cases. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_03_19.html b/data/flu-report-html/usgs_avian_flu_report_2010_03_19.html new file mode 100644 index 0000000..1f7c59b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_03_19.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, March 19 +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . According to a health official, 2,000 chickens have died in Jambi province +
+ over the past month and bird flu remains a threat. The disease has spread to nearly all of the districts and towns in the province and 50% more chickens have died from bird flu than in February of 2009. The head of the province`s animal husbandry office, Hanis Lubis, said on March 12 that this increase was likely caused by a longer rainy season and the local breeders’ habit of throwing dead chickens into rivers instead of burning them. Most of the chickens that have died belonged to local residents, but there have been no reports of human infection so far. Veterinarians have been deployed to infected areas to improve public awareness of the disease and Lubis urges citizens to immediately inform the animal husbandry office if they find large numbers of chickens that have suddenly died. Bird flu remains a problem in all provinces of Indonesia especially during the rainy season. +

+

+ + Nepal + + . The District Livestock Service Office (DLO) of Nawalparasi announced on March 17 that bird flu has been detected in several Village Development Committees. The district has been declared an emergency zone. After ducks and chickens in the district began to die, the DLO sent samples to Britain for testing. It is reported that many birds have died recently and that residents are afraid that bird flu might spread rapidly because of the improper disposal of dead birds. +

+

+ + Romania + + . Romania’s national laboratory confirmed an outbreak of H5N1 bird flu on a backyard poultry farm in Letea, on the Danube delta. Romania undertook the measures specified under European Union legislation to prevent the spread of the disease, including culling the poultry on the infected farm, establishing a protection zone within a 3 km radius, establishing a surveillance zone within a 10 km radius, banning the gathering of poultry, and strengthening biosecurity measures. This is the first outbreak of bird flu in the European Union in over a year. +

+

+ + Vietnam + + . On March 14, the Bac Ninh provincial People’s Committee announced the occurrence of bird flu in Nam Son commune. 400 birds on a farm began to show signs of illness on March 10 and died on March 11. The birds had been vaccinated for four months. The veterinary agency inspected the farm and found signs of bird flu so they destroyed the remaining birds on the farm and sent samples to a central veterinary diagnostic centre, and had the area disinfected with lime and cloramin B. The Bac Ninh Animal Health Department has set up two temporary checkpoints, suspended all activities involving poultry in markets within Nam Son commune, vaccinated all the fowl in the commune, and is closely monitoring the slaughter of poultry in an effort to prevent the disease from spreading. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health announced two new cases of H5N1 bird flu infection in humans on March 12. The first case is a pregnant, 20-year-old woman from Qalyubiyah governorate. She was hospitalized on March 5, treated with oseltamivir, and died on March 9. The second case is a 1 1/2 year old boy from Kafr el Sheik governorate, who was hospitalized on March 2, treated with oseltamivir, and is in stable condition. Investigations into the cause of infection suggest that both patients had been exposed to sick and dead poultry. The Egyptian Central Public Health Laboratories confirmed H5N1 bird flu as the cause of illness in both cases. The ministry also reported the death of a 53-year-old man from Qalioba governorate who had developed symptoms of bird flu on February 27. Across Egypt to date there have been 106 confirmed cases of H5N1 bird flu in humans and 32 fatalities. +

+

+ + Vietnam + + . According to the Ministry of Health, a 25-year-old woman in Ha Noi tested positive for H5N1 bird flu on March 11. The patient allegedly caught the disease from dead and ill poultry near her home and is now in intensive care at Bach Mai General Hospital. A 3-year-old girl who was infected with H5N1 bird flu died on March 17.. The child was admitted to Children’s Hospital No.2 on March 10 with suspected dengue fever, but developed pneumonia and tested positive for bird flu on March 15. Her condition worsened and she died early on Wednesday. Doctors say that her family lived near a market where chickens were sold. This is the 59th death from bird flu in Vietnam since 2003 and the second death from bird flu in 2010 + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_03_26.html b/data/flu-report-html/usgs_avian_flu_report_2010_03_26.html new file mode 100644 index 0000000..e6b6492 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_03_26.html @@ -0,0 +1,2073 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Poultry +
+ Bangladesh +
+ . On March 21, the Livestock Office culled the remainder of a flock of 3,000 chickens infected with bird flu. The owner of the farm reported the outbreak to the Livestock Office after 1,000 chickens died from the disease. According to the District Livestock Office, tests of dead chickens and ducks in the area have confirmed the presence of bird flu. +

+

+ + Nepal + + . Bird flu has broken out in four locations within the Banke district. Samples were sent to Kathmandu on March 8 after a large number of birds died in the area. As of March 24, more than 50 chickens and other birds had died, and residents in the area expressed concern that the flu would be transmitted to humans. Culling of remaining birds was scheduled for March 25. A rapid response team and a monitoring team have been formed and preventative measures have been stepped up to prevent the spread of the disease. +

+

+ + H5N1 in Humans + +
+ The World Health Organization (WHO) reported on March 24 that bird flu is still a risk to human health. Despite the decline in human cases since 2006, there have been 21 cases in humans and 7 deaths so far this year. Many more cases have been reported in poultry, which poses a threat to human health because humans can become infected through contact with sick poultry. WHO personnel added their concern that “the virus could undergo a process of reassortment with another influenza virus and produce a completely new strain.” According to Dr. Takeshi Kasai, regional advisor for communicable disease surveillance and response, “The influenza virus is unpredictable, in areas where H5N1 is endemic, WHO and its partners are working to build surveillance systems to identify changes in the behaviour of the virus, raising awareness about the risks and protective measures, and building skills and capacity to respond to outbreaks quickly.” The WHO urged people to protect themselves when handling, transporting, slaughtering or processing infected poultry and to maintain good personal and food hygiene to decrease the risk of infection. They also reminded farms to report any death or illness in their flocks to animal health authorities. +

+

+ + Egypt + + . On March 21, the Health Ministry reported that a 4-year-old child had come down with bird flu. The child was hospitalized at Beni Suef General Hospital on March 18 with symptoms including fever, cough, runny nose, and pneumonia after exposure to birds that may have been infected with bird flu. The child was given Tamiflu, transferred to a hospital in Cairo, and is in critical condition. +

+

+ + Indonesia + + . A 59-year-old man from Lampung province died of suspected bird flu on March 18. The man had been sick for a month and bird flu is suspected because many chickens had recently died near his house. He was brought to Immanuel hospital for a check-up and bronchopneumonia was discovered, possibly caused by bird flu and chronic hepatitis B infection. He was transferred to Abdoel Moeloek regional hospital, but died soon after his arrival. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_04_02.html b/data/flu-report-html/usgs_avian_flu_report_2010_04_02.html new file mode 100644 index 0000000..d8955ef --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_04_02.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds +
+ Bulgaria +
+ . According to a report from the National Veterinary Service on March 29, a “fallen” common buzzard in Varna tested positive for H5N1 bird flu. The bird was found by veterinary inspectors who were monitoring influenza among domestic and wild birds in Bulgaria. Results have been confirmed by the National Diagnosis and Research Veterinary Institute in Sofia. +

+

+ + Hong Kong + + . According to the Agriculture, Fisheries & Conservation Department, a barn swallow found dead on March 26 in Yuen Long tested positive for H5N1 bird flu. The Mai Po Nature Reserve in Yuen Long will be closed to visitors for 21 days beginning from March 31 as a precaution. Five chicken farms within a three kilometer radius of the spot where the bird was found were inspected by departmental staff and no abnormal mortalities or symptoms of bird flu were found. The farms will be placed under enhanced surveillance. The department will also increase the inspection of poultry farms, the wholesale market, and the Yuen Po Street Bird Garden. +

+

+ + H5N1 in Poultry +
+ Romania +
+ . On March 27 the veterinary and food safety authority announced a second outbreak of H5N1 in the county of Tulcea. Two chickens in a village on the border with Ukraine had symptoms consistent with bird flu and the entire flock raised by the household has been culled to prevent the spread of the disease. "No other sick birds were found in the rest of the village and no wild birds have been found dead in the area," sanitary authorities said. Samples from the two ill chickens will be sent to Weybridge Laboratory in Britain for testing. A confirmed outbreak of bird flu occurred on another farm in Tulcea county two weeks ago. During that outbreak 49 birds were found dead and surveillance and disinfection measures were taken to prevent the spread of the disease. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health announced on March 28 that a 30-year-old woman from Damietta Governorate has been diagnosed with bird flu. She was admitted to the hospital on March 24, treated with oseltamivir, and is in critical condition. An investigation indicated that the source of the illness is likely exposure to sick and dead poultry. The case was confirmed by the Egyptian Central Public Health Laboratories. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_04_12.html b/data/flu-report-html/usgs_avian_flu_report_2010_04_12.html new file mode 100644 index 0000000..3a16de8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_04_12.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Poultry +
+ Vietnam +
+ . On April 7 the chairman of the Yen Hung district People’s Committee announced a new outbreak of bird flu in his district of Quang Ninh province. The committee is calling for urgent measures to prevent the spread of the disease. Local farmers claim that vaccination did not protect their flocks from infection with bird flu. The Veterinary Department has introduced measures to quarantine infected areas, sterilize breeding farms, and ban the transport and trading of sick poultry. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health announced on April 5 that an 18-year-old woman from Fayoum has died of bird flu; she is the 34th human death from bird flu since the disease first broke out in Egypt. Just one week earlier, Minister of Health Hatem El-Gabaly had praised the success of the government’s plan for combating H5N1 bird flu, since the death rate from the virus has substantially decreased while citizen awareness has increased. Currently, committees are inspecting bird farms around the country to discover bird flu centers. The labs associated with the program have tested 11,565 cases suspected of bird flu. +

+

+ + Vietnam + + . The National Tropical Diseases Hospital in Hanoi announced on April 5 that a 22-year-old man from Bac Kan province is being treated for bird flu. The man is in serious condition and requires the use of a breathing machine. On April 3, the patient was transferred from the province’s General Hospital with a cough and high fever. Tests run on April 4 by the National Epidemiology Institute were positive for H5N1 bird flu. An investigation found dead waterfowl in the man’s neighborhood, and other people in the area with bird-flu like symptoms have been quarantined. Another case of bird flu in a two-year-old girl from Bac Kan province was announced by the Health Ministry on April 9. No further information is available at this time. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_04_19.html b/data/flu-report-html/usgs_avian_flu_report_2010_04_19.html new file mode 100644 index 0000000..151222e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_04_19.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds + +
+ On April 13, researchers for the United States government proposed that wild ducks immune to the effects of H5N1 bird flu could be spreading the virus. Scientists from the US Geological Survey and the University of Tokyo discovered through satellite tracking that some northern pintail ducks flew from bird flu-infected areas in Japan to their nesting sites in Russia. The study does not prove that the pintails carried the H5N1 virus. H5N1 bird flu rarely infects humans, but is a dangerous disease. The World Health Organization had documented 493 cases and 292 deaths since 2003 when the disease first broke out. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health announced a case of H5N1 bird flu in an 18-year-old woman from Fayoum governorate. She was admitted to the hospital on March 31 and treated with oseltamivir, but died on April 4. An investigation suggested that exposure to sick and dead poultry was likely the cause of infection. The Egyptian Central Public Health Laboratories confirmed H5N1 as the cause of her death. +

+

+ + Vietnam + + . A 22-year old man and a 2-year-old girl from Bac Kan province have been hospitalized after testing positive for H5N1 virus according to Hoang Van Linh, Deputy Director of the northern Bac Kan province Health Department. The probable source of the illness was contact with dead poultry near their homes. The man was admitted April 2 and is on a respirator; the toddler, admitted April 4, is in stable condition. Eleven others, some relatives of the patients, have been quarantined with bird flu-like symptoms such as fever, coughing, and shortness of breath, but tests have ruled out H5N1. The homes of the patients have been disinfected and sick poultry in the area have been slaughtered to prevent the spread of the illness. +

+

+ Another patient from Bac Kan province was diagnosed with H5N1 bird flu on April 9. The 27-year-old contracted the disease while visiting a bird-flu infected area. There are other suspected cases at a health care centre in Cho Moi district. Local authorities and health agencies are intensifying emergency measures to sterilize infected areas and monitor new outbreaks. +

+

+ A health official reported on April 15 that two more cases of H5N1 bird flu were confirmed in Bac Kan province. The patients were taken to the hospital in serious condition. They are from the same village as the earlier cases, causing concern that human-to-human transmission might occur. Dr. Tran Nhu Duong, Deputy Director of the Institute of Hygiene and Epidemiology, said that two groups were appointed by the institute to conduct an epidemiological investigation in the village. The groups found that the most recent patients had been infected after contact with dead poultry and there was no evidence suggesting human-to-human transmission. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_04_26.html b/data/flu-report-html/usgs_avian_flu_report_2010_04_26.html new file mode 100644 index 0000000..1b4047c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_04_26.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Despite successful efforts to rid most of the 63 countries affected by H5N1 bird flu in 2006 of the disease, H5N1 bird flu persists in 5 countries (Egypt, Indonesia, Bangladesh, Viet Nam and China) and therefore remains a global threat. The United Nations warns that although attention has recently shifted to H1N1 flu, H5N1 has caused the deaths of 300 people and 260 million birds, and has done nearly $20 billion in economic damage. “The progressive control of H5N1 in such countries remains an international priority,” Chief Veterinary Officer, Juan Lubroth, of the UN Food and Agriculture Organization warned. “As long as it is present in even one country, there is still a public health risk to be taken seriously.” The five countries still experiencing outbreaks have significant risk factors for the spread of zoonotic diseases, such as high numbers of free-ranging domestic poultry, industrial production along with live bird markets, and high densities of humans and animals. “We must stop hopping from one crisis situation to the next,” Dr. Lubroth said. “We have to do a better job of forecasting and monitoring the drivers that promote the emergence and spread of diseases, and institute improved risk management. We must be able to tackle problems at source before they become regional, continental or global threats.” +

+

+ The Field Museum and the University of Chicago have announced a new joint research program to study the evolution of species-switching parasites that cause diseases like bird flu, malaria, and AIDS. The program is called the Emerging Pathogens Project (EPP) and its goal is to provide in-depth information on animal pathogens that will provide important clues about how humans can combat emerging epidemics. In recent decades, human contact with animals has become more frequent because of increases in urban areas, global travel, and the loss of natural habitats. This has meant that some diseases jumped rapidly from animals to humans, giving medical researchers little time to learn about the pathogens and why they were able to transfer between species. The EPP is designed to fill this gap and provide information about pathogens useful to medical researchers in combating diseases. Scientists will draw DNA not only from animals collected for study but also from the viruses, bacteria, parasites and other pathogens affecting the animals. This will allow researchers to understand how diseases evolve and what might happen, genomically, as infectious organisms jump between animal species, as well as monitor any changes in the distribution and virulence of diseases that may threaten humans. EPP scientists will also collect animals from different ecological gradients in an effort to monitor and predict the effects of climate change on species-switching diseases. +

+

+ + H1N1 +
+ South Korea +
+ . On April 12 H5N1 flu broke out on two farms in Kyonggi-Do province. Altogether the farms housed 3,800 swine and 36 animals were infected. The infections were discovered during routine monitoring; the origin of the disease is unknown. Tests were conducted by the National Veterinary Research and Quarantine Service. Measures such as movement control inside the country and disinfection of the premises have been taken to prevent the spread of the disease. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . According to government officials, a 27-year-old man from Prey Veng province died on April 17 after contracting H5N1 bird flu. The man died of respiratory complications after experiencing a high fever. This is the 10th confirmed case of bird flu in a human since 2004 and the 8th death. “Avian Influenza H5N1 is still a threat to the health of Cambodians,” Minister of Health Mam Bunheng said in Wednesday’s statement. “I urge communities to be on the lookout for sick poultry and report poultry die-offs to the Ministry of Health or Ministry of Agriculture, Forestry and Fisheries hotlines, so that they can be investigated before people start to get sick.” +

+

+ + Indonesia + + . A 4-year-old patient with suspected bird flu tested negative for the disease by rapid testing, but M. Djamil hospital is waiting for the results of a test at the Center of Health Research and Development laboratory in Jakarta to confirm that the disease is not present. The patient has improved and is breathing normally. The child has been a patient at the hospital in Padang since April 20 and developed a fever along with difficulty breathing after contact with a dead chicken. The chicken has tested positive for H5N1 according to some reports. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_05_04.html b/data/flu-report-html/usgs_avian_flu_report_2010_05_04.html new file mode 100644 index 0000000..fdb0c40 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_05_04.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ According to a statement released on April 27, animal health experts, public health experts, the private sector and development partners associated with the Association of Southeast Asian Nations (ASEAN) have drafted a roadmap for the control of avian influenza to be submitted to the ASEAN sectoral bodies in late 2010. The roadmap is a plan to rid ASEAN member countries of highly pathogenic bird flu by 2020. Regional cooperation in control and eradication of the disease will be increased. The roadmap is divided into progressive phases based on the lessons learned in the broader context of animal disease control multi-sectoral cooperation for health, and One World, One Health frameworks. "The Roadmap would contribute to regional economic integration towards a single market and production base by 2015 with free flow of animal and livestock products as well as alleviating poverty and enhancing food security in the region," said the Deputy Secretary-General of ASEAN for ASEAN Economic Community, S. Pushpanathan. He added that the roadmap is also expected to strengthen the sustainable development of livestock; strengthen regional coordination on animal health and zoonoses; strengthen multi-sectoral cooperation on health related issues in line with the One World, One Health concept; and strengthen cooperation and partnership with development partners and donor agencies. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . Outbreaks of H5N1 bird flu on 12 farms (11 commercial and 1 backyard) in Bangladesh were reported to the OIE on April 25. The report covers outbreaks between March 9 and April 16 in the Dhaka, Rajshahi, and Chittagong districts. Altogether the farms contained 141,276 poultry. Over 78% were killed by the disease; the remaining birds were culled to prevent disease spread. The source of the outbreak is unknown, but preventive measures such as movement control inside the country and disinfection of infected premises have been taken. Samples from the birds tested positive for H5N1 at the Bangladesh Livestock Research Institute, the Central Disease Investigation Laboratory, and the Field Disease Investigation Laboratory. +

+

+ + Vietnam + + . Three new outbreaks were reported. An outbreak of H5N1 bird flu began April 13 on a poultry farm in Quang Ninh province. Of 900 birds housed on the farm, half died from the disease and the rest were culled. On April 22, H5N1 bird flu broke out on a local duck farm in Quang Tri province. According to the Department of Animal Health, the farm housed 1,500 ducks and 250 died from the disease. A third outbreak began April 24 on a farm in Quang Ngai province. Of 3,520 birds living on the farm, 150 died and the rest were culled. The origins of these outbreaks may have been the introduction of new live animals, illegal movement of animals, or fomites. Measures including the slaughter of infected animals, quarantine, movement control inside the country, and sterilization of affected areas have been taken to prevent the spread of the virus. There are also plans to begin screening and zoning. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A four-year-old girl from Riau province was first hospitalized from April 21-23 but was sent home and then rushed to the hospital again on April 24 because of a high fever and difficulty breathing. She was later transferred to Arfin Achmad hospital and placed in the bird flu isolation unit. The girl died on April 28 and tests returned positive for H5N1 bird flu on May 1. The girl had not been in direct contact with infected poultry. Three others are in intensive care at Arfin Achmad hospital for suspected bird flu, a 40-year-old woman, and two girls, 14 and 18 respectively.. They were all placed in isolation because of high fevers but are now in stable condition. +

+

+ An 11-year-old boy from West Sumatera province is being treated for suspected bird flu. Dozens of chickens died in his neighborhood, and tests by the Health and Livestock Services have confirmed H5N1 bird flu as the cause. During the outbreak, the boy was brought to Lubukbasung hospital with bird flu-like symptoms. “We observe his progress. If necessary, we will refer him to M Djamil hospital in Padang to get better service,” said the authority of Kecamtan Ampek Nagari, Welvizar. Control measures have been taken to prevent the spread of disease from the chickens such as burning and burying them. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_05_10.html b/data/flu-report-html/usgs_avian_flu_report_2010_05_10.html new file mode 100644 index 0000000..5216ead --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_05_10.html @@ -0,0 +1,2064 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, May 10 +

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+ + H5N1 in Poultry +
+ Cambodia +
+ . Highly pathogenic H5N1 broke out in a village in Prey Veng province on April 22. The village was home to 1167 chickens and ducks; 903 died and the rest were culled to prevent the spread of the disease. Samples tested by the National Veterinary Research Institute and Pasteur Institute of Cambodia were positive for H5N1. The National Veterinary Research Institute (NaVRI) of the Department of Animal Health and Production conducted an investigation in the village from 20 to 23 April 2010, but the results were inconclusive. Officials have implemented measures to control the disease, including movement control inside the country and disinfection of the infected premises. +

+

+ + Israel + + . Officials of the Agricultural Ministry are investigating the deaths of two chickens at a petting zoo in Kibbutz Ein Gedi to find out if they were caused by avian flu. Test results have been inconclusive, but the Ministry decided to cull the fowl on the kibbutz as a precaution. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A four-year-old girl from Riau province died on April 31 from H5N1. (NOTE: date corrected from last week’s report). +
+ Doctors are still awaiting test results for three suspected bird flu patients. They all had contact with dead poultry before developing symptoms and may have been infected from the same source. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_05_17.html b/data/flu-report-html/usgs_avian_flu_report_2010_05_17.html new file mode 100644 index 0000000..ed93a62 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_05_17.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, May 17 +

+

+ + H5N1 in Wild birds +
+ Mongolia +
+ . On May 3, an outbreak of H5N1 bird flu in 26 whooper swans and greylag geese began in Sukhbaatar province. All 26 birds died from the disease, but it is unknown how many other wild birds may have been exposed. The source of the outbreak is unknown, but control measures such as quarantine, screening, and zoning have been undertaken. Samples from the birds tested positive for bird flu at the State Central Veterinary Laboratory. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . Nano Sudiyo Wiradat, Head of Distanak Kabupaten Merangin reported that bird flu has been found in chickens in Jambi province for over a year. Recently the disease has also affected ducks. According to Nano, “We collected serum from duck populations, and several samples showed positive avian influenza.” He pointed out that ducks might survive and spread the disease, while chickens usually die within a few hours of infection. +

+

+ + Israel + + . Two emus from a small zoo in Kibbutz Ein Gediwere confirmed positive for H5N1 bird flu on May 6: one became ill on April 29 and died May 1, the other fell ill on May 2 and died May 4. As a precaution all other birds in the menagerie have been culled and buried on the spot, including 1 other emu, 2 quails, 20 peacocks, 70 finches, 20 cockatiels and 2 chickens. There were no commercial birds within a 10-kilometer radius of the outbreak. The source of the infection is unknown. Additional control measures applied include quarantine, movement control, screening, and zoning. There are plans to disinfect the premises in order to prevent the spread of the disease. Tests were conducted at the Southern Avian Diseases Laboratory and the Avian and Fishes Disease Division, Kimron Veterinary Institute. +

+

+ + West Bank + + . Several Palestinian media have reported that bird flu has been detected in the town of Bal’a near Tulkarm in the area of the West Bank under the control of the Palestinian Authorities. Bal’a is a major supplier of eggs and poultry products to the West bank and the poutry industry accounts for 40% of the local economy. Over 750,000 chickens have been ordered to be slaughtered in an effort to control the outbreak. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_05_28.html b/data/flu-report-html/usgs_avian_flu_report_2010_05_28.html new file mode 100644 index 0000000..bc9ad19 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_05_28.html @@ -0,0 +1,2096 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, May 28 +

+

+ + H5N1 in Poultry +
+ Egypt +
+ . A total of 34 cases of H5N1 bird flu were reported in 14 governorates between April 1 and May 15 (Behaira 1, Beni-Suef 1, Dakahlia 1, Fayoum 1, Gharbia 1, Helwan 1, Kafr-el-sheikh 5, Luxor 2, Menia 2, Menofia 7, Port Said 1, Qalioubiya 6, Sixth of October 3, and Suez 1). There were 8 commercial farms infected and 6 of them had been vaccinated against bird flu. +

+

+ + Bangladesh + + . Outbreaks of H5N1 bird flu were reported in Dhaka division during the month of April. The most recent began on April 17. +

+

+ + Indonesia + + . During March the Participatory Disease Surveillance and Response (PDSR) program conducted surveillance in 1,984 villages in 27 provinces. They found 1.5 villages newly infected with H5N1 per 1000 villages in the coverage area, but incidence varied greatly by province. The 4 provinces with the greatest number of infected villages were Kepulauan Bangka Belitung, Yogyakarta, Lampung, and Jambi. +

+

+ + Laos + + . An outbreak of H5N1 bird flu was reported on a farm in Xaythany district where 44 of 1,004 birds died. The rest of the birds were culled to prevent the spread of the disease. The birds began to show clinical signs on April 27. Presence of the virus was confirmed by testing at the National Animal Health Centre. Control measures such as movement control, screening, zoning, and disinfection of the premises have been undertaken. Active and passive surveillance are ongoing within a 5km radius of the farm. +

+

+ + Vietnam + + . Dak Lak province experienced an outbreak of H5N1 bird flu in ducks between May 8 and 13. Quang Ngai, Quang Tri and Dak Lak provinces are currently undergoing a 21 day monitoring period. +

+

+ + West Bank + + . At least 750,000 chickens infected with bird flu will be culled in the Tulkarem area. Palestinian police surrounded the area to ensure that the infected birds will not be transported out. Municipal council leader Bal’a Ahmad Mansur said, "Tension and anxiety are prevailing among the farmers, at least 40% of the town's economy is in chickens.” The avian flu outbreak came to light when a farmer noticed symptoms in some of his chicks and called officials in to test the birds. No human cases have been reported yet, but doctors are monitoring the local clinics and distributing information on symptoms to farming families. As preventative measures the farms will be disinfected, the birds will be buried, and a quarantine parameter of up to a 3km radius of the area will be put in place. +

+

+ + South Korea (low path) + + . Low pathogenic H7N7 bird flu broke out on May 13 at two farms in Cholla-Namdo province. The farms housed a total of 53,300 ducks, all of which were culled to prevent the spread of the disease. The outbreak was discovered when samples were taken by the Jeollanam-do Institute of Livestock and Veterinary Science as part of the avian influenza surveillance program and the samples tested positive for H7 bird flu at the National Veterinary Research and Quarantine Service on May 20, but the source of the outbreak is unknown. Officials are taking precautionary measures such as disinfection, quarantine, movement control inside the country, and zoning. +

+

+ + Netherlands (low path) + + . Low pathogenic H7 bird flu broke out on a farm in Noord-Brabant province that houses 28,000 chickens. The origin of the disease is unknown but all of the birds have been culled to prevent the spread of the disease. Other control measures such as screening and disinfection of the premises have been carried out. Tests were carried out by the Central Veterinary Institute. +

+

+ + UK (low path) + + . On May 18 British officials reported a suspected (H5) bird flu test result on a duck farm in Nottingshire. The possible positive sample was found through programs of active surveillance for notifiable avian influenza in domestic poultry. Further investigations were conducted based upon clinical examination and sampling for virological testing to rule out active infection. An investigation was completed with negative results and restrictions on the farm were lifted. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_06_07.html b/data/flu-report-html/usgs_avian_flu_report_2010_06_07.html new file mode 100644 index 0000000..95bff48 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_06_07.html @@ -0,0 +1,2075 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, June 7 +

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+ + H5N1 in Wild birds + +
+ Teams of scientists working for the Wildlife Conservation Society (WCS) have found that efforts to monitor bird flu in Southeast Asia have the added benefit of providing information on rare bird species. Recently a team working in Indonesia recorded new information about the distribution of the Nordmann's greenshank, an endangered shorebird species with a total global population of only 500-1,000. Their findings were published in BirdingASIA. "While our surveillance activities are mostly focused on testing birds for avian influenza as part of WCS's ongoing health investigations, we can also fill gaps in our understanding of the migration range of many bird species," said Joost Philippa, WCS field veterinarian and co-author on the paper. "Our research findings have applications for both health and conservation efforts alike." Monitoring has also provided valuable information about the presence of bird flu in Indonesia’s shore birds. About 15% of the 578 birds tested so far have been positive for low-pathogenic strains of avian influenza. These are the first findings to show that shore birds are a reservoir of bird flu viruses. +

+

+ + H5N1 in Poultry +
+ Ukraine +
+ . USAID and other groups carried out a public awareness campaign in the Ukraine, a poultry producing region at a crossroads of migratory bird routes, to motivate farmers to use safe handling practices for poultry and prevent the spread of bird flu. A company called Fauna produced a short film and TV series in 2009 to raise awareness of bird flu in Dzhankoy district, an area at high risk for outbreaks. The film showed how people dealt with the outbreak in 2006 by building wire coops to protect poultry from contact with wild birds and separate them from other domestic animals. Local expert, Mykola Arsievych, director of the Naturalist and Environmental Protection Center, also described how they protected the birds in the park by following biosafety rules and practices. The film was shown on a local channel that reaches 30,000 people and was shown to 15,000 school children. Fauna worked with veterinary and emergency services specialists and USAID partner International Relief & Development to produce the film. Lyudmila Yatsishina, the head of the Dzhankoy district veterinary department, said the film was “very timely indeed, as avian influenza is a real threat and it exists all the time.” +

+

+ + Italy/Netherlands (LPAI) + + . The Phillipines is temporarily banning the entry of birds and poultry from the city of Bergamo in northern Italy and the city of North Brabant in southern Netherlands due to reports that these cities are undergoing outbreaks of low-pathogenic bird flu. The ban was issued by the Department of Agriculture and is intended to prevent local poultry from coming into contact with low-pathogenic bird flu. The Phillipines, Brunei, and Singapore are the only countries in Southeast Asia designated as bird flu-free by the World Organization for Animal Health (OIE). The separate orders mandate the "Banning the importation of domestic and wild birds, including day-old chicks, eggs and semen from [indicated cities] and the immediate suspension of the processing, evaluation of the application and issuance of Veterinary Quarantine Clearance to import the mentioned commodities." They also ordered the halt and confiscation of all poultry and poultry products from Italy or the Netherlands at major ports. +

+

+ + H5N1 in Humans +
+ China +
+ . A 22-year-old pregnant woman from Ezhou, Hubei, has died, and has been diagnosed with H5N1 according to a posting on the Ministry of Health’s website. The Chinese Centre for Disease Control and Prevention said that the woman had contact with sick poultry before she fell ill, but an investigation by the Ministry of Agriculture has not found any signs of an epidemic of bird flu in the region. This is the 26th death and the 39th reported human case in China since 2003. +

+

+ + Indonesia + + . A patient is being treated for suspected bird flu at Soeradji Tirtonegoro hospital in Central Java. The 13-year-old patient was admitted to the hospital on May 26 and placed in isolation because the patient had direct contact with birds that tested positive for the disease. A blood sample was sent to University Laboratory and Ministry of Health and the patient was treated with Tamiflu and infusion support. Dozens of birds in the patient’s home town have died since May 24 and testing by the Agriculture and Health services confirmed H5N1 bird flu in the dead birds. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_06_11.html b/data/flu-report-html/usgs_avian_flu_report_2010_06_11.html new file mode 100644 index 0000000..075ab0a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_06_11.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, June 11 +

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+ + H5N1 in Wild birds +
+ China +
+ . According to a statement released June 9 by the Information Office of the Ministry of Agriculture, the carcasses of wild birds from Nagqu Prefecture in Tibet tested positive for H5N1 bird flu at the National Bird Flu Reference Laboratory. Soon after learning of the results, the Ministry of Agriculture sent experts to help the local Department of Forestry with preventative measures such as monitoring wild birds in the prefecture and informing local farmers and herdsmen of related measures. A total of 160 wild bird carcasses including 141 brown-headed gulls, 27 bar-headed geese, 1 chough and 1 widgeon had appeared in the area from mid-May to May 25. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_06_29.html b/data/flu-report-html/usgs_avian_flu_report_2010_06_29.html new file mode 100644 index 0000000..ba54c2f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_06_29.html @@ -0,0 +1,2064 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild Birds +
+ Russia +
+ . A mortality event involving 367 wild birds found dead on a lake in Ubsu Nur, in the Republic of Tuva, was reported to the World Organization for Animal Health (OIE). The birds were found on Jun 5, and the All Russian Research Institute for Animal Health (FGI-ARRIAH) has detected H5N1 in the samples. The affected species included Great Crested Grebe ( Podiceps cristatus ), Goosander ( Mergus merganser ), Grey Heron ( Ardea cinerea ), Gadwall ( Anas strepera ), Eurasian Spoonbill ( Platalea leucorodi a ). +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . An outbreak of H5N1 bird flu began June 17 in Rajshahi division, killing 332 birds on a farm of 5,621. The rest were culled as a preventative measure. Samples tested positive for H5N1 at the Bangladesh Livestock Research Institute and the Field Disease Investigation Laboratory in Joypurhat. The source of the infection is unknown, but measures such as movement control inside the country and disinfection of the premises have been undertaken to prevent the spread of the disease. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 4-year-old boy from West Kalimantan province was hospitalized at Soedarso regional hospital in Pontianak with suspected bird flu. According to the Head of Health Service of Pontianak, Multi Juto Batharendo, “[The] patient is under isolation. Throat swab has been sent to Laboratory of Health Research and Development (Litbangkes). Epidemiology investigation didn’t show other similar case.” Many birds have died recently in the area and Soedarso regional hospital is the province’s bird flu referral hospital, so they have been preparing their facilities in anticipation of bird flu patients. In the meantime, the Health Service has enacted preventive measures such as epidemiological investigation, public socialization and distribution of Tamiflu to public health centers. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_07_02.html b/data/flu-report-html/usgs_avian_flu_report_2010_07_02.html new file mode 100644 index 0000000..24c6caa --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_07_02.html @@ -0,0 +1,2076 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds + +
+ Researchers from Bologna University, the Istituto Superiore di Sanità, Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia, and St. Jude Children’s Research Hospital have discovered a new method of avian influenza transmission. The team, led by Mauro Delogu a virologist from the veterinary faculty of Bologna University, recently published their findings in PLoS One (citation below). They found that preen oil gland secretions, which aquatic birds use to waterproof their feathers, concentrates avian influenza viruses (AIVs) from the water onto the birds’ bodies. The virus “sticks” to the birds’ feathers when they encounter water contaminated by AIVs and then the birds spread the virus by preening themselves and other birds. According to Delogu, this discovery has important implications for surveillance of bird flu because current methods could fail to detect virus on feathers. They suggest that future surveillance programs include sampling methods that detect AIVs on birds’ bodies. The results of the study suggest that a preened body may be the common factor between different taxonomic groups of aquatic birds that are susceptible to bird flu. Finally, the discovery aids in understanding the circulation and persistence of H5N1 in Eurasia. +

+

+ Scientists from the University of Wisconsin, the Wisconsin Cooperative Wildlife Research Unit, and the National Wildlife Health Center have developed a Susceptible-Exposed-Infectious-Recovered (SEIR) model for both low pathogenic (LPAI) and highly pathogenic (HPAI) bird flu. Led by Viviane Hénaux, they used published laboratory challenged studies to estimate epidemiological parameters such as rate of infection, latency period, recovery rates, and mortality rates. They found that HPAI has a shorter infectious period than LPAI, which may explain why HPAI has been harder to detect during surveillance. The model predicted a rapid LPAI epidemic curve, with a median duration of infection of 50–60 days and no fatalities. In contrast, HPAI dynamics had lower prevalence and higher mortality, especially in young birds. They suggest that surveillance for HPAI should be increased in post-breeding areas because the presence of young birds is predicted to cause higher HPAI prevalence. This information will help to refine predictions of AI risk and spread, improve surveillance for HPAI in wild birds, and develop disease control strategies to reduce potential transmission to domestic birds and/or humans. The results of the study were published in PLoS One (citation below). +

+

+ + Russia + + . A list of species for the mortality event reported last week involving 367 birds found dead on a lake in Ubsu Nur, in the Republic of Tuva has been released. The affected species included great crested grebe (Podiceps cristatus), goosander (Mergus merganser), grey heron (Ardea cinerea), gadwall (Anas strepera), Eurasian spoonbill (Platalea leucorodia). +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . The Department of Animal Health reported on June 28 that bird flu had broken out on a local farm in Thai Nguyen province. Local authorities have culled the entire flock of over 530 infected ducks, sterilized affected areas, and placed restraints on the movement of poultry and poultry products in order to prevent the spread of the disease. This was the first bird flu outbreak in the province since early this year. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 27-year-old resident of Boyolali in Central Java province died from suspected H5N1 bird flu. The patient was treated first in Pandan Arang Boyolali regional public hospital, but was transferred to Dr. Moewardi hospital as a bird flu suspect. He died from a respiratory infection during treatment. Hundreds of chickens had recently died in his area, but officials have encountered difficulty in diagnosing the disease as no dead chickens were left to sample. So far there have been no further signs of bird flu in humans, but monitoring continues. +
+ Four people from Pontianak in West Kalimantan province are being treated for suspected bird flu. The patients all developed fever and flu symptoms after chickens in their area suddenly died. They are being treated in Dr. Soedarso hospital. The four patients (two ten-year olds, a 15-year-old, and a 9-year-old) have been treated with Tamiflu and remain in isolation. Samples from the patients have been sent to the research and development laboratory of the Ministry of Health (Litbangkes) in Jakarta for bird flu confirmation. Three of the patients are from the same neighborhood, but one is from a different area of the city. A four-year-old who had been treated for suspected bird flu at the same hospital tested negative for bird flu, recovered from flu symptoms, and has been discharged. +
+ A 34-year-old woman from Jakarta died from H5N1 bird flu on June 1. The woman became ill with a fever, coughing, difficulty breathing, nausea, and muscle pain on May 25. She visited a private clinic on May 27 and was treated in a private hospital in Tangerang. During her stay her condition worsened and she was referred to Tangerang regional hospital on June 1, but died the same day. Bird flu was confirmed as the cause of death on June 4. The patient had a hobby of growing ornamental plants in her yard, which is a risk factor for infection. She had also visited her parents-in-law in Tangerang city, a bird flu endemic area. No other bird flu-like illness has been reported among the patient’s contacts. This is the 166th case of bird flu in Indonesia and 137th death since 2005. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_07_12.html b/data/flu-report-html/usgs_avian_flu_report_2010_07_12.html new file mode 100644 index 0000000..0e054e6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_07_12.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jul 12, 2010 +

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+ News Update, July 12 +

+

+ + H5N1 in Wild birds +
+ China +
+ . An outbreak of H5N1 bird flu began on May 9 in the Shuanghu district of Tibet and was resolved on May 25. The outbreak killed 170 wild birds, including 141 brown-headed gulls (Larus brunnicephalus), 27 bar-headed geese (Anser indicus), one red-billed chough (Pyrrhocorax pyrrhocorax) and one Eurasian wigeon (Anas penelope). H5N1 was confirmed by the National Avian Influenza Reference Laboratory on June 3, but the origin of the outbreak is unknown. Screening of wild bird populations has been implemented to prevent the spread of the disease. + ( + + more... + + ) +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_07_16.html b/data/flu-report-html/usgs_avian_flu_report_2010_07_16.html new file mode 100644 index 0000000..88da96d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_07_16.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 16, 2010 +

+
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+ News Update, July 16 +

+

+ + H5N1 in Wild birds +
+ China +
+ . An outbreak of H5N1 bird flu began on May 9 in the Shuanghu district of Tibet and was resolved on May 25. The outbreak killed 170 wild birds, including 141 brown-headed gulls (Larus brunnicephalus), 27 bar-headed geese (Anser indicus), one red-billed chough (Pyrrhocorax pyrrhocorax) and one Eurasian wigeon (Anas penelope). H5N1 was confirmed by the National Avian Influenza Reference Laboratory on June 3, but the origin of the outbreak is unknown. Screening of wild bird populations has been implemented to prevent the spread of the disease. + ( + + more... + + ) +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_07_23.html b/data/flu-report-html/usgs_avian_flu_report_2010_07_23.html new file mode 100644 index 0000000..a55adbe --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_07_23.html @@ -0,0 +1,2056 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 23, 2010 +

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+ News Update, July 23 +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . Thousands of chickens have died in the past three weeks in three villages in Bengkulu province. Inspection by animal infectious disease control personnel on June 20 confirmed H5N1 as the cause of death. Poultry in the area were immediately quarantined in another location to prevent infection. Officials have asked communities to watch for symptoms of bird flu, to burn or bury any birds that are ill, and to report any incidents immediately to the local government. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . Tests at the Health Ministry’s laboratory in Jakarta on July 16 confirmed bird flu as the cause of death for a 13-year-old girl. The girl developed symptoms on Jun 14th and died on June 24th. The girl was from Sukuharjo district and had handled a dead chicken before developing influenza-like symptoms. + ( + + more... + + ) +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_07_30.html b/data/flu-report-html/usgs_avian_flu_report_2010_07_30.html new file mode 100644 index 0000000..34be7e4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_07_30.html @@ -0,0 +1,2080 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 30, 2010 +

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+ News Update, July 30 +

+

+ French experts say that the H5N1 bird flu situation has not improved much since the virus began to spread in 2003 and that many cases probably go unreported. Their findings were published in Eurosurveillance (see citation below). Although the virus does not have the ability to spread easily from human to human, the regular reintroduction of the virus by wild birds into countries that have brought former outbreaks under control, underscores the importance of adequate surveillance and response capacities. They believe that the World Health Organization’s (WHO) human case count of 501 cases and 297 deaths likely falls short of the true number of cases worldwide. In Indonesia the case fatality rate (CFR) of highly pathogenic bird flu is 88% and most of the cases reported in the past year have been from the island of Java, which suggests that access to diagnosis is uneven and severe cases are overrepresented in the official count. In Egypt the CFR is lower, which is attributed to better access to diagnosis and care, but suspected human cases in remote locations may go unreported. The experts noted that there have been outbreaks of H5N1 in birds in 63 countries since 2003 and 12 countries have had outbreaks so far this year. Many other countries, especially in sub-Saharan Africa, suspect transmission in backyard flocks but lack the resources to document them. +

+

+ In discussing the patterns of human cases, the report observes that the numbers have generally trended downward over the past 6 years and that most cases have occurred in the months from November to April, although Indonesia has cases throughout the year. In recent years, the number of cases has fallen in Asia and grown in the Near East, mainly Egypt. The latter accounted for 66 of 149 cases (44%) from Jan 1, 2008, to Jul 1, 2010. There have been 40 clusters of human cases, involving more than 100 illnesses, since the end of 2003. Most of these clusters were caused by common exposure to sick poultry, but the investigators believe that limited human-to-human transmission occurred in some of the clusters. Some of the clusters involved families, which suggests that genetic susceptibility plays a role in transmission. The virus still has the potential to spark a human pandemic, the researchers state. They point out that, unlike in 2003 and 2004, poultry outbreaks and human cases now are occurring in some of the most densely populated areas in the world, which may increase the risk of transmission from birds to humans and make it harder to contain the virus if it starts spreading among humans. +

+

+ Governments could save money by stepping up the effort to prevent and control animal diseases, many of which are transmissible to humans. The Food and Agricultural Organization (FAO) of the United Nations makes the plea for investment as land-use changes, climate change and increased international trade raise the threat of various diseases, such as avian influenza, foot-and-mouth, Rift Valley fever and rabies, spreading globally. They warned that new strains of influenza viruses are already emerging globally. FAO chief veterinarian Juan Lubroth said: “We are expecting the costs to human, animal and plant health of these pathogens, and their overall economic costs, to rise substantially over the next decade. This is not science fiction. The threats are very real. Deadly and economically devastating animal epidemics have existed throughout history, but there is no doubt that more pathogens are emerging – and spreading. The good news is, with the right policies, they can be better detected and contained.” The FAO says that the increased threat of animal diseases is linked to dramatic production increases on farms in recent years. Developing countries face the biggest threat from transboundary animal diseases, which pose direct threats to food security, nutrition and the economies of those rural areas dependent on livestock production. Food waste that draws scavengers to human populations and farms near natural habitats increases the threat of disease transmission from wild animals to domestic animals and humans. FAO has asked nations globally to invest in animal health control and prevention over the next five years through a new One Health initiative. It targets action at those regions that carry the greatest risks and which are vulnerable to the emergence and spread of infectious diseases. The money would go to improve surveillance and response, identify problem areas and strengthen state veterinary services to prepare them for disease outbreaks. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . The health department detected 300 cases of H5N1 bird-flu infected poultry from January to June of this year. The Institute of Epidemiology, Disease Control and Research (IEDCR) under the Health Ministry announced that it has documented a total of 298 cases of bird-flu during the period, raising the overall figure to 1,183. +

+

+ + China + + . According to a Chinese source, the World Trade Organization (WTO) has ruled in favor of China in its dispute with the United States over an effective U.S. ban on imports of cooked chicken from China. The dispute had its origins in health concerns following outbreaks of bird flu in China. A spending bill was passed in the U.S. Congress that prevented the authorities from taking any measures to process imports of Chinese chicken. China said that the measure was discriminatory because their chicken met international health standards. The U.S. ended the ban when the WTO panel was set up in July 2009, but the ban has remained effectively in place while the U.S. Department of Agriculture is reviewing Chinese food safety rules before deciding whether it can start inspections at Chinese processing plants. China is now the third biggest market for U.S. farm goods, but China has imposed duties on U.S. chicken products that it said were being dumped in the Chinese market or unfairly subsidized. The WTO issued a ruling in the dispute to the two parties on Monday, but it remains confidential until it is published in a few months time. There was no official comment from Chinese or U.S. authorities. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . A 20-year-old woman from Qalyubia governorate hospitalized in critical condition in Cairo has been confirmed to have H5N1 bird flu. According to Health Ministry spokesman Abdel Rahman Shahin, the woman was admitted to the hospital on July 21 with fever and difficulty breathing. She is undergoing treatment with oseltamivir and is being monitored carefully. Reports have not said whether the patient had contact with sick or infected birds. If the World Health Organization (WHO) confirms the woman's infection, she will be listed as Egypt's 110th H5N1 case-patient. Earlier this month, the Egyptian government banned the sale of live poultry in an effort to prevent the spread of H5N1. The pace of detections of the virus has slowed since May, with only 11 reports since the beginning of June. In about half of the outbreaks, the virus was detected during surveillance activities; one occurred at a poultry farm, and the rest involved household birds. +

+

+ + Indonesia + + . A 5-year-old from West Kalimantan died on July 24 from suspected H5N1 bird flu infection. The girl had a high fever for a week before being admitted to a public health center in Toho. Her illness continued and she was transferred to Rubini regional hospital and later referred to Santo Antonius hospital. After a day at Santo Antonius hospital she was referred to Soedarso hospital and isolated as a ‘bird flu suspect’ patient. The hospital collected a blood sample to test for H5N1. Within the last two months, six children have been treated as ‘bird flu suspect’ patients in Soedarso hospital. All of them tested negative. It is not known whether the patient had contact with birds; although the family does not raise birds, there have been many chicken deaths in their neighborhood. +

+

+ A 24-year-old man from West Sumatra died of suspected H5N1 bird flu on July 28. The patient began to show symptoms such as high fever and chills on July 22. He was taken to a local health worker who recommended that he be taken to Sawah Lunto hospital. The medical team at Sawah Lunto hospital suspected bird flu and transferred him to M Djamil hospital on July 24, where he was cared for in a special unit until his death. The patient had had contact with chickens. + ( + + more... + + ) +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_08_06.html b/data/flu-report-html/usgs_avian_flu_report_2010_08_06.html new file mode 100644 index 0000000..d99261d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_08_06.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 06, 2010 +

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+ News Update, August 6 +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . The local husbandry and fishery administration of East Jakarta has culled 524 chickens, 345 ducks, and 440 pigeons to prevent the spread of bird flu. In addition to culling the birds, officers dismantle and burn poultry cages that are within 25 meters (82 feet) of residential areas in accordance with a bylaw that prohibits raising poultry near residences. Officers also cull birds that are roaming in residential areas. +

+

+ On July 27 and 28, thousands of chickens died suddenly from H5N1 bird flu in two villages in South Sulawesi province. The Livestock Service immediately culled all of the surviving chickens, disinfected the area, and restricted the traffic of livestock and livestock products in the area to prevent the spread of the disease. They also supplied masks, protective clothing, disinfectant and veterinarians to the locations. People were asked to report any sudden death in birds to bird flu centers that have been built in each sub-district. +

+

+ In Lampung province, about 25 chickens that had died suddenly tested positive for H5N1 bird flu. The head of the livestock division of the Agriculture and Livestock Service of Kabupaten Pesawaran, Emi Yeni Erniati, said that Livestock Services and Participatory Disease Surveillance and Response (PDSR) had taken care of this incident. People had been disposing of dead chickens in rivers, but during flooding the carcasses flowed back to the residences and spread the disease. Nevertheless, the number of bird flu cases in the area has decreased since last month. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 34-year-old woman from Banten province died from H5N1 bird flu on July 7. The patient developed symptoms on July 2 and was hospitalized on July 4. H5N1 was confirmed by laboratory testing. + ( + + more... + + ) +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_08_16.html b/data/flu-report-html/usgs_avian_flu_report_2010_08_16.html new file mode 100644 index 0000000..05e51dc --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_08_16.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 16, 2010 +

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+ News Update, August 16 +

+

+ On August 11, 2010, the World Health Organization announced that the H1N1 flu pandemic is over. Flu activity worldwide has returned to typical seasonal patterns and furthermore, many people have become immune to the virus. "The world is no longer in phase 6 of influenza pandemic alert," said WHO Director-General Margaret Chan in a press briefing from Hong Kong. "We are now moving into the post-pandemic period. The H1N1 virus has largely run its course." But she cautioned that the virus has not gone away and bears continued watching, "We expect the H1N1 virus to take on the behavior of a seasonal influenza virus and continue to circulate for some years to come." The pandemic had been at a full phase 6 since June 11, 2009. In additional to infecting people in 214 countries and causing at least 18,500 deaths, during the pandemic there were 97 reports of H1N1 flu in animals, most of them domestic. The first report was from a farm in Alberta, Canada, in May 2009, soon after the outbreak was first reported in people in Mexico. A total of 21 countries have since reported infections in domestic animals (mainly pigs) and companion animals (cats, dogs and ferrets). +

+

+ A study led by Yoshihiro Kawaoka of the University of Tokyo suggests that a new deadly flu pandemic could result if genes from the 2009 pandemic H1N1 virus and H5N1 bird flu were to mix. The researchers found that the two viruses are highly compatible. While the deadly bird flu virus does not easily multiply in the human body, the new, less pathogenic, 2009 H1N1 flu virus does. The researchers said a combination of the two could create pandemic H5N1 viruses. "Pigs can contract both the highly pathogenic flu and the new swine-origin flu, so there is a possibility gene reassortment could occur in pigs," Kawaoka said. "Research to quickly detect the emergence of a new virus is indispensable." The team infected tissue culture cells with both viruses and created 16 types of viruses containing different combination of genes from the two original viruses. When these reassortant viruses were transmitted to human lung cells, they generally multiplied well. Some even propagated much faster than the original viruses. The group reported its findings in the Aug. 4 online edition of the Journal of Virology (see the citation below under CP Octaviani). +

+

+ + H5N1 in Wild Birds +
+ Russian Federation +
+ . A total of 367 wild birds were found dead on June 5 on Ubsu-Nur Lake, Republic of Tuva, near the border of Mongolia. Affected species included great crested grebe (Podiceps cristatus), goosander (Mergus merganser), grey heron (Ardea cinerea), gadwall (Anas strepera) and Eurasian spoonbill (Platalea leucorodia). Samples tested positive for H5N1 by PCR. +

+

+ + H5N1 in Poultry +
+ Egypt +
+ . There were a total of eight cases of H5N1 bird flu in five governorates during June: 1 in Dakahlia, 2 in Fayoum, 1 in Menoufia, 1 in Qalioubiya, and 3 in Sixth of October. Most of the outbreaks were in household poultry; one occurred on a commercial farm in Dakahlia governorate. +

+

+ + Bangladesh + + . On June 19 an outbreak of H5N1 bird flu in Narayanganj District was reported. +

+

+ + Indonesia + + . The Participatory Disease Surveillance & Response (PDSR) programme covers 71,033 villages in 84% of Indonesia’s 448 districts and municipalities in 29 of its 33 provinces, using a network of 33 Local Disease Control Centres. During May 2010, PDSR conducted surveillance in 1,978 villages (2.8%). The overall H5N1 bird flu incidence was 0.6 infected villages per 1,000 villages under surveillance. The four provinces with the highest incidence values were Yogyakarta, Sumatera Barat, Kalimantan Timur, and Lampung. Some newly infected villages were found during May with 14 in Sumatra, 29 in Java, and 2 in Kalimantan. +

+

+ + Vietnam + + . Quang Nam and Thai Nguyen provinces experienced outbreaks of H5N1 bird flu in June. The most recent outbreak was on July 18 in chickens and Muscovy ducks in Gia Lai province. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . An outbreak of H5N1 bird flu that killed hundreds of chickens in Bengkulu province may have spread to humans. A 19-year-old was admitted to M Yunus regional hospital with suspected bird flu on August 6. The patient had developed a fever and sore throat after burying chickens days before. “We’re treating a bird flu suspect patient in an isolation unit, but we’re still not sure whether the patient has bird flu or not,” director of M Yunus hospital, Dr. Zulman Zuri confirmed. “For now we don’t suspect bird flu infection because patient is getting better after being treated here. We’re collecting throat swab every day for three days and send it to NHIRD, Ministry of Health laboratory. We have done chest x-ray too, but still waiting for the laboratory result,” added Zulman. The hospital has prepared two special rooms for bird flu patients that are guarded and equipped for the safety of patients and health workers. + ( + + more... + + ) +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_08_18.html b/data/flu-report-html/usgs_avian_flu_report_2010_08_18.html new file mode 100644 index 0000000..053970a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_08_18.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 18, 2010 +

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+ News Update, August 16 +

+

+ On August 11, 2010, the World Health Organization announced that the H1N1 flu pandemic is over. Flu activity worldwide has returned to typical seasonal patterns and furthermore, many people have become immune to the virus. "The world is no longer in phase 6 of influenza pandemic alert," said WHO Director-General Margaret Chan in a press briefing from Hong Kong. "We are now moving into the post-pandemic period. The H1N1 virus has largely run its course." But she cautioned that the virus has not gone away and bears continued watching, "We expect the H1N1 virus to take on the behavior of a seasonal influenza virus and continue to circulate for some years to come." The pandemic had been at a full phase 6 since June 11, 2009. In additional to infecting people in 214 countries and causing at least 18,500 deaths, during the pandemic there were 97 reports of H1N1 flu in animals, most of them domestic. The first report was from a farm in Alberta, Canada, in May 2009, soon after the outbreak was first reported in people in Mexico. A total of 21 countries have since reported infections in domestic animals (mainly pigs) and companion animals (cats, dogs and ferrets). +

+

+ A study led by Yoshihiro Kawaoka of the University of Tokyo suggests that a new deadly flu pandemic could result if genes from the 2009 pandemic H1N1 virus and H5N1 bird flu were to mix. The researchers found that the two viruses are highly compatible. While the deadly bird flu virus does not easily multiply in the human body, the new, less pathogenic, 2009 H1N1 flu virus does. The researchers said a combination of the two could create pandemic H5N1 viruses. "Pigs can contract both the highly pathogenic flu and the new swine-origin flu, so there is a possibility gene reassortment could occur in pigs," Kawaoka said. "Research to quickly detect the emergence of a new virus is indispensable." The team infected tissue culture cells with both viruses and created 16 types of viruses containing different combination of genes from the two original viruses. When these reassortant viruses were transmitted to human lung cells, they generally multiplied well. Some even propagated much faster than the original viruses. The group reported its findings in the Aug. 4 online edition of the Journal of Virology (see the citation below under CP Octaviani). +

+

+ + H5N1 in Wild Birds +
+ Russian Federation +
+ . A total of 367 wild birds were found dead on June 5 on Ubsu-Nur Lake, Republic of Tuva, near the border of Mongolia. Affected species included great crested grebe (Podiceps cristatus), goosander (Mergus merganser), grey heron (Ardea cinerea), gadwall (Anas strepera) and Eurasian spoonbill (Platalea leucorodia). Samples tested positive for H5N1 by PCR. +

+

+ + H5N1 in Poultry +
+ Egypt +
+ . There were a total of eight cases of H5N1 bird flu in five governorates during June: 1 in Dakahlia, 2 in Fayoum, 1 in Menoufia, 1 in Qalioubiya, and 3 in Sixth of October. Most of the outbreaks were in household poultry; one occurred on a commercial farm in Dakahlia governorate. +

+

+ + Bangladesh + + . On June 19 an outbreak of H5N1 bird flu in Narayanganj District was reported. +

+

+ + Indonesia + + . The Participatory Disease Surveillance & Response (PDSR) programme covers 71,033 villages in 84% of Indonesia’s 448 districts and municipalities in 29 of its 33 provinces, using a network of 33 Local Disease Control Centres. During May 2010, PDSR conducted surveillance in 1,978 villages (2.8%). The overall H5N1 bird flu incidence was 0.6 infected villages per 1,000 villages under surveillance. The four provinces with the highest incidence values were Yogyakarta, Sumatera Barat, Kalimantan Timur, and Lampung. Some newly infected villages were found during May with 14 in Sumatra, 29 in Java, and 2 in Kalimantan. +

+

+ + Vietnam + + . Quang Nam and Thai Nguyen provinces experienced outbreaks of H5N1 bird flu in June. The most recent outbreak was on July 18 in chickens and Muscovy ducks in Gia Lai province. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . An outbreak of H5N1 bird flu that killed hundreds of chickens in Bengkulu province may have spread to humans. A 19-year-old was admitted to M Yunus regional hospital with suspected bird flu on August 6. The patient had developed a fever and sore throat after burying chickens days before. “We’re treating a bird flu suspect patient in an isolation unit, but we’re still not sure whether the patient has bird flu or not,” director of M Yunus hospital, Dr. Zulman Zuri confirmed. “For now we don’t suspect bird flu infection because patient is getting better after being treated here. We’re collecting throat swab every day for three days and send it to NHIRD, Ministry of Health laboratory. We have done chest x-ray too, but still waiting for the laboratory result,” added Zulman. The hospital has prepared two special rooms for bird flu patients that are guarded and equipped for the safety of patients and health workers. + ( + + more... + + ) +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_08_20.html b/data/flu-report-html/usgs_avian_flu_report_2010_08_20.html new file mode 100644 index 0000000..5787350 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_08_20.html @@ -0,0 +1,2071 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, August 20 +

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+ + H5N1 in Poultry +
+ Indonesia +
+ . The head of Jakarta’s Agriculture, Maritime and Animal Husbandry Agency, Jawilhija, said “Seventy percent of samples taken from the faeces of thousands of birds were avian flu positive, even though the birds appeared healthy.” She added that meat from the birds did not pose a danger to humans as long as it was cooked well. Last year there were 44 human cases of bird flu in Jakarta, but so far there have only been 2 cases this year. Nevertheless, officials are wary of a future outbreak. A new bylaw will require owners of pet birds to certify their animals and restrict poultry slaughterhouses to six areas on the periphery of the city. +

+

+ In West Kalimantan province, the Agriculture, Livestock and Fishery Service confirmed an outbreak of H5N1. They examined 21 birds; 8 of which tested positive for bird flu. The head of the Agriculture, Livestock and Fishery Service of Sintang, Arbudin said, “In June we dispatched a team as soon as we received reports, but the test was negative. Also for July, but during August, again we received reports of chicken deaths and did rapid tests in two suspected areas.” Since H5N1 was confirmed, officials enacted control and prevention measures such as depopulating birds around suspected areas, mapping outbreak points, and inspecting chicken transport vehicles. In Bengkulu province, 33 villages are undergoing bird flu outbreaks. Officials have culled around 4,500 chickens and ducks in order to prevent the disease from spreading. +

+

+ + Vietnam + + . An outbreak of H5N1 bird flu in poultry in Gia Lai province began on July 18. Out of 1900 birds in Ia Hrung village, 760 were ill and 400 died. The remaining birds were culled to prevent the spread of the disease. The source of the outbreak may have been the introduction of new live animals, illegal movement of animals, or contaminated objects. Preventative measures such as quarantine, movement control, disinfection of the premises, and modified stamping out have been put in place. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health of Egypt has announced that a 2-year-old girl from Cairo is ill from H5N1 bird flu. She developed symptoms on 2 August, was hospitalized on the same day and received oseltamivir treatment. She currently remains under treatment in the hospital. Investigations into the source of illness suggest that the patient was exposed to sick and dead poultry. The Egyptian Central Public Health Laboratories, a National Influenza Center of the WHO Global Influenza Surveillance Network (GISN), confirmed the case. This is the 111th human case of bird flu to be confirmed by laboratory testing in Egypt. +

+

+ + Indonesia + + . Two bird flu suspect patients were reported in Bengkulu province. One of them is still under intensive treatment in M Yunus hospital. A 14-year-old girl from Central Java province died from H5N1 bird flu. The cause of death was confirmed by district health officials on August 12. + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_08_26.html b/data/flu-report-html/usgs_avian_flu_report_2010_08_26.html new file mode 100644 index 0000000..cbcd08c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_08_26.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Aug 26, 2010 +

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+ News Update, August 26 +

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+ + H5N1 in Poultry + +
+ Scientists from the U.S. Department of Agriculture (USDA) reported at the 240th National Meeting of the American Chemical Society on August 24 on a new study, in which mice learned to detect viruses in feces by smell. According to USDA scientist Bruce A. Kimball, "Based on our results, we believe dogs, as well as mice, could be trained to identify a variety of diseases and health conditions.” The researchers anticipate that their findings could lead to the use of trained disease-detector dogs to screen feces, soil, and other samples as an early-warning system for the emergence and spread of flu viruses. They also hope to identify the specific odor molecules that the mice sense and develop detection instruments for use in the field and in the laboratory. +

+

+ + Indonesia + + . On August 25, H5N1 bird flu infected 60 chickens on a farm in East Java province. The owner reported that he had noticed the death of some chickens awhile ago, but had put off reporting the incident to the Livestock Service. After more chickens died, he reported the case and tests showed that the chickens were infected with bird flu. The Livestock Service has disinfected the area to prevent the spread of the disease. +

+

+ + Vietnam + + . There have been six outbreaks of H5N1 bird flu in Vietnam since May 5. Two of the outbreaks occurred in Thai Nguyen, two in Dak Lak, one in Quang Nam, and one in Gia Lai. All except for the one in Gia Lai have been resolved. A total of 6,057 birds have been killed by the disease and 4,923 have been culled as a preventative measure. The source of the outbreaks may have been the introduction of new live animals, illegal movement of animals, or contaminated objects. Preventative measures such as quarantine, movement control, disinfection of the premises, and modified stamping out have been put in place. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . On August 25, the Health Ministry announced a new case of H5N1 bird flu. The patient is a woman from Qalyubiya governorate. She contracted the virus through contact with infected poultry and is being treated for high fever and breathing difficulty at Cairo hospital. She is in critical condition even after treatment with Tamiflu. This is the 122nd confirmed human case of H5N1 in Egypt. + ( + + more... + + ) +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_09_09.html b/data/flu-report-html/usgs_avian_flu_report_2010_09_09.html new file mode 100644 index 0000000..ed3814a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_09_09.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, September 9 +

+

+ According to Alan Hawley, one of Wales’ leading experts on health and disaster management, climate change and international food scarcity has the potential to spread social and economic chaos across the globe, more so than bird flu. His comments follow the Assembly Government’s decision to reduce the surveillance of live wild birds for avian influenza and focus on testing dead birds. He approved of the government’s decision, though he said the threat of avian flu mutating into a form which could be passed between people “absolutely” remained on the radar. He said: “The one we worry about is the avian epidemic where it moves from birds to the human species. I think that’s likely to happen, just being dispassionate about it. It will be bad enough to give us a jolt, but the technology and the modern public health techniques will allow us to cope with it.” The government based its decision on the opinion of many European experts that testing wild birds is of limited value in detecting H5N1 bird flu. +

+

+ Elsewhere, experts are warning that, without stringent surveillance, H5N1 bird flu could re-emerge in Thailand. They worry that migratory birds or pet dogs and cats might transmit the disease to humans. Pilaipan Puthavathana, a virologist at Siriraj Hospital's Department of Microbiology, Mahidol University, said "Nobody dares to say the virus has been wiped out here as long as our neighboring countries continue to report bird flu cases." Thailand has not had a bird flu case in humans since July 2006. A total of 27 cases were confirmed with 17 deaths reported during a series of bird flu outbreaks from 2004 to 2006. She pointed out that seagulls migrating from provinces in China that have recently experienced bird flu outbreaks could bring the disease back to Thailand. The virologist said disease surveillance among pet dogs and cats was essential if bird flu virus re-emerged in the future. Studies have found H5N1 antigens in cats and dogs, showing that these animals could survive bird flu but transmit the virus to their owners. +

+

+ + Finland (H1N1) + + . An outbreak of H1N1 influenza began on August 23 on a fattening farm in Länsi- ja Sisä-Suomi. Of the farm’s 1,500 pigs, 150 showed symptoms such as sneezing, coughing, fever, and loss of appetite. Testing by the Finnish Food Safety Authority showed that H1N1 was the cause of illness. Officials are controlling the movement of swine within the country and screening animals to prevent the spread of the disease. It is not known how the pigs became infected with the disease. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . Starting on August 27, many chickens in a village in Aceh province died suddenly. Further investigation by Participatory Disease Surveillance and Response (PDSR), Agriculture of Livestock Service West Aceh has confirmed that those chickens died from H5N1 bird flu. The dead chickens have been burned and buried and the remaining chickens have been culled to prevent the spread of the disease. +

+

+ + H5N1 in Humans + +
+ Researchers have found that a strain of H5N1 bird flu that mutated in pigs in Indonesia has acquired the ability to infect humans. The discovery was made by a team led by virologist Yoshihiro Kawaoka of the University of Tokyo's Institute of Medical Science. Kawaoka is concerned that a highly pathogenic virus that spreads easily to humans could develop without being noticed unless pigs are regularly tested for viruses even when they are asymptomatic. The Japanese researchers, in cooperation with Indonesia's Airlangga University, examined nasal, fecal and serum samples from 702 randomly chosen pigs in 14 provinces from 2005 to 2009. Among 39 H5N1 samples analyzed, one was found to have the ability to attach itself to human nasal or throat cells. The team’s findings are reported in an article in Emerging Infectious Diseases (see citation for Nidom below). + ( + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_09_10.html b/data/flu-report-html/usgs_avian_flu_report_2010_09_10.html new file mode 100644 index 0000000..3d024c7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_09_10.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, September 10 +

+

+ Chairul Nidom of Airlangga University in Surabaya, Indonesia, and colleagues in Japan have been tracking H5N1 in pigs since 2005 in Indonesia, the country hardest hit by the avian flu virus. They report that 7.4 percent of the 700 pigs that they tested between 2005 and 2009 carried the H5N1 virus. Although H5N1 bird flu kills 60 percent of the people that it infects, it has not caused a pandemic because it does not spread easily from human to human and only 505 individuals have been infected since 2003 worldwide. Scientists are concerned that the virus will adapt in pigs, which have many similarities to humans, and will be able to spread more easily. The scientists show that one of the 39 strains of H5N1 virus from pigs shows signs of being able to infect people. Researchers encourage countries to improve influenza surveillance in pigs, because infected pigs show no symptoms. +

+

+ + Chinese Taipei + + . A farmer in Tai-Tung prefecture reported signs of parakeratosis (scaly skin) in his pigs to the prefecture animal disease control competent authority on September 2. Samples were collected and sent to the Animal Health Research Institute for diagnosis. Testing revealed the pigs were infected with the 2009 pandemic H1N1 influenza virus. Only 4 cases were confirmed in a herd of 4,000 pigs. Prevention methods such as movement control and disinfection of the premises were implemented. Follow-up tests on September 6 returned negative results. +

+

+ + H5N1 in Wild birds +
+ Thailand +
+ . A study has shown that gulls brought the bird flu virus back to Thailand. "We have scientific evidence that a seagull was the carrier of the birdflu virus, not the openbill stork," said Professor Pilaipan Puthavathana of Mahidol University's Department of Microbiology. His research team studied the migratory patterns of birds and discovered that some brown headed gulls fly to Cambodia and China in the winter. The team isolated the H5N1 virus in four of 153 birds of this flock in 2005 and 2008. The flock might have played a role in the spread of H5N1 virus along its route. The researchers hope that this information will help in surveillance efforts. +

+

+ + Other publications of interest + +

+
    +
  • + Muranaka M et al. Distribution of Influenza Virus Sialoreceptors on Upper and Lower Respiratory Tract in Horses and Dogs. J Vet Med Sci. 2010 Aug 25. [Epub ahead of print] +
  • +
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_09_17.html b/data/flu-report-html/usgs_avian_flu_report_2010_09_17.html new file mode 100644 index 0000000..48a1fd6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_09_17.html @@ -0,0 +1,2057 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, September 17 +

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+ According to the United Nations Food and Agriculture Organization (FAO), the number of countries affected by H5N1 bird flu and the number of reported H5N1 outbreaks have increased this year for the first time since 2007. Sixteen countries (plus Hong Kong) had H5N1 outbreaks this year through August, compared with about eleven in all of 2009, according to charts in the Sep 2 issue of FAO AIDE News, a bulletin that reports periodically on avian flu. Since the beginning of this year 390 outbreaks have been reported, whereas only 297 were reported in all of 2009. The FAO cautioned that the number of outbreaks reported is more subjective than the number of affected countries because outbreak reports are influenced by the case definition, awareness level, and effectiveness of surveillance. In particular, the report says a big increase in reported H5N1 outbreaks in Egypt this year "is most likely the result of improved surveillance through the effectiveness of the CAHO [Community Animal Health Outreach] programme." A number of countries that had formerly eradicated the disease experienced new outbreaks this year including Cambodia, Israel, Laos, Myanmar, Nepal, and Romania. Bhutan is the only country newly affected by the virus so far this year. The peak month for H5N1 reports this year was February. +

+

+ + H5N1 in Wild birds + +
+ The Sep 2 issue of FAO AIDE News reports that cold weather is a factor in the spread of H5N1 bird flu among wild birds. A direct relationship between cold weather and the disease was first established in 2006 when a cold spell in Europe coincided with an increase in H5N1 detection in wild birds. An FAO research team investigated to see if the geographic distribution of these infections was related to the long-term wintering line (a line marking the limit beyond which areas are unsuitable for wintering waterfowl) and found that the detection cites were closer to the line than would be expected by chance. The rationale is that wild birds are likely to congregate in water bodies with partial frost conditions, which enhances the transmission and local spread of the disease. These hotspots then build up environmental virus loads of H5N1 that can persist until spring in cooler areas. Their findings suggest that during anomalous cold weather periods could act as a warning for authorities to increase wild bird influenza surveillance in European wintering sites. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A nine-year-old girl from West Kalimantan province is hospitalized with suspected bird flu. The patient was admitted to bird flu/swine flu isolation unit of Dr Soedarso hospital on September 13 for bird-flu like symptoms. It was reported that chickens raised in the patient’s house had died suddenly before she developed symptoms. A throat swab has been taken and sent to the Ministry of Health laboratory in Jakarta for testing. + + more... + + ) +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_09_24.html b/data/flu-report-html/usgs_avian_flu_report_2010_09_24.html new file mode 100644 index 0000000..c75a9a4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_09_24.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, September 24 +

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+ + H5N1 in Poultry +
+ Indonesia +
+ . At least 24,000 birds in nine sub-districts of Luwu Timur in South Sulawesi province were infected by H5N1 bird flu. Testing was done by rapid test and confirmed by laboratory examination at the Veterinary Disease Investigation Center laboratory in Maros. The regional government has instituted control measures, such as burning dead chickens and activating bird flu control points in each sub-district. The outbreak was reported on September 21. So far there have been no human cases associated with the outbreak. +

+

+ News Update, September 17 +

+

+ According to the United Nations Food and Agriculture Organization (FAO), the number of countries affected by H5N1 bird flu and the number of reported H5N1 outbreaks have increased this year for the first time since 2007. Sixteen countries (plus Hong Kong) had H5N1 outbreaks this year through August, compared with about eleven in all of 2009, according to charts in the Sep 2 issue of FAO AIDE News, a bulletin that reports periodically on avian flu. Since the beginning of this year 390 outbreaks have been reported, whereas only 297 were reported in all of 2009. The FAO cautioned that the number of outbreaks reported is more subjective than the number of affected countries because outbreak reports are influenced by the case definition, awareness level, and effectiveness of surveillance. In particular, the report says a big increase in reported H5N1 outbreaks in Egypt this year "is most likely the result of improved surveillance through the effectiveness of the CAHO [Community Animal Health Outreach] programme." A number of countries that had formerly eradicated the disease experienced new outbreaks this year including Cambodia, Israel, Laos, Myanmar, Nepal, and Romania. Bhutan is the only country newly affected by the virus so far this year. The peak month for H5N1 reports this year was February. +

+

+ + H5N1 in Wild birds + +
+ The Sep 2 issue of FAO AIDE News reports that cold weather is a factor in the spread of H5N1 bird flu among wild birds. A direct relationship between cold weather and the disease was first established in 2006 when a cold spell in Europe coincided with an increase in H5N1 detection in wild birds. An FAO research team investigated to see if the geographic distribution of these infections was related to the long-term wintering line (a line marking the limit beyond which areas are unsuitable for wintering waterfowl) and found that the detection cites were closer to the line than would be expected by chance. The rationale is that wild birds are likely to congregate in water bodies with partial frost conditions, which enhances the transmission and local spread of the disease. These hotspots then build up environmental virus loads of H5N1 that can persist until spring in cooler areas. Their findings suggest that during anomalous cold weather periods could act as a warning for authorities to increase wild bird influenza surveillance in European wintering sites. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A nine-year-old girl from West Kalimantan province is hospitalized with suspected bird flu. The patient was admitted to bird flu/swine flu isolation unit of Dr Soedarso hospital on September 13 for bird-flu like symptoms. It was reported that chickens raised in the patient’s house had died suddenly before she developed symptoms. A throat swab has been taken and sent to the Ministry of Health laboratory in Jakarta for testing. + + more... + + ) +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_10_01.html b/data/flu-report-html/usgs_avian_flu_report_2010_10_01.html new file mode 100644 index 0000000..ca5581d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_10_01.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, October 1 +

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+ + H5N1 in Poultry +
+ Indonesia +
+ . Four cities (Pinrang, Luwu Utara, Sidrap, and Polman) in South Sulawesi province have experienced outbreaks of bird flu or suspected bird flu since September 21. Pinrang has been hit the hardest with at least 4,094 backyard chickens dead from bird flu, which was diagnosed by clinical observation, necropsy, and rapid testing. The head of the Animal Health Division, Livestock Service of Pinrang, Elvi Martina, said that the outbreak was probably caused by heavy rainfall. In order to prevent the spread of the disease, the Livestock Service is conducting surveillance in the area, burning dead chickens, culling surviving chickens, disinfecting premises, distributing masks and gloves to people in the area, and advising people not to market sick birds or dispose of them in rivers or the sea. Luwu Utara and Sidrap also experienced the deaths of thousands of chickens. In Luwu Utara bird flu has been confirmed so surviving chickens were culled or vaccinated and the premises were disinfected to prevent the spread of the disease. In Sidrap the cause of death is still under investigation. The local Livestock and Fishery Service in Sidrap has strengthened livestock traffic control to prevent the introduction of the disease from nearby cities. Most recently, bird flu was reported in Polman on September 29. About 200 chickens in an abattoir and hundreds of chickens on several farms died suddenly after showing signs such as darkening of the wattle, comb, and skin. The Livestock Service has confirmed bird flu infection in this area. Samples have been collected for further analysis by Maros (Veterinary Disease Investigating Center). Sick birds have been culled, healthy birds have been evacuated and affected areas have been disinfected to prevent the spread of the disease. +

+

+ In Ponrogo, East Java, an outbreak was reported in the local news on September 26. Dozens of apparently healthy chickens died overnight. Laboratory tests by the Health Service were positive for H5N1 bird flu. After the findings, people culled and burned the surviving birds. +
+ Rapid tests by the Agriculture, Marine and Fishery Service identified bird flu in chickens that had died in Balikpapan, East Kalimantan, in late September. Control measures such as sterilization of chicken cages and culling the remaining chickens have been undertaken. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . Since the H5N1 bird flu outbreak began in Pinrang, South Sulawesi, eight local people have developed symptoms such as fever and coughing, but the Health Service has not announced them as possible bird flu patients. Medical history mentioned that they developed illness after contact with sick birds. The Health Service is observing the progress of these patients. +

+

+ Three residents of Pinrang and one resident of Soppeng are being treated in the Inspection Center of Wahidin Sudirohusodo, Makassar, South Sulawesi. The three patients from Pinrang, a 17-year-old, a 42-year-old, and a 4-year-old, were admitted on September 29. The 3-year-old from Soppeng was admitted the day before. According to the director of Wahidin Sudirohusodo Hospital, Andi Kalsum Patonangi, the patients are suspected to have contracted bird flu infection because they became ill shortly after many chickens died nearby. However, the hospital is still awaiting laboratory confirmation of bird flu infection. So far all of the patients are improving, but they are still in intensive care. + + more... + + ) +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_10_08.html b/data/flu-report-html/usgs_avian_flu_report_2010_10_08.html new file mode 100644 index 0000000..1c420c6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_10_08.html @@ -0,0 +1,2061 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, October 8 +

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+ + H5N1 in Poultry +
+ Indonesia +
+ . Hundreds of chickens that died in the Soppeng regency of South Sulawesi province tested positive for bird flu according to an announcement from the Department of Animal Husbandry and Fisheries on September 30. The Department has urged people to destroy diseased chickens and keep the cages of healthy chickens clean to prevent the disease from spreading. +

+

+ + Taiwan (LPAI) + + . A poultry farm in Chang-Hua city experienced an outbreak of low pathogenic bird flu starting September 20. Testing done by the Animal Health Research Institute as part of routine surveillance revealed that 20 birds tested at the 18,000-bird farm were positive for H5N2 bird flu. Measures taken to prevent the spread of the disease included movement control, quarantine, screening, zoning, and disinfection of the premises. A clinical and epidemiological investigation of nearby poultry farms and a viral pathogenicity test are underway. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 17-year-old girl from Riau province was treated at Husada hospital for suspected bird flu based on a medical examination. Chickens have died in the neighborhood and have tested positive for bird flu according to local reports. As of October 1, the patient had returned home and was being treated as an outpatient. A 15-year-old boy from East Kalimantan province was isolated in Kanujoso Djatiwibowo hospital in Balikpapan on October 3. The patient was admitted with a high fever on October 2 after chickens that were raised in his house died suddenly. The chief of the neighborhood has instructed residents to cull all chickens in the area to stop the spread of the disease in case the chickens died from bird flu. The patient is still being treated and a blood sample has been taken to confirm the cause of illness. + + more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_10_15.html b/data/flu-report-html/usgs_avian_flu_report_2010_10_15.html new file mode 100644 index 0000000..5e767c5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_10_15.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, October 15 +

+

+ + Indonesia + + . In July, the Participatory Disease Surveillance Response (PDSR) program found that the overall incidence of highly pathogenic bird flu was 0.5 per 1,000 villages under surveillance; Bengkuli province had the highest number of incidences (4.7 per 1,000 villages). Seventeen newly infected villages were found in Sumatra, 17 in Java, 2 in Kalimantan, and 3 in Sulawesi. In August, the overall incidence was 0.6 villages per 1,000 villages under surveillance. Bengkuli remained the province with the highest number of incidences with 12.6 per 1,000 villages. Twenty-three newly infected villages were found in Sumatra, 15 in Java, 5 in Kalimantan, and 1 in Sulawesi. The PDSR program works through 33 Local Disease Control Centers and covers 71,192 villages in 84 percent of Indonesia. +

+

+ + H5N1 in Wild birds + +

+

+ At Qinghai Lake in China, where more than 6,000 wild birds died in 2005, migrating birds are being tracked by satellite. This is one in a series of investigations that began after H5N1 bird flu first swept the region in 2005. The studies aim to pinpoint the viral reservoir and to determine the role that wild birds play in transmission. No reservoir has yet been found, but transmission routes have become more clear. +

+

+ + H5N1 in Poultry + +

+

+ + Egypt + + . A total of 18 highly pathogenic bird flu outbreaks were reported in 7 governorates in September; 2 in Beni Suef, 6 in Fayoum, 1 in Giza, 6 in Menoufia, and 3 in Qualyoubiyah. Most of the outbreaks were in household poultry, but one in Qualyoubiyah was on a commercial farm where the poultry had been vaccinated. +

+

+ + Indonesia + + . According to Murtala Ali, the head of South Sulawesi’s animal husbandry office, bird flu has killed at least 49,000 chickens and ducks in the province over the last four months. Ali said on October 9 that he had ordered related authorities in districts and cities to destroy the infected chickens and ducks, prohibit the transport of chickens from infected areas to other places, intensify the vaccination of chickens, disinfect chicken nests, and increase public awareness. The dead birds were found in 11 districts and towns (Takalar, Makassar, Luwu Timur, Luwu Utara, Soppeng, Pinrang, Parepare, Sidrap, Barru, Bulukumba and Bone); the other 13 districts of the province have been declared free from bird flu virus. Ali said that the bird flu virus did not endanger local residents since recent suspected bird flu patients had been confirmed free from the virus and nobody in the province has died from bird flu in the past two years. +

+

+ In Banyumas, Central Java, 845 birds have died from the H5N1 virus since January. Prevalence of the disease was low from January to September but began to rise in October. People dumped dead chickens in the river, which caused bird flu to spread along the waterway. Control measures such as disinfection of cages and bringing free-range chickens inside have been put in place. Vaccination was considered less effective as a control measure since only about 20 percent of birds could be vaccinated in time and the vaccination would cause stress to the animals. +

+

+ On October 14, the Livestock Service of Bengkulu, Southwest Sumatra, announced emergency status for four sub districts experiencing bird flu outbreaks (Kecamatan Luas, Kelam Tengah Kaur Selatan, Padang Guci Hulu and Tetap). So far the disease has not spread to humans. +

+

+ The Head of the Agriculture and Livestock Service of Palopo, South Sulawesi, said on October 15 that laboratory examination confirmed that H5N1 bird flu caused the deaths of dozens of broiler chickens in Palopo, South Sulawesi. Flocks have been depopulated, infected areas have been disinfected, and officials are working to raise public awareness in order to control the spread of the disease. So far the virus has not spread to humans. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_10_27.html b/data/flu-report-html/usgs_avian_flu_report_2010_10_27.html new file mode 100644 index 0000000..483cf11 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_10_27.html @@ -0,0 +1,2101 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, October 28 +

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+ + H5N1 in Humans +
+ Indonesia +
+ . A five-year-old girl in West Sumatra suspected of having H5N1 bird flu died on October 25. The patient was treated in the internal medicine isolation unit of M Djamil hospital for four hours before her death. She had originally been admitted to Talu public health center, was transferred to Jambak Pasbar regional hospital, and then transferred again to M Djamil hospital because her condition was deteriorating. A lung examination done at the hospital showed pneumonia, which may be a sign of bird flu. M Djamil hospital collected the patient’s blood and throat swab samples for further examination at the Indonesia Ministry of Health Research and Development laboratory. Field investigation has found dead chickens near the patient’s house. However, those chickens had shown symptoms of convulsion, and did not die suddenly as birds with bird flu normally do. +

+

+ Three other patients, an eight-year-old, a nine-year-old, and a five-year-old, in Lampung are being treated for suspected bird flu. According to Abdoel Moeloek, director of the hospital, they were admitted on October 21 with symptoms such as high fever, coughing, and digestive trouble. The patients had recently been in contact with dead chickens that tested positive for H5N1 bird flu. The hospital treated them with antibiotics and Tamiflu and took samples to test for bird flu. The patients are currently in good condition. +

+

+ A rapid test on a baby previously suspected of bird flu in Balikpapan came back negative for H5N1. Dr. Maurits, spokesman of the hospital, reports that the patient is in good condition, but will continue to be treated until the laboratory confirmation has come back from Jakarta. +

+

+ News Update, October 15 +

+

+ Historical analysis of a disease outbreak in poultry in the United States in 1872 by Jeffrey K. Taubenberger from the National Institutes of Health suggests that the outbreak, which was followed by a national outbreak of influenza in horses, may have been highly pathogenic avian influenza (HPAI). The epizootic was called “henfluenza” at the time, but was not discussed in the scientific literature and had to be researched through web-based searching of newspaper archives. During the outbreak, whole flocks usually got sick at the same time, with most or all of the birds dying. The disease struck prairie chickens, turkeys, ducks, and geese as well as chickens. The first documented outbreak of HPAI occurred only 6 years later in 1878. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . In an effort to free the capital of bird flu, under the leadership of Fauzi Bowo and Prijanto, 50 percent of chicken collectors and slaughterers will be moved to three designated locations in East Jakarta. The head of the Jakarta Maritime and Fishery Agency, Ipih Ruyani, described the current situation: +

+
    +
  • + 15 shelters in East Jakarta have been transferred to RPA Rawakepiting, RPA Pulogadung, with a capacity of 70 thousand chickens, has received a total of 17 relocated shelters +
  • +
  • + 36 other shelters are still in the registration process. +
  • +
  • + the remaining 46 shelters in East Jakarta have refused to move on the grounds that the three designated RPAs only have slaughtering facilities and do not yet have storage facilities. +
  • +
  • + There are currently 186 chicken shelters and 2,034 slaughterers in the city. Of these 2,034 slaughterers, 1,500 are illegal, because they operate in markets and places close to residential areas. +
  • +
+

+ Bird flu has re-emerged in Central Java because of extreme weather. According to the spokesman of the Livestock and Fishery Service, John Mauglapy, about 556 chickens and 1,508 quails have died and all tested positive for H5N1. The infected areas have been disinfected and farmers have been advised not to trade sick chickens but to cull and burn them in order to prevent the spread of the disease. +

+

+ + S. Korea (LPAI) + + . An outbreak of low pathogenic bird flu was discovered on a farm in Ch’ungch’ong-Namdo province during routine surveillance. The Chungcheongnam-do Veterinary Research Institute tested samples from ducks on October 5 and the results came back positive for H7N7 bird flu on October 15. The source of the outbreak is unknown, but control measures such as quarantine, culling, movement control, zoning, and disinfection were put in place. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . The Ministry of Health of Indonesia announced two new cases of human infection with H5N1 bird flu. A 35-year-old man from Jakarta province developed symptoms of bird flu on August 16, was hospitalized on August 20, and died on August 27. It is thought that he contracted the disease from chickens that died near his house. A 40-year-old woman from West Java province died on September 17 from bird flu, after developing symptoms on September 9 and hospitalization on September 12. Laboratory testing confirmed H5N1 bird flu in both cases. +

+

+ A 4-month-old baby has been hospitalized at Kanudjoso Djatiwibowo hospital (RSKD) with suspected bird flu. “The baby is still under observation. Still not stated as bird flu suspect, but there is [a] possibility since the baby shows breathing difficulty. We’re still waiting for the report from RSKD,” said Dyah Muryani, Balikpapan city authority. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_11_05.html b/data/flu-report-html/usgs_avian_flu_report_2010_11_05.html new file mode 100644 index 0000000..72c5df0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_11_05.html @@ -0,0 +1,2057 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, November 5 +

+

+ + H5N1 in Wild birds +
+ Thailand +
+ . A recently published study examined the prevalence of H5N1 in wild birds in Central Thailand. See the reference to Siengsanan-Lamont et al. for more details. Here is the abstract from the study: “A serological and virological surveillance program was carried out from February 2007 to October 2008 to investigate the infection status of highly pathogenic H5N1 bird flu in wild bird populations in Banglane district, Nakhon Pathom province. Choanal and cloacal swabs, serum and tissue samples were collected every two months. A total of 421 birds comprising 44 species were sampled. Sero-prevalence of the virus tested by H5N1 serum neutralization test was 2.1%. Species such as rock pigeons (Columba livia), Asian pied starling (Gracupica contra), spotted dove (Streptopelia chinensis), oriental magpie robin (Copsychus saularis), blue-tailed bee-eater (Merops philippinus), myna (Acridotheres spp.), and pond heron (Ardeola spp.) tested antibody positive. Only 2 of the 421 birds, an Asian pied starling and a white vented myna, tested positive for H5N1 bird flu by virus isolation. Researchers collected positive virological samples in June 2007 and all positive serology samples between May and August except for one sample collected in December 2007. No positive samples were collected in 2008. The wild bird viruses were similar to poultry viruses isolated in other parts of Thailand on a molecular level, but there were no concurrent studies on the prevalence of H5N1 in poultry within the same study area. Possible origins of the virus include spill-over of H5N1 viruses from contaminated sources due to the movement of domestic poultry or spread from migrating birds that had been infected within outbreak locations.” +

+

+ + H5N1 in Humans + +
+ + Indonesia + + . An 8-year-old boy from Cipadu Jaya, Tangerang is being treated at Tangerang General Hospital for suspected bird flu. “His condition is getting worse, but we are still waiting for test results,” the hospital’s disease control chief Dr. Ati Pramudji said on Tuesday, November 2. The patient had no reported contact with poultry before becoming ill. He has been treated with Tamiflu. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_11_18.html b/data/flu-report-html/usgs_avian_flu_report_2010_11_18.html new file mode 100644 index 0000000..1fc2629 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_11_18.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds + +
+ A bird flu surveillance program in Azerbaijan began on November 1. Samples from 18 wild birds and 1,127 poultry representing different farms and private economies were tested. The study had participants from the State Veterinary Service, Ministries of Health, Ecology and Natural Resources, and the Hunters' Association. The Republican Veterinary Lab tested the samples and found no bird flu. Another monitoring effort will begin on December 13. +

+

+ + H5N1 in Poultry +
+ Germany +
+ . Low-pathogenic H5N2 was detected on a poultry farm in Mecklenburg-West Pommerania during a routine visit from officials. On November 12, the Ministry of Agriculture ordered the culling of 17,000 ducks and geese for fear that the disease might mutate into high pathogenic bird flu. Bird flu was last reported in Germany in 2006. +

+

+ + H5N1 in Humans +
+ Hong Kong +
+ . A 59-year-old woman in Hong Kong diagnosed with H5N1 bird flu has been quarantined while officials inspect the poultry markets. According to a November 18 statement by Secretary for Food and Health, York Chow, there was no evidence of human-to-human transmission. The patient had recently visited China with her family and ate chicken in a poultry market there, but it is uncertain whether this was the cause of her infection or whether she caught the disease upon her return to Hong Kong on November 1. She began to show symptoms the next day, and was hospitalized on November 14 with a persistent fever. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_12_03.html b/data/flu-report-html/usgs_avian_flu_report_2010_12_03.html new file mode 100644 index 0000000..fd5c2d8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_12_03.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 3 +

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+ + H5N1 in Wild birds +
+ China +
+ . Researchers believe that captive rearing of bar-headed geese in China provides a possible scenario for the emergence of the Qinghai Clade 2.2 bird flu virus and its occurrence in wild birds. The first outbreak of H5N1 bird flu at Lake Qinghai occurred in 2005 and killed more than 6,000 birds, including more than 3,000 bar-headed geese. More outbreaks of bird flu all involving bar-headed geese occurred in the same area in 2006, 2007, 2009, and 2010. It has been reported that there was little domestic poultry production in the areas surrounding these outbreaks. The authors of a letter to the Journal of Wildlife Disease (see citation below) discovered that raising bar-headed geese in captivity was practiced extensively in this region of China, raising the possibility of contact with wild birds. Bar-headed geese have been raised in China since 2003 both for their meat and to supplement the declining wild population. The birds are often kept in close contact with domestic poultry and may have become infected with bird flu through them. At other times they graze outdoors with wild birds and could have transmitted the disease to wild flocks. The authors found no direct evidence that captive rearing of bar-headed geese was involved in the outbreaks in the Qinghai lake area, but they believe the possibility deserves scientific study. +

+

+ + H5N1 in Poultry +
+ Japan +
+ . On November 30, Shimane prefecture began culling 23,000 chickens on a farm because of the discovery of highly pathogenic bird flu virus. Five chickens were found dead on the farm and preliminary tests were positive for avian influenza. Further testing has confirmed the virus is of the H5 subtype. Further characterization has shown the virus to be highly pathogenic, killing 75% of experimentally infected chickens. The amino acid sequence of the hemagglutinin gene indicate that the virus is identical to the H5N1 virus found in wild bird fecal samples collected in October in Lake Onuma, Hokkaido. The culling was expected to take 2-3 days. In addition a task force has been set up to deal with the possible outbreak. Shimane and neighboring prefectures conducted checks for the virus on 130 farms and disinfected vehicles that travel roads near the infected farm. If the outbreak is confirmed, it will be the first in Japan since 2009. +

+

+ + Georgia + + . An outbreak of possible bird flu or Newcastle disease killed 60 birds in a village in Georgia. The government does not subsidize vaccination of poultry and advises the residents to vaccinate remaining poultry through their own efforts. +

+

+ + Vietnam + + . The Department of Animal Health confirmed a bird flu outbreak in Nam Dinh province. The outbreak was discovered on a farm in Y Yen district on November 22. More than 2,000 ducks had died on another farm in the same district from November 16 to 18. Local authorities have culled nearly 1,600 birds so far. +
+ According to a November 27th report, in Nghe An province, Dien Chau district, nearly 600 birds infected with H5N1 bird flu were culled. Health officials sterilized the breeding facilities and isolated epidemic areas to prevent the spread of the disease. An outbreak of bird flu also occurred in Ha Tinh province, Cam Xuyen district. +

+

+ + Canada (LPAI) + + . An outbreak of low pathogenic H5N2 bird flu was confirmed on November 23 on a poultry farm in Manitoba. The disease infected 3,000 turkeys on the farm of 7,400. There was no increase in mortality and no respiratory disease was observed. The farm has been quarantined and an investigation into the origin of the outbreak will be conducted. In addition the disease will be stamped out and the premises will be disinfected to prevent the disease from spreading. Preliminary results from the National Center for Foreign Animal Diseases in Winnipeg indicate the presence of a H5N2 subtype avian influenza virus (PCR), but virus isolation is still underway and additional testing is to come, including the intravenous pathogenicity index test. +

+

+ + Germany (LPAI) + + . Low pathogenic H5N2 bird flu was confirmed on a farm in Mecklenburg-Vorpommern. The outbreak was first observed on November 10, confirmed on November 11, and reported on November 15. All 17,000 birds are thought to be susceptible to the disease. No birds have died from the virus and none have been culled. Contact with wild species has been identified as the origin of the outbreak. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . Two brothers from East Kalimantan province have been hospitalized with suspected H5N1 bird flu. They are isolated in the General Hospital Kanudjoso Djatiwibowo. The brothers came in with symptoms such as shortness of breath and have a history of contact with dead chickens. According to Dyah Muryani on November 22 the hospital was still awaiting lab results to confirm the cause of illness. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_12_09.html b/data/flu-report-html/usgs_avian_flu_report_2010_12_09.html new file mode 100644 index 0000000..5e57cc5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_12_09.html @@ -0,0 +1,2081 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 9 +

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+ + H5N1 in Wild birds +
+ S. Korea +
+ . According to the Ministry for Food, Agriculture, Forestry and Fisheries, a blood sample from a wild mallard in the Mangyeong River in North Jeolla tested positive for H5N1 bird flu. The sample was taken as part of the annual preventive inspection of migratory birds and the result was confirmed on December 7. In order to keep the disease from spreading to domestic poultry, the ministry is conducting an emergency disinfection of the area around the river and has established a quarantine zone within a 10 km (6.2 mile) radius with four mobile quarantine posts within a 1-km radius of the epicenter. Since the positive test was not from a poultry farm, Korea maintains avian-influenza free status and is able to export poultry. There are 13 duck farms and roughly 3.2 million poultry being raised within the management zone. Officials are monitoring birds for sickness and installing nets around farms to keep away wild birds. These farms will not be able to ship poultry until quarantine officials have cleared them. +

+

+ + H5N1 in Poultry +
+ Azerbaijan +
+ . According to the Deputy Minister of Health, Elsever Agayev, bird flu has been discovered in poultry in Samukh region. The State Veterinary Service received blood samples for testing after many birds died in the region. Officials have verified that the virus has an H5 subtype but are awaiting further tests to determine whether or not it is H5N1 bird flu. +

+

+ + Egypt + + . According to a report on December 7, field tests carried out by the Directorate have discovered 89 domestic poultry breeding locations that are positive for bird flu. Infected birds have been culled and nearby birds have been vaccinated to prevent the spread of the disease. Engineer Sami Amara, Governor of Menoufiya, urges more severe measures, such as preventing the circulation of live birds and emphasizing education of citizens. +

+

+ + Nepal + + . A farm housing 11,503 poultry in Narayani zone experienced an outbreak of H5N1 bird flu beginning on October 25. The disease killed 66 birds on the farm;the rest were culled to prevent the spread of the disease. Other measures such as quarantine, movement control, disinfection of the premises, and dipping/spraying have been enacted. The cause of illness was determined as H5N1 by the Central Veterinary Laboratory on October 27 and this result was confirmed by the Veterinary Laboratories Agency on November 19. The origin of the outbreak is unknown but the event was resolved on October 30. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . Abdel Rahman Shahin, the official spokesperson for the Ministry of Health, announced on December 4 that a 30-year-old woman from governorate of Gharbia died from bird flu. Hers is the 37th death from bird flu in Egypt since the disease first appeared in 2006 and the tenth bird flu fatality to occur in Egypt in 2010. +

+

+ + Indonesia + + . The Ministry of Health reported that H5N1 bird flu has been confirmed in a patient being treated at RS Hasan Sadikin Hospital in Bandung. The patient is alive and is still receiving treatment. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2010_12_17.html b/data/flu-report-html/usgs_avian_flu_report_2010_12_17.html new file mode 100644 index 0000000..f5d83aa --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2010_12_17.html @@ -0,0 +1,2055 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds +
+ South Korea +
+ . Quarantine officials found 2 dead eagle owls that were infected with the H5N1 bird flu in the west central part of the country on December 10. The Farm Ministry reports that since the disease has not been found in any domestic poultry, the country is still considered free from infection and exports will not be affected. The bird carcasses were found near Seosan in the northern part of the country. No human cases have been reported in the country so far. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . Specialists report that the number of deaths from avian flu in Indonesia is the highest worldwide and may be due to a slow response rate and surveillance challenges. Indonesia has the highest fatality rate from bird flu, 83%, whereas Egpyt, which has the most number of reported human cases this year, has only a 32% mortality rate. There have been 171 cases of bird flu in humans since 2003. Since it was first detected in central Java in 2003, the disease has spread to 31 out of 33 provinces nationwide, caused more than $500 million in economic losses and disrupted the livelihoods of more than 10 million people who rely on poultry, according to the UN Food and Agriculture Organization (FAO). Many people in Indonesia do not seek medical attention in time and rely on traditional medicine. Intensive medical attention is required within the first 24-48 hours of reported symptoms to treat H5N1. Indonesia is comprised of 17,000 islands and has a population of 250 million people, making virus surveillance difficult. "It could be that milder cases simply aren't being detected due to the size and decentralization of the country, so only the really serious cases are being noticed," said Brenda Langdon, pandemic influenza adviser in the office of the UN Resident Coordinator in Jakarta. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_01_14.html b/data/flu-report-html/usgs_avian_flu_report_2011_01_14.html new file mode 100644 index 0000000..8801d2e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_01_14.html @@ -0,0 +1,2123 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jan 14, 2011 +

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+ News Update, January 14 +

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+ + H5N1 in Wild birds +
+ Japan +
+ . According to the Izumi Municipal government, two more hooded cranes (Grus monacha) wintering in the Izumi plain in Kagoshima Prefecture tested positive for bird flu in a preliminary test. So far a total of five cranes are confirmed to be infected with H5N1 bird flu. As of January 4, the city said that it has not seen evidence of massive deaths of wild birds. +

+

+ + South Korea + + . South Korea's farm ministry reported on December 28 that it found 20 dead spectacled teal ducks, apparently infected with H5N1 bird flu, and has taken emergency decontamination measures. The birds were identified as mallards (Anas platyrhynchos) in the official report to OIE, but some veterinarians in the country said they are likely to be Baikal Teal (Anas formosa) instead. The dead birds were found 430 km south of Seoul and were the third group of birds reported dead from H5N1 in South Korea in December. +

+

+ Five wild ducks were found dead near Jumoon-ri, Sacheon City on December 26. One of the birds has been confirmed to be infected with H5N1 in the official report to OIE where the bird was identified as a mallard. A Mandarin duck (Aix galericulata) found dead in the same area on December 30 also tested positive for H5N1. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . Bird flu broke out on a commercial poultry farm in Dhaka division on January 1, killing 530 birds on a farm of 6500. The remaining birds were culled to prevent the spread of the disease. The origin of the outbreak is unknown, but preventative measures such as stamping out, movement control within the country, and disinfection of the premises have been put in place. Tests by the Bangladesh Livestock Research Institute and the Central Disease Investigation Laboratory in Dhaka were positive for H5N1 bird flu. +

+

+ + Indonesia + + . In Central Java, 300 broilers from a commercial farm and 50 backyard chickens died of H5N1 bird flu. “We received reports of bird flu suspicion, and then confirmed it by rapid test to the dead chickens,” said Slamet Saryono, the head of the Livestock and Fishery Service. The backyard chickens were observed dying first and after several days the chickens on the commercial farm began to die as well. The bodies of the dead chickens have been burnt to prevent the spread of the disease, and around 7,200 chickens from local houses and commercial farms will be quarantined for 14 days. +

+

+ In Surabaya, East Java, 76 chickens owned by a resident died suddenly. Because the owner had disposed of the bodies, the Livestock Service of Surabaya diagnosed bird flu through rapid tests of throat mucus and shedding of the virus in the surviving chickens. Instead of stamping out the surviving chickens and burning their cages, all birds in the area will be confined to cages and monitored for two weeks. +

+

+ + South Korea + + . On December 31, South Korea reported the first outbreak of H5N1 bird flu in domestic poultry in two years. Two poultry farms in South Jeolla province and Chungcheong province first detected bird flu on December 29 as birds began to die off. Together the farms contained a total of 27,850 chickens and ducks. Both farms have been placed under quarantine with authorities moving to cull and bury their ducks and chickens to prevent the disease from spreading. Quarantine officials had stepped up inspections on wild birds and urged poultry businesses to take extra precautions, like setting up nets around their farms to keep out wild birds, after wild birds were confirmed to have the disease earlier in the month. More than 100,000 birds have been slaughtered in efforts to contain the disease and health authorities placed a quarantine zone over a 10 km (6.25 mile) radius, restricting movements of vehicles and people and carrying out emergency disinfection. The latest confirmation effectively ends South Korea's bird flu-free status and will halt exports of chickens, ducks and related products. The bird flu outbreak is likely to further strain the country's health system, which has been struggling to contain swine flu and foot-and-mouth disease cases across the country. +

+

+ Bird flu was reported on January 5 at a duck farm in South Jeolla Province. It was confirmed as H5N1 bird flu by laboratory testing after 4,500 of the 14,500 ducks on the farm died. The Food, Agriculture, Forestry and Fisheries Ministry said close inspections are underway at a Yeongam duck farm. “Ducks continued to die Sunday and Monday so the owner of the farm reported this to quarantine authorities,” a ministry official said. “The report was delayed because unlike chickens, ducks show no particular symptoms when infected with bird flu.” Authorities culled and buried not only the ducks on the farm but also 70,000 poultry within a 500-meter radius to prevent the disease from spreading. +

+

+ On January 6, South Korea confirmed its first bird flu outbreak in the Gyeonggi region near Seoul, raising concerns that the highly contagious disease is spreading across the country despite quarantine efforts. According to the Farm Ministry, birds on a farm in Anseong began dying off over the weekend and a duck tested positive for H5N1 bird flu. This is the first case of H5N1 in the province in nearly three years and the ninth outbreak in the country this year. "All 32,000 ducks on the (Anseong) farm have already been ordered destroyed on Sunday as a precautionary measure, with 55,000 other birds within a 500-meter radius to be culled," an official said. In addition, he reported that birds within a 10-kilometer area of the poultry farm will be barred from being sold on the market or moved, while front-line inspectors will carefully monitor birds for sharp hikes in sudden deaths and drops in egg production. +

+

+ On January 7, six duck farms in Naju and Yeongam County, South Jeolla province, were reported to be affected by H5N1 bird flu. Suspected cases were also reported in Suncheon, South Jeolla province. Over 800,000 birds in the province have been culled so far as a preventative measure. A quarantine official said, “We are making every effort to prevent the virus that has already affected South Jeolla province from spreading to other regions.” +

+

+ + UK (H1N1) + + . Testing has confirmed that turkeys on a farm in Cheshire are infected with H1N1 flu virus. The strain is closely similar to the human pandemic H1N1 strain currently circulating. After a thorough health risk assessment, the Health Protection Agency reported that there was no risk to public health. The birds were tested after showing mild signs of disease and their health improved during the investigation. Restrictions on the farm have been lifted because there is no food safety risk. Pandemic H1N1, in common with avian influenza, has not been shown to be transmissible to people through eating properly handled and cooked poultry meat, products and eggs. +

+

+ UK researchers announced on Thursday (1/13) that they have genetically engineered a chicken which prevents shedding of the bird flu virus following infection. The chickens express a small RNA that competitively bind to the virus’s RNA polymerase preventing the virus from replicating. The researchers noted that while the birds themselves still get sick, they no longer shed virus. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . An 11-year-old girl died from H5N1 bird flu in Luxor governorate on December 25. +

+

+ A 25 year-old woman from Qena governorate developed symptoms on December 19 and was admitted to the hospital on December 27. She died on December 29. Case investigation revealed that she had contact with poultry. +

+

+ A 27-year-old man in Ismalia governorate has tested positive for H5N1 bird flu. He developed symptoms on December 23 and was admitted to hospital on December 28. According to Ministry of Health Spokesperson Abdel Rahman Shahin, he is being treated in a hospital and is in stable condition. Investigations into the source of infection are underway. +

+

+ Egypt's Health Ministry reported the first death from bird flu in Egypt in 2011. A 40-year-old man died of H5N1 bird flu in al-Daqhalia Governorate on January 2. He developed symptoms on December 25 and was admitted to hospital on December 30. He was known to have contact with poultry. Laboratory tests have confirmed H5N1 bird flu virus. +

+

+ A 56 year-old woman from Sharkia governorate developed symptoms on December 22, was hospitalized on December 23, and received treatment with oseltamivir. She was discharged from the hospital on December 30 in stable condition. Investigations into the source of infection are underway. +

+

+ On January 13, the Ministry of Health announced that a 10-year-old boy from Giza was confirmed to have H5N1 bird flu. The patient developed symptoms on January 5 and was hospitalized on January 8. He is in a stable condition. Investigations suggest that the boy may have contracted the disease from exposure to poultry. The case was confirmed by testing at the Egyptian Central Public Health Laboratories. +

+

+ Of the 120 human H5N1 cases confirmed to date in Egypt, 40 have been fatal. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_01_24.html b/data/flu-report-html/usgs_avian_flu_report_2011_01_24.html new file mode 100644 index 0000000..01d3941 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_01_24.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, January 21 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+ . A spokesman for the Agriculture, Fisheries and Conservation Department (AFCD) reported that an oriental magpie robin found dead in Yuen Long on January 17 has tested positive for H5 bird flu. Further tests are being conducted to confirm the result. The Mai Po Nature Reserve (MPNR) and three chicken farms are within three km of the refuse collection point where the bird was found. AFCD staff inspected the farms and found no abnormal mortality or symptoms of bird flu among the chickens. These farms will be put under enhanced surveillance; the MPNR will remain open to the public but existing precautionary measures will be enhanced. The AFCD will issue letters to farmers, pet bird shop owners, license holders of pet poultry and racing pigeons reminding them that proper precautions must be taken to prevent the spread of bird flu. They will also conduct frequent inspections of farms and markets and continue their surveillance of wild birds. +

+

+ + Japan + + . A total of 36 birds, including 22 hooded cranes, 4 white-necked cranes, and 10 wild ducks of unspecified species, were found dead in Izumi Crane Park between December 18 and January 18. A total of 6 dead hooded cranes, including one that was reported on Dec 22, 2010, have tested positive for H5N1 bird flu. There have been no signs of any accelerated spread of the infection such as massive deaths of wild birds or a sudden increase in the number of weak birds in the sanctuary. A total of 1,197 bird feces samples collected in the sanctuary between December 25 and December 27 were negative for bird flu. +

+

+ On December 19, Hokkaido University confirmed that isolates from two of the seven dead tufted ducks found in Fukushima prefecture tested positive for H5N1 bird flu. The ducks were collected at a water reservoir in Koriyama city from January 4 to January 10 and tested at the National Institute for Environmental Studies in Tsukuba, Ibaraki prefecture. The prefecture set up a response center on January 19 and began sending inspectors clad in protective suits to 59 poultry farms in a 10km radius area that includes neighboring towns. The inspectors are interviewing farmers, looking for signs of contagion, such as changes in the death or egg-laying rates of chickens, and checking that farms have anti-contagion measures in place (such as nets to keep out wild birds) and supplies of disinfectant on hand. Nearby roads are being disinfected to prevent possible contagion from bird droppings, and inspectors are watching for bird corpses in the areas where the ducks migrate. The reservoir where the duck corpses were found has been disinfected, and the prefecture is stepping up observation for wild birds in agricultural water reservoirs in the city. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . The village of Sidomakmur in the sub-district of Way Panji in Lampung Province has been named a bird flu endemic area since 17 chickens and 4 swans died there suddenly. Rapid tests by the Livestock Services confirmed bird flu. +

+

+ Fifty percent of the Indramayu district inWest Java province was named a bird flu endemic area. Within last two weeks there have been several bird flu cases. The virus is considered endemic in 18 out of the 31 subdistricts. According to Nanang Hidayat, the Head of Distankan Kabupaten Indramayu, the crucial steps to suppress loss are to enhance disinfection, vaccination and public socialization. +

+

+ + Myanmar + + . Thousands of chickens have been culled in western Myanmar after health officials detected an outbreak of the H5N1 bird flu. Government newspapers announced the outbreak of the virus on January 17 and said that measures had been taken to curtail the spread, including a ban on the sale of chickens and eggs in Arakan state. Around 10 farms close to Lathamar village in Arakan state have been affected, although one farmer reported that all farms within a 1 km radius around the village must be treated. “Some of the farms there have around 2,000 chickens and some around 1,000,” said the farmer. “The chickens were killed and then buried in a six-foot deep hole in the ground. The farms were sprayed afterward.” He added that nearby farms are vaccinating their poultry in case the disease spreads. +

+

+ + South Korea + + . From January 6 to 14 there have been disease outbreaks on 23 farms in South Korea. Four of the farms are located in Gyeonggi-do province, eighteen in South Jeolla province, and one in Chungcheognam province. There have been a total of 20,307 cases out of 702,820 susceptible birds and 20,297 have died. The remaining birds have been culled to prevent the spread of the disease. Farmers notified authorities of suspected cases and samples tested at the National Veterinary Research and Quarantine Service were positive for H5N1 bird flu. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . On January 19, Dr. Abdel Rahman Shahin, spokesman for the Egyptian Ministry of Health, reported that a new human case of H5N1 bird flu has been discovered. An 18-month-old child in Alexandria governorate was admitted to a hospital and is suffering from high fever, cough, and febrile convulsion. The child was given Tamiflu and is now in stable condition. The patient had been exposed to sick poultry. + + (more... + + ) +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_01_28.html b/data/flu-report-html/usgs_avian_flu_report_2011_01_28.html new file mode 100644 index 0000000..20ce8c0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_01_28.html @@ -0,0 +1,2101 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, January 28 +

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+ + H5N1 in Wild birds + +
+ Ecologists and epidemiologists have been concerned about the role of migratory animals in the spread of disease particularly the possibility that migrating flocks of birds carry H5N1 bird flu into new areas and spread to humans. It has generally been thought that migration would increase the risk of disease spread, but a recent review paper suggests that migrating animals may actually help to keep highly pathogenic diseases in check. Birds that migrate across continents tend to have a higher viral load than those that stay at home year round, but for some birds migration might help to avoid the more virulent pathogens that can accumulate in one environment. Furthermore some sick animals are not able to travel as far as healthy ones, which can reduce the spread of infections. For instance, a 2007 study showed that Bewick's swans (Cygnus columbianus bewickii) infected with strains of avian flu viruses migrated later in the season and traveled shorter distances than healthier birds. By understanding these disease dynamics, researchers will be better able to suggest methods for reducing potential pandemics. However, human activities have affected migration patterns; less available land and more impediments to movement, such as fragmented habitat, cause more animals to end up in a few crowded stopovers like Delaware Bay or end their migration early, leaving fewer opportunities to escape local infection or leave the sick behind. Climate change has already changed caused migration routes to shift into new areas and seasons, likely changing the pathogens that affect migrating animals. +

+

+ + Hong Kong + + . A spokesman for the Agriculture, Fisheries and Conservation Department reported on January 21 that a large-billed crow found in Tai O, Lantau Island was positive for H5N1 bird flu. The carcass was collected on January 18 in a highly decomposed state and many tests were performed before bird flu was confirmed. The spokesman said the large-billed crow is a common resident bird in Hong Kong and there were no poultry farms within three kilometers of where the dead bird was found. All relevant government departments remain highly vigilant and are strictly enforcing preventive measures against avian influenza, such as reinforcing health education and striving to deter illegal imports of poultry and birds into Hong Kong. +

+

+ An oriental magpie robin (Copsychus saularis) found dead on Jan 17 at the Fairview Park was confirmed to be infected with H5N1. The species is also a common resident in Hong Kong. The on-going intensive surveillance of poultry farms, pet shops and poultry markets has not detected H5N1 in these sectors. +

+

+ + Japan + + . A third tufted duck (Aythya fuligula) found dead in Fukushima Prefecture has been confirmed positive for H5N1 bird flu, according to a report by the prefectural government on January 20. The Environment Ministry dispatched a fact-finding team to the northeastern prefecture January 21, believing the virus detected in Fukushima is related to the virus discovered in a wild duck in Hokkaido last October. Three whooper swans, a northern pintail and a duck of Aythya species collected from the wetland in northeastern Hokkaido has tested positive for H5N1. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . In Tambelang, Bekasi, West Java, H5N1 bird flu has killed 600 commercial and 52 backyard chickens. Laboratory tests by the Livestock Service Bekasi confirmed bird flu. The dead chickens have been burned and buried and their cages have been disinfected to prevent the spread of the disease. +

+

+ Within the month of January, around 200 backyard chickens in the Subdistrict of Sambutan and in Sungaipinang, Samarinda, East Kalimantan died from H5N1 bird flu. It is thought that the disease is coming from outside Samarinda, possibly from Mugirejo, through backyard chickens brought in by locals. +

+

+ + Japan + + . On January 23, 20 chickens were found dead on a farm in Miyazaki prefecture, one of the top poultry producers in the country, and a simple examination of 6 of the birds found that 5 were infected by the H5N1 virus. Plans are to cull around 410,000 birds to prevent the spread of the disease. Over the weekend 10,200 birds were culled after 36 birds died on a second farm located 8.5 km away and highly pathogenic avian infuenza H5 has been detected. The government has ordered all birds and eggs within 10km of the farms to be destroyed and has agreed to send 170 members of the Ground Self-Defense Force to help with the process. The chickens culled over the weekend were incinerated, but 410,000 birds are too many for incineration, ¬so the carcasses will be buried instead. +

+

+ According to the agriculture ministry and the Kagoshima prefectural government, a strain of the highly virulent bird flu was detected on January 26 in chickens at a poultry farm in Izumi, Kagoshima Prefecture. The prefecture culled 8,600 chickens at the poultry farm and ordered other farms within a 10-km radius to refrain from transporting chickens and eggs. On January 25, the farm reported to the prefecture's livestock hygiene service center that birds were showing signs of infection. Local government officials conducted preliminary testing for avian flu on 9 chickens, including dead birds, and 8 tested positive for bird flu. According to the farm, the chickens started dying around January 20 and a total of 160 had died by January 25. The prefectural government conducted genetic testing Tuesday evening and detected the highly pathogenic H5 strain of the bird flu virus in the farm's dead chickens early on January 26. +

+

+ Following confirmation of the infection, the prefecture started a mass cull of the chickens and it was completed the same morning. The farm is located less than 2 km from the largest crane overwintering area in the country. +

+

+ Aichi Prefecture. A fifth poultry farm may be affected with H5N1. 450 chickens have died over 4 days at the egg layer farm and have tested positive for avian influenza. +

+

+ + South Korea + + . The Ministry for Food, Agriculture, Forestry and Fisheries confirmed two new bird flu outbreaks late on January 24, one involving an egg-laying chicken farm in Sangju, North Gyeongsang, which had not been affected by bird flu in the past. All 201,000 chickens at the Sangju farm will be culled along with 8,300 ducks at a farm in Icheon, Gyeonggi. +

+

+ The Ministry for Food, Agriculture, Forestry and Fisheries reported that two new outbreaks of bird flu have been confirmed at a chicken farm and a pheasant farm in Pyeongtaek, about 70 km south of Seoul. All 25,000 chickens and 2,000 pheasants on the properties have been culled as a precautionary measure. Counting the new cases, the country has reported 40 outbreaks since the first was confirmed on December 31 and more than 5.15 million birds have been culled so far. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 33-year-old resident of Taruko Kuranji is being treated for suspected bird flu in the isolation unit of M Djamil hospital in Padang. The patient has been treated since January 19 and his condition is improving. He was admitted to hospital because of coughing and a runny nose within days of the chickens reared in his house suddenly dying. He buried the dead chickens without reporting the case to Health Service. The hospital is still awaiting laboratory results for bird flu confirmation. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_02_08.html b/data/flu-report-html/usgs_avian_flu_report_2011_02_08.html new file mode 100644 index 0000000..ae7b18c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_02_08.html @@ -0,0 +1,2090 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, February 8 +

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+ + Japan + + . Bird-related events nationwide are being cancelled as a precaution against the spread of bird flu. At least 28 institutions including zoos and aquariums have cancelled events. Some non-animal events such as a marathon where the route would have brought the runners and spectators near areas where wild birds are have been cancelled. In many places people have been asked not to feed birds and animal caretakers are working on strategies to protect rare birds like Japanese crested ibises. +

+

+ Ornithologists suspect that bird flu broke out in Japan because a wave of extremely cold weather this winter forced birds that usually winter in Korea south to Japan. "The spread [of avian flu] may have become even greater as a result of these birds arriving in this nation after migrating through such highly virus-dense areas as Siberia, China and Mongolia," said Hiroyoshi Higuchi, a professor of ornithology at the University of Tokyo. So far, cases of bird flu have been found in nine prefectures and many birds have been culled, but officials are uncertain about what to do to prevent the spread of the disease in wild birds. They are particularly concerned that common wild birds will spread the disease to rare species like the oriental white stork or the red-crowned crane, or that some infected birds among a rare population like the white-headed crane will spread the disease to others. "Trying to catch [red-crowned cranes] and moving them to a safety zone would produce the opposite of the desired effect. Doing so would turn them away," an Environment Ministry official said. "All that can be done is to swiftly find and collect the bodies of cranes that have died of the flu and those that have grown weak because of the disease." According to the ministry, there are 33 kinds of wild birds at high risk of infection, including wild ducks, crows and cormorants. Such birds inhabit all parts of the country." Currently, the flu has not yet affected any wild birds that live in Japan throughout the year. It would be difficult for the virus to exist [in the nation] from the spring onward, as temperatures of lakes and marshes begin to rise," Tsuyoshi Yamaguchi, a professor at Tottori University, said. +

+

+ + H5N1 in Wild birds +
+ Japan +
+ . This winter H5N1 bird flu has been spreading through Japan at an unprecedented rate. The route of infection has not been established in all cases, but it is highly likely that migratory birds from the north were carriers of the infectious disease. The outbreaks in Kagoshima and Shimani prefectures both took place near wintering grounds of migratory birds. The disease has a ten day incubation period in wild birds allowing them to travel great distances before they become ill. It is thought that small birds became infected from the droppings of migratory birds and carried the disease to the farms. The origin of the outbreaks in Aichi prefecture has not yet been determined. +

+

+ In Tottori prefecture, further testing confirmed H5N1 in a tufted duck and a hooded gull found ill last month. No signs of infection have been found in nearby poultry farms. Detailed tests in Hokkaido confirmed H5N1 in a whooper swan that had been found dead in mid-January. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . Around 8,000 chickens from a poultry farm in Kishoreganj district infected with H5N1 bird flu have been culled. The carcasses of the birds were buried on February 3 under the supervision of the district livestock department. The bird flu infection was confirmed when the livestock department sent a sample of the tissue to the Central Diseases Investigation Laboratory in Dhaka on February 2 after some of the chickens of the farm had died. The farm owner said the culling caused him a loss of around Tk 1.4 million. "However, the government has assured me of providing Tk 150 for each chicken, which will help me recover my losses a little bit." +

+

+ Indonesia. An outbreak of H5N1 bird flu in Jambi province that caused the deaths of at least 4,164 chickens in Kerinci regency was reported on February 2. "To prevent spreading disease, Animal Husbandry Division of Kerinci regency is now working hard to supervise people and to spray disinfectant," said Secretary of Animal Husbandry Division of Kerinci regency, Igor. Head of Animal Health Division of Kerinci regency, Ariyan, admitted that there are still many villagers who do not want to destroy their chickens. "However, we keep supervising them," she said. +

+

+ Outbreaks of H5N1 bird flu in Prabumulih and Palembang in South Sumatra have led municipal governments to call for the mass culling of sick animals. The outbreak came as a shock after many thought the disease had been successfully curbed over the last several years. Prabumulih municipal Horticulture, Agriculture, Husbandry and Fishery (PPKPP) Agency chief R.A. Hanunah said, “At this moment we’re continuing to conduct dissemination activities, especially in the affected areas.” She urged local residents to keep their poultry in sheds and rather than allowing them to roam freely through neighborhoods. This will make it easier to watch the animals for signs of disease and to avoid transmission of the virus to humans. The agency undertook additional control measures such as disinfecting poultry sheds in endemic areas and culling eggs laid by sick birds. Palembang municipal Agriculture, Fishery and Forestry Agency head Sudirman Teguh said at least 25 birds have died from avian flu in the municipality. We have conducted follow-up measures by expanding the mass cleaning activities to a radius of 1 kilometer,” he said, January 31. He has also created a task force to prevent the flow of birds into the area from other cities. +

+

+ + Japan + + . The Miyazaki Prefectural Government reported on February 1 that 191 birds had died at a farm in Miyazaki city. Of the 7 birds tested, 6 were positive for H5N1 bird flu in a preliminary exam. Chickens in two more locations in Miyazaki prefecture have tested positive for H5N1 bird flu according to a report on January 29. A Nobeoka poultry farm found six of its chickens had died recently, while a Kawaminami farm had more than 400 chickens die after exhibiting bird flu symptoms. The local government has decided to cull about 92,000 birds at the Kawaminami farm and conduct a detailed investigation. Meanwhile, all 31,000 chickens from poultry farm in Tsuno and its affiliated meat-processing center were culled after 186 chickens shipped from the farm were found dead January 27. H5N1 has been confirmed from the Tsuno birds. A fourth location in Miyazaki prefecture was reported positive for H5N1 bird flu on January 31. Of 90 birds found dead at a farm in Takanabe five were tested and four were positive for bird flu confirming the season’s sixth outbreak of bird flu in the prefecture and the ninth in the country. On January 31, officials started culling all 40,000 chickens on the farm and announced plans to impose a ban on transporting chickens or eggs from farms within a 10 km radius. For the time being the Japanese government has asked Miyazaki prefecture to report the number of birds on poultry farms that die each day. The prefectural government was found Friday to have allowed a company affiliated with the farm in the city of Miyazaki, the first to have an outbreak, to carry out on-the-spot inspections on its behalf last year. Inspections by the central government after the outbreak showed a number of holes in the farm’s bird net, which is intended to prevent wild birds from entering the poultry houses. The Miyazaki prefectural government said that its own sanitary officials were only able to check one-fourth of the 984 poultry farms with 100 chickens or more last year due to a shortage of staff. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . Dr. Abdel Rahman Shahin, spokesman for the Ministry of Health, announced that a new human case of H5N1 bird flu was identified on January 26. A 7-year-old child residing in Gharbia governorate was admitted to the hospital on January 20 for fever, sore throat, cough, and muscle pain. He had been exposed to poultry and was suspected of having contracted bird flu. The patient was treated with Tamiflu and is stable condition. The case was confirmed by the Egyptian Central Public Health Laboratories and is the 122nd human case of bird flu in Egypt to date. +

+

+ + Iraq + + . A source in the Department of Health in Baghdad reported on January 20 that two young girls had died from H5N1 bird flu. A medical source said that the girls died from the virus and because their parents did not bring them in for treatment until the virus was advanced. The Director of General Health in Baghdad, Ihsan Jaafar, reported the capital has had 19 cases of bird flu since the beginning of January and that some cases are controlled but other patients are in critical condition. The Federal Ministry of Health fears that the disease will spread in remote areas far from health facilities. With regard to the possibility of reducing the incidence of bird flu Jafaar added that “the only solution is awareness.” There has been no independent confirmation of this report. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_02_11.html b/data/flu-report-html/usgs_avian_flu_report_2011_02_11.html new file mode 100644 index 0000000..5d00800 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_02_11.html @@ -0,0 +1,2099 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Feb 11, 2011 +

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+ News Update, February 11 +

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+ + H5N1 in Wild birds +
+ Japan +
+ . Nagasaki prefecture said February 5 that it has detected H5N1 bird flu virus from a mandarin duck that was found dead at a pond in the city of Nagasaki together with two other ducks on February 4. Another duck found dead in the same pond on January 31 had also tested positive for bird flu. The National Institute for Environmental Studies is conducting a close examination on the sample. +

+

+ + South Korea + + . According to a statement from the South Korean government on February 7, migratory wild birds are primarily responsible for the most severe outbreak of bird flu to hit South Korea. Seoul confirmed its first outbreaks of the virulent H5N1 strain on Dec 31 after some poultry farms reported sudden deaths of animals earlier in the month. Since then, more than 5.41 million birds have been culled to prevent the spread of the disease. Joo Yi-seok, head of the animal disease control bureau at the National Veterinary Research and Quarantine Service, said, "Direct contact with infected wild birds and indirect contamination caused by people and vehicles stepping on bird droppings may have triggered 22 of the 40 confirmed cases, with the rest involving the virus being spread inadvertently by contaminated bird feed and rice husks used in coops." The strains of bird flu detected in South Korea were nearly identical to those in migratory birds from Mongolia and China. He added that since the birds remain in the country until spring, there might be outbreaks of bird flu through April and urged people to prevent wild birds and rodents from coming into contact with their poultry. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . Officials in Bangladesh have culled 46,387 birds following the re-emergence of bird flu last month. Bird flu was found on 16 commercial farms in the first week of January. An official stated, "A total of 65,481 eggs were also destroyed during the same time." As a result of these outbreaks, the Fisheries and Live Stock Department has strengthened its surveillance to contain the further spread of H5N1 bird flu virus. "We've taken special steps like motivating farmers to adopt preventive measures since the disease found to reemerge last month to contain its outbreak," Director of the government's Influenza Preparedness and Response Project, Nazrul Islam, said. He added that field officials have been trained in proper culling and disposal techniques and that they have asked border authorities to be more vigilant because there have been recent reports of bird flu in neighboring countries like India and Nepal. Officials expect that the outbreak will dwindle as winter comes to an end. +

+

+ + Cambodia + + . An outbreak of H5N1 bird flu in Kandal province was confirmed on January 29 after 48 birds died in a village. An investigation team from the National Veterinary Research Institute of the Department of Animal Health and Production conducted an investigation in the Prek Poung village and carried out surveillance in neighboring villages from January 31 to February 4. Starting on January 30 they culled 174 chickens in the area to prevent the disease from spreading. Other control measures such as movement control within the country and disinfection of the area have been enacted. The origin of the outbreak is unknown. +

+

+ + Hong Kong + + . A spokesman for the Agriculture, Fisheries and Conservation Department (AFCD) said on February 7 that a duck carcass found on a beach on February 3 in Tai O was confirmed to be H5N1 positive after laboratory testing. There were no poultry farms within a 3km radius of where the carcass was found and AFCD investigations have not found any backyard poultry in the area. They will continue to monitor the situation and conduct inspections of the area. All relevant government departments will continue to remain highly vigilant and strictly enforce preventive measures against avian influenza. AFCD has phoned poultry farmers to remind them to strengthen precautionary and biosecurity measures against avian influenza and sent letters to farmers, pet bird shop owners, licence holders of pet poultry and racing pigeons reminding them that proper precautions must be taken. They also plan to conduct frequent inspections of poultry farms and the wholesale market and continue surveillance of wild birds. "People should avoid personal contact with wild birds and live poultry and their droppings. They should clean their hands thoroughly after coming into contact with them,” the spokesman said. +

+

+ + Indonesia + + . Around 20,000 birds has died in West Kalimantan province. Samples of dead chicken tested positive H5N1 bird flu. Head of Livestock Service and Animal Health of West Kalimantan, Abdul Manaf Mustafa said that the virus presumably entered West Kalimantan from other islands, as there are many local ports that are difficult to inspect. To prevent the further spread of the virus, the Livestock Service isolated Mepawah area by enhancing monitoring and applying bio-security in two locations, inspecting the transportation of poultry and poultry products, and disinfecting transportation vehicles. +

+

+ + Japan + + . Miyazaki prefecture reported on February 5 that birds found dead on a poultry farm in Takachiho were positive for H5N1 bird flu, the 12th case in Japan so far this winter. Birds were found dead on February 3 and 4, and all 10 of the 94 dead birds sent for testing were positive for bird flu. The farm raises about 40,000 broiler chickens, and the local government started culling about 57,000 chickens at the affected farm and other related farms. On February 6, Miyazaki prefecture also began to cull 30,000 chickens on a farm in Kadogawa with suspected H5N1 and finished culling 88,000 chickens on an affected farm in the town of Tsuno. They have also placed a ban on the transport of chickens and eggs within a 10 km radius of each farm. +

+

+ Oita prefecture finished culling about 13,000 chickens at a poultry farm which had tested positive for H5N1 and meat-processing center on February 3. About 110 people, including animal doctors and prefectural government officials, culled and buried about 8,100 chickens from February 2, while an additional 100 people joined the task of disinfecting the area. Approximately 5,000 additional chickens were culled at a meat-processing center in Usa because around 2,000 chickens had been brought to it from the infected farm. The officials said no suspected infections were found in visual examinations and added that they will wait to see the results of blood tests and other exams expected to come out on Saturday night or later. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . A five-year-old girl from Phnom Penh’s Preak Leap village in Russei Keo district has died of respiratory complications after contracting H5N1 bird flu, according to a joint statement from the Ministry of Health and the World Health Organisation on February 7. According to her family, the girl fell sick on January 29 and died February 3, in what is the first recorded case of bird flu in humans in Cambodia this year. 200 chickens has died and 700 more were sick in the village, including at least 20 that died in the girl’s house. Philippe Buchy, head of the virology unit at Phnom Penh’s Pasteur Institute, confirmed the case of bird flu, adding that the institute was conducting further tests. “We are always concerned if the viruses have a higher capacity to mutate or to become [drug] resistant, so we are testing this virus,” he said. The girl contracted the disease by eating meat from an infected chicken. Her father does not believe that she died of bird flu. Nima Asgari, a public health specialist at the WHO, said the organization has been trying to increase public awareness about bird flu. “It is very difficult to change behaviour,” he said, “the population as a whole knows about the virus, they just don’t act on it. Translating that awareness into action is where we need to do more work.” +

+

+ + Indonesia + + . A 27-year-old man from Banten province is being treated in bird flu installation unit of Tangerang regional hospital. It is suspected that he has bird flu because of his high fever. His family brought him to the hospital on February 3 and the hospital has yet to release a statement regarding the case. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_02_22.html b/data/flu-report-html/usgs_avian_flu_report_2011_02_22.html new file mode 100644 index 0000000..bc768a7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_02_22.html @@ -0,0 +1,2093 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+

+ + H1N1 + + . A 6-year-old domestic cat in Wisconsin tested positive for H1N1 flu virus. This is the first confirmed case of the disease in a pet in the United States since January 2010. The cat and a 10-year-old cat from the same household were taken to a veterinary emergency hospital for respiratory distress. The second cat tested negative for the disease, but it is thought that test returned a false negative because the shedding period for influenza viruses is short. Both cats were euthanized after treatment failed to improve their condition. The owner had been sick with flu symptoms before the cats became ill. The AVMA encourages pet owners to monitor their pet’s health closely and take them to a vet for any signs of illness. +

+

+ + H5N1 in Wild Birds +
+ Japan +
+ . Five outbreaks of bird flu in wild birds Japan have recently been reported to OIE: two in Miyazaki, one in Hokkaido, one in Nagasaki, and one in Yamaguchi prefecture. A total of 6 birds were found dead including 3 mandarin ducks, 1 peregrine falcon, 1 whooper swan, and 1 tufted duck. The origin of the outbreak is unknown. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . A special team of livestock officials culled around 1,000 birds on a private farm in Gaibandha on February 12 after bird flu was detected. A few poultry from the farm had died recently and a livestock officer collected samples from dead poultry and sent them to Gaibandha Regional Animal Disease Diagnosis Centre where they tested positive. +

+

+ In Rajshahi, around 8,600 chickens on a farm were culled and dumped on February 16 following the detection of bird flu. The owner of the farm informed livestock officers a few days earlier that chickens on his farm had been dying. A sample from an infected chicken sent to the Central Diseases Investigation Laboratory (CDIL) in Dhaka tested positive for bird flu. +

+

+ + India + + . The High Security Animal Disease Laboratory in Bhopal conducted tests and confirmed an outbreak of H5N1 bird flu at a state duck and poultry farm in Tripura on February 16. The farm housed 4,293 birds and 2,198 of those have already died from the disease.. The source of the outbreak is still unknown, but an epidemiological investigation is ongoing. All domestic birds within a 3-km radius are being culled and the owners are being compensated. An intensive surveillance campaign that includes closure of poultry markets, prohibition on the sale and transportation of poultry products in the infected zone, and disinfection of affected premises has been enacted within a 10-km radius of the farm. Poultry owners who follow this protocol will be allowed to restock. +

+

+ + Indonesia + + . A total of 50 chickens from 13 households in East Java have died. The Livestock Service examined the dead chickens, which had been buried, and the carcasses tested positive for H5N1 bird flu. Afterward, local poultry were disinfected. So far no human cases have arisen, but the Livestock Service requested people to report any sign of illness such as chills or high fever. +

+

+ + Japan + + . According to a report from prefectural officials on February 14, chickens from a farm in Aichi prefecture tested positive for H5N1 bird flu. The farm reported early on February 14 that about 20 chickens had died and four of the five dead chickens had tested positive for bird flu in a preliminary test. The local government started culling all 17,500 chickens at the farm and banned transportation of around 900,000 chickens at 18 farms within a 10 km radius. An H5N1 bird flu infection case has been confirmed in more than 160 chickens recently found dead at a poultry farm in Mie Prefecture, prefectural officials reported on February 16. After genetic tests showed that the birds were infected with H5 bird flu, officials decided to cull about 67,000 chickens raised at the affected farm and prohibit the movements of chickens and eggs within a 10 km radius of the farm. +

+

+ + South Korea + + . On February 13, two additional bird flu outbreaks were confirmed in areas near Seoul despite nationwide efforts to stem the spread of the disease. The farm ministry said that the two new locations, a medium-sized duck farm and a small poultry farm that raises chickens and ducks, had reported symptoms earlier in the week. All 8,400 birds on the two farms have been culled and buried and other bird farms within a 3-km radius are being checked for infections. Since December 31 when the first two avian influenza outbreaks were confirmed, cases have been reported in five provinces and 5.45 million birds have been destroyed at 249 farms so far. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . A 43-year-old agricultural worker from Monoufia governorate was hospitalized on February 8 for a high fever and joint pain and died on February 9 from H5N1 bird flu. Clinical samples were obtained from his family to determine whether they were exposed to the virus and his house has been treated with disinfectant. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_02_28.html b/data/flu-report-html/usgs_avian_flu_report_2011_02_28.html new file mode 100644 index 0000000..23e2908 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_02_28.html @@ -0,0 +1,2078 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds +
+ Japan +
+ . OIE recently reported 17 new cases of H5N1 bird flu in wild birds in Japan; 1 in Nagasaki, 2 in Hokkaido, 1 in Hyogo, 1 in Kyoto, 1 in Tokushima, 3 in Oita, 1 in Kagoshima, 4 in Miyazaki, 1 in Fukushima, 1 in Tochigi, and 1 in Yamaguchi district. A total of 19 dead wild birds tested positive for bird flu between February 7 and February 21; 1 black swan (Cygnus atratus), 5 peregrine falcons (Falco peregrinus), 1 tundra swan (Cygnus columbianus), 5 mandarin ducks (Aix galericula), 1 hooded crane (Grus monacha), 1 little grebe (Tacybaptus ruficollis), 1 grey heron (Ardea cinerea), 1 Ural owl (Strix uralensis), 1 mute swan (Cygnus olor), 1 whooper swan (Cygnus cygnus), and 1 greater scaup (Aythya marila). The source of the outbreak is unknown. +

+

+ + UK + + . Bird lovers in Stratford-upon-Avon requested an urgent investigation after 16 swans died in just 6 weeks on the River Avon. Wildlife experts are calling for the carcasses to be tested, fearing that the birds may have died from bird flu. Swan rescue volunteer and former Stratford Mayor Cyril Bennis said: “This is the worst case of deaths I’ve seen in 30 years of working with swans in Stratford. I picked up three this week; two from Stratford and one from Luddington and it was quite distressing. I’ve collected all the dead birds, some young and some old; many have been very thin. Is it lead poisoning or is it Bird Flu? We just don’t know – but the problem is not going away. I think we are looking at a virus and have called for the river to be checked but all this costs money.’’ He added that the swan population on the river is down to 35 and cannot sustain this many deaths. Veterinarians at the Arden Forest Veterinary Group have been investigating, but the carcasses they have received have been too degraded for a successful post-mortem. They are calling for residents to report any dead swans so that professionals can retrieve them safely and quickly. Wychbold Swan Rescue has 150 swans at a nearby rescue center and has put release plans on hold until the cause of the recent deaths has been determined. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . About 300 birds, including chickens and ducks, have died from H5N1 bird flu in West Java province, since mid-February. The Chief of Banyuresmi, Wawan Ridwan, said the birds had died suddenly without any sign of sickness. Bird flu was confirmed by rapid testing and plans have been put in place to cull the remaining birds in the area to prevent the disease from spreading. +

+

+ Hundreds of chickens in Riau and East Java provinces were reported dead on February 22. The outbreak in Riau is centered in the Meranti Island regency and Pekanbaru city. On February 4, the first chickens were found dead and the disease has since spread rapidly. The Pekanbaru Health Office chief, Dahril Darwis, said he deployed a team to monitor the outbreak and distributed doses of tamiflu, used to suppress and decrease transmission of the virus, to local community health centers. On Meranti Island, the administration ordered a mass culling of local poultry to stop the spread of the virus. +

+

+ Authorities declared avian flu “endemic” in 12 districts of Pacitan, East Java, after a dozen outbreaks were reported in the regency. Pacitan Food, Crops and Animal Husbandry Office Head Fatkhur Rozi said the most recent outbreak in the regency was discovered in January. “Nearly all districts in Pacitan were previously afflicted by avian flu. No area can be said to be safe,” Fatkhur said, as quoted by Antara news agency. The worst hit areas, he said, were the districts of Nawangan, Sudimoro, Donorojo, Kebonagung and Tulakan. According to the office, the number of dead chickens in each infected area ranged from 30 to 100, but the real numbers might be higher because many poultry deaths go unreported. Fatkhur said that the high number of avian flu cases in Pacitan could be attributed to local residents’ failure to follow safety procedures, “They frequently said they would join vaccination [programs] and clean their sheds after their hens were infected. But as soon as the problem was settled, the people went back to their old habits and didn’t bother with it again.” He added that the problem is that even though avian flu was declared endemic in Pacitan regency, the local administration did not earmark any special funds to fight it. +

+

+ + Vietnam + + . Four outbreaks of H5N1 bird flu were recently reported to OIE. The outbreaks took place in villages in Ca Mau, Lang Son and Nam Dinh provinces and on one farm in Kon Tum province. A total of 2,874 birds died and an additional 3,657 were culled from a susceptible population of 8,011. The possible sources of the infection include fomites (humans, vehicles, feed, etc.), illegal movement of animals, and the introduction of new live animals. Preventative measures such as quarantine, movement control, and disinfection of the premises have been enacted and there are plans to screen, zone, and vaccinate remaining birds. Infection with H5N1 was confirmed by the National Center for Veterinary Diagnosis. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . Provincial authorities in Banteay Meanchey fear an outbreak of H5N1 bird flu after a mother and child died from Takong village, Malay District and 7 other people were hospitalized in mid-February. Samples taken from the 19-year-old mother who died on February 12, and her 11-month-old son, who died on February 15, were sent to the World Health Organization for testing and H5N1 has been confirmed. The mother had traveled in a family group to Rokar Chor village, Prash Sdach district in Prey Veng province in early January. Keo Sopheaktra, director of Banteay Meanchey province’s health department, said the mother and son became sick after eating infected chicken. “They both had a fever, cough and difficulty breathing before they passed away.” He said seven villagers who helped clean the bodies for cremation were admitted to the Mongkol Borei district hospital after each developed a fever and cough. The Director of the Mongkol Borei district hospital, Ho Serey Vitthyu, said the seven are responding well to treatment. +

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+ + H5N1 in wild birds. + + Seven new cases of H5N1 bird flu in Japan were reported to OIE this week; 3 in Tottori, 1 in Hokkaido, 1 in Hoyago, 1 in Nagasaki, and 1 in Miyazaki district. A total of seven dead wild birds tested positive for bird flu between February 24 and March 3: 1 great crested grebe (Podiceps cristatus), 1 whooper swan (Cygnus cygnus), 1 peregrine falcon (Falco peregrines), 1 pochard (Aythya ferina), 1 tufted duck (Aythya fuligula), and 2 mandarin ducks (Aix galericula). The source of the outbreak is unknown, but wild birds are being screened for the disease. +

+

+ + H5N1 in poultry +
+ Indonesia +
+ . (Central) The Agriculture Service found that 8 of 11 chickens from a die-off in Solo, Central Java, tested positive for H5N1 bird flu. According to the Head of the Agriculture Service of Solo, Wenny Ekayanti, the birds died suddenly on February 21, and bird flu was confirmed by rapid testing. Following the incident, officials conducted control measures by burning dead chickens and disinfection of the area. +

+

+ On February 24, residents of Klaten, Central Java, disinfected H5N1-infected bird cages, using Virtox, a disinfectant provided by the Agriculture Service. This measure was taken to prevent the spread of avian influenza virus from resident-owned poultry that recently and suddenly died. To date, the Public Health Center has recorded a total 441 of 1,090 birds died from 26 households in the Dukuh Duwetan village; it is thought that the number would reach several thousand if dead birds from other areas were also included. +

+

+ (West) Last week, Livestock Service reported that H5N1 bird flu has spread to 5 sub-districts in Banyuresmi, West Java. The Head of Livestock Service, Hermanto, said that the five affected villages were Desa Karyasari, Banyuresi, Sukaratu, Sukamukti and Bagendit. To date, about 1,000 birds have died. Livestock Service attempted to do massive culling, as instructed by provincial government, to prevent the spread of the virus. +

+

+ Recently, new bird flu cases have been detected in 11 of West Java’s 26 cities and regencies. West Java Animal Husbandry Office Head Kusmayadi said Monday that the virus was spreading because of the unpredictable weather; however, health experts are blaming a lack of public awareness about the importance of cleanliness when handling poultry, in addition to the effects of climate change, +

+

+ + H5N1 in Humans +
+ Egypt +
+ . In the past week, the Ministry of Health of Egypt confirmed 3 new cases of human infection with H5N1 bird flu. The first case is a 26-year-old female from Dakahlia Governorate, who first developed symptoms on January 18 and was hospitalized on January 23. She has since recovered and was discharged on February 7. The second case is a 45-year-old man from Menofia Governorate who developed symptoms on January 20 and was hospitalized on January 26. He died on February 5. The third case is a 4-year-old boy from Damiata Governorate who developed symptoms on February 14 and was hospitalized on February 16. He is now in stable condition. The Egyptian Central Public Health Laboratories confirmed that investigations into the source of infection indicated that all three cases had exposure to poultry. +

+

+ + Indonesia + + . On February 11, the Ministry of Health confirmed H5N1 bird flu infection in a 26-year-old male resident of Kabupaten Karawang, West Java. The man died on February 8 after seeking medical care for symptoms on January 30. +

+

+ Other cases of avian influenza infection in humans are suspected in Indonesian provinces. On February 26, in Garut, West Java, a 7-year-old female infant was rushed to a hospital after she developed coughing, fever and breathing difficulty. She is currently receiving intensive medical care in the hospital bird flu isolation unit. In Indramayu, West Java, a family of four, including two children aged 6 and 7, have been hospitalized. The patients began to show flu-like symptoms after dozens of chickens died around their home; rapid testing showed positive H5N1 infection in those chickens. In Padang, West Sumatra, 10-month old and 6-year-old boys were admitted to the same hospital on February 26 and March 2, respectively. Both children developed high fevers after chickens died in the vicinities of their respective homes; both are currently being treated at the hospital as suspected bird flu patients. +

+

+ + Iraq + + . On February 25, Ihsan Jaafar, an official in the Iraqi Ministry of Health's Epidemic Disease Commission, reported that 142 cases of “avian flu (H5N1)” virus have been recorded in the country this winter. He said that the Ministry was concerned about the spread of bird flu in remote areas of the country, and that “Mountain areas and areas close to water are the most in danger of suffering a flu pandemic." The Director of Veterinary Services in Baghdad, Basem Adhadh, said that Jaafar’s report was highly erroneous, as the influenza strain concerned in Iraq is H1N1 and not the highly pathogenic H5N1 bird flu. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_03_15.html b/data/flu-report-html/usgs_avian_flu_report_2011_03_15.html new file mode 100644 index 0000000..bc83e56 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_03_15.html @@ -0,0 +1,2115 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in poultry. +
+ Bangaladesh +
+ . About 7,000 chickens from a poultry farm in Bhola District, Barisal Division, were culled following the detection of H5N1 bird flu. District livestock officer Pradip Kumar reported that samples from dead poultry were sent to the Barisal laboratory for testing on March 1, and bird flu infection was confirmed March 3. The livestock department, with the help of district administration, culled the chickens from Farit Poultry Farm at Charsamaiya in Bhola on March 4. +

+

+ It was reported on March 5 that around 2,000 chickens were culled in Gazipur and Noakhali, Dhaka Division, following the detection of H5N1 bird flu. Gazipur District livestock officer Mohammad Shamsur Rahman said that the bird flu infection was confirmed by the Central Diseases Investigation Laboratory in Dhaka by conducting tests on chickens from the Bushra Poultry Farm in Tarapara, Gazipur, that died on March 3. Following the detection of the virus, a direction was immediately passed to the Upazila livestock department to cull the infected chickens in a bid to stop the infection spread in the surrounding areas; in addition, around 1, 137 chickens were killed and 205 eggs were destroyed. +

+

+ Over the last few days, in Noakhali, about 600 chickens have died at the Shikha Agro Complex, Manikpur village under Sirajpur union. District livestock officer Abul Kalam said that bird flu infection was confirmed following the analysis of the tissue at the district laboratory and the regional diseases investigation laboratory in Feni. The local livestock department directed the farm owner to bury the dead chickens and it banned him from moving the chickens and eggs from the farm to another place. "We are waiting for directives from higher authorities to cull the infected chickens," said Kalam. +

+

+ + Hong Kong + + . Two new cases of H5N1 bird flu in chickens were reported to OIE this week, both involving badly decomposed carcasses. The first case was one carcass collected on January 25; then two chicken carcasses were collected on January 28. All three chickens were collected from the Lantau Island district at the shore of Tai O from unknown sources. The origins of the infections are currently unknown. +

+

+ + India + + . Tripura Animal Resource Development Department Joint Director Jyotirmoy Chakraborty reported that, since March 1, at least 400 birds have died at the Gandhigram, a Tripura government poultry farm. Chakraborty confirmed on March 6 that central government experts tested samples of the dead birds from the farm and found them positive for the H5N1 bird flu; he added that, for further confirmation, samples had been sent to Eastern Region Disease Diagnostic Laboratory (ERDDL) in Kolkata and the High Security Animal Disease Laboratory (HSADL) in Bhopal. At the time of Chakraborty’s statement, government officials said that, if the two reports also confirmed the bird flu infection, culling of birds from the farm would begin the following Monday. The Gandhigram farm case follows one that occurred last month in western Tripura, in which more than 6,000 ducks and poultry birds were culled. Since that event, Tripura has sounded a bird flu alert and intensified surveillance across the bordering state. The government has taken measures to check its spread in other areas, including a ban on the import of poultry birds, ducks and other poultry products from outside the state. +

+

+ + Israel + + . More than 40,000 turkeys were scheduled to be slaughtered March 8 at Kibbutz Rosh Tsurim in Gush Etzion after the H5N1 bird flu was discovered in one of the the three sheds. According to Veterinary Doctor Michelle Blaish, culling will not be carried out in other chicken sheds on the kibbutz because no abnormal activity was reported outside the one building. +

+

+ + Japan + + . About 33,000 broiler chickens were culled on March 6 at a poultry farm in the town of Kadogawa, Miyazaki Prefecture. Prefectural officials said the culling occurred after the 13th case of H5N1 bird flu in the prefecture was confirmed the previous day. Since January 22, 13 cases of bird flu have been confirmed at poultry farms in Miyazaki Prefecture and about 990,000 chickens have been slaughtered. +

+

+ + Myanmar + + . 1,800 new cases of H5N1 bird flu in Myoma Quarter, Tabayin District, , Sagaing, were reported to OIE this week. A total of 626 layer chickens from a pool of 6,700 susceptible birds died within five days of the outbreak being reported. The source of the outbreak is unknown. +

+

+ + Palestine + + . 2,000 new cases of H5N1 bird flu in Sealet al Harthieh, Jenin, West Bank, were reported to OIE this week. All 2,000 birds, 65-day-old turkeys from a farm, died within 3 days with some respiratory signs. The source of the outbreak is unknown. The turkey farm was the only one of its kind in the area; PCR testing showed that nearby farms were negative for the bird flu virus. +

+

+ + South Korea + + . 5 new cases of highly pathogenic H5N1 bird flu in South Korea were reported to OIE this week: an outbreak in Sangbong, Icheon city, Gyeonggi began on Feb 17; the one in Naesong, Yangsan city, Gyeonggi on Feb 24; an outbreak in Gwangdae, Yeonju district, Gyeonggi on Feb 23; the one in Banryong, Damyang district, South Jeolla on Feb 24; and the outbreak in Yongdong, Goheung district, South Jeolla on Mar 1st. A total of 205 chickens and 2,100 ducks tested positive for bird flu between March 3 and March 10. The source of the outbreak is unknown. In an effort to control the spread of the outbreak, poultry in the affected farms and in the area within 500-m radius from the affected farms were culled and buried, and disinfection and clinical surveillance in the area within a 10-km radius from the affected farms were intensified. +

+

+ A new case of low pathogenic H7N2 bird flu in Samdam, Iksan city, Jeolla, was reported to OIE this week. A total of 600 chickens tested positive for bird flu and were exterminated to control the spread of the outbreak. The source of the outbreak is unknown. +

+

+ The National Veterinary Research and Quarantine Service (NVRQS) confirmed a new case of H5N1 bird flu at a duck farm in the central part of the country on March 5. Tests showed that 12,400 birds at a poultry farm in Cheonan, 92 kilometers south of Seoul, were infected with the virus. This is the second case of highly pathogenic avian influenza reported in the country this month. The National Veterinary Research and Quarantine Service (NVRQS) also confirmed a new case of H5N1 bird flu at a chicken farm in Yongin, 50 kilometers south of Seoul, later in March. Tests showed the 200,000 of the birds at the large egg-laying farm were positive for the virus, making it the third case of the virus reported in the country this month. In both cases, all birds will be culled with quarantine authorities asking nearby farms to be vigilant on protecting their birds. +

+

+ + H5N1 in humans. +
+ Egypt +
+ . This week, the Ministry of Health of Egypt has confirmed four new cases of H5N1 bird flu infection in humans. The first case was a 32-year-old female from Sharkia Governorate who developed symptoms on February 10, was hospitalized on February 14, and died on March 3. The second case is a two-year-old boy from Kafr el Sheikh Governorate who developed symptoms on February 18 and was hospitalized on February 20. He is currently under treatment and is in good general condition. The third case is a 17-year- old female from Behira Governorate who developed symptoms on February 27 and was hospitalized on March 1. She is currently in stable condition. The fourth case was a 17-year-old female from Dakahlia Governorate who developed symptoms on February 24, was hospitalized on February 26 and died on February 28. In all four cases, bird flu infection was confirmed by Egyptian Central Public Health Laboratory, a National Influenza Center of the WHO Global Influenza Surveillance Network. The lab determined that all cases were exposed to poultry suspected to have avian influenza. +

+

+ + Indonesia + + . It was reported this week that M Djamil hospital in Padang, West Sumatera treated 8 patients suspected to be infected with H5N1 bird flu from January to March 2011. All patients reside around Padang city, and one is from Dharmasraya. Five patients tested negative for bird flu, while one patient was positive for the virus. Infection was confirmed via rapid testing. To date, three patients have been released from the hospital, and 5 are still under intensive treatment. +

+

+ A 15-year-old male resident of Desa Kuta Kabupaten (district) Babussalam, North Sumatera has been receiving treatment in the bird flu installation unit of H Adam Malik hospital since March 6. The patient’s father said that he developed a fever after a neighbor’s chickens suddenly died. The hospital collected the patient’s blood samples for laboratory examination. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_03_22.html b/data/flu-report-html/usgs_avian_flu_report_2011_03_22.html new file mode 100644 index 0000000..0d6d26d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_03_22.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in wild birds +
+ Japan +
+ . OIE recently reported 3 new cases of H5N1 bird flu in wild birds in Japan: 1 in Aomori and 2 in Shimane. These birds, 1 peregrine falcon (Falco peregrines), 1 pochard (Aythya ferina), and 1 tufted duck (Aythya fuligula), were all found dead between March 10 and March 17 and have tested positive for H5N1 bird flu. The source of the outbreak is unknown, but wild birds are being screened for the disease. +

+

+ + India + + . The mysterious deaths of some animals and birds at the Sepahijala Zoo over the past week have put authorities on alert after the detection of H5N1 bird flu at two government-run farms in western Tripura. Three leopards, one wild cat and 13 birds, including some extremely endangered species, have been found dead in the zoo’s enclosures. The Director of Sepahijala Zoo and head of the wildlife sanctuary, Ajit Bhowmik, said on March 13, “We have sent samples to state and national level laboratories” and that “no indication of avian influenza or swine influenza has been found.”  He added that “the disease might have been caused by some viral infection. We have taken preventive measures for the other animals and birds in the zoo.”  The Tripura government has since culled more than 16,000 ducks and poultry birds, and destroyed thousands of eggs and feeding material at both of the affected farms. +

+

+ + Taiwan + + . Researchers at the National Sun Yat-sen University urged farmers in central and southern Taiwan to reinforce the nets around their chicken ranches to prevent the invasion of cattle egrets, which they suggest could be major carriers and spreaders of the H5N1 bird flu virus.  According to Chang Hsueh-wen, a Biology professor at the University, long-term observations and studies by his team found that cattle egrets (Bubulcus ibis) were frequently lured to chicken ranches to catch insects that were attracted by chicken droppings.  Chang added that the cattle egrets tend to mix with other migratory birds at wetlands or water reservoirs in southern parts of the island, and that this allows the egrets to easily spread H5N1 bird flu viruses that can also infect human beings. +

+

+ + H5N1 in poultry +
+ Japan +
+ . On March 14, prefectural government authorities said that H5N1 bird flu infection was confirmed among chickens at a poultry farm in Chiba city, marking the first such case in the region.  A total of four birds were found dead at the Chiba farm on March 11 and 12, and a genetic test confirmed that four of seven birds checked were infected by the highly pathogenic strain of the virus.  On March 13, local authorities culled about 35,000 birds at the farm and restricted the movements of another 869,000 birds being raised within a 10-kilometer radius of the affected farm.  ''This is a very severe situation as damage from the huge earthquake is also serious,'' said Chiba Governor Kensaku Morita at a press conference, referring to the earthquake that recently struck northeastern and eastern Japan. +

+

+ OIE recently reported 119 new cases of H5N1 bird flu in Japan in three separate outbreaks between March 10 and March 17 (out of 373,000 total susceptible birds): 30 birds from a poultry farm in Miyazaki that tested positive for the virus on March 5; 67 birds from a poultry farm in Nara that tested positive for the virus on February 28; and 22 birds from a poultry farm in Mie that tested positive for the virus on February 26. All cases of bird flu were confirmed by rapid testing.  Since the confirmations of the infections, mandatory movement restriction has been enforced within 10 km of each affected farm; in addition, all poultry at each of the farms were destroyed. +

+

+ + H5N1 in Humans +
+ Bangladesh +
+ . The Institute of Epidemiology, Disease Control and Research (IEDCR) confirmed the first case of human infection of H5N1 bird flu in Dhaka on March 14. IEDCR Director Mahmudur Rahman said that infection was confirmed in a 13-month-old girl with a fever who visited an influenza surveillance center run jointly by the IEDCR and International Centre for Diarrheal Diseases and Research, Bangladesh (ICDDR,B). Rahman added that family members of the child were also examined, and that IEDCR was also examining the areas where the child visited with her parents this year.  The girl is currently undergoing treatment in IEDCR supervision. +

+

+ Two days later, the Ministry of Health and Family Welfare, Government of the People's Republic of Bangladesh, confirmed a second case of human infection with H5N1 bird flu in a 16-month-old girl from Kamalapur, Dhaka. The girl had a history of cough and fever (and subsequently recovered) and was admitted to the same influenza sentinel surveillance center on March 8. IEDCR Director Mahmudur Rahman said that this most recent case is not related to the earlier one.  "We are lucky that the strain (clade 2.2) of H5N1, which circulates in Bangladesh, is less virulent, so it causes less infection to humans," Rahman said, adding, "but we have to be careful as it has the potential to change into another class (2.1), which was highly infectious to humans.” The IEDCR is working on ascertaining the source of infection of the second baby.  The institution has urged the public not to panic, but to be aware of the disease and to take protective measures to prevent future outbreaks. +

+

+ + Indonesia + + . It was reported on March 11 that a resident of Nanggalo, Padang, was being treated in M Djamil hospital in Padang, West Sumatra, as a suspected bird flu patient. The patient developed a high fever and was admitted to the hospital after several chickens suddenly died within her neighborhood.  Her current health status has not been disclosed.  The hospital is currently treating eight other suspected bird flu patients; all of the patients’ conditions have improved since being admitted. The hospital will not release the patients until their disease statuses are confirmed by laboratory in Jakarta. +

+

+ On March 14, The Ministry of Health of Indonesia announced that laboratory tests confirmed two new, but unrelated, cases of human infection with H5N1 bird flu virus. The first case was a 2-year-old male from Depok City, West Java Province. He developed symptoms on February 3, was admitted to a hospital on February 6, and died that same day. Prior to his illness, sick and dead poultry were reported in his neighborhood.  The second case was a 31-year-old female from Bekasi City, West Java Province. She developed symptoms on February 23 and was admitted to a hospital on February 28, where she received oseltamivir treatment. Initial investigations indicate that prior to her illness, she visited a traditional market where live poultry were sold. She died on March 1. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_03_29.html b/data/flu-report-html/usgs_avian_flu_report_2011_03_29.html new file mode 100644 index 0000000..d01365f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_03_29.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H1N1 in wildlife. +
+ San Diego, California, USA +
+ . The American Veterinary Medical Association published the following news update on March 24: “A letter published in the April 2011 edition of the Emerging Infectious Diseases journal described respiratory disease due to confirmed 2009 H1N1 influenza infection in a 7-year old black-footed ferret, a 12-year old badger and a 19-year old binturong (also called a bearcat) housed in the San Diego zoological garden. According to the letter, these animals developed the infection during the initial pandemic in 2009 and they were likely infected through exposure to an infected human caretaker. The severity of disease in the badger and binturong necessitated euthanasia, but the black-footed ferret recovered with supportive care.” Read the letter in EID here: http://www.cdc.gov/eid/content/17/4/747.htm +

+

+ + H5N1 in Wild birds +
+ Tasmania +
+ . It was recently reported that low pathogenic avian influenza virus was found in Tasmanian wild ducks that were tested as part of a national surveillance program; however, none of the tests found highly virulent disease-causing avian influence strains. Department of Primary Industry, Water and Environment senior vet Dr. Bruce Jackson said that the program is an early detection measure to prevent and manage disease, and large scale poultry farmers are currently being advised to maintain their biosecurity. “We know some of these viruses, if they get into large commercial poultry units, there's some types which we know can cause disease in domestic poultry,” he said. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . It was reported on March 23 that nearly 30,000 chickens were culled and 50,000 eggs were destroyed at a poultry farm in Gazipur after the detection of H5N1 bird flu infection. Sripur Upazila livestock officer A K M Ataur Rahman said that the chickens started dying on March 20 and that samples of the carcasses were sent to Dhaka immediately. Culling began March 22 and was still occurring at the time of the report. +

+

+ + Indonesia + + . A provincial official reported on March 21 that nearly 2,000 birds had died and tested positive for H5N1 bird flu in Bengkulu province over the past two weeks. Most of the cases were recorded in Seluma district, which recorded 1,175 poultry deaths. According to Emran Kuswadi, coordinator of the province’s Animal Disease Control Center, the positive results were confirmed with rapid testing. He added that samples have also been sent to a veterinary laboratory in Lampung province for further diagnosis. +

+

+ Bali’s animal husbandry office confirmed on March 23 that at least 85 chickens died of H5N1 bird flu between February and March. This confirmation signals a wider epidemic in the districts of Badung, North Denpasar and Tabanan, which are all tourism areas. However, Office head Putu Sumantra said that no humans had been infected with the virus. +

+

+ + Japan + + . OIE recently reported 84 new cases of H5N1 bird flu in poultry in Japan: 82 cases from a poultry farm in Wakaba-ku, and 2 cases from another poultry farm in the same region. All 84 birds died from the infection. Poultry from the first farm tested positive for the virus on March 12 by rapid testing, and poultry from the second farm tested positive for infection on March 16 by PCR testing. Mandatory movement restriction has been enforced within 10 km of the affected farms since the days of the respective confirmed infections. The source of the outbreaks is unknown, but birds are being screened for the disease. +

+

+ + Myanmar + + . OIE recently reported 350 new cases of H5N1 bird flu in poultry in Myanmar. 780 layer chickens, aged 4 months and 19 months old, were housed in two sheds on a farm in Sagaing. Birds began to die on March 16, and 350 chickens died within four days. The source of the outbreak is unknown. The Livestock Breeding and Veterinary Department applied a number of measures to effectively contain the event, including culling the poultry within 1-km radius of the infected flock, cleaning and disinfecting the infected premises, restricting movement of poultry in and out of the infected area, and banning the sale of poultry and poultry products in the infected and restricted areas. +

+

+ + H5N1 infection in humans +
+ Indonesia +
+ . It was recently reported that a 26-year-old female resident of Desa Pacarejo, Semanu, Gunungkidul, died on March 23 after being treated for 3 days in Sardjito hospital, Yogyakarta, as a suspected bird flu patient. The Head of Health Service Kabupaten Gunungkidul, Dr. Sri Raharto, said the cause of death is still unknown. Currently, confirmation testing is being conducted by the Ministry of Health. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_04_05.html b/data/flu-report-html/usgs_avian_flu_report_2011_04_05.html new file mode 100644 index 0000000..b169c9f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_04_05.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Poultry +
+ Indonesia +
+ . Putu Sumantara, Head of Livestock Service in Bali, recently confirmed H5N1 bird flu infections in the municipals of Denpasar, Badung and Tabanan. Sumantara said the virus was first detected in an outbreak that killed dozens of chickens at the end of February in Desa (village) Sobangan, Kecamatan (subdistrict) Mengwi, Kabupaten (district) Badung; the virus later spread to Desa Peguyangan in Denpasar city and Kecamatan Penebel and Kecamatan Marga in Kabupaten Tabanan, where hundreds of chickens belonging to private and commercial farmers suddenly died. Bird flu infection in these outbreaks was confirmed by rapid testing. The governor of Bali, Made Mangku Pastika, issued a memo to mayors and municipal governments in Bali to take steps to control the spread of the virus. Currently, bird trade into and out of Bali Island is closed and transportation between municipals is restricted. +

+

+ The chief of Bangka Tengah Regency, Banka Belitung Islands, Erzaldi Rosman, recently announced that the municipal government of Bangka Tengah (Center Bangka) is seeking rapid response to the H5N1 bird flu that has attacked hundreds of local birds. Within the past week, several chickens raised by locals have died in 3 locations: Kelurahan (rural village) Arung Dalam and Padang Mulya in Koba district, and Kelurahan Dul in Pangkalan Baru district. Bird flu infection was confirmed by rapid testing. Sigit Winarno, veterinarian in charge in Bangka Tengah, said that disinfection, in addition to caging all birds, was being used as measure to control the spread of the virus in a 14-day period. +

+

+ + South Korea + + . Recently, OIE reported 520 new cases of H5N1 bird flu, all from a poultry farm in Seosan, Yeoncheon city, North Gyeongsang. All 520 birds died from the infection beginning on Mar 22. The source of the outbreak is currently unknown. Poultry in the affected farm and within a 500 m radius have since been culled and buried. In addition, disinfection and clinical surveillance within a 10 km radius of the affected farm have been intensified. +

+

+ + Vietnam + + . Recently, OIE reported 8,342 new cases of H5N1 bird flu in Vietnam: 1,250 cases in Nghia An, Nam Dihn province; 547 cases in Tinh Phong and 210 cases in Dong, Quang Ngai province; 2,000 cases in Nghia An, Nam Dihn province; 887 cases in Tu Son, Hai Phong province; 1,550 cases in Quang Huy, Bihn Dihn province; 1,500 cases in Hoi Yen, Quang Tri province; and 398 cases in Nghi Duc, Nghe An province. A total of 5,147 poultry birds died from the infection. Infections were confirmed by PCR testing. The outbreaks have been attributed to the introduction of new live animals into areas, illegal movement of sick animals, and/or fomites (humans, vehicles, feed, etc.). Control measures have been put in place to control the spread of the virus, including quarantining, culling, limiting movement of animals inside the country, and disinfecting infected premises/establishment(s). Officials also plan to screen poultry, zone affected areas, and vaccinate poultry in response to the outbreaks. +

+

+ + Other Avian Influenza Strains in Poultry + +
+ + The Netherlands + + . Recently, 10 new cases of low pathogenic avian influenza (H7N1) virus in a free-range layer farm in Schore, Zeeland, were reported to OIE. At the time of the report, all of the birds were still alive. The source of the outbreak is unknown, but measures have been put in place to control the spread of the virus, including stamping, zoning affected areas, and limiting movement of animals within the country. +

+

+ + USA + + . Recently, OIE reported that 3,000 poultry birds in Polk County, Missouri, have been exposed to low pathogenic avian influenza (H7N3) virus. The birds are from 14,000 19-week-old turkeys and 16,000 5-week-old turkeys, all of which were located at a two-shed contract commercial turkey operation. At the time of the report, all of the birds were still alive, and had not shown any signs of sickness. Samples were collected as part of routine pre-slaughter surveillance for the National Poultry Improvement Plan (NPIP) Avian Influenza Clean Program (H5 and H7). The older birds are market-ready and are being processed and the younger turkeys will be destroyed and buried on site. The Missouri H5/H7 LPAI Initial State Response and Containment plan has been implemented as a precautionary measure. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . On March 29 the Ministry of Health reported three new confirmed cases of human H5N1 bird flu infection in Egypt. The first case was a 32-year-old male from Suez Governorate. He developed symptoms on March 8, was hospitalized on March 12, and died on March 13. The second case was a 28-year-old female from Giza Governorate. She developed symptoms on March 8 and was hospitalized on March 10. At the time of the report she was in stable condition. The third case was a 4-year-old male from Behira Governorate. He developed symptoms on March 5 and was hospitalized on March 7. He recovered and was discharged from the hospital on March 12. All three cases were confirmed by the Egyptian Central Public Health Laboratories, a National Influenza Center of the WHO Global Influenza Surveillance Network. Investigations into the source of infections indicate that the all three cases were exposed to sick and/or dead poultry suspected to have bird flu. +

+

+ + Bangladesh + + . One new human case of infection by low pathogenic avian influenza (H9N2) virus has been reported by the Institute of Epidemiology Disease Central and Research (IEDCR), in Dhaka, Bangladesh. The case was a Kamalapur, Dhaka Division resident and infection was confirmed March 26. No further information was available at the time of the report. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_04_12.html b/data/flu-report-html/usgs_avian_flu_report_2011_04_12.html new file mode 100644 index 0000000..48003c3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_04_12.html @@ -0,0 +1,2077 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Apr 12, 2011 +

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+ News Update, April 12 +

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+ + H5N1 in Wild birds + +
+ In a paper published recently in the SIAM Journal on Applied Mathematics, authors Lydia Bourouiba, Stephen A. Gourley, Rongsong Liu, and Jianhong Wu analyze the interaction between non-migratory poultry and migratory birds to investigate the role of the latter in the spread of H5N1 bird flu. Using mathematical models to simulate the paths of migratory birds along flyways, the researchers demonstrate that the arrival of migratory birds in winter can introduce avian influenza to poultry in disease-free periods. Once the flu becomes endemic in the wintering location, the result is sustenance of the flu in the migratory birds themselves. "How the interaction of a migratory bird species with domestic poultry contributes to the spread and persistence of the highly pathogenic H5N1 virus is a question of profound importance to the control of avian influenza spread, and to the effort of mitigating the impact of the disease on the domestic poultry industry," said Gourley, a researcher in the Department of Mathematics at the University of Surrey, in a recent press release. The authors suggest that future research should be focused on finding mathematical tools that can predict peak disease times. Gourley said, “Mathematical modeling can play a significant role in solving such a complex problem in which experiments are difficult and surveillance data is limited." In addition, the authors suggest subsequent research with data from international migratory bird surveillance and the commercial poultry trade in an effort to shed more light on these interactions on a global scale. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . The Health Service and Livestock and Food Security Service of Gorontalo in North Sulawesi culled hundreds of H5N1bird flu-infected chickens on April 4 after about 195 chickens in 5 villages in Gorontalo tested positive for H5N1 bird flu virus on April 2. Residents suspected bird flu infection when they found dead chickens with a bluish appearance. Following the discovery, they collected and culled all birds within a 100-meter radius of the infected spot. Culling was conducted by slaughtering then burning the chickens. The local government is now screening all villages within Gorontalo city to prevent the disease from spreading. At the time of the report, there were no human infections in the area. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The Health Ministry of Cambodia and the World Health Organization reported on April 6 that an 11-year-old girl who died on March 31 tested positive for H5N1 bird flu virus. The child’s death brings the total number of Cambodian fatalities from the virus to four since the beginning of the year. “The girl is the 14th person in Cambodia to become infected with the H5N1 virus and the 12th to die from complications of the disease since 2003,” the statement said. +

+

+ + Egypt + + . The Ministry of Health of Egypt announced four new confirmed cases of human infection with H5N1 bird flu virus on April 6. The first case is a one-year-old boy from Behaira Governorate. He developed symptoms on February 14 and was hospitalized on February 16; he recovered and was discharged on February 22. The second case is a three-year-old girl from Behaira Governorate. She developed symptoms on March 10 and was hospitalized on March 12; she recovered and was discharged on March 18. The third case is a 34-year-old woman from Alexandria Governorate. She developed symptoms on March 9 and was hospitalized on March 15; at the time of the report, she was still under treatment in stable condition. The fourth case was a 30-year-old woman from Kafr El-Shaikh Governorate. She developed symptoms on March 7 and was hospitalized on March 15; she recovered and was discharged on March 27. The first two cases are from the same district but different villages, and they are not related. Investigations into the source of infection indicate that all cases had exposure to sick and/or dead poultry suspected to have avian influenza. The cases were confirmed by the Egyptian Central Public Health Laboratories, a National Influenza Center of the WHO Global Influenza Surveillance Network. +

+

+ + Indonesia + + . The Biomedical and Basic Health Technology Research Center Laboratory of the Ministry of Health reported on April 1 that a 28-year-old female resident of Kabupaten (district) Gunung Kidul, Yogyakarta province, had tested positive for H5N1 bird flu infection. On March 1, the woman began to suffer from fever, coughing and vomiting. After seeking medical treatment from health workers and private clinics for several days, she was referred to a private hospital on March 11, where she was diagnosed with fever. She developed breathing difficulty during the hospitalization, and two days later she was referred to a bird flu referral hospital in Yogyakarta, where she received treatment according to the standard procedure. She later died in this hospital. The cause of the infection is undetermined; however, it is known that the woman’s family rears several chickens and ducks and that she frequently visited a traditional market to buy goods to be sold in her own shop. Control measures have been taken by the Ministry of Health with the local health service, and the Directorate General of Disease Control and Environmental Health has informed the World Health Organization. +

+

+ It was reported on April 3 that a 45-year-old female from Desa (hamlet) Gadungan Sari, Kecamatan (district) Selemadeg Timur, Bali province, is suspected of having H5N1 bird flu infection. Dr. Ketut Subrata, of Bali’s Health Service, said the patient became a bird flu suspect after she showed bird flu-like symptoms such as coughing, runny nose, fever and difficulty breathing. Additionally, there were sudden chicken deaths around her house within the month preceding her symptoms. The patient is currently hospitalized and in good condition. The medical investigation by the Health Service is ongoing, and the hospital is still waiting for laboratory confirmation. +

+

+ The director of Wahidin Sudirohusodo hospital in Makassar, Andi Kalsum Patonangi, reported on April 7 that a 2-year-old tested positive for H5N1 bird flu infection. Prior to diagnosis, the child had developed high fever, breathing difficulty and flu-like signs. Infection was confirmed after intensive examination by the medical team. Patonangi said the child is now under intensive treatment and his condition is now improving. It is suspected that the patient was probably infected by contact with birds when his immunity was low. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_04_28.html b/data/flu-report-html/usgs_avian_flu_report_2011_04_28.html new file mode 100644 index 0000000..17eb8b0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_04_28.html @@ -0,0 +1,2090 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds +
+ Mongolia +
+ . OIE has recently reported three new cases of H5N1 bird flu in Sükhbaatar province. Three whooper swans (Cygnus cygnus) have died from the disease since April 14. The swans were found dead by Zegst lake, in Dariganga, and infection was later confirmed by PCR testing. The source(s) of the infection and the birds is unknown, but researchers are screening wild birds for the disease. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . It was recently reported that H5N1 bird flu has spread to Kotamobagu in North Sulawesi. After residents in Desa (village) Kopandakan 1 reported that a number of chickens in the area suddenly died, the Agriculture and Livestock Service of the Bolaang Mongondow district conducted rapid testing on the carcasses, which yielded positive results. The owner of the chickens said that he observed unknown pigeons foraging for leftover chicken feed a day before the chickens died. Following the incident, local officials culled birds in Desa Kopandakan 1. +

+

+ + Iran + + . A source in the Hashtgerd area recently reported that H5N1bird flu has been found in four cities (Abyek, Karaj, Qazvin, and Urmiyeh) in Iran. The government has killed a large number of poultry birds, including broiler, layer and breeding hens during the past 50 days. This has led to an increase in the price of broiler hens and their eggs in the country. +

+

+ + South Korea + + . OIE recent reported 200 new cases of H5N1 bird flu in Osu, Yeongcheon-city, North Gyeongsang. Since April 14, 130 chickens have died from the disease. Infection was confirmed by PCR testing. The cause of the infection in the chickens is unknown, but researchers are screening other birds for the disease. In addition, they are applying other control measures, including culling, zoning, and limiting movement of animals within the country. +

+

+ + Vietnam + + . OIE recently reported 5,509 new cases of H5N1 bird flu in the following provinces: 1,190 in Tien Giang (690 in Tan Phu, Cai Lay district; 500 in Tan Binh, Cai Lay district); 42 in Bac Kan; 3,065 in Quang Ngai (1,250 in Nghia Ky, Tu Nghia district; 1,155 in Hanh Thien, Nghia Hanh district); 1,000 in Dak Lak; and 212 in Ha Nam. Separately, 1250 new H5N1 cases in Hung Nhon, Quang Tri province were reported to OIE on Apr 21. The source(s) of the infections has been attributed to the introduction of new live animals into villages, the illegal movement of animals within the country, and fomites. So far, in an effort to control the spread of the disease, officials have quarantined live sick birds, disinfected premises that housed sick birds, limited the movement of animals inside the country, and conducted modified culling procedures. Officials also plan to screen other birds for the disease, zone affected areas, and vaccinate in response to the outbreak. +

+

+ + USA + + . Nebraska Department of Agriculture spokeswoman Christin Kamm recently confirmed that a case of low pathogenic avian influenza was discovered at a recent bird sale, which was traced back to quarantined flocks of chickens, pheasants and quail in the southeast region of the state. Kamm said that the quarantined flocks are not part of commercial poultry operations. The birds were raised either for limited sales, personal consumption or county fair competitions. State officials said they plan to slaughter the three flocks of birds in order to control the spread of the disease, but they emphasized that the type of bird flu found in these birds rarely affects humans. All other birds within a two-mile radius of the affected flocks will be tested for the disease. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The health ministry and the World Health Organisation said in a joint statement on April 21 that a five-year-old Cambodian girl, from southeastern Prey Veng province, who died on April 16 had tested positive for H5N1 bird flu. The girl is the fifth person to die from bird flu in the country this year. "Compared to last year, we have seen more H5N1 cases this year and children appear to be most vulnerable. I urge parents and guardians to keep children away from sick or dead poultry," said Cambodian Health Minister Mam Bun Heng. All five of Cambodia's bird flu cases since January, four of which were children, have been fatal. +

+

+ + Indonesia + + . It is highly suspected that a 30-year-old male resident of Desa Karangsari RT3 RW2, Kecamatan Adipala, Cilacap Timur, Central Java Province who died on April 14 had H5N1 bird flu virus. The victim became sick on April 7 and eventually developed severe breathing difficulty, fever and other bird flu-like signs; hospital diagnosis showed pneumonia or lung infection, high fever and low thrombocyte count. Investigation showed that, prior to becoming sick, the victim was exposed to hundreds of birds, such as chickens, ducks and swans that died in his neighborhood; a rapid test showed those birds were positive for H5N1 bird flu. The Head of Health Service of Kabupaten Cilacap, Bambang Setyono, said victim’s lung liquid has been sent to Kariadi hospital in Semarang, and the test result is expected within a week. Health Service and Livestock Service are currently conducting further epidemiological investigation on this case. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_05_18.html b/data/flu-report-html/usgs_avian_flu_report_2011_05_18.html new file mode 100644 index 0000000..f32f8f3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_05_18.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from May 18, 2011 +

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+ News Update, May 18 +

+

+ + H5N1 in Poultry +
+ South Africa +
+ . OIE recently reported 50 new cases (from different outbreaks) of highly pathogenic H5N2 bird flu in the Oudtshoorn district in Western Cape Province. All are ostriches from commercial farms in the area. The cases tested positive on serology during routine surveillance, but tested negative on initial PCR tests and no virus could be found. Infection was confirmed after several follow-up PCR tests. At the time of the report, no clinical signs or mortalities had been seen. To control the spread of the virus, the cases have been quarantined and other susceptible birds are being screened for the virus; culling is planned as a further control measure. +

+

+ + South Korea + + . The South Korean government recently announced that starting next year, it will reduce compensation to farmers affected by livestock diseases, such as foot-and-mouth disease and avian influenza. The agriculture ministry says that if outbreaks of diseases were brought on by the farmers' negligence, compensation will be cut by up to 80 percent, and under no circumstances will their damages be fully covered. Also, when farm owners do not report the employment of migrant workers or fail to sterilize the area thoroughly enough to prevent animal diseases, their licenses will be revoked. Large farms with an annual income of 60 million won, or 55,000 US dollars, will be under review starting next year; smaller farms will be required to do the same by 2015. +

+

+ + UK + + . On May 10, the Department for Environment, Food and Rural Affairs (DEFRA) announced the launch of an EU-funded international networking project that will link thousands of scientists across the world. According to DEFRA, this project will allow scientists to exchange research, establish common goals and collaborate on developing future control measures for major diseases, such as avian flu, which are a cause for global concern. DEFRA said that the project would also serve to underpin early warning systems, by making it easier to detect emerging diseases in foreign countries that could pose a risk to the UK farming industry. UK Chief Veterinary Officer Nigel Gibbens said in a press release, “Global coordination of our animal disease research efforts will help ensure that new technologies, such as diagnostic tools, vaccines and new treatments, are identified and put to work as quickly as possible to make a real difference to the health, welfare and productivity of livestock.” The €1million network will include Canada, USA, Mexico, Argentina, Brazil, China, India, Japan, Australia, New Zealand, Russia, Italy, Germany, France, Spain, Denmark and the UK. Read DEFRA’s press release about its project + + here + + . +

+

+ + H7 in Poultry +
+ The Netherlands +
+ . Dutch authorities said on May 12 that they would destroy 8,800 chickens at an organic poultry farm in Kootwijkerbroek after the discovery of H7 bird flu infection. Further characterization of the virus subtype and pathogenicity is pending. In addition, authorities said that 60 farms within a 2-mile radius of the farm would be screened for the virus. A ban on the transport of poultry, eggs and manure within the 3 kilometer zone has been instituted. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . The Center of Health Research and Development Laboratory of the Indonesia Ministry of Health recently confirmed a new case of human infection with H5N1 bird flu. The victim is an 8-year-old girl from West Jakarta. On April 1, the girl started to develop signs of infection, such as fever, cough and chest pain. She was admitted to a bird flu referral hospital in Jakarta on April 8 and began receiving treatment, but died the same day. No information was provided about the cause of the infection, and no additional cases were reported. +

+

+ It was recently reported that a child is being treated in M Djamil hospital, Padang, as an H5N1 bird flu suspect. The child’s age and sex, and the date of emergence of symptoms were not provided. What is known is that the child started to develop fever, a cough and breathing difficulty, and was then brought to Lubukbasung regional hospital for treatment. Further examination and chest X-ray led to the child being classified as a suspected bird flu case. The source of the potential infection is unknown, but the child’s fever was observed after several chickens were found to have suddenly died in the child’s yard. The dead chickens tested positive for the virus. Depopulation of the birds in the child’s neighborhood has been completed. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_05_25.html b/data/flu-report-html/usgs_avian_flu_report_2011_05_25.html new file mode 100644 index 0000000..d4ab5ea --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_05_25.html @@ -0,0 +1,2096 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from May 25, 2011 +

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+ News Update, May 25 +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . OIE recently reported 3,184 new cases of H5N1 bird flu, all from poultry farms in the Dhaka division: 3,000 in Chandiber, Bhairab, Kishoregonj; 119 in Bastumbag, Barodi, Sonargaon, Narayangonj; and 65 in Mandarpara, Barodi, Sonargaon, Narayangonj. The species of the birds affected were not provided. All of the cases died within the past week due to the virus. Infection was confirmed by both rapid and PCR testing. The sources of the outbreaks are unknown. Disinfection and culling procedures have been implemented in the affected areas. In order to control the spread of the virus, government officials are enforcing movement restrictions of animals within the country. +

+

+ + Vietnam + + . OIE recently reported 3,542 new cases of H5N1 bird flu in various Vietnamese provinces: 292 in Dong Y, Lang Son province; 2,650 in Ky Tho, Quang Ngai province; and 450 in Binh Minh and 150 in Thoi Hoa, Vinh Long province. The species of the birds affected bird were not provided. 277 cases died within the past week due to the virus. Infection was confirmed by PCR testing. The sources of the outbreaks are unknown, but researchers are screening other birds for the virus. Disinfection and culling procedures have been implemented in the affected areas. In order to control the spread of the virus, government official have ordered that sick animals be quarantined and are enforcing movement restrictions of animals within the country. +

+

+ News Update, May 18 +

+

+ + H5N1 in Poultry +
+ South Africa +
+ . OIE recently reported 50 new cases (from different outbreaks) of highly pathogenic H5N2 bird flu in the Oudtshoorn district in Western Cape Province. All are ostriches from commercial farms in the area. The cases tested positive on serology during routine surveillance, but tested negative on initial PCR tests and no virus could be found. Infection was confirmed after several follow-up PCR tests. At the time of the report, no clinical signs or mortalities had been seen. To control the spread of the virus, the cases have been quarantined and other susceptible birds are being screened for the virus; culling is planned as a further control measure. +

+

+ + South Korea + + . The South Korean government recently announced that starting next year, it will reduce compensation to farmers affected by livestock diseases, such as foot-and-mouth disease and avian influenza. The agriculture ministry says that if outbreaks of diseases were brought on by the farmers' negligence, compensation will be cut by up to 80 percent, and under no circumstances will their damages be fully covered. Also, when farm owners do not report the employment of migrant workers or fail to sterilize the area thoroughly enough to prevent animal diseases, their licenses will be revoked. Large farms with an annual income of 60 million won, or 55,000 US dollars, will be under review starting next year; smaller farms will be required to do the same by 2015. +

+

+ + UK + + . On May 10, the Department for Environment, Food and Rural Affairs (DEFRA) announced the launch of an EU-funded international networking project that will link thousands of scientists across the world. According to DEFRA, this project will allow scientists to exchange research, establish common goals and collaborate on developing future control measures for major diseases, such as avian flu, which are a cause for global concern. DEFRA said that the project would also serve to underpin early warning systems, by making it easier to detect emerging diseases in foreign countries that could pose a risk to the UK farming industry. UK Chief Veterinary Officer Nigel Gibbens said in a press release, “Global coordination of our animal disease research efforts will help ensure that new technologies, such as diagnostic tools, vaccines and new treatments, are identified and put to work as quickly as possible to make a real difference to the health, welfare and productivity of livestock.” The €1million network will include Canada, USA, Mexico, Argentina, Brazil, China, India, Japan, Australia, New Zealand, Russia, Italy, Germany, France, Spain, Denmark and the UK. Read DEFRA’s press release about its project + + here + + . +

+

+ + H7 in Poultry +
+ The Netherlands +
+ . Dutch authorities said on May 12 that they would destroy 8,800 chickens at an organic poultry farm in Kootwijkerbroek after the discovery of H7 bird flu infection. Further characterization of the virus subtype and pathogenicity is pending. In addition, authorities said that 60 farms within a 2-mile radius of the farm would be screened for the virus. A ban on the transport of poultry, eggs and manure within the 3 kilometer zone has been instituted. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . The Center of Health Research and Development Laboratory of the Indonesia Ministry of Health recently confirmed a new case of human infection with H5N1 bird flu. The victim is an 8-year-old girl from West Jakarta. On April 1, the girl started to develop signs of infection, such as fever, cough and chest pain. She was admitted to a bird flu referral hospital in Jakarta on April 8 and began receiving treatment, but died the same day. No information was provided about the cause of the infection, and no additional cases were reported. +

+

+ It was recently reported that a child is being treated in M Djamil hospital, Padang, as an H5N1 bird flu suspect. The child’s age and sex, and the date of emergence of symptoms were not provided. What is known is that the child started to develop fever, a cough and breathing difficulty, and was then brought to Lubukbasung regional hospital for treatment. Further examination and chest X-ray led to the child being classified as a suspected bird flu case. The source of the potential infection is unknown, but the child’s fever was observed after several chickens were found to have suddenly died in the child’s yard. The dead chickens tested positive for the virus. Depopulation of the birds in the child’s neighborhood has been completed. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_05_31.html b/data/flu-report-html/usgs_avian_flu_report_2011_05_31.html new file mode 100644 index 0000000..90d23fb --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_05_31.html @@ -0,0 +1,2073 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from May 31, 2011 +

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+ News Update, May 27 +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . Two sub-districts in Jambi province are experiencing outbreaks of H5N1 bird flu. Hundreds of chickens in the area have died. +

+

+ + South Africa (LPAI) + + . Additional ostriches on seven farms in the Klein Karoo valley will be culled after birds in the area tested positive for low pathogenic bird flu. Their skin and feathers will be harvested and the meat will be used in pet food. Bird flu was detected in the province last month and exports of ostrich meat to the European Union were immediately suspended. At least 10,000 birds have already been culled; sampling continues on farms so the Western Cape agriculture department cannot yet estimate the total number to be culled. . The economy of the Klein Karoo valley, based on ostrich production, has been seriously impacted by this outbreak. A team of experts from the European Union has travelled to the area to assist in implementing control measures. +

+

+ + Germany (LPAI) + + . On a farm in Nordrhein-Westfalen 4,000 birds have tested positive for low pathogenic avian influenza. Tests were performed at the Friedrich-Loeffler Institute. All 20,000 birds housed on the farm have been culled to prevent the spread of the disease. Other control measures have been put in place such as control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the infected premises. +

+

+ News Update, May 25 +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . OIE recently reported 3,184 new cases of H5N1 bird flu, all from poultry farms in the Dhaka division: 3,000 in Chandiber, Bhairab, Kishoregonj; 119 in Bastumbag, Barodi, Sonargaon, Narayangonj; and 65 in Mandarpara, Barodi, Sonargaon, Narayangonj. The species of the birds affected were not provided. All of the cases died within the past week due to the virus. Infection was confirmed by both rapid and PCR testing. The sources of the outbreaks are unknown. Disinfection and culling procedures have been implemented in the affected areas. In order to control the spread of the virus, government officials are enforcing movement restrictions of animals within the country. +

+

+ + Vietnam + + . OIE recently reported 3,542 new cases of H5N1 bird flu in various Vietnamese provinces: 292 in Dong Y, Lang Son province; 2,650 in Ky Tho, Quang Ngai province; and 450 in Binh Minh and 150 in Thoi Hoa, Vinh Long province. The species of the birds affected bird were not provided. 277 cases died within the past week due to the virus. Infection was confirmed by PCR testing. The sources of the outbreaks are unknown, but researchers are screening other birds for the virus. Disinfection and culling procedures have been implemented in the affected areas. In order to control the spread of the virus, government official have ordered that sick animals be quarantined and are enforcing movement restrictions of animals within the country. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_06_07.html b/data/flu-report-html/usgs_avian_flu_report_2011_06_07.html new file mode 100644 index 0000000..f5c1ef9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_06_07.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, June 7 +

+

+ + H5N1 in Poultry +
+ South Korea +
+ . An outbreak of H5N1 bird flu that began on May 16 in Gyeonggi province killed 650 chickens on a farm of 15,800. The birds tested positive by PCR conducted at the National Veterinary Research and Quarantine Service. The remaining chickens were culled to prevent the spread of the disease. The cause of the outbreak is yet to be determined since previous outbreaks had been resolved. Control measures have been applied including control of wildlife reservoirs, movement control, screening, zoning, and disinfection of the infected premises. +

+

+ + Germany (LPAI) + + . Despite attempts to control the outbreak, low pathogenic H7 bird flu is spreading in North Rhine Westphalia. More than 50,000 birds have already been culled to prevent the disease from spreading (48,950 from three farms in Rietberg and 6,000 turkeys on a farm in Rheda-Wiedenbruck). The disease was first suspected on May 24. Other control measures such as control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the infected premises have also been applied. +

+

+ + Taiwan (LPAI) + + . After the H7N3 outbreak was confirmed on April 7, epidemiological investigation and intensified surveillance were carried out on poultry farms within a 3-km-radius. Samples taken from a duck breeder tested positive for low pathogenic H7N3 bird flu on May 26. The farm houses 1,900 ducks; 20 have tested positive. Movement restriction was implemented on the farm immediately after the disease was detected. Clinical investigation on that farm showed that the breeders were healthy without abnormal mortality. Other prevention measures have been undertaken including screening, zoning, and disinfection of the infected premises. +

+

+ + Vietnam + + . The Vietnamese government has halted the nationwide vaccination of poultry against bird flu because a new strain of H5N1 bird flu may have rendered the vaccine imported from China ineffective. According to the Animal Health Department, the new strain has arisen since 2010 and has been circulating in northern provinces, coastal provinces in the central region, and in the Central Highlands, while the old type of the virus remains active in southern provinces. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health has announced a new human case of infection with H5N1 bird flu. A 30-year-old woman from Alexandria governorate developed symptoms on April 26 and was hospitalized on May 3. She received treatment with oseltamivir but died on May 9. Investigations into the source of the illness suggest that the woman had been exposed to sick poultry that may have had bird flu. The Egyptian Central Public Health Laboratory confirmed the case. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_06_10.html b/data/flu-report-html/usgs_avian_flu_report_2011_06_10.html new file mode 100644 index 0000000..be9e9e7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_06_10.html @@ -0,0 +1,2058 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 10, 2011 +

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+ News Update, June 10 +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . An outbreak of H5N1 in poultry at a village in Lang Son province was reported on June 6. The source of the outbreak is unknown, but 1,008 birds from the village were culled to prevent the spread of the disease. Other preventive measures were set in place, such as quarantine, movement control, and disinfection of the area. +

+

+ + Pakistan + + . Contrary to the recommendations of the steering committee for bird flu, the Government of Pakistan reported on June 7 that it has decided to end the National Programme for the Control and Prevention of Avian Influenza (NPCPAI). NPCPAI had been in charge of prevention and control of bird flu in Pakistan. Based on measures taken under the program, the OIE had declared Pakistan free of bird flu for a period of three months. The program was dismissed through a notification issued by the Adviser to Prime Minister on Dev. Budget Muhammad Asif Shaikh. Some are concerned that due to this decision, Pakistan will not be able to prevent and control the bird flu, will undergo financial and health problems, and the OIE will eventually will not uphold the declaration that Pakistan is a bird flu free country. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . The Ministry of Health announced a confirmed case of human infection with H5N1 bird flu on June 3. A 1-year-old girl from Jakarta province developed symptoms on April 3, was hospitalized on April 8, and has now fully recovered. One week before the onset of the disease, the patient went with her father to the market and handled chickens while there. Laboratory tests confirmed H5N1 bird flu as the cause of illness. Of the 178 cases confirmed to date in Indonesia, 146 have been fatal. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_06_20.html b/data/flu-report-html/usgs_avian_flu_report_2011_06_20.html new file mode 100644 index 0000000..01650a1 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_06_20.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 20, 2011 +

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+ News Update, June 20 +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . The Agriculture and Livestock Service of Kotawaringin Timur in Central Kalimantan province confirmed on June 11 that dozens of chickens have died of H5N1 bird flu. The area is not considered endemic because this is the first outbreak since 2004. Officials and locals are conducting control measures and restricting the transport of birds into the area. +

+

+ In Aceh province, tests by the Agriculture, Livestock, Fishery and Maritime Service of Banda Aceh on dozens of chickens owned by a resident in the area were also positive for bird flu. The owner reported that the chickens died suddenly over several consecutive days. The results of the tests were reported on June 13 after which officials culled and (? I seriously hope they didn’t just start a bonfire) burned the surviving chickens along with their feed and disinfected their cages to prevent the spread of the disease. In Lhokseumawe, another resident reported the sudden death of hundreds of quail, but the cause of death is as yet unknown. +

+

+ + Iran + + . Mehr News Agency reported on June 16 that H5N1 bird flu, first reported in April, has continued to impact some Iranian poultry farms. Cities affected include Qazvin, Karaj and Abyek. It is thought that the disease has continued to spread because of a lack of hygienic and health standards on poultry farms. +

+

+ + Germany (LPAI) + + . Low pathogenic bird flu continues to spread in the state of North Rhine-Westphalia. One farm with 7,640 birds reported 1 case on June 4 and two farms housing a total of 4,079 birds reported 7 cases on June 8. All 11,719 birds from the farms have been culled to prevent the spread of the disease. Other control measures applied include control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the premises. The source of the outbreak is unknown. +

+

+ + South Africa (not H5N1) + + . Outbreaks of Highly Pathogenic Avian Influenza H5N2 were detected in four additional commercial ostrich farms in Western Cape Province between June 19 and 21. A total of 2,576 ostriches were housed on the farms and 26 tested positive for H5 bird flu by PCR. No clinical signs or mortalities were seen and the source of the outbreak is unknown. The farms have enacted control measures including quarantine and screening and plan to cull the birds in order to stamp out the disease. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . A joint statement from the Ministry of Health and the World Health Organization reported that a seven-year-old girl from Prey Veng province died on June 7 from respiratory complications arising from bird flu. The patient became ill on May 24 and was hospitalized May 31. She is the sixteenth recorded person from Cambodia to have become infected with H5N1 bird flu since 2005 and the fourteenth to have died from the disease. Philippe Buchy, head of virology at the Pasteur Institute in Phnom Penh, said, “Usually, by the end of April, the virus stops circulating among poultry stock. But this year, for an unknown reason, the virus is still circulating.” It is thought that the girl caught the virus by eating infected poultry. According to the joint statement, the Health Ministry plans to train clinicians in “high-risk provinces” to detect bird flu in the early stages of infection. Health officials have collected samples from 65 people in the girl’s village, all of whom tested negative for bird flu. +

+

+ + Egypt + + . The Ministry of Health in Egypt notified the World Health Organization of five recent human cases of infection with H5N1 bird flu. The first patient is a 40-year-old woman from Aswan District, Aswan Governorate. She developed symptoms on May 14, was hospitalized and treated with oseltamivir. She recovered and was discharged. The second patient was a 21-year-old pregnant woman from Ashmun District, Minufiyah Governorate. She developed symptoms on May 21, was hospitalized and received oseltamivir, but died on May 29. The third patient was a 31-year-old man from Shobra el Kheima District, Qalyubiyah Governorate. He developed symptoms on May 21, was hospitalized, and received oseltamivir, but died on June 5. The fourth patient was a 32-year-old man from el Zawya District, Cairo Governorate. He developed symptoms on May 23, was hospitalized, and received oseltamivir, but died on June 2. The fifth case is a 16-year-old boy from Ashmun District, Minufiyah Governorate. He developed symptoms on May 21 and was hospitalized. He received oseltamivir and is in critical condition, but he is recovering. Investigations into the source of infection indicate that all the patients were exposed to poultry suspected to have avian influenza. The cases were confirmed by the Egyptian Central Public Health Laboratories, a National Influenza Center of the WHO Global Influenza Surveillance Network. Of the 149 cases confirmed to date in Egypt, 51 have been fatal. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_07_06.html b/data/flu-report-html/usgs_avian_flu_report_2011_07_06.html new file mode 100644 index 0000000..9781237 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_07_06.html @@ -0,0 +1,2064 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 06, 2011 +

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+ News Update, July 6 +

+

+ + H5N1 in Wild birds +
+ Japan +
+ . According to a report submitted to the OIE on June 29, H5N1 bird flu virus has not been isolated from wild birds since May 9, 2011. By now, winter migratory birds have almost all returned to the north. Regular surveillance for H5N1 in wild birds has been conducted all year around. The event is resolved and no more reports will be submitted. No H5N1 bird flu has been detected in domestic poultry since March 16, 2011. Following culling and disinfection activities, H5N1 has not been detected in subsequent monitoring efforts for three months and the country is declared H5N1-free as of June 25, 2011. +

+

+ + H5N1 in Poultry +
+ Germany (LPAI) +
+ . Low pathogenic bird flu continues to spread in the state of North Rhine-Westphalia. One farm of 5,372 reported 3 cases on June 22 and one farm of 20,260 birds reported 12 cases on June 23. The disease has also spread to Saxony where one farm of 1,470 birds reported 2 cases on June 24 and three farms housing a combined total of 236 birds each reported one case on June 28. One of the sick birds from Saxony died of the disease. All of the remaining 27,337 birds from the farms in North Rhine-Westphalia and Saxony were culled to prevent the spread of the disease. Other control measures applied include control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the premises. It is thought that the disease is being spread through the legal movement of animals prior to detection. +

+

+ + Netherlands (LPAI H7N7) + + . According to Murco Mijnlieff, an agriculture ministry spokesman, "Bird flu has been discovered at a poultry farm with some 47,000 chickens in Creil, in the (central) Flevoland province." He added that authorities believed it was a low-pathogenic variety of H7, but more tests were being done with full results expected June 25. "The farm is being cleaned up and the chickens are being killed," as a result of the outbreak, Mijnlieff reported. The outbreak was discovered when the farmer noticed a high number of ill chickens and decreased egg production. Tests were confirmed bird flu. Three other farms in the area are being monitored and authorities have introduced a 3 km (1.8 mi) radius transport ban on poultry, eggs and poultry waste. +

+

+ + USA (LPAI) + + . Some birds on a commercial turkey farm of 5,500 in Wright County, Minnesota, tested positive for low pathogenic bird flu. The molecular tests, performed at the National Veterinary Services Laboratories on June 29, were a part of routine pre-market testing of healthy birds with no clinical signs of avian influenza. The USDA Animal Plant Health Inspection Service (APHIS) and the Minnesota Board of Animal Health are conducting a comprehensive epidemiological investigation of this event. Following the State response and containment plan, the Minnesota Board of Animal Health has quarantined the index premises and has established a surveillance zone of three miles. All flocks within the three-mile surveillance zone have been tested and are negative for influenza. So far no virus has been isolated from the turkeys on the farm. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_07_11.html b/data/flu-report-html/usgs_avian_flu_report_2011_07_11.html new file mode 100644 index 0000000..47164f6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_07_11.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, July 11 +

+
+ + Bangladesh + + . Up to 15,000 poultry firms have been affected by bird flu, which has cut chicken production by more than 33 percent, according to Syed Abu Siddique, president of the Bangladesh Poultry Industries Association. The number of affected farms is significantly higher than the 153 reported by the government so far. The government has exempted the industry from several taxes for the next couple of years to boost growth; however, industry officials fear tax breaks will not be enough to revive self-sufficiency in bird and egg production without vaccines and improved control measures for bird flu. +
+
+ + +

+ In the Khulna District, a livestock farm experienced an outbreak of H5N1 bird flu beginning on June 22. On this farm, 231 birds died and the remaining 869 birds were culled to prevent the spread of the disease. The source of this outbreak is unknown, but control measures such as movement control and disinfection of the premises have been instituted. The Bangladesh Livestock Research Institute tested samples on June 24. +

+

+ + Indonesia + + . In South Sulawesi province, H5N1 bird flu killed at least 10,000 chickens. According to the Head of Livestock Service of Sidrap, Muhammad Azis, a team has been dispatched to monitor the situation. Azis mentioned that the outbreak affected mainly native/backyard chickens, not commercial chickens. Susceptible chicken farms have been disinfected, but 5.4 million chickens could be at risk for bird flu. +

+

+ + South Africa (LPAI) + + . A total of 5 ostrich farms in the Western Cape Province were subjected to outbreaks of Low Pathogenic Avian Influenza between March and June of this year. Out of 3,366 cases of bird flu, only 8 birds died from the disease, while 3,508 birds from a total of 9,005 susceptible birds were culled to prevent the spread of the disease. Control measures included quarantine and screening. The source of the outbreak remains unknown. +

+

+ + H5N1 in Humans +
+ Indonesia +
+
+ . In West Java province, a 45-year-old man was under observation in Hasan Sadikin hospital for suspected H5N1 bird flu; he has been released from the isolation ward but remains hospitalized The man developed symptoms a week after contact with birds; blood, throat, and nose swab samples have been collected to be tested by the Ministry of Health. A journalist, who handled birds at the same time, died on June 30, but his death was reported as pneumonia rather than bird flu. As a precaution, the journalist was buried in a sealed coffin brought to the funeral by Health Service officers dressed in bio-hazard protective wear. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_08_02.html b/data/flu-report-html/usgs_avian_flu_report_2011_08_02.html new file mode 100644 index 0000000..e64d125 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_08_02.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, August 2 +

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+ + H5N1 in Wild Birds +
+ Cambodia +
+
+ . In the Takeo Province of Cambodia, the Phnom Tamao Zoo experienced an outbreak of the highly pathogenic avian influenza virus among wild birds that gather and feed at the zoo’s ponds. Between July 13 and July 18, a total of 19 birds were found dead, while another 10 were culled to prevent the spread of disease. Although the source of the infection remains unknown, the National Veterinary Research Institute with cooperation from the Phnom Tamao Zoo Veterinary conducted an investigation of the zoo and surveillance in the nearby village from July 19 through 25. In addition, control measures, such as quarantine, movement control, zoning, disinfection, and dipping/spraying have been employed. +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . New outbreaks of bird flu occurred among 12 households in the Vietnamese province of Phu Tho affecting 1,500 chickens. The Veterinary Department in Phu Tho sterilized the affected areas and set up three checkpoints to prevent the spread of disease. In the Vietnamese province of Quang Tri, 2,200 ducks from 2 breeding farms were discovered to be infected with bird flu. All of the ducks were culled by the Quang Tri Veterinary Department to again prohibit the spread of the disease. +

+

+ Vietnam has discovered a vaccine-resistant strain of highly pathogenic avian influenza occurring in its Northern provinces. As a result, the planned launch of the Vietnamese Government’s poultry vaccination for the nation’s 290 million ducks and chickens will be postponed until an effective vaccine is developed. Since 2003, 63 million poultry have been culled in Vietnam to prevent the spread of disease. Out of 119 human cases of H5N1 bird flu in Vietnam, 59 have been fatal. With investment of over $40 million from the United States Agency for International Development (USAID) and the technical support from the United Nation’s Food and Agriculture Organization (FAO), Nguyen Tung, deputy director of the national diagnosis center, stated that Vietnam now has an updated laboratory network in place to combat the H5N1 virus. +

+

+ + Germany (LPAI) + + . In July, in the German state of Lower Saxony, one farm experienced an outbreak of H7N7 low pathogenic avian influenza. A bird tested positive for the virus and all 190 birds were destroyed to hinder the spread of disease. The source of the outbreak remains unknown, and control measures including quarantine, movement control, screening, zoning, and disinfection have been implemented. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_08_05.html b/data/flu-report-html/usgs_avian_flu_report_2011_08_05.html new file mode 100644 index 0000000..6fd1bc6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_08_05.html @@ -0,0 +1,2060 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, August 5 +

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+ + H5N1 in Poultry +
+ Cambodia +
+
+ . Last month in two villages of the Banteay Meanchey province of Cambodia, 100 birds died from H5N1 bird flu. To prevent the spread of disease, 22 ducks and 458 chickens were culled. Control measures include movement control and disinfection of affected areas. In addition, the Phnom Tamao Zoo in the Takeo province of Cambodia is maintaining quarantine around zoo ponds where outbreaks of bird flu killed 30 birds last month. The area has been sprayed with disinfectant, several bird carcasses were sent to the National Veterinary Institute for testing, and zoo staff with the National Veterinary Institute spent two weeks surveying nearby villages for outbreaks to further prohibit the spread of disease. +

+

+ + Vietnam + + . In the Nghe An province of Vietnam, 5 villages have experienced outbreaks of H5N1 highly pathogenic avian influenza between July 17 and July 27. Out of 9 deaths and 1,494 cases of bird flu, 2,517 birds have been culled to prevent the spread of disease. The source of the outbreaks remains unknown. Control measures taken include quarantine, movement control, and disinfection. Measures yet to be applied in response to the outbreaks include screening, zoning, and vaccination. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . In the Banteay Meanchey Province of Cambodia, a 4-year-old girl contracted H5N1 bird flu last month after a local village outbreak of H5N1 bird flu. She was reported to have had exposure to dead poultry and died on July 20 from complications of the disease. She is the 17th person in Cambodia to be infected with H5N1 bird flu and the 15th to die from the disease. The National and local Rapid Response Teams are conducting an investigation of the outbreak. Thirteen contacts in the affected village were tested for A/H5N1 bird flu all with negative results. The local health center and hospital will continue to monitor for influenza-like illness and severe acute respiratory infections for two weeks. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_08_11.html b/data/flu-report-html/usgs_avian_flu_report_2011_08_11.html new file mode 100644 index 0000000..b3906c9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_08_11.html @@ -0,0 +1,2066 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H5N1 in Wild birds +
+ Canada +
+
+ . The Canadian Food Inspection Agency has issued an advance contract notice for companies interested in participating in a study to detect levels and patterns of bird flu in Canada. About 600 dabbling ducks and 2,000 various aquatic birds will be tested from different Canadian provinces at a lab in Winnipeg with results stored in a national database. Soren Alexandersen, executive director of the CFIA’s National Center for Foreign Animal Disease, stated that it is important to track avian influenza strains and use this background information in the event of a possible poultry infection or a public health risk. The survey, funded by both Canadian and U.S. governments, offers an initial $250,000 contract with another $500,000 for two more years if the study is extended. +

+

+ + South Africa + + . Throughout June into early July, nine ostrich farms in the Western Cape Province of South Africa encountered outbreaks of H5N2 highly pathogenic avian influenza. The virus was detected through routine surveillance but tested negative on PCR (Polymerase Chain Reaction). Additional PCR tests were conducted and infection was then confirmed. So far, 14 ostriches have been destroyed and an additional 1,186 have been slaughtered out of a total of 1,706 cases. The source of the outbreaks remains unknown, but implemented control measures include stamping out, quarantine, and screening. +

+

+ + USA + + . Due to high temperatures in July, a turkey flock in Minnesota suffered a heat-related death loss of 2,500 turkeys. Originally thought to be associated with low pathogenic avian influenza H7N9 subtype, samples were sent to the University of Minnesota Veterinary Diagnostic Laboratory. Their findings listed the birds’ deaths due to heat stress and not avian influenza. The flock of turkeys has been retested several times throughout the month of July with all test results negative for avian influenza. The flock was depopulated on August 1, and cleaning and disinfection were scheduled for August 4. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . In the Demnhoor district of Egypt, a 6-year-old girl developed symptoms of bird flu and was hospitalized on July 12. She was diagnosed with H5N1 highly pathogenic influenza, treated with oseltamivir, an antiviral medication, recovered and was discharged from the hospital on July 30. Investigations indicate that the 6-year-old had exposure to poultry suspected to be infected with bird flu. Out of 151 cases of human infection of bird flu in Egypt, 52 have been fatal. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_08_19.html b/data/flu-report-html/usgs_avian_flu_report_2011_08_19.html new file mode 100644 index 0000000..b338d50 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_08_19.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ + older + + +

+ Avian Influenza Archive from Aug 19, 2011 +

+
+ + newer + +
+

+ News Update, August 19 +

+
+

+ + H5N1 in Poultry +
+ Egypt +
+
+ . An outbreak of highly pathogenic avian influenza occurred in the Egyptian governorate of Beni Suef this month. Both chicken and ducks tested positive for H5N1 on August 14 at the National Laboratory for Veterinary Quality Control on Poultry Production. Out of 35 chicken and ducks, 33 died, and all 35 birds were destroyed to prevent the spread of disease. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . In the West Kalimantan province of Indonesia, a 70-year-old man has been treated for bird flu since August 11 at Abdul Azis hospital. According to the man’s family, the chickens he and several neighbors raised had died, and he had handled the dead chickens. Two months later, the man began to experience symptoms of bird flu, such as difficulty breathing and a fever, and was taken to the hospital. Dr. Dewa, spokesman for Abdul Azis hospital, confirmed this stating the patient developed a fever and coughing that lasted 4 days. Although the man’s condition has improved, he is still under observation and treatment at the hospital. Observation of the man’s contacts and neighborhood is also ongoing. +

+

+ News Update, August 11 +

+
+

+ + H5N1 in Wild birds +
+ Canada +
+
+ . The Canadian Food Inspection Agency has issued an advance contract notice for companies interested in participating in a study to detect levels and patterns of bird flu in Canada. About 600 dabbling ducks and 2,000 various aquatic birds will be tested from different Canadian provinces at a lab in Winnipeg with results stored in a national database. Soren Alexandersen, executive director of the CFIA’s National Center for Foreign Animal Disease, stated that it is important to track avian influenza strains and use this background information in the event of a possible poultry infection or a public health risk. The survey, funded by both Canadian and U.S. governments, offers an initial $250,000 contract with another $500,000 for two more years if the study is extended. +

+

+ + South Africa + + . Throughout June into early July, nine ostrich farms in the Western Cape Province of South Africa encountered outbreaks of H5N2 highly pathogenic avian influenza. The virus was detected through routine surveillance but tested negative on PCR (Polymerase Chain Reaction). Additional PCR tests were conducted and infection was then confirmed. So far, 14 ostriches have been destroyed and an additional 1,186 have been slaughtered out of a total of 1,706 cases. The source of the outbreaks remains unknown, but implemented control measures include stamping out, quarantine, and screening. +

+

+ + USA + + . Due to high temperatures in July, a turkey flock in Minnesota suffered a heat-related death loss of 2,500 turkeys. Originally thought to be associated with low pathogenic avian influenza H7N9 subtype, samples were sent to the University of Minnesota Veterinary Diagnostic Laboratory. Their findings listed the birds’ deaths due to heat stress and not avian influenza. The flock of turkeys has been retested several times throughout the month of July with all test results negative for avian influenza. The flock was depopulated on August 1, and cleaning and disinfection were scheduled for August 4. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . In the Demnhoor district of Egypt, a 6-year-old girl developed symptoms of bird flu and was hospitalized on July 12. She was diagnosed with H5N1 highly pathogenic influenza, treated with oseltamivir, an antiviral medication, recovered and was discharged from the hospital on July 30. Investigations indicate that the 6-year-old had exposure to poultry suspected to be infected with bird flu. Out of 151 cases of human infection of bird flu in Egypt, 52 have been fatal. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_08_29.html b/data/flu-report-html/usgs_avian_flu_report_2011_08_29.html new file mode 100644 index 0000000..0b77d24 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_08_29.html @@ -0,0 +1,2100 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
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+ + older + + +

+ Avian Influenza Archive from Aug 29, 2011 +

+
+ + newer + +
+

+ News Update, August 29 +

+
+

+ + H5N1 in Humans +
+ Cambodia +
+
+ . The Ministry of Health announced a confirmed case of H5N1 bird flu in a human on August 19. A 6-year-old girl from Kampong Cham Province developed symptoms on August 7, was admitted to Kantha Bopha Children Hospital in Phnom Penh on August 12, and died on August 14. There have been reports of poultry dying in her village and the girl had reportedly been exposed to sick poultry. This is the 18th case of human infection with H5N1 in Cambodia and the 16th fatality since the disease first broke out. +

+

+ News Update, August 19 +

+
+

+ + H5N1 in Poultry +
+ Egypt +
+
+ . An outbreak of highly pathogenic avian influenza occurred in the Egyptian governorate of Beni Suef this month. Both chicken and ducks tested positive for H5N1 on August 14 at the National Laboratory for Veterinary Quality Control on Poultry Production. Out of 35 chicken and ducks, 33 died, and all 35 birds were destroyed to prevent the spread of disease. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . In the West Kalimantan province of Indonesia, a 70-year-old man has been treated for bird flu since August 11 at Abdul Azis hospital. According to the man’s family, the chickens he and several neighbors raised had died, and he had handled the dead chickens. Two months later, the man began to experience symptoms of bird flu, such as difficulty breathing and a fever, and was taken to the hospital. Dr. Dewa, spokesman for Abdul Azis hospital, confirmed this stating the patient developed a fever and coughing that lasted 4 days. Although the man’s condition has improved, he is still under observation and treatment at the hospital. Observation of the man’s contacts and neighborhood is also ongoing. +

+

+ News Update, August 11 +

+
+

+ + H5N1 in Wild birds +
+ Canada +
+
+ . The Canadian Food Inspection Agency has issued an advance contract notice for companies interested in participating in a study to detect levels and patterns of bird flu in Canada. About 600 dabbling ducks and 2,000 various aquatic birds will be tested from different Canadian provinces at a lab in Winnipeg with results stored in a national database. Soren Alexandersen, executive director of the CFIA’s National Center for Foreign Animal Disease, stated that it is important to track avian influenza strains and use this background information in the event of a possible poultry infection or a public health risk. The survey, funded by both Canadian and U.S. governments, offers an initial $250,000 contract with another $500,000 for two more years if the study is extended. +

+

+ + South Africa + + . Throughout June into early July, nine ostrich farms in the Western Cape Province of South Africa encountered outbreaks of H5N2 highly pathogenic avian influenza. The virus was detected through routine surveillance but tested negative on PCR (Polymerase Chain Reaction). Additional PCR tests were conducted and infection was then confirmed. So far, 14 ostriches have been destroyed and an additional 1,186 have been slaughtered out of a total of 1,706 cases. The source of the outbreaks remains unknown, but implemented control measures include stamping out, quarantine, and screening. +

+

+ + USA + + . Due to high temperatures in July, a turkey flock in Minnesota suffered a heat-related death loss of 2,500 turkeys. Originally thought to be associated with low pathogenic avian influenza H7N9 subtype, samples were sent to the University of Minnesota Veterinary Diagnostic Laboratory. Their findings listed the birds’ deaths due to heat stress and not avian influenza. The flock of turkeys has been retested several times throughout the month of July with all test results negative for avian influenza. The flock was depopulated on August 1, and cleaning and disinfection were scheduled for August 4. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . In the Demnhoor district of Egypt, a 6-year-old girl developed symptoms of bird flu and was hospitalized on July 12. She was diagnosed with H5N1 highly pathogenic influenza, treated with oseltamivir, an antiviral medication, recovered and was discharged from the hospital on July 30. Investigations indicate that the 6-year-old had exposure to poultry suspected to be infected with bird flu. Out of 151 cases of human infection of bird flu in Egypt, 52 have been fatal. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_09_15.html b/data/flu-report-html/usgs_avian_flu_report_2011_09_15.html new file mode 100644 index 0000000..7a9649a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_09_15.html @@ -0,0 +1,2113 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Sep 15, 2011 +

+
+ + newer + +
+

+ News Update, September 8 +

+
+

+ + H5N1 in Wild birds +
+ Philippines +
+
+ . The Environment Secretary in the Philippines, Ramon Paje, has warned the public away from touching birds as the bird flu virus can be transmitted through inhalation or contact with bird discharges or feces. This appeal was made due to the recent report by the Food and Agriculture Organization that there may be a resurgence of bird flu due to a mutant strain of the H5N1 virus in nearby China and Vietnam. The Environment Secretary also warned communities to stay away from dead birds and to report unusual wild bird deaths to the Protected Areas and Wildlife Bureau, the Department of Environmental and Natural Resources, Department of Agriculture, and Department of Health. The ban on importing wild birds into the Philippines from bird-flu infected countries, begun in January 2004, remains in effect to help stem the introduction of the virus into the country. Philippines has consistently remained free of H5N1. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . In the Manikganj District of Bangladesh, an outbreak of highly pathogenic avian influenza was reported on September 6. After 6 dead chickens tested positive for H5N1 bird flu at the Bangladesh Livestock Research Institute, another 544 chickens were culled to prevent the spread of disease. +

+

+ + Vietnam + + . +
+ Four separate outbreaks of highly pathogenic avian influenza occurred in the latter half of August in three separate provinces of Vietnam. Two outbreaks were reported in the Quang Tri Province, one in the Thai Binh Province, and lastly, one in the Quang Ngai Province. Samples from each outbreak tested positive for H5N1 bird flu. Out of a total of 3258 chickens and ducks, 871 died and another 2387 birds were culled to inhibit the spread of the virus. Statistics on birds affected and control measures taken for the one of the outbreaks in the Quang Tri Province have not been reported at this time. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . In the Yogyakarta Province of Indonesia, a 35 year-old-mother and her two children, an 11-year-old and 2.5-year-old, have been under treatment in the bird flu isolation unit of Sardjito Hospital since the beginning of September. After exhibiting symptoms of bird flu, all 3 patients were referred to the hospital, and samples have been sent to the Ministry of Health Laboratory for confirmation. The patients, though improving, remain under treatment and will not be charged a medical fee as bird flu suspect patients. +

+

+ News Update, September 1 +

+
+

+ + H5N1 in Wild Birds & Poultry + +
+ The Food and Agriculture Organization (FAO) has urged heightened readiness and surveillance against a possible resurgence of H5N1 highly pathogenic avian influenza, as wild bird migrations are expanding areas of infection and a mutant strain is spreading in China and Vietnam. Since 2008, there has been geographic expansion of H5N1 due to wild bird migrations to countries that have been virus-free for several years, such as Israel, the Palestinian Territories, Bulgaria, Romania, Nepal, and Mongolia. FAO’s chief veterinary officer, Juan Lubroth, said that wild birds may introduce the virus but poultry production and marketing spread the virus. Although outbreaks declined from an annual high of 4000 to 302 by mid-2008, there has been an increase in outbreaks with 800 cases reported in 2010-2011. Furthermore, the development of a mutant strain of the virus that is not curbed by current vaccines means there could be a flare-up of infection of H5N1 bird flu this coming fall and winter. +
+

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . In the Chuadanga District of Bangladesh, two poultry farms experienced outbreaks of H5N1 bird flu. At least 22,045 chickens were culled and 8,500 eggs destroyed to prevent the spread of disease. After chickens were found dead, both farms sent samples for testing to the Central Diseases Investigation Laboratory in Dhaka for analysis and received confirmation of H5N1 infection. Both farms will remain under observation for three months, and the trade of chickens has been banned within one and half kilometers of each infected farm. +

+

+ In addition, an outbreak of highly pathogenic avian influenza was observed in the Naogaon District of Bangladesh. Late in August, chickens tested positive for H5N1 bird flu at the Bangladesh Livestock Research Institute. Out of a total of 1,800 chickens, 500 died and 1,300 were culled to prevent the spread of disease. +

+

+ + Indonesia + + . In the West Sulawesi Province of Indonesia, the Livestock Service of Marjene confirmed the death of over 500 chickens in one sub-district was due to H5N1 bird flu. The virus may have spread to other villages in the same sub-district. To combat the spread of the disease, the regional government and local farmers have culled birds suspected of bird flu. +

+

+ + Vietnam + + . On August 30 national authorities observed an outbreak of H5N1 highly pathogenic avian influenza in the Quang Ngai Province of Vietnam. Both chicken and ducks died, totaling 690, while an additional 2,800 chicken and ducks were destroyed to prohibit the spread of the virus. Earlier in August, two outbreaks of H5N1 bird flu were observed in the Quang Tri Province of Vietnam. Statistics on birds affected and control measures taken have not been reported at this time. +

+

+ + H5N1 in Humans + +
+ The World Health Organization (WHO) is aware of recent reports that a new strain of H5N1 bird flu is circulating among poultry in parts of Asia. The WHO Global Influenza Surveillance and Response system recognized the new strain or clade of the H5N1 virus in February 2011. This evolution of the H5N1 virus poses no increased risk to public health as influenza viruses constantly evolve, especially in areas where they circulate regularly in poultry. WHO routinely assesses the public health risk from all animal influenza viruses, and human cases of highly pathogenic avian influenza infection remain rare events and occur in areas where humans might be exposed to infected birds or contaminated environments. +
+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_09_21.html b/data/flu-report-html/usgs_avian_flu_report_2011_09_21.html new file mode 100644 index 0000000..5be8f41 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_09_21.html @@ -0,0 +1,2064 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
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+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Sep 21, 2011 +

+
+ + newer + +
+

+ News Update, September 20 +

+
+

+ + H5N1 in Poultry +
+ Bangladesh +
+
+ . From August 21 through September 6, commercial poultry farms in Bangladesh experienced four separate outbreaks of H5N1 bird flu. A total of 2,026 birds died and an additional 23,889 birds were culled to prevent the spread of disease. The source of the outbreaks remains unknown, and control measures applied include movement control and disinfection. +

+

+ + Cambodia + + . In the Banteay Meanchey Province of Cambodia, an outbreak of highly pathogenic avian influenza occurred on August 25. After 156 birds died, an additional 50 chickens and 30 ducks were culled to prohibit further circulation of the virus. The National Veterinary Research Institute conducted an investigation of the infected areas from September 1 to September 12, but the source of the outbreak remains unknown. Control measures taken include disinfection and movement control. +

+

+ + India + + . On August 29, a village in the Indian state of Assam experienced an outbreak of H5N1 bird flu. Out of 34,313 birds, 1,436 died and another 15,409 birds were culled to prevent the spread of the virus. Control measures applied include quarantine, movement control, and screening. Although the source of the outbreak is unknown, surveillance, disinfection, and closure of the poultry markets in the infected zone have been implemented. +

+

+ + Indonesia + + . On the Indonesian island of Java, a village recently encountered an outbreak of H5N1 bird flu among chickens. In the outbreak, 41 chickens died, and when the birds tested positive for highly pathogenic avian influenza, the Participatory Disease Surveillance and Response team conducted control measures of disinfection, burning and burial of the dead chickens, and vitamin administration to healthy chickens. The source of infection is thought to be from travelling chicken sellers. Similarly, an outbreak of H5N1 bird flu in August in a different village on Java was due to chickens purchased that had not been submitted for quarantine inspection. +

+ +
+

+ + Back + +

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_09_23.html b/data/flu-report-html/usgs_avian_flu_report_2011_09_23.html new file mode 100644 index 0000000..196bdf6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_09_23.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 23, 2011 +

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+

+ News Update, September 23 +

+
+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . University of Hong Kong microbiologist Malik Peiris states that wild birds are responsible for spreading the mutant strain of H5N1 bird flu. Peiris says this is the second time wild birds have introduced the virus to poultry in China, as the first outbreak of bird flu was in the Qinghai Lake area in 2005. In response, Hong Kong Bird Watching Society director Mike Kilburn, claims that while it is reasonable to monitor wild birds for the virus, wild birds are not responsible for transmitting the virus to humans. Kilburn believes that the closure of Mai Po Nature Reserve when dead birds were found perpetuates the belief that wild birds cause human infection of the bird flu virus. He goes on to state that none of the 30,000 wild birds who visit the reserve have ever tested positive for H5N1 bird flu despite extensive monitoring. +

+

+ + Netherlands + + . In the Dutch province of Drenthe, low pathogenic avian influenza was found in 83 swans scheduled to be exported. According to European regulations, kept animals not defined as poultry need not be culled. Since the swans are located in an area void of poultry farms, the swans will remain in quarantine under supervision of the Food and Consumer Product Safety Authority until the infected birds no longer excrete the bird flu virus. To prevent the disease from spreading, the transportation of live birds and eggs has been prohibited within 1 kilometer of the swans’ holding area. +

+

+ + H5N1 in Poultry +
+ India +
+ . On September 14 in the Indian state of West Bengal, 849 birds found dead in a village were reported to the local Animal Resources Development (ARD). After the birds tested positive for H5N1 bird flu, an estimated 51,000 hens and ducks will be culled within a 3 kilometer radius of the infected zone to prevent the spread of the virus. As the culling area of 3 kilometers includes portions of Bangladesh, the ARD will be in communication with Bangladesh officials. To further stem the spread of disease, closure of poultry markets and prohibition on sale and transportation of poultry products within 10 kilometers of the infected zone as well as disinfection of the affected area are part of the surveillance campaign. Other control measures include quarantine and screening. The source of the outbreak remains unknown. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 44-year-old poultry delivery man from the West Java Province of Indonesia is under treatment in an isolation unit of the Hasan Sadikin hospital for suspected bird flu. After the patient had contact with dead birds, he developed a runny nose, sore throat, and coughing. The hospital treated him with Tamiflu and has sent swab samples to the Ministry of Health laboratory for confirmation of bird flu. The man remains in recovery. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_09_30.html b/data/flu-report-html/usgs_avian_flu_report_2011_09_30.html new file mode 100644 index 0000000..bfc53c4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_09_30.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Sep 30, 2011 +

+
+ + newer + +
+

+ News Update, September 29 +

+
+

+ + H5N1 in Wild birds +
+ Experimental Mutations +
+
+ . Ron Fouchier of the Erasmus Medical Centre in the Netherlands recently reported that as few as five mutations in two genes allows the H5N1 virus to become airborne and spread between ferrets without reducing the lethal effects of the virus. H5N1 bird flu evolved in poultry and spread across Eurasia in 2005-2006, but even now, no strain of the H5N1 virus spreads readily among mammals (including humans). Fouchier states that since the mutations used in the experiments have all occurred separately in birds, the mutations could occur together. University of Hong Kong flu virologist, Malik Peiris, believes this means a strain of H5N1, that is transmissible between humans, could develop in birds. Peter Palese, a flu specialist at Mount Sinai Medical Center in New York City, disagrees saying ferrets are not humans and the H5N1 bird flu has failed to mutate into a form that can jump between people. However, Jeffery Tubenberger of the U.S. National Institutes of Health in Maryland, who studies how bird flu became the pandemic of 1918, claims that just because the H5N1 virus has not adapted to spreading easily among mammals does not mean the virus cannot adapt in the future and spread through humans. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . After poultry farmers observed dozens of dead chickens in the South Sulawesi Province of Indonesia, tests conducted by the Veterinary Disease Investigation Center showed the chickens were infected with H5N1 bird flu. To prevent the spread of disease, farmers burned the dead chickens and disinfected the surviving chickens, while officials are isolating the affected area. +

+ +
+

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_10_07.html b/data/flu-report-html/usgs_avian_flu_report_2011_10_07.html new file mode 100644 index 0000000..98ecc85 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_10_07.html @@ -0,0 +1,2046 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Oct 07, 2011 +

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+ News Update, October 7 +

+
+

+ + H5N1 in Poultry +
+ Indonesia +
+
+ . The Livestock Service in Central Sulawesi province confirmed that the recent sudden death of chickens was from H5N1 bird flu. The virus was found in samples from dead chickens from several sub-districts. Examination was conducted in field and confirmed by the veterinary disease investigation center in Maros. Livestock service officers disinfected the infected cages and those in the surrounding area to control the spread of the disease. +

+ +
+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_10_18.html b/data/flu-report-html/usgs_avian_flu_report_2011_10_18.html new file mode 100644 index 0000000..30140d5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_10_18.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Oct 18, 2011 +

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+ News Update, October 14 +

+
+

+ + H5N1 in Wild birds + +

+

+ + H5N1 in Poultry +
+ Indonesia +
+
+ . In the week following the announcement of two human cases in Bali, two sub-districts reported bird flu outbreaks in poultry in the adjacent island of Lombok. In one village more than 350 chickens had died and the livestock agency was contacted. Some villagers reported killing and eating birds that had become ill, while chickens already found dead were buried. The Animal Diseases Eradication Team sprayed disinfectant, took blood samples and quarantined the infected areas. Health Minister Endang Rahayu Sedyaningsih encouraged people to stay away from birds, wash hands if they came into contact with birds, and warn children not to touch dead birds. +

+

+ + Iran + + . In the Mazandaran Province of Iran, two outbreaks of highly pathogenic avian influenza were reported last month. Out of 2,682 birds, 345 died while an additional 2,337 were culled to prevent the spread of disease. While the source of the outbreaks is currently under investigation, control measures taken include quarantine, movement control as well as control of wildlife reservoirs, screening, zoning, and disinfection. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . On the island of Bali in Indonesia, two siblings died from H5N1 bird flu on October 9 at Sanglah General Hospital in Denpasar just two days after being admitted to the hospital. The 10-year-old brother and 5-year-old sister were treated at a local health clinic before they were sent to the hospital. The family operates a catering service out of the home including the slaughtering and processing of chickens and both children were reported to have had contact with dead chickens before developing bird flu symptoms. Bali Health Official, Nyoman Sutedja, claims the family failed to report the children’s bird flu symptoms in a timely manner, worsening the children’s condition, since Tamiflu, the medication used to treat bird flu, is only effective within the first 24 hours of infection. The source of the infection remains unknown, but the head of the Bali Animal Husbandry Office encouraged districts to enhance surveillance and spraying operations to help prohibit the spread of the virus. +

+

+ Separately, the World Health Organization confirmed H5N1 infection in a 1-year-old girl from the Jakarta Province of Indonesia who died on August 25. After developing symptoms of bird flu, the infant was treated at a health care facility on August 8 and eventually admitted to a private hospital on August 15. Possible sources of infection include a family member that worked with poultry products, including slaughtering, as well as poultry in the neighborhood of the victim, although there were no deaths of chickens reported within the last 14 days. Out of 179 total cases of bird flu infection in humans, 147 have been fatal. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_10_24.html b/data/flu-report-html/usgs_avian_flu_report_2011_10_24.html new file mode 100644 index 0000000..196d210 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_10_24.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Oct 24, 2011 +

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+ News Update, October 20 +

+
+

+ + H5N1 in Poultry +
+ Indonesia +
+
+ . Highly pathogenic avian influenza outbreaks occurred in three separate villages (Penujak , Peringgarata and Semayan) on Lombok Island in Indonesia. At least 1,900 dead chickens were reported during the outbreaks and samples were sent to laboratories in Mataram and Bali. The Livestock and Animal Health Service confirmed the birds were infected with H5N1 bird flu. The Livestock and Animal Health Service is concerned that unofficial ports on Lombok are importing animals without quarantine inspection, causing the bird flu virus to spread. However, the exact source of the three outbreaks on Lombok remains unknown. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . In relation to the H5N1 bird flu outbreaks on Lombok Island in Indonesia, four patients continue to be treated for possible bird flu infection at West Nusa Tenggara General Hospital in Central Lombok. Three of the patients are currently recovering, a 5-month-old baby, an 11-month-old boy and 53-year-old man, while the fourth patient, a 10-year-old girl, remains under close observation as she is still exhibiting flu symptoms. All of the patients’ preliminary test results were negative for the H5N1 strain of bird flu, but doctors are waiting on further tests from Jakarta before clearing them to leave the hospital. All of the patients live within one kilometer of each other in Central Lombok, an area that has been experiencing bird flu outbreaks among chickens for the past few weeks. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_10_31.html b/data/flu-report-html/usgs_avian_flu_report_2011_10_31.html new file mode 100644 index 0000000..5f82444 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_10_31.html @@ -0,0 +1,2046 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Oct 31, 2011 +

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+ News Update, October 27 +

+
+

+ + H5N1 in Poultry +
+ Indonesia +
+
+ . Highly pathogenic avian influenza outbreaks have been confirmed in three areas of Indonesia. On the island of Lombok, both West Nusa Tenggara and East Nusa Tenggara districts reported more than 20,000 chickens dying since the beginning of September. Samples of the dead chickens taken from these areas to the Veterinary Disease Center in Denpasar, Bali tested positive for H5N1 bird flu. In West Java, an additional outbreak of H5N1 bird flu was reported in the Bekasi Regency with at least 425 chickens dead from infection. The Animal Husbandry, Fisheries and Marine Service took samples, which tested positive for highly pathogenic avian influenza. Most of the dead chickens were burned, and the Head of Animal Health in Bekasi asked farmers to cage chickens to help stem the spread of the virus and prevent human contact with poultry. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_11_17.html b/data/flu-report-html/usgs_avian_flu_report_2011_11_17.html new file mode 100644 index 0000000..b64b2da --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_11_17.html @@ -0,0 +1,2101 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, November 17 +

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+

+ + H5N1 in Wild birds +
+ United States +
+
+ . From September 1 through November 3, 146 dead seals were washed-up on the shores of Maine, New Hampshire, and Massachusetts, most of which were less than a year old. This number is three times higher than normal for seal mortality. The National Oceanic and Atmospheric Administration (NOAA) confirmed that preliminary tests on 5 dead seals yielded positive results for the influenza A virus. Due to these results, a formal Unusual Mortality Event has been declared and an expanded investigation into the seal deaths will be conducted to identify and characterize the specific type of influenza A virus found in the seals. While the NOAA determines whether the dead seals are a potential human health risk, people and their pets have been warned to stay away from stranded seals and are requested to report any future sightings of dead seals. +

+

+ In relation to the seal deaths, a large amount of birds, mainly seagulls, have been found dead on beaches in Maine, New Hampshire and Massachusetts over a similar time period. Testing the dead birds for toxins, such as algae blooms, and well as other causes is being conducted by the NOAA in conjunction with Woods Hole Oceanographic Institutions and the New Hampshire Veterinarian Diagnostic Lab. Tissue samples will also be examined for signs of infectious and non-infectious diseases and trauma. +

+

+ + Japan + + . Avian influenza infection has been confirmed in a dead tundra swan from the Shimane Prefecture of Japan. This is the first confirmation of avian influenza infection in Japan this season. The subtype and pathogenicity of the virus has yet to be determined. The local government is testing to determine whether the virus is a highly virulent strain. +

+

+ + H5N1 in Poultry +
+ Cambodia +
+ . In the Battambang Province of Cambodia, an outbreak of highly pathogenic avian influenza was reported earlier this month on a farm. Out of 5,206 birds, 1,050 died while an additional 4,156 chickens, ducks, geese and broilers were culled to prevent the spread of disease. The source of the outbreak remains unknown. Control measures applied include movement control, dipping, and spraying. +

+

+ + India + + . Nearly 500 chickens have died recently in the Burdwan District of West Bengal in India. The dead chickens, both from poultry farms and residences, are suspected of being infected with the H5N1 virus, and the animal husbandry officials have been notified for inspection and sample collection of the birds. +

+

+ + Bangladesh + + . An outbreak of bird flu was reported in the Rajbari District of Pakistan November 14. After several poultry deaths, the farm owner, Dipak Kumar Kundu, notified the district livestock officer who prescribed medical treatment. As poultry continued to die despite the medication, the farmer sent chickens to a laboratory in Dhaka for testing, who confirmed the deaths were due to bird flu. At least 11,230 birds and 43,000 eggs were culled to prohibit the spread of the disease. +

+

+ + Vietnam + + . Ducks on a farm in the Mekong Delta Province of Vietnam tested positive for H5N1 bird flu. The Department of Animal Health culled 1,000 unvaccinated duck chicks aged 46 days to prevent the spread of the virus. +

+

+ + South Africa + + . Outbreaks of highly pathogenic avian influenza H5N2 virus were reported on three separate farms in South Africa, one in the Eastern Cape Province and two outbreaks in the Western Cape Province. Out of 1,760 birds, 96 were reported dead and 414 were slaughtered resolving one of the outbreaks. Two of the outbreaks have not yet been resolved. The source of the infection remains unknown, and control measures include quarantine and screening. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Egypt notified the World Health Organization that a 1-year-old male from the Mahala district has recovered from the H5N1 virus. He developed symptoms September 17, was hospitalized September 21, and was discharged from the hospital September 25. The patient did have contact with poultry before developing symptoms. Out of 152 human cases of highly pathogenic avian influenza infection in Egypt, 52 have been fatal. +

+

+ + Indonesia + + . In the Bali Province of Indonesia, the Ministry of Health announced the death of a 29-year-old female due to H5N1 bird flu. She developed symptoms on October 10 and died on October 17. She was the mother of the two siblings who also died of H5N1 infection on October 9. All three lived in an area that raised poultry and many had died prior to her sons’ developing symptoms. Of the 182 human cases of bird flu in Indonesia, 150 have been fatal. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_11_23.html b/data/flu-report-html/usgs_avian_flu_report_2011_11_23.html new file mode 100644 index 0000000..0d2444e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_11_23.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Nov 23, 2011 +

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+ News Update, November 23 +

+
+

+ + H5N1 in Poultry + +
+ + Indonesia + + . In the South Sulawesi province of Indonesia, outbreaks of H5N1 bird flu have killed approximately 14,000 chickens in three sub-districts. The first outbreak began in the Watang Sawitto sub-district killing 6,500 chickens, and then spread killing an additional 7,500 chickens in the Tellung Palie of Suppa and Lanrisang sub-districts. The Livestock Service culled and buried the infected chickens to prevent the spread of the virus. +
+

+

+ + Taiwan + + . An outbreak of low pathogenic avian influenza was reported November 10 in the Hsinchu County of Taiwan. The infection was detected on a native chicken breeder farm during active surveillance, and tests conducted on November 15 at the Animal Health Research Institute confirmed the chickens were infected with the H5N2 strain. Movement restriction was immediately implemented, while clinical and epidemiological investigation of surrounding poultry farms is in progress. Additional control measures include quarantine, screening, zoning, and disinfection. The source of the outbreak remains unknown. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_12_06.html b/data/flu-report-html/usgs_avian_flu_report_2011_12_06.html new file mode 100644 index 0000000..cc929bd --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_12_06.html @@ -0,0 +1,2093 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Dec 06, 2011 +

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+ News Update, December 6 +

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+

+ Two research teams, one led by virologist Ron Fouchier of Erasmus Medical Center and one led by virologist Yoshihiro Kawaoka at the University of Wisconsin – Madison, have found that it is possible for H5N1 to mutate in such a way that it would transmit easily between mammals and remain deadly. The Fouchier team created a mutated strain of H5N1 bird flu that was both easily transmissible and deadly in ferrets, an animal whose response to influenza viruses mimics that of humans. The research has caused a controversy, because, although it serves public safety by identifying the mutations necessary for H5N1 to become a pandemic virus in humans, the research could also be used by bioterrorists to create a deadly biological weapon. The research has been submitted for publication and is under review by the U.S. National Science Advisory Board for Biosecurity. Many scientists support the research and believe that the public benefits outweigh the danger. They suggest that this research can be safely published as long as key details are left out so that the information cannot be used to create a biological weapon. But others believe that the research is too dangerous and should not have been conducted in the first place. They suggest that it is time for potentially dangerous studies to be reviewed and require approval before they begin. +

+

+ H5N1 in Wild birds +

+

+ + India + +
+ A large number of crows have died in cities and towns across the state of Jharkand since mid-November. The cause of death is unknown, but officials are asking people not to touch or bury the dead birds since they may be carrying a contagious avian virus. An advisory suggests that people should inform the Jharkand Animal Husbandry Department if they see dead birds. “The advisory has been issued considering the deaths of crows in many districts. Expert teams are trying to ascertain the reason behind the deaths of the crows,” animal husbandary department director A.G. Bandhopadhya told reporters.” The team of experts comes from the Indian Veterinary Research Institute of Bhopal. Health Department officials suspect that the birds are infected with H5 and H1 strains of bird flu. +
+

+

+ + Saudi Arabia + +
+ For the third year in a row, Saudi Arabia has banned the hunting of migratory birds. The Saudi Wildlife Authority (SWA) explained that although the country is free from bird-related viruses such as bird flu, they are taking this measure to ensure that no epidemics occur. SWA Secretary-General Bander bin Saud bin Mohammad was among the many government officials and scientists to attend the 10th Meeting of the Conference of the Parties to the Convention on the Conservation of Migratory Species of Wild Animals in Bergen, Norway. This conference discussed urgent conservation needs to address the rapid decline of migratory bird species around the world. The SWA has deployed several teams to track migratory birds during their stay in the region. +

+

+ H5N1 in Poultry +

+

+ + Indonesia + +
+ In the last week of November, thousands of chickens died from H5N1 bird flu in South Sulawesi Province. Individual farmers are taking precautions such as disinfecting their farms after die-offs, but until recently the Livestock Service had not taken measures to control the outbreak. Shortly after, outbreaks were reported in 3 subdistricts of West Java Province. A spokesman of the Livestock Service reported that birds from 5 farms tested positive for H5N1 bird flu and samples from the dead chickens were sent to the Veterinary Disease Investigation Center. Control measures such as disinfection, culling, and vaccination have been implemented. +

+

+ + Nepal + +
+ Only a few months after the government declared Nepal a bird flu-free country, cases of bird flu have been reported in Bhaktapur near the capital Kathmandu. More than 500 chickens have been culled in the area according to the chief of the District Livestock Service Office Bhaktapur, Shiva Bahadur KC. Local people informed the Livestock Office after a number of chickens and ducks had died. After preliminary tests in the Central Veterinary Disease Control Laboratory in Nepal, samples were sent to the UK for final confirmation. Bhaktapur is one of the main poultry production areas in Nepal and the local public has raised health concerns leading to the temporary closing of 22 private schools. +

+

+ + Vietnam + +
+ According to the local Agriculture and Rural Development Department, authorities instructed residents to cull a flock of more than 1,300 ducks and destroy over 9,800 eggs in Dak Lak Province because of infection with H5N1 bird flu. Agencies have sterilized the farm and surrounding areas and are closely monitoring the progress of the epidemic. A local report said that another nearby farmer had earlier noticed signs of the disease but did not report them to officials, instead destroying over 5,000 dead ducks himself. The farm that reported the outbreak had taken in 23 surviving ducks from the other farm, which caused the renewed outbreak. +

+

+ H5N1 in Humans +

+

+ + Egypt + +
+ A case of H5N1 bird flu has been confirmed in a 31-year-old woman from Dakahlia governorate. She developed symptoms on November 10 and was hospitalized on November 16. She is in critical condition and has been placed on a respirator. An investigation into the source of the infection revealed that the patient had handled sick and dead poultry in her backyard. The Egyptian Central Public Health Laboratories confirmed the disease as H5N1 on November 21. Of the 153 cases confirmed in Egypt to date, 52 have been fatal. +
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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_12_16.html b/data/flu-report-html/usgs_avian_flu_report_2011_12_16.html new file mode 100644 index 0000000..6fc6ea5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_12_16.html @@ -0,0 +1,2069 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 16 +

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+ + H5N1 in Wild birds +
+ India +
+
+ . During the last week of November, deaths of between 500 and 1,000 crows were reported in various areas of the eastern state of Jharkhand in India. The National Institute of Virology has found the presence of H5N1 bird flu in the dead crows. In addition, the Institute of Veterinary Research has collected carcasses and is conducting tests to confirm the cause of death of the crows. Residents of Jharkhand claim that the deaths of crows began in September 2011, but the deaths have only recently caught media attention. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . In the Kuhlna Division of Bangladesh, the deaths of 95 chickens were reported this past week. The Bangladesh Livestock Research Institute has confirmed the dead chickens were infected with highly pathogenic avian influenza. An additional 565 chickens were culled to prevent the spread of the disease. +

+

+ + Nepal + + . At the end of November, hundreds of chickens and ducks were culled by Nepalese health workers after an outbreak of bird flu was reported in the capital city, Kathmandu. The outbreak was discovered after a poultry farmer told health officials that 90 of his chickens had died suddenly. Government health official, Narayan Prasad Ghimire, stated over 500 chickens and ducks were slaughtered along with the disposal of dozens of eggs and poultry feed. He went on to say that a rapid response team was mobilized in the infected area on the outskirts of the city to prevent the spread of the virus to other parts of the city. +

+

+ In addition, more than 1,000 chickens have died at various poultry farms in the Udayapur District of Nepal in the past week. The chickens began dying at two local farms in the village of Ghurmi Bazaar and then spread affecting other parts of the village. The cause of death of the chickens could not be diagnosed at the Regional Livestock Health office, so samples were sent to Kathmandu to be tested. Following the deaths, export of chickens from Udayapur to other districts has been banned. +

+

+ + Tibet + + . On December 12, China’s Ministry of Agriculture confirmed an outbreak of bird flu in Tibet. Laboratory tests confirmed that the deaths of 290 birds raised by farmers in the Sangda village were caused by H5N1 bird flu. Authorities have sealed off and sterilized the infected area, and 1,575 birds were culled to prohibit the spread of the virus. A ministry official, who declined to be named, stated that no abnormal physical conditions were reported in people who had close contact with the dead birds. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2011_12_22.html b/data/flu-report-html/usgs_avian_flu_report_2011_12_22.html new file mode 100644 index 0000000..a22668b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2011_12_22.html @@ -0,0 +1,2083 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update, December 22 +

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+

+ + Seals + + . The deaths of more than 162 seals along the coasts of Maine, New Hampshire and Massachusetts, were reported as an unusual mortality event November 3. The Center for Infection and Immunity at Columbia University’s Mailman School of Public Health and the EcoHealth Alliance reported that five of the seal deaths investigated were caused by a bacterial pneumonia brought about by the Influenza A virus, subtype H3N8. These findings were confirmed by the Connecticut Veterinary Diagnostic Laboratory and the virus was isolated at the USGS National Wildlife Health Center. Dr. Hon Ip of the USGS National Wildlife Health Center said on December 20, “This is the first time that a virus similar to the H3N8 avian influenza virus has been associated with a large-scale mortality in marine mammals.” Additional tests on other animals are currently being conducted to find out more information about this virus as well as investigations whether this virus or some other microorganism is involved in the deaths of other seals. H3N8 avian influenza appears to have a low risk of transmission to humans, but a spokesperson for the New England Aquarium has directed people to maintain a safe distance from any seal, alive or dead, this winter. If you see a stranded seal, stay at least 150 feet away, keep dogs leashed and away from animals or carcasses, and call the National Oceanic and Atmospheric Administration Fisheries Service’s stranding hot line at (866) 755-6622. +

+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . The Chiu Lut Sau Memorial Secondary School in Yuen Long closed on Friday, December 16, after a sick black-headed gull found on the school grounds tested positive for H5N1 bird flu. The black-headed gull died on December 13 the day after it was found. The Agriculture, Fisheries & Conservation Department said there were no unusual number of deaths or signs of avian influenza in local poultry farms and wholesale markets. +

+

+ Similarly, a Oriental magpie robin was found dead at the Ju Ching Chu Secondary School in Yuen Long on December 17. The dead robin tested positive for highly pathogenic avian influenza in a preliminary examination. Officers from the Agriculture, Fisheries & Conservation Department have inspected two chicken farms in close vicinity of the school but found no bird flu symptoms. These farms will be put under enhanced surveillance. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . In the Khulna and Dhaka Divisions of Bangladesh, four separate poultry farms experienced outbreaks of highly pathogenic avian influenza from November 12 to December 18. Out of 14,984 susceptible birds on the farms, 1,257 birds died from the disease, while the remaining 13,727 bird were culled to prevent the spread of the virus. The birds tested positive for the H5N1 virus at the Bangladesh Livestock Research Institute and the Field Disease Investigation laboratories. The source of the outbreaks remains unknown. Control measures include movement control of poultry and disinfection of affected premises. +

+

+ + Hong Kong + + . After a chicken that died at a wholesale poultry market in Long Sha, Kowloon tested positive for H5N1 bird flu, the remaining 17,000 chickens at the market were culled to prevent the spread of the disease. Additionally, the Hong Kong government suspended the imports of live chickens from mainland China as well as the trading of live chickens for 21 days to further prohibit the spread of the virus. A government spokesman said it is unknown if the dead chicken was a local chicken or imported from China, adding that the market would be emptied of birds and disinfected. The last two large poultry culling exercises in Hong Kong took place in June 2008. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The World Health Organization was notified by the Ministry of Health and Population of Egypt of two human cases of highly pathogenic avian influenza infection. A mother and child in the Dakahlia Governorate of Egypt developed bird flu symptoms on November 26. The mother, who was 24 weeks pregnant, was admitted to a hospital on December 3, received oseltamivir, but died on December 3. The child was hospitalized on December 2, received oseltamivir, and is currently in stable condition. Prior to infection, the mother and child had exposure to both sick and dead backyard chickens and turkeys. Of the 155 cases of human infection of H5N1 bird flu confirmed in Egypt, 53 have been fatal. +

+

+ + Hong Kong + + . In relation to the wild bird report for Hong Kong above, the 48-year-old woman who picked up the sick black-headed gull later found infected with highly pathogenic avian influenza, without any protection. She developed a fever, sore throat, and diarrhea the next day and was admitted to the Princess Margaret Hospital for isolation and laboratory testing. Her tests produced negative results for the Influenza A virus with all subtypes. The Public Health Laboratory Services Branch is now conducting tests for bird flu on the woman’s 11-year-old son, who recovered from a fever and cough earlier in the week. He was also admitted to Princess Margaret Hospital as a precautionary measure, and his test results are currently pending. +

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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_01_06.html b/data/flu-report-html/usgs_avian_flu_report_2012_01_06.html new file mode 100644 index 0000000..53673d2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_01_06.html @@ -0,0 +1,2086 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 06, 2012 +

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+ News Update, January 6 +

+
+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . This past week, 2 dead black-headed gulls were found in Tuen Mun and Lantau Island of Hong Kong. Both gulls tested positive for H5N1 bird flu. There were no poultry farms within 3 kilometers of the carcasses and a recent survey of the 30 chicken farms in Hong Kong did not find any chickens that were infected with H5N1. Hong Kong raised the bird flu alert to “serious” on December 21 after a dead chicken at a wholesale market tested positive for highly pathogenic avian influenza. As a precaution, 15,569 chickens, 810 pigeons, 1,950 pheasants and 1,122 silky fowls were culled to prevent the spread of the disease, but tests now show none of the culled birds tested were infected with H5N1 bird flu. The source of the dead chicken remains unknown. The Hong Kong government is setting up a system for routine collection of dead birds at the wholesale poultry market for testing, and the Agriculture, Fisheries and Conservation Department will be on constant duty gathering information from poultry traders about dead birds. +

+

+ + H5N1 in Poultry +
+ Egypt +
+ . Between December 25 and January 2, Egypt experienced 5 separate outbreaks of highly pathogenic avian influenza among poultry in the governorates of Kafr el-Sheikh, Al Qalyubiyah, Al Minufiyah, Al Gharbiyah, and Dumyat. All of the 110 ducks and 70 chickens infected were culled to prevent the spread of the virus. The birds tested positive for H5N1 bird flu at the National Laboratory for Veterinary Quality Control on Poultry Production. +

+

+ + Bangladesh + + . In the Meherpur district of Bangladesh, over 3,000 poultry were culled and 1,300 eggs destroyed after dead chickens tested positive for H5N1 bird flu. The infection was limited to one poultry farm, but other farms have been alerted about possible bird flu infection. The owner of the affected poultry farm is the president of the District Poultry Farm Association, had noticed a chicken dying on December 24 and took it in for testing the same day. More specimens were collected the next day and testing at Dhaka confirmed the birds were infected with highly pathogenic avian influenza. +

+

+ + Vietnam + + . A household raising 450 chickens in the province of Hau Glang, Vietnam, reported 10 dead chickens to local veterinarians. Samples of the dead chickens tested positive for the H5N1 virus, and the Provincial Department of Animal Health culled the infected chickens and quarantined and disinfected the area. The department warned households with poultry to report any disease immediately to local veterinary agencies to prevent the spread of bird flu. +

+

+ + H5N1 in Humans +
+ China +
+ . On December 31, a 39-year-old male bus driver died a week after being admitted to a hospital with a fever. The Shenzhen Disease Control Center confirmed that he died from the H5N1 bird flu strain that is intransmissible from human to human. The man was reported to have had no contact with poultry and had not travelled out of his home city of Shenzhen before becoming ill. The Chinese Health Ministry said that he had taken 5 days of leave prior to becoming sick and had gone jogging every morning in an area with many migratory birds. The claim that the man contracted the disease from wild birds was dismissed by Lo Wing-lok, a Hong Kong legislator, “This is a poultry virus, not a wild bird virus. Blaming human infection on wild birds is not conducive to epidemic control because people might become complacent about poultry, about slaughtering sick birds. As a result, more human cases could occur,” Lok said. +

+

+ + Egypt + + . In the Daqahliyah Governorate of Egypt, a 29-year-old man developed bird flu symptoms on December 8 and was admitted to a hospital on December 15 where he was treated with oseltamivir. The man remained in critical condition and died on December 19. After investigation, it was found the man had exposure to backyard poultry before he developed symptoms of infection. Out of 156 cases of humans infected with highly pathogenic avian influenza in Egypt, 54 have proved fatal. +

+

+ + Zimbabwe + + . A senator for the Movement for Democratic Change party in Zimbabwe was reported to have died last week from bird flu by a family spokesperson. Gladys Gombami-Dube, 48, died at a hospital in Kadoma where she was admitted after experiencing disorientation and dizziness. This is disputed by the Health and Child Welfare Minister, Henry Madzorera, who states that the government has not raised any alerts of avian influenza outbreaks as there have been no reports of a possible epidemic or cases of bird flu in the country. The family of the senator insists than post-mortem results indicated she had been infected with avian influenza. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_02_02.html b/data/flu-report-html/usgs_avian_flu_report_2012_02_02.html new file mode 100644 index 0000000..979d44d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_02_02.html @@ -0,0 +1,2151 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Feb 02, 2012 +

+
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+

+ News Update, February 6 +

+
+

+ + H5N1 in Wild birds +
+ Pakistan +
+
+ . A report filed on January 10, confirmed the death of 15 peacocks over the previous week at Safari Park (also known as Woodland Wildlife Park) in the province of Punjab was due to the H5N1 bird flu virus. Park Director Yousuf Paul said the disease is believed to have come from the hens and chickens of some nearby poultry farms. In regards to other birds caged with the dead peacocks, Jinnah Hospital Chief Executive and Principal of the Allama Iqbal Medical College Dr. Javed Akram advised administrators to kill those infected and dispose of them away from the zoo area. He also suggested protective masks for workers. The virus was previously found in domestic poultry in the province when 18 birds died and the remainder destroyed. A Food, Agriculture and Livestock Ministry spokesman said the virus had also been detected in a flock of peacocks in Khyber Pakhtunkhwa. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . There was a confirmed outbreak of highly pathogenic avian influenza, H5N1, on January 8, in the Dhaka District. The disease was found in domestic chickens, but the cause is still unknown. There were 2,418 birds that died, while the remaining 34,396 birds on site were destroyed to prevent further spread on the virus. +

+

+ + Bhutan + + . Backyard poultry farms in the Chukha and Thimphu Districts experienced outbreaks of highly pathogenic avian influenza on December 30 and January 13, respectively. Out of 2,280 susceptible birds on the farms, 141 birds died from the disease and an additional 1,813 were destroyed. The remaining 467 birds will be culled to prevent the spread of the virus. The birds tested positive for the H5N1 virus at the High Security Animal Disease Laboratory (HSADL) in Bhopal, India, and the National Centre for Animal Health, Serbithang, Thimphu. The source of the outbreaks remains unknown but they appear to be epidemiologically linked. Control measures already applied include stamping out, quarantine, movement control inside the country, screening, disinfection of infected premises/establishment(s), and dipping/spraying.Vaccination is prohibited and there will be no treatment of affected animals. +

+

+ + India + + . A rural backyard poultry farm in the Khordha district of Odisha lost three birds to the highly pathogenic avian influenza virus, H5N1, on January 3. Of the 35,389 susceptible birds, an additional 31,912 were destroyed. The disease was confirmed at the High Security Animal Disease Laboratory in Bhopal, but the cause remains unknown. Stamping out of all domestic poultry is being applied in an approximately 3-km radius zone around the outbreak. An intensive surveillance campaign has been launched in a 10-km radius zone including: closure of poultry markets and prohibition on the sale and transportation of poultry products in the infected zone, and disinfection of premises after culling and sealing of premises where appropriate. Restocking will be applied in accordance with a specified protocol. +

+

+ + Egypt + + . There were four reported outbreaks (one in the Gharbia Governorate and three in the Menoufia Governorate) of highly pathogenic avian influenza in chickens and ducks between January 3 and 9. To prevent the spread of the virus, 67 chickens and 20 ducks were destroyed. The cause of the outbreak is unknown. The birds tested positive for H5 at the National Laboratory for Veterinary Quality Control on Poultry Production (NLQP). +

+

+ + Taiwan + + . The first case of low pathogenic avian influenza, H5N2, for 2012 was reported on January 6, for an outbreak that began on November 25, at a poultry farm in Chang-Hua. Of the 63,000 susceptible birds on the farm, 200 died. The virus was confirmed by the Animal Health Research Institute. The farm has been placed under quarantine and restricted from moving its chickens. Eggs from the farm are still allowed to be transported after pasteurization. The Bureau of Animal and Plant Health Inspection and Quarantine (BAPHIQ) reported that no suspected cases or abnormal mortality were detected in the 115 surrounding poultry farms and egg production has remained normal. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health and Population reported that a 42 year-old man from the Menofia Governorate was infected with the H5N1 virus. His symptoms began on December 16. He was admitted to the hospital five days later and received oseltamivir treatment. The man died on December 22. This was the 55th fatality of the 157 cases of human bird flu infection in Egypt. The Central Public Health Laboratories confirmed the case on December 24. The source of infection is linked to the man’s exposure to sick and dead poultry at a backyard farm. +

+

+ + Indonesia + + . In North Jakarta, a 24-year-old man died on January 7, due to infection of the H5N1 avian influenza virus. This was the country’s third fatal case in as many months. The man’s symptoms began on December 31. He was twice misdiagnosed with gastric infection and dengue fever. On January 6, he was rejected by the Sulianto Suroso infection diseases hospital because the intensive care unit was full. The virus was confirmed by the health ministry’s research agency and is believed to have come from a sick pigeon around the man’s house. Additionally, it was confirmed that the death of a 21 year-old man in West Jakarta in September 2007, was due to the H5N1 virus. +

+

+ News Update, January 19 +

+
+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . A little egret found dead on Jan. 12 in Yuen Long, New Territory, Hong Kong, tested positive for H5N1 bird flu. The Fisheries and Conservation Department stated that precautions and tests of local poultry farms will continue in an effort to prevent the spread of the disease. +

+

+ + India + + . The National Institute of Virology (NIV) has identified the strain of bird flu that killed more than 500 crows 3 months ago in Jharkhand. Previously in India in 2006, the H5N1 strain belonged to Clade 2.2. The new strain identified this month, belongs to Clade 2.3.2.1. Characterization of the new strain is underway. The director of NIV, Dr. A.C. Mishra, states that it remains unknown whether the new strain caused the outbreak of bird flu in Orissa. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . From December 24 to January 10 in the divisions of Dhaka and Khulna of Bangladesh, 3 separate farms experienced outbreaks of bird flu. The Bangladesh Livestock Research Institute, Central Disease Investigation laboratory and Field Disease Investigation Laboratory confirmed birds from the farms were infected with the H5N1 virus. Out of a total of 43,849 birds, 3,676 were reported dead while an additional 40,173 were culled to prevent the spread of the virus. The source of the outbreaks remains unknown, and control measures include disinfection of the affected premises and movement control of poultry in the country. +

+

+ + Bhutan + + . Last week in Thimphu, Bhutan, 49 chickens from 5 households were culled and buried after the National Centre for Animal Health confirmed they were infected with H5N1 bird flu. The birds began dying January 8 and officials were notified by residents a few days later, after they had already buried 9 dead birds. The source of the outbreak is thought to be wild birds or the spread of a similar outbreak of bird flu in Tshimasham. Officials sprayed disinfectant around the infected areas, and the lifted ban of imported poultry from India was re-imposed after a recent outbreak of bird flu in Orissa, India. +

+

+ + India + + . In the Mayurbhanj district of India, preliminary tests confirmed the presence of bird flu in a poultry sample. Veterinary Services is awaiting a final report before being dispatched to the area. Earlier, the Khurda district experienced an outbreak of H5N1 bird flu and is currently in the process of culling chickens and ducks. So far, 31,175 birds have been culled and 16,551 eggs have been destroyed. Officials estimate that over 35,000 chickens and ducks will be culled before the outbreak of bird flu is over. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . A 2-year-old boy from the Banteay Meanchey province died January 18 due to the H5N1 bird flu virus. On January 3, the boy fell ill, and on January 9, he was admitted to Siem Reap hospital for treatment. He is thought to have contracted the disease after coming into contact with sick poultry in his village. Kao Sopheaktra, director of the provincial health department, stated residents in the same commune as the infected boy ate chickens that had died from unknown causes and encouraged the residents to seek immediate medical treatment if they became ill. Officials will be monitoring the health of the boy’s relatives and other villagers for the next 2 weeks and will be testing poultry in the area for highly pathogenic avian influenza. +

+

+ + China + + . On January 22, a 39-year-old man from Guiyang, Guizhou, has died of H5N1 bird flu virus. The man developed symptoms on January 6th. It is unclear how he contracted the virus, but none of the 71 immediate contacts have unusual symptoms. +

+

+ + Vietnam + + . On January 16, an 18-year-old man from the Kien Giang province in Vietnam died after contracting bird flu. The man was hospitalized only a day earlier with symptoms of a high fever and respiratory problems. No sick or dead poultry have been reported on the two farms where the man worked or among neighboring flocks. Samples have been collected for analysis, and the farms have been disinfected. However, many of the ducks from one of the farms had already been sold before samples were collected. The man’s house has been disinfected and local residents remain under surveillance for symptoms of bird flu. This is the first avian influenza related death in Vietnam since April 2010. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_02_22.html b/data/flu-report-html/usgs_avian_flu_report_2012_02_22.html new file mode 100644 index 0000000..3b09b2e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_02_22.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Feb 22, 2012 +

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+ News Update, February 22 +

+
+

+ Scientists from the Animal, Plant and Fisheries Quarantine and Inspection Agency in South Korea published a study on the phylogenetic analysis of the 2010-2011 highly pathogenic avian influenza outbreaks in that country. On December 7, 2010, the H5N1 virus was isolated from a healthy mallard in South Korea. This was the first HPAI H5N1 detection in over two years. After that, the virus was frequently detected in wild birds and poultry until May 2011. There was a total of 14 bird species that tested positive for the virus including mallard, Baikal teal, mandarin duck, whooper swan, and Eurasian eagle owl. The viruses in the study were isolated by inoculating embryonated chicken eggs with specimens from cloacal swab specimens, feces, and homogenized organs from birds with suspected infections. Scientists selected 27 viruses, based on the outbreak period, the region, and the host species, and conducted sequencing and phylogenetic analysis of 8 gene segments. All 27 viruses were clustered into clade 2.3.2 of highly pathogenic avian influenza viruses. These were different from the viruses responsible for previous outbreaks in South Korea, but were closely related to the subtype H5N1 isolates found in Mongolia, China, and Russia in 2009–2010. In the 2010–2011 outbreaks in South Korea, the cases suggest that the H5N1 virus was introduced by migratory birds but spread from farm to farm by humans and associated agricultural practices. The study concludes that early detection of virus outbreaks and a rapid response to them are essential in controlling the introduction of virus from migratory birds to poultry and in preventing farm-to-farm spread. +

+

+ + H5N1 in Wild birds +
+ India +
+
+ . The Department of Animal Husbandry, Dairying and Fisheries in New Delhi confirmed outbreaks of highly pathogenic avian influenza virus among crows (Corvus macrorhynchus) in four different states. The incident in Jharkhand, which concluded on December 13, 2011, accounted for the death of 1,143 birds. During January, both the state of Maharashtra and Orissa reported the deaths of five crows each. The outbreak in Bihar ended on February 3, and was responsible for the deaths of six crows. The cause of death from H5N1 was confirmed at the High Security Animal Disease Laboratory in Bhopal. The infected premises were disinfected, but no other control measures were applied. The event is reported as resolved. +

+

+ + Hong Kong + + . There have been four outbreaks of H5N1 bird flu in Hong Kong in wild birds between January 30 and February 8. The birds affected include 2 little egrets (Egretta garzetta), 1 oriental magpie robin (Copsychus saularis), and 1 grey heron (Ardea cinerea). These four dead birds and a goose carcass from an unknown source were detected during an ongoing surveillance program for wild birds. An intensive surveillance system is in place for all poultry farms, poultry markets and pet bird shops in Hong Kong. The cause of the outbreaks is unknown, but a total of 19,451 poultry, including 15,569 chickens, 810 pigeons, 1,950 pheasants and 1,122 silky fowls were culled in the Cheung Sha Wan Temporary Wholesale Poultry Market on December 21 as a precautionary measure. +

+

+ + H5N1 in Poultry +
+ India +
+ . Bird flu (H5N1) has resurfaced in Orissa province. On February 3, the Bhopal-based High Security Animal Diseases Laboratory (HSADL) confirmed bird flu among the poultry population (28,851 birds) of Central Poultry Development Organisation (CPDO). The state government has restricted the movement of poultry within a 3-km radius of the CDPO. After the test results were announced, the Bhubaneswar Municipal Corporation (BMC) called an emergency meeting and ordered the closing of poultry and poultry product shops in 21 wards within the alert zone. The BMC has sent around 10 rapid response teams for surveillance. These teams will work to sanitize any infected areas in the wards. +

+

+ + Nepal + + . Bird flu has broken out recently in Sunsari, Ilam, and Panchthar districts. According to the Livestock Service Office, samples sent to a London-based laboratory tested positive for H5N1 bird flu and the results were confirmed on February 5. Poultry farmers in the area had suspected bird flu several weeks earlier, but test results have not been released until now. As a result more than 3,000 chickens have died in Sunsari district. The government has urged everyone to maintain high alert in the areas within 3-km of the bird flu affected areas. A meeting of bird flu disease control technicians decided to cull birds, fix four border points around the infected areas, and request locals and all other stakeholders to close shops, schools and markets in the emergency-declared area. +

+

+ Bird flu (H5N1) was also confirmed in chickens on three farms in Jhapa district. The Central Animal Disease Research Laboratory in Kathmandu confirmed the presence of H5N1 bird flu after it tested samples from the dead birds. The District Bird flu Control Technical Committee declared those areas as 'crisis zone' on February 12. The corners of the zone will be identified and culling of birds within the area will begin soon. +

+

+ + Vietnam + + . Two villages in Quang Tri and one in Thanh Hoa have had outbreaks of bird flu start between January 19 and January 27. A total of 1,593 cases occurred among a susceptible population of 3,632 birds. There were 200 deaths and the remaining 3,432 birds were culled to prevent the spread of the disease. A village in Hai Duong province has been experiencing an outbreak of H5N1 bird flu since January 28. In total, 1,000 birds in a population of 2,637 died and the rest were culled to prevent the virus from spreading. Outbreaks of H5N1 bird flu began on February 8 and 10 in two villages in Hai Phong province. Out of 2,100 susceptible birds, 800 were infected, 625 died, and the surviving 1,475 were culled as a preventative measure. The source of the outbreaks in Quang Tri, Thanh Hoa, Hai Duong and Hai Phong is unknown, but control measures such as quarantine, movement control, and disinfection of infected premises have been undertaken. There are also plans to enact screening, zoning, and vaccination. Tests for Quang Tri and Thanh Hoa were conducted by Regional Animal Health Office No. 3 on January 25 and for Hai Duong on February 8. +

+

+ The People’s Committee of northern Ha Nam province announced the first outbreak of bird flu in Kim Bang district and reported high risk of the disease in many other areas. Poultry raised by two local households in the same village died on February 7. Two thousand birds died among a population of 3,400 birds; the remaining 1,400 birds were culled as a preventative measure. Tests on samples from the dead poultry confirmed that they were positive for H5N1 bird flu, according to the provincial animal health department. The Ministry of Agriculture and Rural Development's Department of Animal Health sterilized the affected areas, set up five quarantine stations in the commune, and culled all poultry raised by the affected households. However, a Vietnam News Agency correspondent reported that some local residents threw dead poultry into canals and left duck carcasses decomposing in the open air. Officials in southern Bac Lieu and Tra Vinh provinces also reported that their areas faced high risk of a bird flu outbreak since many birds have died with no clear cause in the past month and, in Tra Vinh province, 6 of 12 samples from the poultry markets tested positive for the disease, though the province has not yet declared the outbreak. Ha Nam province will be vaccinating all domestic fowl free-of-charge from now until the end of the year. The source of the outbreak is unknown, but control measures such as quarantine, movement control, and disinfection of infected premises have been undertaken. Plans are underway to enact screening, zoning, and vaccination. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 37-year-old man died in isolation at Hasan Sadikin Hospital in West Java on February 9. It is suspected that he had bird flu because he experienced pain in his lungs, other organs, and respiratory system. The spokesman for avian flu control with the hospital, Primal Sudjana, said that the patient suffered respiratory failure on February 7 and the team decided to apply life support. The patient was given Tamiflu and put on a ventilator. According to his family, besides the patient, his wife, and his two children had all been ill, but he had the worst symptoms. Though he had not been in direct contact with birds, his wife reported that their neighbors keep ducks. Samples have been sent to the Health Ministry’s lab in Jakarta to determine the cause of death. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_02_29.html b/data/flu-report-html/usgs_avian_flu_report_2012_02_29.html new file mode 100644 index 0000000..fb5c6be --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_02_29.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Feb 29, 2012 +

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+ News Update, February 28 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . An Oriental Magpie Robin (Copsychus saularis) found dead on February 7 at Yuen Long tested positive for H5N1 bird flu. The cause of infection is unknown but precautionary measures are being taken such as quarantine, movement control of poultry, screening, zoning, disinfection of the area, and dipping. Tests were performed by Tai Lung Veterinary Laboratory and the Centre of Influenza Research. The cause of the outbreak is unknown. +

+

+ + Nepal + + . After the Department of Livestock Services, a part of the Ministry of Agriculture and Cooperatives, had denied that crows at Rastriya Shava Grihya died due to bird flu, the Ministry of Agriculture and Cooperatives confirmed on February 16 that bird flu was the cause of death for crows in Kathmandu valley. The Parliamentary Committee on Natural Resources and Means directed the ministry to take necessary steps to control bird flu as soon as it is recorded in the community, increase the budget to control the spread of bird flu, establish a mobile team for monitoring and surveillance at the affected areas, be extra vigilant in border areas, and improve its quarantine services. The committee asked the ministry to explain why it had not reported the disease to the public as soon as it was confirmed and why they had begun to take action to control the disease without declaring an outbreak. There were also complaints that the ministry had not kept up surveillance in a previous crisis zone for the required 90 days and that farmers had not been properly compensated for poultry that were culled. +

+

+ + H5N1 in Poultry +
+ Nepal +
+ . A day after a team of experts and technicians claimed that H5N1 bird flu had been brought under control in Sunsari, Ilam, Panchthar and Jhapa districts, the disease re-surfaced in Sunsari. Regional Livestock Health Directorate acting chief Dr Bolaraj Acharya said samples of dead chickens sent a week ago to Central Laboratory from a die-off in Sunsari tested positive for bird flu on February 15. +

+

+ Bird flu broke out on a farm in Koshi district on January 31 and in two villages and one farm in Mechi district on February 6. A total of 6,094 birds died from the disease out of a susceptible population of 12,214. The remaining 6,120 birds were culled to prevent the spread of the disease. Stamping out followed by cleaning, disinfection, disposal and sealing of the infected premises has already been completed. Post-operative surveillance activities are being intensively carried out throughout the country. The cause of the outbreaks is unknown, but all outbreaks were resolved on February 13 and 14. +

+

+ + Vietnam + + . Outbreaks of H5N1 bird flu began in one village in Ha Tinh province on February 11 and in another village on February 14. Out of 2,000 susceptible birds in the villages, there were 1,230 cases of bird flu and 800 deaths. The remaining 1,200 birds were culled to prevent the disease from spreading. Two villages in Bac Ninh province have also recently experienced outbreaks of H5N1 bird flu; one began on February 12 and the other on February 17. The villages housed a total of 492 susceptible birds, of which 290 fell ill and 150 died. Officials culled the remaining 342 birds to prevent the spread of the disease. The cause of the outbreaks in both provinces is unknown, but control measures including quarantine, movement control, disinfection of infected premises, and modified stamping out have already been applied. There are plans to carry out screening, zoning, and vaccination in response to the outbreaks. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health and Population of Egypt reported that a 45-year-old woman from Menofia governorate is recovering from a case of H5N1 bird flu. The patient developed symptoms on February 10 and received oseltamivir treatment on February 17. The Central Public Health Laboratories confirmed the presence of the virus through laboratory testing on February 18. Epidemiological investigation into the source of infection indicate that the woman had exposure to backyard poultry. Of the 160 cases confirmed to date in Egypt, 55 have been fatal. +

+

+ + Indonesia + + . Bird flu (H5N1) was confirmed as the cause of death for a 19-year-old woman who died on February 13. She had been admitted to a hospital in Tangerang district on the outskirts of the capital Jakarta the day before after having a fever for four days. A health ministry team that conducted surveillance of her house and neighborhood was unable to find out how the woman had contracted the disease. This is the third death from bird flu in Jakarta this year and there have been 150 deaths from the virus reported in Indonesia since 2003. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_03_06.html b/data/flu-report-html/usgs_avian_flu_report_2012_03_06.html new file mode 100644 index 0000000..15ab07d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_03_06.html @@ -0,0 +1,2100 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Mar 06, 2012 +

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+ News Update, March 6 +

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+

+ A study published on February 27 in the journal Proceedings of the National Academy of Sciences documents a new influenza A virus found in Guatemalan fruit bats. The bat flu virus is a distant evolutionary cousin to other flu viruses and scientists do not think that the virus is currently transmissible to humans, but the Centers for Disease Control and Prevention suggest that the disease should be studied as a potential source for human influenza. Prior to this study, there has been only one other report of the identification of influenza virus from bats. In 1983, Lvov and coworkers reported on the isolation of H3N2 from bats in Kazakhstan. +

+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . It was reported on February 29 that a dead oriental magpie robin, the second found in Cheung Chau within two days, tested positive for H5N1 bird flu in preliminary checks. They had announced on February 28 that a crested goshawk found dead in Mong Kok tested positive for H51 bird flu. The department has stepped up disinfection and cleaning in these areas. +

+

+ + H5N1 in Poultry +
+ Bhutan +
+ . An outbreak of H5N1 bird flu on a backyard poultry farm in Chukha district began on January 8 and was reported to OIE on March 1. The farm housed 123 animals, of which 37 became ill and 35 died. The remaining 88 birds were culled to prevent the spread of the disease. Samples from the birds tested positive for H5N1 at the National Centre for Animal Health on January 10. The source of the outbreak is unknown, but control measures such as stamping out, movement control, screening, disinfection of the premises, and dipping/spraying have been put in effect. +

+

+ + Myanmar + + . A farm in Sagaing region is experiencing an outbreak of H5N1 bird flu that was confirmed by the Regional Veterinary Diagnostic Laboratory in Mandalay on February 24 and by the Central Veterinary Diagnostic Laboratory in Yangon on February 26. The farm contained a total of 1,060 layer chickens in two establishments. A few chickens were found dead on February 20 and a total of 61 chickens became sick and died within four days. The remaining 999 birds were culled as a precautionary measure. Officials have applied other control measures including quarantine, movement control, zoning, disinfection of the premises, and dipping/spraying. The cause of the outbreak is currently unknown. +

+

+ + Vietnam + + . On February 21, an outbreak of H5N1 bird flu began on a village in Quang Ninh province. The village housed 430 birds and nearly half of them died from the disease. The remaining birds were culled to stop the spread of the disease. Tests on samples from the chickens were conducted by RAHO 2 on February 24. In Nam Dinh province, a village housing 180 birds is experiencing an outbreak of H5N1 bird flu that began on February 20. They lost 100 birds to the disease and the remaining 80 were culled as a precaution. The source of these outbreaks is unknown. Control measures such as movement control, disinfection of the area, and modified stamping out have been enacted in both provinces and there are plans to screen, zone, and vaccinate animals in response to the outbreak. +

+

+ + South Africa (H5N2) + + . Commercial farms that raise ostriches in Western Cape Province reported an outbreak of low pathogenic H5N2 on February 23. The outbreak began on January 13 and affected 662 of the 2,963 birds on the farm. The source of the outbreak is unknown, but there are plans to cull the remaining ostriches to prevent the disease from spreading. There are also plans to quarantine and screen birds in the area. The tests that confirmed the disease were conducted by Deltamune on February 21. +

+

+ + H5N1 in Humans +
+ Bangladesh +
+ . A 40-year-old man was diagnosed with H5N1 bird flu through the live bird market surveillance program in Dhaka City on February 26. The man works in the market and had a cough. Nasal and throat swabs were collected and tested positive for H5N1 bird flu. The man is otherwise free of symptoms. IEDCR (Institute of Epidemiology, Disease Control & Research) and ICDDR,B (International Centre for Diarrhoeal Disease Research, Bangladesh) are jointly investigating the case and monitoring the situation. This is the 4th case of human H5N1 bird flu in Bangladesh since the disease was first reported there in 2008. +

+

+ + Egypt + + . The Ministry of Health and Population of Egypt recently notified WHO of two new cases of human infection with avian influenza A (H5N1) virus. The first case is a 32-year-old male from Behira governorate. He developed symptoms on February 16 and was admitted to hospital on February 21 where he received oseltamivir treatment upon admission. He died on February 28. The second case was a 37-year-old female from Kafr el sheikh governorate who developed symptoms on February 18. She was admitted to hospital on February 23, received oseltamivir treatment upon admission, and died on February 26. Preliminary investigations into both cases with regard to the source of infection indicate close contact with sick or deceased backyard poultry. Both cases were confirmed by the Central Public Health Laboratories. Of the 163 cases confirmed to date in Egypt, 57 have been fatal. +

+

+ + Indonesia + + . A 12-year-old boy from South Bali died of H5N1 bird flu on February 21. The child developed symptoms on February 11, was admitted to a private clinic on February 16, and was transferred to the Bird Flu Unit at Sanglah Hospital only 5 hours prior to death. Dr. Ken Wirasandshi, the head of the Bird Flu Team at Sanglah Hospital, said that the patient was suffering from respiratory distress and laboratory tests confirmed bird flu virus. Epidemiological investigation into the source of infection indicated contact with poultry, though no poultry deaths within the household or neighborhood have been reported. The child’s parents, however, deny any contact with poultry prior to the onset of the disease. +

+

+ + Vietnam + + . Binh Duong province has confirmed its first case of H5N1 bird flu in a human. The patient, a 22-year-old man, was brought to a local hospital with high fever and breathing trouble on February 17. He was transferred to Ho Chi Minh City Hospital for Infectious Diseases and Tropical Diseases on February 23 as his condition became worse. Blood samples confirmed H5N1 bird flu as the cause of illness. It is thought that the man caught the disease by eating a meal that contained duck blood. Those who had been in contact with him have been quarantined and his house has been disinfected with chemicals. The Animal Health Department raided shops in his hometown that were illegally trading in live poultry and slaughtering birds. They have also prepared 1.2 million doses of vaccine and plan to vaccinate birds against the virus. This is the fourth case of H5N1 bird flu in a human in Vietnam this year. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_03_12.html b/data/flu-report-html/usgs_avian_flu_report_2012_03_12.html new file mode 100644 index 0000000..e34d312 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_03_12.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ News Update, March 12 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . A black-headed gull (Chroicocephalus ridibundus) was found dead on March 2 at Tuen Mun and a peregrine falcon (Falco peregrinus calidus) was found dead on March 3 at Ma On Shan. Samples from the birds were tested at the Tai Lung Veterinary Laboratory and the Centre of Influenza Research. They were positive for H5N1 bird flu. An intensive surveillance system is already in place for all poultry farms, poultry markets, and pet bird shops in Hong Kong and surveillance and monitoring of local chicken farms has been stepped up. The source of the outbreak in wild birds is unknown and so far samples from poultry farms in Hong Kong have tested negative for H5 bird flu. Preventative measures such as stamping out, quarantine, movement control, screening, zoning, disinfection of premises, and dipping/spraying have been undertaken. +

+

+ + H5N1 in Poultry +
+ Israel +
+ . Two villages in Hadarom district began experiencing an outbreak of H5N1 bird flu on March 7. The villages housed a total of 51,000 turkeys, of which 19,500 fell ill and 10,500 died. Tests were conducted by the Avian Diseases Division of the Kimron Veterinary Institute. The source of the outbreak is unknown, but precautionary measures such as quarantine, movement control, and zoning have been carried out. There are also plans to cull the remaining birds, screen, and disinfect the premises. +

+

+ + Vietnam + + . Nearly 2,600 ducks were culled in Phu Xuyen district on February 17. The Central Animal Health Diagnosis Center confirmed five days later that the birds were positive for H5N1 bird flu. The information was released to the public on March 1. +

+

+ + Taiwan (H5N2 is now HPAI) + + . On February 2, an outbreak of highly pathogenic H5N2 bird flu began on a farm in T’ai-Nan municipality. There were 4,840 broiler breeder chickens on the farm and 804 died from the disease. The remaining 4,306 birds were culled to prevent the spread of the disease. Clinical and epidemiological investigations have been implemented but the origin of the outbreak remains unknown. The mortality rate was about 16.6% and tests run by the Animal Health Research Institute confirmed that the birds were infected with a highly pathogenic strain of H5N2 bird flu. Control measures are underway including, quarantine, movement control, screening, zoning, and disinfection of the premises. +

+

+ A farm in Changhua County is suspected of having an outbreak of bird flu after more than 120 hens died on March 5. Inspectors collected tissue samples to see if the birds were infected with the highly pathogenic H5N2 strain that was first detected on another farm in Changhua County in December of 2011. Officials are controlling the movement of all live fowl and fresh eggs from infected farms. The Health Bureau of Taichung has decided to vaccinate poultry against H5N1 bird flu. In Taipei, officials have ordered quarantine measures at poultry markets to prevent the H5N2 virus from spreading. They are also conducting checks on pet stores, breeding farms, and parks; so far, 4,000 samples have been tested and none showed signs of bird flu. +

+

+ Controversy has erupted over whether the H5N2 outbreak detected earlier in the year had indications of high pathogenicity, but the results were not reported to the OIE because of political pressure. A number of investigations and reviews have been launched to investigate this matter. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . A 42-year-old man died on March 3 at Hasan Sadikin Hospital after possible exposure to H5N1 bird flu. He had been admitted to the hospital on March 1 with flu-like symptoms and was placed in isolation. He was the second patient at the hospital to die from H5N1 within a month. +

+

+ A 24-year-old woman from Sumatra Island died on March 1 in Bengkulu city. Tests conducted by the Health Ministry’s laboratory were positive for H5N1 bird flu. Her death is the 5th human death from bird flu in Indonesia this year. The patient lived in an area where there were many ducks and chickens, including some that lived in her house. +

+

+ + Vietnam + + . The 4th case of H5N1 bird flu infection in a human in Vietnam was reported on March 7 by Dr. Tran Ngoc Huu, President of the Pasteur Institute in Ho Chi Minh City (HCMC). Doctors from the General Hospital in Dan Lak province transferred a 32-year-old man to the Tropical Disease Hospital in HCMC for suspected bird flu. The Tropical Disease Hospital put the man on a respirator for severe pneumonia and the Pasteur Institute conducted tests that turned out to be positive for H5N1 bird flu. It is not known how the man contracted the disease. +
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_03_23.html b/data/flu-report-html/usgs_avian_flu_report_2012_03_23.html new file mode 100644 index 0000000..0a20bfa --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_03_23.html @@ -0,0 +1,2098 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Mar 23, 2012 +

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+ News Update, March 22 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . According to the Agriculture, Fisheries and Conservation Department, a dead crow found in Shek Kip Mei tested positive for the H5 avian influenza virus on March 17. The bird was found near the Tai Hang Tung recreation ground on March 15. Control measures of cleansing and disinfecting have been employed. No poultry farms are located within three kilometers of the site; but farmers and pet owners in the area have been reminded of proper precautions to take in preventing the spread of the virus. +

+

+ + H5N1 in Poultry +
+ India +
+ . A district animal husbandry officer in the Siwan district in the state of Bihar reported on March 15, that more than 1,500 chickens died due to a bacterial infection and not bird flu during the past 15 days. The infection is tied to unhygienic living conditions. An initial post-mortem examination found no symptoms of bird flu. Serum from the chickens will be sent to Patna and Kolkata for further investigation. +

+

+ + Nepal + + . A poultry farm in Kathmandu reported the death of roughly 15,160 chickens on March 13. The Animal Health Directorate confirmed the cause of the die-offs, which began on March 2, was H5N1. The chickens and feed originated from the Narayangadh-based Abinash hatchery. Control measures have included culling, disinfecting, and dumping the feed. +

+

+ + Netherlands + + . A poultry farm in Limburg province culled 42,700 turkeys after on outbreak with 200 cases of low pathogenic avian influenza (LPAI) H5N2 was confirmed on March 17. All birds were destroyed on March 19. The source of the outbreak is unknown. Control measures already applied include stamping out, movement control inside the country, screening, zoning, and disinfection of infected premises. The LPAI test results came from the Central Veterinary Institute, a national laboratory in Lelystad. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health and Population reported a case of human infection with avian influenza, H5N1, in the Daqahlia governorate on March 19. A 40 year-old female first exhibited symptoms on March 6, and was hospitalized six days later. She received oseltamivir immediately, but died on March 15. The source is believed to be exposure to sick backyard poultry. The case was confirmed by the Central Public Health Laboratories (NIC). +

+

+ News Update, March 15 +

+
+

+ + Israel + + . After the outbreak of H5N1 bird flu in turkeys that was diagnosed on March 8, cats were seen eating the carcasses of dead birds before they were removed and the remaining birds were culled. On March 14, 4 cats were found dead and 4 others showed clinical signs of bird flu such as respiratory trouble and weakness. The next day authorities caught 16 cats in the area and euthanized them. Around 50 cats live in the village where the outbreak occurred. Bird flu was confirmed as the cause of illness through laboratory tests conducted by the Kimron Veterinary Institute. Precautions such as movement control, screening, zoning, and disinfection of the premises have been undertaken. +

+

+ + H5N1 in Poultry +
+ India +
+
+ . On March 10, official sources confirmed a recent outbreak of H5N1 bird flu at a government-run poultry farm in Tripura. “We have decided to begin culling after confirmation of the presence of H5N1 virus in the affected birds by High Security Animal Disease Laboratory (HSADL) in Bhopal last night”, Director of the Animal Resource Development Department, Monaranjan Sarkar said. In the weeks prior to testing, the number of chicks on the farm had dropped from 3,871 to 30. Sarkar added that all necessary precautionary measures have been taken to contain the outbreak and that rapid response teams have been asked to start culling birds on the farm. +

+

+ + Nepal + + . The government announced on March 12 that four villages in Sunsari and Jhapa districts are experiencing H5N1 bird flu outbreaks. A cabinet meeting that day decided to send immediate relief to the four villages and take measures to prevent the disease from spreading. Outbreaks in three of these villages (2 in Jhapa and 1 in Sunsari) have been reported to OIE. A total of 326 birds out of 468 housed in these villages died from the virus and the remaining 142 were culled. Tests were conducted by the Central Veterinary Laboratory and results were positive for H5N1 bird flu, but the source of the outbreaks is unknown. The infected areas have already been cleaned, disinfected, and sealed. The carcasses of the birds have been destroyed. Post-operative surveillance activities are being intensively carried out throughout the country. Other control measures undertaken include quarantine, movement control, screening and dipping/spraying. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_04_09.html b/data/flu-report-html/usgs_avian_flu_report_2012_04_09.html new file mode 100644 index 0000000..bfcdc27 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_04_09.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ News Update, April 5 +

+
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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . A peregrine falcon (Falco peregrinus calidus) found dead on March 12 and a house crow (Corvus splendens) found dead on March 15 both tested positive for H5N1 bird flu. An intensive surveillance system is in place for all poultry farms, poultry markets and pet bird shops in Hong Kong. The H5N1 infected wild birds were detected as part of an ongoing surveillance program.Tests were conducted by Tai Lung Veterinary Laboratory and the Centre of Influenza Research in Hong Kong. +

+

+ + H5N1 in Poultry +
+ Nepal +
+ . After H5N1 bird flu was detected in Lalitpur on March 21, 2,954 chickens have been culled, and 1,500 eggs have been destroyed. By the time culling began 6,646 chickens have died. The District Livestock Service faced problems with disinfection because the owner wanted compensation for the destruction of the chicken manure. However, after a meeting with the District Livestock Service, the Department of Animal Health Services, representatives of police administration, and poultry entrepreneurs, it was agreed that the chicken manure should be destroyed. Cleaning, disinfection, disposal and sealing of the infected premises have already been completed. +

+

+ On March 16, a commercial layer farm in Kathmandu district experienced an outbreak of H5N1 in ducks and quails. Of 15,220 birds on the farm, 15,160 died from the disease and the remaining 60 were destroyed. Cleaning and disinfection of the infected premises is in progress. A farm in Arghakhanchi district also experienced a die-off of 150 birds in late March and bird flu is suspected. A sample has been sent to Kathmandu for laboratory testing. Tests for the Lalitpur outbreak and the Kathmandu outbreak were conducted by the Central Veterinary Laboratory. Post-operative surveillance activities are being intensively carried out throughout the country. +

+

+ + Taiwan (LPAI) + + . The Defu market in New Taipei City was closed on March 23 after a sample collected from a chicken there tested positive for H5N2 bird flu. The Council of Agriculture is working to trace the origin of the chicken. The city government disinfected the market and neighboring areas within a 3-kilometer radius. Yilan County also reported a case of H5N2 from a duck market, but officials have not yet determined whether it was a highly pathogenic strain. More than 300 ducks at that market were culled and the ducks were traced back to a farm in Changhua that had gotten them from a farm in Yunlin County. The farm in Yunlin was empty, but officials disinfected it and the neighboring areas. They are inspecting other duck farms in Yunlin for signs of a bird flu outbreak. +
+
+ + H5N1 in Humans +
+ Indonesia +
+ . A 17-year-old boy in West Lombok died from H5N1 bird flu on March 9. He was a construction worker and began experiencing symptoms of fever on February 28 but did not seek treatment until March 1. His health worsened and he was admitted to the Mataram hospital where he died. Laboratory tests were positive for bird flu. A ministry investigation found that the boy had been exposed to a dead chicken shortly before getting sick. His death is the sixth human death from bird flu in Indonesia this year. Worldwide this year, there have been 18 cases of human infection with bird flu in six different countries reported to the WHO. Of these cases, 10 were fatalities. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_04_12.html b/data/flu-report-html/usgs_avian_flu_report_2012_04_12.html new file mode 100644 index 0000000..ea00bdd --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_04_12.html @@ -0,0 +1,2080 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ News Update, April 10 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . An oriental magpie robin (Copsychus saularis) found dead in Hung Hom tested positive for H5 bird flu. The Agriculture, Fisheries, and Conservation Department reported that there are no poultry farms within 3-km of where it was found on April 4. The department has stepped up cleansing and disinfection of nearby venues, and issued advisories to poultry farmers, pet shops, and license holders of pet poultry and racing pigeons. +

+

+ + H5N1 in Poultry +
+ Israel +
+ . Bird flu was recently found in turkeys in Moshav Zavdiel. Health officials plan to cull the 20,000 birds housed there to prevent the spread of the disease. Moshav Zavdiel is the third farming community in Israel to experience an outbreak of bird flu in recent weeks. +

+

+ + Ireland (LPAI) + + . On March 29, strain of bird flu was detected in a flock of 153 pheasants that were caught wild, imported on March 10, and penned prior to release for a gun club in Cork. A total of 8 birds were infected with the disease and 3 of them died. The remaining 150 birds were culled as a precautionary measure. Tests at the Central Veterinary Research Laboratory revealed that the birds were positive for low pathogenic H5N2 bird flu. It is thought that the pheasants contracted the disease through contact with wild species while they were penned since laboratory evidence indicated that the birds had been infected after they were imported. Other precautionary measures, such as movement control, a 1-km exclusion zone, and disinfection of the premises. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . Officials from the Health Ministry and World Health Organisation (WHO) announced that a six-year-old girl from Kampong Chhnang province died on March 30 from H5N1 bird flu. The girl fell ill after eating meat from a sick chicken and her family attempted to treat her with medicine and injections. When she did not get better, on March 28, they sent her to Kuntha Bopha hospital for treatment. This is the first human case of H5N1 influenza reported in Kampong Chhnang province and the second death from bird flu in Cambodia this year. +

+

+ + Egypt + + . The Ministry of Health and Population of Egypt has notified WHO of two new cases of human infection with H5N1 bird flu virus. The first patient is a 2-year-old girl from Demiatta Governorate. She developed symptoms on March 19, was admitted to a hospital on March 20, and received oseltamivir. She is still being treated and is in good medical condition. The case was confirmed by the Central Public Health Laboratories on March 22. Epidemiological investigations into the source of infection indicate that the girl had been exposed to dead backyard poultry. The second patient, a 15 year-old girl from Giza Governorate, developed symptoms on March 25, was admitted to a hospital in critical condition on March 29, received oseltamivir on admission, and died on March 31. The case was confirmed by the Central Public Health Laboratories on March 31. Epidemiological investigations into the source of infection are ongoing. +

+
+ + H5N1 in Humans +
+ Indonesia +
+ . A 17-year-old boy in West Lombok died from H5N1 bird flu on March 9. He was a construction worker and began experiencing symptoms of fever on February 28 but did not seek treatment until March 1. His health worsened and he was admitted to the Mataram hospital where he died. Laboratory tests were positive for bird flu. A ministry investigation found that the boy had been exposed to a dead chicken shortly before getting sick. His death is the sixth human death from bird flu in Indonesia this year. Worldwide this year, there have been 18 cases of human infection with bird flu in six different countries reported to the WHO. Of these cases, 10 were fatalities. +
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+ Page Last Modified: +May 19, 2016 +

+
+ + +
diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_04_16.html b/data/flu-report-html/usgs_avian_flu_report_2012_04_16.html new file mode 100644 index 0000000..5c746ef --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_04_16.html @@ -0,0 +1,2072 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ News Update, April 13 +

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+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . An oriental magpie robin (Copsychus saularis) recently found dead in Hung Hom was confirmed by laboratory testing to be positive for H5N1 bird flu. The Agriculture, Fisheries and Conservation Department will continue to conduct inspections of poultry farms to make sure that they have taken the appropriate measures to prevent the spread of the virus. +

+

+ + H5N1 in Poultry +
+ Indonesia +
+ . Hundreds of chickens smuggled from East Java to Bali were found by quarantine officials in the baggage hold of an inter-province bus. Rapid tests on some of the birds were positive for H5N1 bird flu. The birds were culled but their owner was not arrested because he had not travelled on the bus. The birds were suspected of being intended for markets in Denpasar. Wahyu Savitri, the executive head of the Gilimanuk quarantine office, said that smuggling of poultry is rife in Bali and that three attempts have already been foiled this year. Bird flu has so far been detected nine districts and municipalities in Bali. +

+

+ + Bhutan + + . A bird flu outbreak is suspected in back-yard poultry in a village in Gongdue, Mongar after 30-40 chicks were reported dead from nine houses last month. The deaths were reported to the department of livestock on March 27 and the samples are yet to be confirmed positive by the National Center for Animal Health in Serbithang, Thimphu. The symptoms of the chicks that died were similar to those of bird flu, but there are 260 unaffected birds in the village, so officials are waiting for test results to confirm the cause of death in the chicks. Officials from the regional livestock development centre in Kanglung and Mongar are in the field creating awareness and investigating the deaths. +

+

+ + Taiwan (LPAI) + + . Low pathogenic bird flu was detected on a farm of 1,000 ducks in I-Lan province during active surveillance. The 20 infected ducks showed no clinical signs of illness. Laboratory tests at the Animal Health Research Institute were positive for H5N2 bird flu. An epidemiological investigation of surrounding farms was conducted. No other cases were found and the origin of the outbreak is unknown. Precautionary measures, such as movement control, quarantine, screening, zoning, and disinfection of the premises have been undertaken. +

+
+ + H5N1 in Humans +
+ Indonesia +
+ . A 17-year-old boy in West Lombok died from H5N1 bird flu on March 9. He was a construction worker and began experiencing symptoms of fever on February 28 but did not seek treatment until March 1. His health worsened and he was admitted to the Mataram hospital where he died. Laboratory tests were positive for bird flu. A ministry investigation found that the boy had been exposed to a dead chicken shortly before getting sick. His death is the sixth human death from bird flu in Indonesia this year. Worldwide this year, there have been 18 cases of human infection with bird flu in six different countries reported to the WHO. Of these cases, 10 were fatalities. +
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+
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diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_04_25.html b/data/flu-report-html/usgs_avian_flu_report_2012_04_25.html new file mode 100644 index 0000000..194cae0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_04_25.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Apr 25, 2012 +

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+ News Update, April 19 +

+
+

+ + H5N1 in Wild birds +
+ Israel +
+
+ . In the city of Bet Dagan in Israel last month, cats were observed eating turkey carcasses infected with highly pathogenic avian influenza. Veterinary Services and Animal Health reported that 2 cats, one sick and one dead, found near the affected turkey pens tested positive for the H5N1 bird flu, and the virus strain in the cats was similar to the strain found in infected turkeys from the Shalwa area in Israel. Two rounds of surveillance of cats caught throughout the village have not identified additional cases of highly pathogenic avian influenza. Continued control measures include movement control, screening, zoning, and disinfection. +

+

+ + H5N1 in Poultry +
+ China +
+ . An outbreak of H5N1 bird flu among several chicken farms in the northwestern Chinese region of Ningxia was recently reported. Last Friday, 23,880 chickens showed symptoms of avian influenza; of those, 10,468 died later. Test results from the National Avian Influenza Reference Laboratory confirmed the birds were infected with highly pathogenic avian influenza, and an additional 84,532 chickens were slaughtered to prevent the spread of the virus. Other control measures taken include quarantine, movement control, zoning, and disinfection of affected areas. +

+

+ + Israel + + . At the end of March, a 6-week-old turkey flock in the Zavdiel moshav was previously reported to be infected with highly pathogenic avian influenza. Repeat testing of the initial samples were inconsistent for the H5N1 virus, additional testing on the birds was implemented. These were all negative and suggest the turkeys were not infected with H5N1 bird flu. The poultry showed no symptoms of infection, and there were no deaths related with this event. The turkeys were culled before subsequent testing proved they were not infected with H5N1 bird flu. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Ministry of Health and Population of Egypt notified the World Health Organization that a 36-year-old female from the Giza governorate was infected with H5N1 bird flu. The woman developed symptoms after exposure to backyard poultry on April 1, was admitted to the hospital on April 7, and died the same day. Out of 167 human cases of avian influenza in Egypt, 60 have proved fatal. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_05_22.html b/data/flu-report-html/usgs_avian_flu_report_2012_05_22.html new file mode 100644 index 0000000..fe14ab6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_05_22.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from May 22, 2012 +

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+ News Update, May 18 +

+
+

+ + Taiwan + + . In Bei-gang Township, Yunlin County, an outbreak of the HPAI H5N2 virus has been confirmed by agricultural authorities. From the start of the outbreak on May 7 to May 12, nearly 4,000 chickens died from this outbreak. More than 11,000 chickens were culled as a control measure to control the infection. Additional control measures employed include movement control and quarantining the affected population. Testing from the Animal Health Research Institute of Taiwan has confirmed the diagnosis through gene sequencing. +

+

+ Separately, in the county of Taichung, Taiwan, 176 ducks were culled as part of an ongoing effort to control an LPAI H5N2 outbreak. Additional control measures that are being employed include movement control and quarantine. +

+

+ News Update, May 10 +

+
+

+ + H5N1 in Poultry +
+ India +
+
+ . In the Indian state of Tripura last month, an outbreak of H5N1 bird flu was reported in a district poultry farm. Out of a total of 4,668 birds there were 3,168 deaths. The source of the outbreak remains unknown. Control measures applied include: quarantine, disinfection of the affected area, movement control, and ongoing surveillance within a 10 km radius of the farm to prevent the spread of the disease. +

+

+ + South Africa (HPA H5N2) + + . In the West Cape Province of South Africa, 360 ostriches will be culled this week as part of an ongoing attempt to prevent the spread of the H5N2 bird flu in the Oudtshoorn area. Ninety-two of the birds had tested positive for the H5N2 virus on February 21, 2012. More than 40,000 commercially farmed ostriches have been culled since March of last year, crippling a once profitable industry. Methods currently in place to combat the outbreak include: quarantine, disinfection, and screening of ostriches. If this region remains virus free for three months, the South African Agricultural Department can petition the European Union (EU) to lift the current ban on ostrich imports to the EU. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_06_11.html b/data/flu-report-html/usgs_avian_flu_report_2012_06_11.html new file mode 100644 index 0000000..f003c80 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_06_11.html @@ -0,0 +1,2084 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jun 11, 2012 +

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+ News Update, June 11 +

+
+

+ + H5N1 in Wild birds + +
+ US customs agents seized a live songbird that was discovered onboard a flight from Taiwan to Los Angeles. A flight attendant had caught the bird and handed it over to customs agents when the flight landed on May 27. Customs agents suspect that one of the passengers had been attempting to smuggle the bird but screening and X-raying of all passengers, crew, and carry-on bags found no other birds, droppings, or feathers. Officials warn that smuggling animals can spread dangerous diseases like bird flu into the US. +
+

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . As of May 31, H5N1 bird flu had been discovered on 21 of 85 major poultry farms in Bangladesh this year and over 46,000 chicks had been culled. In response, an eight-member committee of experts was formed on June 5 by the National Advisory Committee to plan a vaccination program. The new committee has three days to submit its recommendation. The 22-member National Advisory Committee was formed last year to prevent and eliminate bird flu in Bangladesh. +

+

+ + Cambodia + + . An outbreak of H5N1 bird flu at Pring village in Kampong Speu began on May 27. The village was home to 1,304 birds, of which 564 became ill and died. The remaining 740 birds were culled to prevent the spread of the disease. The outbreak was discovered after the death of a 13-year-old girl from H5N1 bird flu on May 27 who lived in the same village. An investigation team from the National Veterinary Research Institute of the Department of Animal Health and Production went to the village to take samples and some tested positive for H5N1. The cause of the outbreak is unknown, but officials are taking preventative measures, such as movement control, disinfection of the premises, and dipping and/or spraying. +

+

+ + China + + . On June 6, the Ministry of Agriculture reported an outbreak of H5N1 bird flu in Gansu province. More than 6,200 chickens from the village of Dongguan showed symptoms of bird flu and 260 of them died. The National Avian Influenza Reference Laboratory confirmed H5N1 after testing samples collected from a farm in the village. Local authorities have sealed off the area, culled 18,460 chickens, and sterilized the premises. The ministry has also sent a team to the quarantined area to guide epidemic prevention and monitoring. +

+

+ + Russia (LPAI H9) + + . The Russian Federal Service for Veterinary and Phytosanitary Surveillance (Rosselkhoznadzor), announced that low pathogenic H9 bird flu was recently discovered among pathological material selected from a major Russian poultry company, Amur Chicken, in Blagoveshensk in Amur Oblast. After preliminary testing, experts suspect that the virus came from China, which lies across the river from Blagoveshensk. Rosselkhoznadzor warned that low pathogenic virus circulating among poultry could become more pathogenic, possibly leading to an outbreak of highly pathogenic bird flu. In April, 7,000 poultry died at this facility. These deaths were attributed to mycotoxins in the feed, but Veterinary Service specialists refuted this claim. Whether the two events are linked is not known at the present time. +

+

+ + H5N1 in Humans +
+ Hong Kong +
+ . The Centre for Health Protection of the Department of Health reported a human case of H5N1 bird flu infection in a 2-year-old boy who lived in Guangzhou City in Guangdong province. The patient developed symptoms on May 23 and went to a private clinic in Hong Kong on May 26. While there, he developed febrile convulsion and was transferred to Princess Margaret Hospital on May 28. Laboratory tests confirmed H5N1 as the cause of illness on June 2. It is believed that he contracted the disease when his mother took him to a wet market with live poultry in mid-May where they bought a live duck and had it slaughtered. He had also traveled with his family to Anhui province on May 20-22, but had no contact there with poultry. Eighty close contacts have tested negative for bird flu. The patient’s condition is serious and he is receiving isolated treatment at the hospital. +

+

+ + Cambodia + + . On May 26 in the Kampong Speu province of Cambodia, a 10-year-old girl has died after contracting the H5H1 strain of avian influenza. According to Cambodian Health Officials, the girl contracted the virus on May 20 after coming into contact with infected chickens in her home village of Pring, Bosedth district. Prior to the diagnosis from the Cambodian Pasteur Institute, the girl exhibited symptoms of fever and shortness of breath. The girl was admitted to the Kantha Bopha Hospital in Phnom Penh on May 25. This case is the third avian influenza fatality in Cambodia this year. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_06_28.html b/data/flu-report-html/usgs_avian_flu_report_2012_06_28.html new file mode 100644 index 0000000..cbc8b51 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_06_28.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ News Update, June 28 +

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+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . The Agriculture, Fisheries and Conservation Department (AFCD) reported on June 20 that a scaly-breasted munia (Lonchura punctulata) found dead in Yuen Long on June 18 has been confirmed to be positive for H5N1 bird flu. Cleansing and disinfection have been stepped up in the area and three chicken farms within 3 km of the find site were inspected. No signs of abnormal mortality or symptoms of bird flu were discovered on the farms, but they will be kept under enhanced surveillance as a precaution. The AFCD is encouraging all poultry farmers, bird shop owners, and license holders of pet poultry to strengthen precautionary and biosecurity measures against avian influenza. The department will continue monitoring and surveillance of wild birds. The Food and Environmental Hygiene Department (FEHD) remains vigilant in inspections of imported live poultry and live poultry stalls. The Department of Health continues to educate the public and remind them to maintain strict personal and environmental hygiene to prevent bird flu. The AFCD, FEHD, and the Customs and Excise Department are working together to deter the illegal import of poultry and birds into Hong Kong to ensure that all birds go through proper inspection and quarantine and to minimize the risk of bird flu. +

+

+ + H5N1 in Poultry +
+ Mexico (HPAI H7N3) +
+ . Mexican veterinary authorities are intensifying control measures for bird flu in a region that houses several large commercial farms after tests revealed that more than 200,000 birds in the area have died from highly pathogenic H7N3 bird flu. These are the first highly pathogenic bird flu outbreaks in Mexico since outbreaks of H5N2 in the mid 1990s. A report submitted to the World Organization for Animal Health (OIE) stated that intravenous pathogenicity tests revealed a highly pathogenic subtype of H7N3. The outbreaks began on June 13 at three commercial farms in Jalisco state, causing flu symptoms in the chickens. Of 1 million susceptible birds, 587,160 became ill and 211,424 died. About 60,000 have been culled so far to prevent the spread of the virus. Authorities are sampling birds at around 60 nearby farms, testing backyard poultry and poultry markets, instating quarantine measures in the region, limiting poultry movements near the outbreak, and conducting an epidemiologic investigation to determine the source of the virus. David A. Halvorson, DVM, an avian health expert at the University of Minnesota in St. Paul, said that U.S. poultry producers are always cautious about the potential for disease introduction from indirect contact with Mexican poultry. According to the U.S. Department of Agriculture (USDA), poultry imported from all countries except Canada must be quarantined for at least 30 days at a USDA Animal Import Center and be accompanied by import permits and veterinary health certificates. In 2004, highly pathogenic H7N3 outbreaks in British Columbia's Fraser Valley led to the culling of 19 million birds, and two related human infections were confirmed. The patients, both men who had been exposed to infected poultry on the farms, were the first known H7N3 infections in humans. Both had conjunctivitis with mild flulike symptoms. +

+

+ + South Africa (LPAI). + + Two commercial ostrich farms, one in Western Cape Province and one in Eastern Cape Province are experiencing outbreaks of low pathogenic H7N1. Tests at the Agricultural Research Council’s Onderstepoort Veterinary Institute on June 1 confirmed the presence of the virus. A total of 1,833 ostriches were housed on the two farms; 44 became ill and 1,493 (all of the ostriches on the Eastern Cape Province Farm) were slaughtered. The infection was discovered during routine surveillance. The source of the outbreak is unknown but control measures such as quarantine, movement control, screening, and disinfection of the premises have been undertaken. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_07_24.html b/data/flu-report-html/usgs_avian_flu_report_2012_07_24.html new file mode 100644 index 0000000..e86fd4f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_07_24.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jul 24, 2012 +

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+ News Update July 6, 2012 +

+
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+ + Hong Kong. + +
+ H5N1 has been identified in an Oriental magpie robin found dead at the Yen Po Street Bird Market in Mongkok. In response to the robin’s death, all the birds in the stall where the robin was found have been culled, and the market, which has almost 70 stalls, will close for three weeks. The remaining birds and workers at the marketplace are now under medical surveillance. +
+

+

+ + China. + +
+ In the Xinjiang region of China an outbreak of the H5N1 flu has killed 1,600 chickens and affected another 5,500 chickens. The outbreak started on June 20 at a farm run by the Xinjiang Production and Construction Corps but was not confirmed until July 2 by the Harbin Veterinary Research Institute. In an effort to contain this outbreak 156,439 chickens have been culled, and 116327 chickens have been vaccinated. Additional control measures in the Xinjiang region include a quarantine of the infected area and establishment of movement control. +

+

+ + South Africa. + +
+ In the West Cape Province of South Africa, the Deltamune laboratory has confirmed the outbreak of the H5N2 virus at two separate ostrich farms. The outbreaks occurred at the end of May, but were only reported publically this week. A total number of 1485 ostriches are affected with the virus, but there are no reported deaths. Current control measures include a quarantine of the infected area. +

+

+ + Indonesia. + +
+ In Karawang, West Java, an eight year old girl has died from an infection of the H5H1 bird flu virus on July 3. She had carried five freshly killed chickens from the Karawang wet market home on June 12 and passed the market on the way to school every day. She fell ill on June 18 during a trip to Singapore and was diagnosed with laryngitis by a doctor there. She was hospitalized on June 24 in Jakarta and at this point her symptoms included a high fever, nausea, and a persistent cough. Her symptoms worsened, and she was transferred to multiple hospitals and ultimately placed on a ventilator. The girl was not diagnosed with H5H1 until June 29. Since 2005 there have been 158 deaths attributed to avian flu in Indonesia. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_08_06.html b/data/flu-report-html/usgs_avian_flu_report_2012_08_06.html new file mode 100644 index 0000000..0670d1d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_08_06.html @@ -0,0 +1,2053 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update August 6, 2012 +

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+ + H5N1 in Wild birds +
+ Seals (H3N8) +
+
+ . Last fall, 162 harbor seals were stranded or died in the New England area of the United States. This week, a team of scientists including from the UGS published findings that suggest the seals had died from a novel H3N8 flu virus. The seal virus is closely related to strains of avian influenza strain commonly seen in wild birds. The seal virus contains mutations that have been shown to enable other flu viruses to infect mammals better and raises concern of the threat posed by this virus to both animals and people. This discovery indicates novel flu strains may emerge from unanticipated sources and has made scientists aware of the necessity to quickly identify new viruses and their potential risks to animals and humans alike. +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . In the Quang Binh and Hai Duong provinces of Vietnam last month, outbreaks of H5N1 bird flu occurred in four separate villages. Out of 17,642 total birds, 3,560 died from the virus while another 13,082 were culled to prevent the spread of disease. Additional control measures that have been adopted include a quarantine of infected areas, movement control measures, and disinfection of affected areas. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_08_10.html b/data/flu-report-html/usgs_avian_flu_report_2012_08_10.html new file mode 100644 index 0000000..c377662 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_08_10.html @@ -0,0 +1,2066 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Aug 10, 2012 +

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+ News Update August 10, 2012 +

+
+

+ + H5N1 in Poultry +
+ Vietnam +
+
+ . In the Ninh Binh province of Vietnam, two outbreaks of H5N1 highly pathogenic avian influenza that occur at the end of last month were reported this week. Out of 1,480 birds, 577 died from the disease, while an additional 903 birds were culled to prevent the spread of the bird flu virus. The source of these outbreaks remains unknown. Control measures applied include quarantine and movement control of poultry and disinfection of affected areas. Further control measures that will be applied are screening for bird flu, zoning, and vaccination in response to the outbreaks. +

+

+ News Update August 6, 2012 +

+
+

+ + H5N1 in Wild birds +
+ Seals (H3N8) +
+
+ . Last fall, 162 harbor seals were stranded or died in the New England area of the United States. This week, a team of scientists including from the UGS published findings that suggest the seals had died from a novel H3N8 flu virus. The seal virus is closely related to strains of avian influenza strain commonly seen in wild birds. The seal virus contains mutations that have been shown to enable other flu viruses to infect mammals better and raises concern of the threat posed by this virus to both animals and people. This discovery indicates novel flu strains may emerge from unanticipated sources and has made scientists aware of the necessity to quickly identify new viruses and their potential risks to animals and humans alike. +

+

+ + H5N1 in Poultry +
+ Vietnam +
+ . In the Quang Binh and Hai Duong provinces of Vietnam last month, outbreaks of H5N1 bird flu occurred in four separate villages. Out of 17,642 total birds, 3,560 died from the virus while another 13,082 were culled to prevent the spread of disease. Additional control measures that have been adopted include a quarantine of infected areas, movement control measures, and disinfection of affected areas. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_08_20.html b/data/flu-report-html/usgs_avian_flu_report_2012_08_20.html new file mode 100644 index 0000000..7b095e8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_08_20.html @@ -0,0 +1,2069 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 20, 2012 +

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+ News Update August 20, 2012 +

+
+

+ + H5N1 in Poultry +
+ Vietnam +
+
+ . In the Nam Dinh province of Vietnam, late last month and early this month, six outbreaks of highly pathogenic avian influenza have been reported in different villages across the province. A total of 7,702 birds were potentially affected and culled to prevent the spread of the disease. The source of these outbreaks remains unknown. Control measures applied include quarantine, movement control, and disinfection, while control measures yet to be applied include screening and zoning to monitor any possible future outbreaks. +

+

+ + H7N7 in Poultry +
+ Netherlands +
+ . Earlier this month, an outbreak of H7N7 low pathogenic avian influenza occurred on a farm in the Utrecht province. After free range laying hens tested positive for the virus at the Central Veterinary Institute in Lelystad, the entire flock (a total of 31,870 hens), was culled to prohibit the spread of the virus. The source of the outbreaks remains inconclusive and there are no other commercial poultry holdings in the 1km zone surrounding the affected area. To help reduce the risk of more outbreaks, zoning, disinfection, and movement control of poultry have been applied. +

+

+ + H5N1 in Humans +
+ Indonesia +
+ . In the Yogyakarta province of Indonesia, the Ministry of Health of Indonesia notified the World Health Organization on August 10, 2012, of a new human case of H5N1 bird flu. The victim, a 37 year old man, developed a fever on July 24, was hospitalized three days later, and died on July 30. He had four pet caged birds in his home, which was close to both a poultry slaughter house and a farm. Infection with the A(H5N1) virus was confirmed by the National Institute of Health and Development. There have been eight human cases of highly pathogenic avian influenza in Indonesia this year, all of them fatal. +

+

+ + H3N2 Variant in Humans +
+ United States +
+ . The U.S. Centers for Disease Control (CDC) reported on August 9, 2012, that there have been 145 cases of human infection with the H3N2 variant swine flu since July 12, 2012. This increase of confirmed cases is assumed to be the result of the exposure to infected pigs at farms, especially at state and county fairs. Increased reporting may also result from a change in the guidelines allowing local and state agencies to report of the detection of variant H3N2 rather than only the cases confirmed by the CDC. Four states have been affected by the outbreak so far, with 113 of the confirmed cases in Indiana, 30 in Ohio, and one in both Hawaii and Illinois. Additional cases, including additional states are to be expected as testing expands. Two people were hospitalized due to their illnesses, but are now home. No one has died from H3N2 infections in 2011 or 2012. Over 90% of the cases seen this year involved children. The public should exercise caution when attending fairs and should take these steps to avoid infection: wash hands, do not eat near or in pig pens, and avoid visibly ill animals. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_08_30.html b/data/flu-report-html/usgs_avian_flu_report_2012_08_30.html new file mode 100644 index 0000000..d658ed6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_08_30.html @@ -0,0 +1,2045 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Aug 30, 2012 +

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+ News Update August 30, 2012 +

+
+

+ + H5N1 Scare in Poultry +
+ India +
+
+ . Within the last two weeks, about 50,000 chickens have died in the North-24 Parganas district, West Bengal, generating concern of a potential bird flu outbreak. Blood samples have been sent to the Regional Disease Diagnostic Laboratory in Belgachia for testing. Preventive measures include spraying lime and bleaching powder in the area, distributing bird flu informational leaflets, and implementing an awareness campaign which urges people to wear gloves while feeding poultry and explains how to dispose of dead poultry carcasses properly. If the blood samples are found to be positive for avian influenza virus (H5N1), samples will be sent to the National Institute of Virology in Pune for confirmation. Once confirmed, rapid response teams can be deployed within three days to begin culling and initiate death surveillance of poultry. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_09_07.html b/data/flu-report-html/usgs_avian_flu_report_2012_09_07.html new file mode 100644 index 0000000..d17f7df --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_09_07.html @@ -0,0 +1,2051 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Sep 07, 2012 +

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+ News Update September 8, 2012 +

+
+

+ + H5N1 in Poultry +
+ China +
+
+ . In the Guangdong province of China, the Guangdong Provincial Agriculture Department is investigating a duck market in the city of Guangzhou after a two-year old boy from Hong Kong visited the market in mid-May and was confirmed to have H5N1 on June 5th. The Guangzhou Agriculture and Animal Husbandry Department has launched an inspection of the Jiangnandong Market, and according to the Municipal Animal Epidemic Disease Control and Prevention Center, one duck, out of 40 samples, has tested positive for the H5N1 virus. As of Tuesday, no other confirmed reports of human infection have been reported. +

+

+ + Vietnam + + . A new H5N1 avian flu virus (clade 2.3.2.1c) is spreading rapidly across northern and central Vietnam. As of September 6, 2012, seven provinces have bird flu epidemics and more than 180,000 poultry have been culled. The source of these outbreaks is inconclusive, although the vice president of the Vietnam Animal Husbandry Agency, Nguyen Thanh Son, believes chickens illegally imported from China were the source of the virus. Control measures applied include quarantine, movement control, disinfection, and strict regulation of the import of breeding chickens from China; while control measures yet to be applied include screening and zoning to monitor any possible future outbreaks and vaccination in response to the outbreaks. Experts say that the new avian flu virus developed in July and spread to the northern and central regions of Vietnam in August. The Central Veterinary Diagnosis Center will start testing the current vaccine against the new virus within the next couple of days. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_09_14.html b/data/flu-report-html/usgs_avian_flu_report_2012_09_14.html new file mode 100644 index 0000000..7b28bed --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_09_14.html @@ -0,0 +1,2053 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ +

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+ Avian Influenza Archive from Sep 14, 2012 +

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+ News Update September 14, 2012 +

+
+

+ + H5N1 in Poultry +
+ Mexico +
+
+ . The Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (Senasica) of the United States of Mexico reported on September 12, that in order to contain an outbreak of the H7N3 avian influenza virus, poultry farmers have killed 22.3 million birds between the months of June and August. The outbreak was first detected in the farms in the Los Altos region of the state of Jalisco. Farms are now allowed to restock as it has been three weeks since the last know outbreak with between 4.5 to 5 million birds being added each month. +

+

+ + H3N2 Variant in Humans +
+ United States +
+ . Incidents of swine flu are on the rise this year. To date, 297 people have caught a variant H3N2 virus from pigs in the U.S; one died, and 16 were hospitalized. Additionally, it has been reported that pigs in Korea may be carrying a strain of flu that is more dangerous and contagious than the controversial, experimental bird flu of last year. The recent increase in swine flu has scientists worried that not enough flu sampling and testing is being done to help prevent future outbreaks and continues the debate over if researchers should produce and publish information about such harmful viruses. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_09_20.html b/data/flu-report-html/usgs_avian_flu_report_2012_09_20.html new file mode 100644 index 0000000..5aa550f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_09_20.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Sep 20, 2012 +

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+ News Update September 20, 2012 +

+
+

+ + H5N1 in Poultry +
+ China +
+
+ . +
+ Earlier this week, the Chinese Ministry of Agriculture confirmed that the H5N1 avian flu virus was detected Zhangjiang, in the province of Guangdong. Symptoms were first reported on September 11, and since then, 6,300 ducks have died and 14,050 have been infected. To help reduce the risk of more outbreaks, all poultry in the contaminated area were culled and the area was disinfected. +

+

+ + Vietnam + + . +
+ Earlier this month, an outbreak of H5N1 occurred in the Quang Binh and Hoa Binh Provinces of Vietnam. A total of 400 birds were destroyed to prevent the spread of the disease. The source of these outbreaks remains unknown. Control measures applied include quarantine, movement control, and disinfection, while control measures yet to be applied include screening and zoning to monitor any possible future outbreaks. +

+

+ + H7N3 +
+ Mexico +
+ . +
+ The Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (Senasica) of the United States of Mexico continue their monitoring and sampling of birds in the western state of Jalisco and surrounding areas of Mexico in response to the outbreak of the H7N3 avian influenza virus that was first detected back in June. To date, 537 production units have been sampled. A total of 64,498 samples have been taken from farms in the infected area with 44 testing positive for H7N3 isolates. One wild bird has tested positive according to the report to OIE, but no further details was provided. Since news of the outbreak in June, 22.3 million birds have been killed to help prevent further spread of the virus. Additionally, 125.8 million doses of a booster vaccine have been distributed to at risk birds. Officials hope to cease vaccinations in the next 60-90 days as no new avian flu cases have been reported in the past four weeks. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_10_12.html b/data/flu-report-html/usgs_avian_flu_report_2012_10_12.html new file mode 100644 index 0000000..f97da1f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_10_12.html @@ -0,0 +1,2097 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Oct 12, 2012 +

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+ News Update October 4, 2012 +

+
+

+ + H5N2 in Poultry +
+ South Africa. +
+
+
+ Earlier this month, officials announced that an outbreak of the highly pathogenic avian influenza H5N2 virus had broken out on a commercial ostrich farm in Hessequa, a municipality located in the Western Cape Province of South Africa. A total of 1,930 birds were potentially affected and the culling of ostriches on the infected farm is taking place. The source of these outbreaks remains unknown. Control measures applied include quarantine and screening to monitor any possible future outbreaks. +

+

+ + H7N1 in Poultry +
+ South Africa. +
+
+ During a recent routine examination for highly pathogenic avian influenza, cases of the low pathogenic avian influenza H7N1 virus were identified in Camdeboo, a municipality of the Eastern Cape in South Africa, and Oudtshoorn, a town in the Western Cape province of South Africa. To date, 3,890 birds have been potentially affected and 90 have been culled to prevent the spread of the disease. The source of these outbreaks remains inconclusive. To help reduce the risk of more outbreaks, quarantine, movement control, screening, and disinfection of poultry have been applied. +

+

+ + H5N2 in Poultry +
+ South Africa. +
+
+ In the Western Cape provinces of Stellenbosch and Hessequa, the OIE Animal Health Information Department recently reported a case of the low pathogenic avian influenza H5N2 virus. One ostrich died and a total of 1,952 birds were potentially affected. The source of these outbreaks remains unknown. Control measures applied include quarantine, movement control, and screening to monitor any possible future outbreaks. +

+

+ News Update September 20, 2012 +

+
+

+ + H5N1 in Poultry +
+ China +
+
+ . +
+ Earlier this week, the Chinese Ministry of Agriculture confirmed that the H5N1 avian flu virus was detected Zhangjiang, in the province of Guangdong. Symptoms were first reported on September 11, and since then, 6,300 ducks have died and 14,050 have been infected. To help reduce the risk of more outbreaks, all poultry in the contaminated area were culled and the area was disinfected. +

+

+ + Vietnam + + . +
+ Earlier this month, an outbreak of H5N1 occurred in the Quang Binh and Hoa Binh Provinces of Vietnam. A total of 400 birds were destroyed to prevent the spread of the disease. The source of these outbreaks remains unknown. Control measures applied include quarantine, movement control, and disinfection, while control measures yet to be applied include screening and zoning to monitor any possible future outbreaks. +

+

+ + H7N3 +
+ Mexico +
+ . +
+ The Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (Senasica) of the United States of Mexico continue their monitoring and sampling of birds in the western state of Jalisco and surrounding areas of Mexico in response to the outbreak of the H7N3 avian influenza virus that was first detected back in June. To date, 537 production units have been sampled. A total of 64,498 samples have been taken from farms in the infected area with 44 testing positive for H7N3 isolates. One wild bird has tested positive according to the report to OIE, but no further details was provided. Since news of the outbreak in June, 22.3 million birds have been killed to help prevent further spread of the virus. Additionally, 125.8 million doses of a booster vaccine have been distributed to at risk birds. Officials hope to cease vaccinations in the next 60-90 days as no new avian flu cases have been reported in the past four weeks. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_10_22.html b/data/flu-report-html/usgs_avian_flu_report_2012_10_22.html new file mode 100644 index 0000000..8266ebf --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_10_22.html @@ -0,0 +1,2077 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update October 18, 2012 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . In the Bhaktapur District of Nepal, an outbreak of H5N1 bird flu at a poultry farm was confirmed on October 13th. After chickens began dying early in the week of October 7th, samples were sent to the Animal Health Laboratory in Nepal, verifying the birds were infected with highly pathogenic avian influenza. According to the report submitted to OIE, the outbreak may have began as early as Aug 27. The commercial later farm had dual purpose breeds of different age groups. Out of almost 2,000 chickens, 1,200 died from the disease, while on October 15, the remaining 780 were culled. The Directorate of Animal Health began disinfecting the area on Tuesday and will be increasing surveillance and monitoring of poultry farms near the infected locale. The District Public Health Office is conducting health screenings of local residents as well as educating the public on methods to avoid infection. +

+

+ News Update October 12, 2012 +

+
+

+ + H5N2 in Poultry +
+ South Africa. +
+
+
+ Earlier this month, officials announced that an outbreak of the highly pathogenic avian influenza H5N2 virus had broken out on a commercial ostrich farm in Hessequa, a municipality located in the Western Cape Province of South Africa. A total of 1,930 birds were potentially affected and the culling of ostriches on the infected farm is taking place. The source of these outbreaks remains unknown. Control measures applied include quarantine and screening to monitor any possible future outbreaks. +

+

+ + H7N1 in Poultry +
+ South Africa. +
+
+ During a recent routine examination for highly pathogenic avian influenza, cases of the low pathogenic avian influenza H7N1 virus were identified in Camdeboo, a municipality of the Eastern Cape in South Africa, and Oudtshoorn, a town in the Western Cape province of South Africa. To date, 3,890 birds have been potentially affected and 90 have been culled to prevent the spread of the disease. The source of these outbreaks remains inconclusive. To help reduce the risk of more outbreaks, quarantine, movement control, screening, and disinfection of poultry have been applied. +

+

+ + H5N2 in Poultry +
+ South Africa. +
+
+ In the Western Cape provinces of Stellenbosch and Hessequa, the OIE Animal Health Information Department recently reported a case of the low pathogenic avian influenza H5N2 virus. One ostrich died and a total of 1,952 birds were potentially affected. The source of these outbreaks remains unknown. Control measures applied include quarantine, movement control, and screening to monitor any possible future outbreaks. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_11_15.html b/data/flu-report-html/usgs_avian_flu_report_2012_11_15.html new file mode 100644 index 0000000..6c3801a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_11_15.html @@ -0,0 +1,2057 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Nov 15, 2012 +

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+ News Update November 15, 2012 +

+
+

+ + H5N1 in Poultry +
+ Bangladesh +
+
+ . Earlier this month, the Department of Livestock Services (DLS) culled more than 4,000 poultry infected with H5N1 bird flu at a farm in the Gazipur District of Bangladesh. Other farms in the area are rumored to be affected by the bird flu virus but so far have remained unreported to the DLS. To combat further spreading of the disease, the Drug Administration in Bangladesh has authorized the importation of a bird flu vaccine, which will be administered in the Gazipur District before widespread application. If successful in preventing further highly pathogenic avian influenza contamination, the vaccine will be applied nationwide. +

+

+ + Nepal + + . In the Bhaktapur District of Nepal, an outbreak of highly pathogenic avian influenza was reported November 2 at a commercial layer farm. Out of 2,000 birds, 1,220 died from the disease, while the remaining 780 were culled and 150 crates of eggs were destroyed to prevent the spread of infection. Although the source of this outbreak remains unknown, the farm’s poultry was tested for bird flu after egg production slowed, irregularities in egg shape and size increased, and a high mortality rate of poultry were recorded. All associated bird products have been destroyed, while the affected location has been disinfected. Other control measures include quarantine, movement control, screening, dipping and spraying, as well as surveillance throughout the country. +

+

+ + Australia + + . An unidentified strain of bird flu was detected in a free-range layer farm in New South Wales, causing a quarantine of the roughly 50,000 chickens. Five thousand hens have died and samples from the hens have determined the virus is not the H5N1 strain but rather highly pathogenic avian influenza with the H7 subtype. According to reports, the facility contains several dams that attract wild birds. Tracing and surveillance are in place to ensure the virus has not spread to other farms. The New South Wales Food Authority assured the public that the virus does not pose a risk to humans, and that the virus is killed by cooking at temperatures above 70 degrees C. Currently, only the H5N1strain can transmit from birds to humans. Scientists in Australia are experimenting with “gene silencing” in an effort to immunize chickens against the bird flu virus. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_11_30.html b/data/flu-report-html/usgs_avian_flu_report_2012_11_30.html new file mode 100644 index 0000000..5d83a1e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_11_30.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update November 30, 2012 +

+
+

+ + H5N1 in Poultry +
+ United Nations Food and Agriculture Organization. +
+
+
+ The United Nations Food and Agriculture Organization (FAO) recently reported a decline in H5N1 avian influenza outbreaks in poultry and wild birds over the past year, especially in the second quarter. From April to June of this year, six countries, Bangladesh, Cambodia, China, Egypt, India, and Indonesia, reported 98 domestic poultry outbreaks and 5 wild bird outbreaks, compared to 508 outbreaks during the same time last year. While the decline is good news, the FAO cautions that “not all outbreaks are reported, making it difficult to tell if the world has actually made progress in H5N1 control.” The report also confirmed that during the second quarter, nine human cases of the H5N1 have been reported in Cambodia, China, Egypt, and Indonesia. +

+

+ + Taiwan. + +
+ The Animal Disease Control Center of Chiayi County has placed a ban on the movement of chickens at a chicken farm in Puzih City after discovering cases of low-pathogenic H5N2 avian influenza. Because the virus is low-pathogenic, the 15,700 chickens will not be culled; rather, they will be monitored and the eggs will be disinfected before being sold. All poultry farms within a 3-kilometer radius are being monitored for further outbreaks. +

+

+ Additionally, in Penghu County on the Penghu Islands located off the western coast of Taiwanan, 200 chickens have died due to an outbreak of H5N2. To prevent further outbreaks, all chickens at the affected farm were exterminated and all of the chicken farms within a 3-kilometer radius will continue to be monitored for three months. +

+

+ + Russia. + +
+ On lakes near the Black Sea in the southern Krasnodar region of Russia, officials recently confirmed that about 4,000 wild ducks have been found dead. A spokeswoman from Rosselkhoznadzor, Russia’s Federal Service for Veterinary and Phytosanitary Surveillance, said that the birds’ remains are being tested and the H5 virus is being confirmed and blamed for the deaths. To prevent further outbreaks, poultry and humans are being vaccinated. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_12_14.html b/data/flu-report-html/usgs_avian_flu_report_2012_12_14.html new file mode 100644 index 0000000..9188f33 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_12_14.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update December 13, 2012 +

+
+
+

+ H5N1 in Wild birds +

+
+
+ + + + Russia. + +
+Earlier this week, the death of at least 4,000 wild birds in Russia?s southern Krasnodar Krai region since the end of November, was found to be due to an outbreak of H5N1. The government has issued a state of emergency on the entire region and has ordered all poultry farms to cease operating until further notice. Vaccines were delivered to infected farms and 98 percent of the poultry population has been vaccinated. Rosselkhoznadzor, the Russian veterinary watchdog, will continue to inspect all poultry farms in the region to prevent further outbreaks. +

+ H5N1 in Poultry +

+

+ + Indonesia. + +
+ According to the Indonesian Agriculture Ministry, a new, more dangerous type of bird flu strain has been discovered in Indonesia and has killed more than 300,000 ducks in Central, East and West Java since November. In a recent letter, the Agriculture Ministry?s veterinary chief Syukur Iwantoro explained that this new virus strain, with clade 2.3.2, is a different clade to what is usually found in Indonesia. All of the previous H5N1 outbreaks in Indonesia had been viruses from clade 2.1. While H5N1 viruses in Egypt tends to be clade 2.2, clade 2.3.2 viruses have previously been found in but not Indonesia. (A clade is a group of organisms with a common ancestor.) +

+

+ To prevent further outbreaks, Iwantoro is urging further research to be done to identify the origins of the virus. In the meantime, officials are monitoring all birds coming in and out of the country and are urging people to consume poultry with caution until more is known about this new, dangerous strain. +

+

+ + Taiwan. + +
+ The World Organization for Animal Health (OIE) recently reported that an outbreak of highly pathogenic avian influenza (HPAI) H5N2 has been confirmed at a farm in Ma-Gong City, located in the Eastern Taiwan Region. All 800 chickens at the infected poultry farm were culled and poultry farms surrounding the infected area were being tested to prevent further outbreaks. +

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diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_12_21.html b/data/flu-report-html/usgs_avian_flu_report_2012_12_21.html new file mode 100644 index 0000000..2538eb0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_12_21.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 21, 2012 +

+
+ + newer + +
+

+ News Update December 20, 2012 +

+
+

+ + H5N1 in Poultry +
+ Indonesia +
+
+ . In the Indramayu Regency in West Java and in Pagedangan in East Java, outbreaks of bird flu was reported on December 5, killing over1,100 ducks and five chickens. Tests conducted at the Veterinary Investigation and Testing Center confirmed all deaths were caused by bird flu. Infected areas have been disinfected, but the remaining living ducks have not been culled. Instead, the Head of Animal Health Inspector in the Department of Agriculture and Livestock, Dian Daju, is asking owners to keep the remaining ducks caged to prevent the spread of disease. Meanwhile in the Yogyakarta Special Region and Jambi Province of Indonesia, thousands of chickens have died over the past few weeks and officials suspect the deaths to be caused by bird flu. Samples have been sent for testing to confirm the cause of death. While waiting for test results, affected areas are being sprayed with disinfectant to prevent the suspected bird flu virus from spreading. +

+

+ + Nepal + + . Beginning on December 13, about 3,000 chickens have died over the course of a week at a poultry farm in Dharke of Dhading district, Bagmati Zone in Nepal. The Central Animal Disease Investigation Laboratory confirmed the deaths were due to avian influenza. On December 20, a Rapid Response Team reached the infected poultry farm to conduct cleaning, disinfection, and the disposal of affected poultry products, such as manure, eggs and feed, to stop the disease from spreading. Another team is in charge of surveillance of nearby farms, watching for bird flu symptoms. Earlier in the week, farmers in the same town of Dharke had seized two trucks carrying frozen chicken destined for Kentucky Fried Chicken restaurants in Nepal over concerns of illegal importation of chicken from India. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . On December 3, a 2-year-old girl from the Damietta governorate in Egypt was hospitalized for bird flu according to a World Health Organization report this week. She began treatment with Oseltamivir the next day. The source of infection remains unknown, but the girl was exposed to backyard poultry before her illness began. +

+

+ + Indonesia + + . In West Java, a 4-year-old boy developed a cold and fever beginning November 30 and was treated at a community health center the following day. Several days later, on December 6, he was admitted to the Tangerang District Hospital with continuing symptoms of fever, cough, and shortness of breath; he died the same day. The boy is believed to have contracted the H5N1 bird flu virus after having direct contact with duck carcasses in his neighborhood. +

+

+ A 54-year-old man is currently undergoing treatment at the St. Elisabeth Hospital in the city of Semarang in Central Java for bird flu. His infection of bird flu has not been confirmed, but the man displays symptoms of a cough, cold, and high fever that could be contributed to bird flu. As of December 18, more than 62,000 ducks in the province are believed to have died from the H5N1 virus. +

+
+

+ + Back + +

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2012_12_27.html b/data/flu-report-html/usgs_avian_flu_report_2012_12_27.html new file mode 100644 index 0000000..0cd2199 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2012_12_27.html @@ -0,0 +1,2072 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 27, 2012 +

+
+ + newer + +
+

+ News Update December 27, 2012 +

+
+

+ + H5N1 in Poultry + +

+

+ + Bangladesh + + . Authorities in Gazipur District are culling over 150,000 poultry birds and destroying 500,000 eggs after confirming an outbreak of H5N1 bird flu on December 24. The birds on a farm owned by Bay-Agro Industries Ltd. had started dying around December 20, and around 150 workers have been culling infected poultry. Tests done at the Gazipur District Livestock Hospital in Dhaka showed that the birds had died from H5N1 bird flu, prompting the government to get involved in the culling of all birds on the farm. The Upazila Livestock Department is investigating the source of the outbreak and are monitoring for infections in poultry within a one kilometer radius of the farm. The owner will be compensated for the loss of eggs and birds. This is the 23rd outbreak of H5N1 bird flu in Bangladesh this year. +

+

+ + Indonesia + + . A laboratory test conducted by the Veterinary Center (BBVet) Yogyakarta found that a new strain of H5N1 bird flu was responsible for killing thousands of ducks in Yogyakarta, Central Java, and East Java since September 2012. The new strain, first found in Nepal in 2010, has been identified as H5N1 clade 2.3. So far, 113,700 ducks have reportedly died because of the virus over the last four months (64,000 in Central Java, 45,000 in East Java, and 4,700 in Yogyakarta). +

+

+ In West Java, the head of the West Java Animal Husbandry Agency, Koesmayadie Tatang Padmadinata reported that in the first half of December, 2,907 ducks had died after being infected with the new strain of the avian flu. In anticipation of the possible spread of the new strain, the animal husbandry office distributed disinfectant all across the province, especially in regions where confirmed cases had been found. They are also examining the new virus strain at the animal drug examination and certification center to determine whether or not the old vaccine will protect birds from the new virus. There are 222 officers in the province tasked with monitoring for H5N1 and reporting new outbreaks within 24 hours. +

+

+ The Ministry of Agriculture confirmed that thousands of chickens died from H5N1 bird flu in Banten and West Java provinces between December 16 and December 22. West Java reported that around 8,000 chickens died from the virus during this time period. It is not yet known whether they died from the new strain of the virus, but the chickens that died were being kept in cages with ducks. Director of Animal Health at the Directorate General of Livestock and Animal Health, Pujiatmoko, said, "We are conducting strict monitoring to secure infected areas." He added that the Ministry disinfects poultry cages and burns and buries poultry that have died suddenly. They are prohibiting the mixing of ducks and other birds in one cage and banning the sale of sick birds. Agriculture Minister Suswono said the ministry will aid farmers who have suffered losses through the death of their poultry. +

+

+ + Nepal + + . Rapid response teams from the District Animal Health Office of Kathmandu destroyed over 19,000 eggs on December 25 after bird flu was confirmed in a Kathmandu-based poultry farm. The central veterinary laboratory under the Directorate of Animal Health (DoAH) confirmed bird-flu virus at the private farm owned by Basnet on December 23. The owner reported the outbreak when birds began dying. He claimed that all of his 2,500 chickens had already died and were buried by the time the rapid response team arrived. However, the rapid response team dug where he claimed to have buried the chickens and found nothing. Basnet is in police custody and the location of the poultry is being investigated. They suspect that he may have quickly sold the chickens at market. A meeting of the district co-ordination committee determined that the eggs should be destroyed and the farm disinfected. Bird flu was confirmed on another private farm owned by Pokharel within 50 meters of Basnet’s farm on December 26. According to Narayan Prasad Ghimire, senior veterinarian at DoAH, around 3,000 chickens were found to have been infected by the virus. Department of Animal Health officials on Wednesday culled over 2240 chickens and destroyed 700 kilograms of chicken grain and 105 eggs on the farm. Both sites and surrounding poultry farms have been placed under surveillance. Locals have been alerted about the possible spread of the disease and have been warned to cook chicken well before eating it. +

+

+ + Germany (LPAI H5) + + . Low pathogenic bird flu was reported in the Schleswig-Holstein state on December 21. The outbreak began on a farm of 1522 birds on December 18. The disease was confirmed by the Friedrich-Loffler Institute on December 21 and was identified as the H5 subtype. All of the birds were culled to prevent the virus from spreading. The source of the outbreak is unknown, but control measures such as control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the premises have been undertaken. The last outbreak of bird flu in Germany had occurred in August 2011. +

+
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_01_03.html b/data/flu-report-html/usgs_avian_flu_report_2013_01_03.html new file mode 100644 index 0000000..de67d36 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_01_03.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 03, 2013 +

+
+ + newer + +
+

+ News Update January 3, 2013 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . On January 2, a District Animal Health Office’s (DAHO) rapid response team culled 2,640 chickens at a poultry farm located in Sitapaila near Nepal’s capital city, Kathmandu, after receiving confirmation the night before that the birds were infected with H5N1 bird flu. This is the fourth farm to be affected in December and was located less than 500 meters from the first outbreak in Dharke. An additional 527 eggs and 25 kilograms of chicken feed were also destroyed to prevent the spread of the virus. The DAHO believes the source of this outbreak may have come from local farmers, who visited one of the other poultry farms in Kathmandu that suffered an outbreak of highly pathogenic avian influenza last week. These farmers then returned to their farms and could have transmitted the virus to their own poultry. Surveillance of the affected area has increased, and the rapid response team deployed by the DAHO has disinfected the poultry farm. +

+

+ In the Nuwakot district of Nepal, an outbreak of highly pathogenic avian influenza was reported this week. A sample of a dead chicken at a residence in the village of Chaughada was sent for testing after other local chickens began to die. The test for bird flu was positive, and a team was dispatched from the capital to cull any other infected birds in the area. The source of the virus is believed to be two broiler chickens imported from the capital, Kathmandu, where several outbreaks of bird flu have recently occurred. Schools in the affected area were closed for three days to prevent the spread of the virus through human contact with other birds. +

+

+ News Update December 27, 2012 +

+
+

+ + H5N1 in Poultry + +

+

+ + Bangladesh + + . Authorities in Gazipur District are culling over 150,000 poultry birds and destroying 500,000 eggs after confirming an outbreak of H5N1 bird flu on December 24. The birds on a farm owned by Bay-Agro Industries Ltd. had started dying around December 20, and around 150 workers have been culling infected poultry. Tests done at the Gazipur District Livestock Hospital in Dhaka showed that the birds had died from H5N1 bird flu, prompting the government to get involved in the culling of all birds on the farm. The Upazila Livestock Department is investigating the source of the outbreak and are monitoring for infections in poultry within a one kilometer radius of the farm. The owner will be compensated for the loss of eggs and birds. This is the 23rd outbreak of H5N1 bird flu in Bangladesh this year. +

+

+ + Indonesia + + . A laboratory test conducted by the Veterinary Center (BBVet) Yogyakarta found that a new strain of H5N1 bird flu was responsible for killing thousands of ducks in Yogyakarta, Central Java, and East Java since September 2012. The new strain, first found in Nepal in 2010, has been identified as H5N1 clade 2.3. So far, 113,700 ducks have reportedly died because of the virus over the last four months (64,000 in Central Java, 45,000 in East Java, and 4,700 in Yogyakarta). +

+

+ In West Java, the head of the West Java Animal Husbandry Agency, Koesmayadie Tatang Padmadinata reported that in the first half of December, 2,907 ducks had died after being infected with the new strain of the avian flu. In anticipation of the possible spread of the new strain, the animal husbandry office distributed disinfectant all across the province, especially in regions where confirmed cases had been found. They are also examining the new virus strain at the animal drug examination and certification center to determine whether or not the old vaccine will protect birds from the new virus. There are 222 officers in the province tasked with monitoring for H5N1 and reporting new outbreaks within 24 hours. +

+

+ The Ministry of Agriculture confirmed that thousands of chickens died from H5N1 bird flu in Banten and West Java provinces between December 16 and December 22. West Java reported that around 8,000 chickens died from the virus during this time period. It is not yet known whether they died from the new strain of the virus, but the chickens that died were being kept in cages with ducks. Director of Animal Health at the Directorate General of Livestock and Animal Health, Pujiatmoko, said, "We are conducting strict monitoring to secure infected areas." He added that the Ministry disinfects poultry cages and burns and buries poultry that have died suddenly. They are prohibiting the mixing of ducks and other birds in one cage and banning the sale of sick birds. Agriculture Minister Suswono said the ministry will aid farmers who have suffered losses through the death of their poultry. +

+

+ + Nepal + + . Rapid response teams from the District Animal Health Office of Kathmandu destroyed over 19,000 eggs on December 25 after bird flu was confirmed in a Kathmandu-based poultry farm. The central veterinary laboratory under the Directorate of Animal Health (DoAH) confirmed bird-flu virus at the private farm owned by Basnet on December 23. The owner reported the outbreak when birds began dying. He claimed that all of his 2,500 chickens had already died and were buried by the time the rapid response team arrived. However, the rapid response team dug where he claimed to have buried the chickens and found nothing. Basnet is in police custody and the location of the poultry is being investigated. They suspect that he may have quickly sold the chickens at market. A meeting of the district co-ordination committee determined that the eggs should be destroyed and the farm disinfected. Bird flu was confirmed on another private farm owned by Pokharel within 50 meters of Basnet’s farm on December 26. According to Narayan Prasad Ghimire, senior veterinarian at DoAH, around 3,000 chickens were found to have been infected by the virus. Department of Animal Health officials on Wednesday culled over 2240 chickens and destroyed 700 kilograms of chicken grain and 105 eggs on the farm. Both sites and surrounding poultry farms have been placed under surveillance. Locals have been alerted about the possible spread of the disease and have been warned to cook chicken well before eating it. +

+

+ + Germany (LPAI H5) + + . Low pathogenic bird flu was reported in the Schleswig-Holstein state on December 21. The outbreak began on a farm of 1522 birds on December 18. The disease was confirmed by the Friedrich-Loffler Institute on December 21 and was identified as the H5 subtype. All of the birds were culled to prevent the virus from spreading. The source of the outbreak is unknown, but control measures such as control of wildlife reservoirs, quarantine, movement control, screening, zoning, and disinfection of the premises have been undertaken. The last outbreak of bird flu in Germany had occurred in August 2011. +

+
+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_01_18.html b/data/flu-report-html/usgs_avian_flu_report_2013_01_18.html new file mode 100644 index 0000000..63b2f5b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_01_18.html @@ -0,0 +1,2060 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 18, 2013 +

+
+ + newer + +
+

+ News Update January 18, 2013 +

+
+

+ + H5N1 in Poultry + +

+

+ + Bhutan + + . According to the National Veterinary Laboratory, a total of 13 outbreaks of H5N1 have been confirmed in four provinces throughout Bhutan: Chhukha, Thimphu, Mongar, and Dagana. Out of 8,599 birds, 412 died while the remaining 6,623 were culled to prevent further spread of the virus. The source of these outbreaks remains unknown. Various control measures being applied include quarantine, movement control, screening, and disinfection of contaminated areas. +

+

+ + Nepal + + . Four confirmed cases of H5N1 were reported on poultry farms in the Kaski District of Pokhara on the 16th of January. Officials have culled over 2,000 chickens, destroyed the feed, and are supervising the infected farms for the next couple of months to prevent further flu outbreaks. +

+

+ + Mexico (HPAI H7N3) + + . Two outbreaks of highly pathogenic avian influenza, H7N3, were reported on the 12th of January on two farms in the western Mexican state of Jalisco. Officials from Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (SENASICA) are reporting that out of 397,513 birds, 18,009 have died. To help prevent further outbreaks, birds at both farms will be culled. Further control measures include quarantine, movement control, and screening and zoning. The origin of these outbreaks remains unknown, and national surveillance will continue. +

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_01_25.html b/data/flu-report-html/usgs_avian_flu_report_2013_01_25.html new file mode 100644 index 0000000..420dcae --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_01_25.html @@ -0,0 +1,2057 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 25, 2013 +

+
+ + newer + +
+

+ News Update January 24, 2013 +

+
+

+ + H5N1 in Humans + +

+

+ + Indonesia + + . Health officials are confirming that a four-year-old boy died of H5N1 on December 6, 2012, after coming in contact with dead, infected fowl near his home in the West Java District of Bogor. Indonesia has been hit particularly hard with the deadly virus with a total of 160 deaths this year alone. It is unclear if the boy was infected with the new strain of HPAI H5N1 (clade 2.3.2) that was first found in Indonesia in September of last year, but as of a week ago, Tjandra Yoga Aditama, the director of disease control and public health at the Health Ministry, said that the new clade had not infected any Indonesians at that time. +

+

+ While the source of the outbreak has not been confirmed, officials believe the virus may have been brought in through imported ducks. Officials are concerned that the H5N1 virus may have the potential to mutate which would affect countries worldwide. +

+

+ + Cambodia + + . The World Health Organization (WHO) confirmed three new human cases of H5N1 since the start of the year, two of them being fatal, in the southeastern Takeo province and in central Kampong Speu province of Cambodia. The victims, a 15-year-old girl and a 35-year-old man, died after being hospitalized with bird flu. An eight-month-old boy was also treated and survived. Last year, Cambodia reported three cases of H5N1, all of them fatal. +

+
+

+ + Back + +

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_02_01.html b/data/flu-report-html/usgs_avian_flu_report_2013_02_01.html new file mode 100644 index 0000000..d023993 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_02_01.html @@ -0,0 +1,2061 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 01, 2013 +

+
+ + newer + +
+

+ News Update February 1, 2013 +

+
+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . An outbreak of H5N1 was reported earlier this week in Tuen Mun in the New Territories, Hong Kong. A black-headed gull, found dead at Mouse Island children’s playground as part of an ongoing surveillance program on wild birds, tested positive for the deadly H5N1 bird flu virus at the Tai Lung Veterinary Laboratory, Agriculture, Fisheries & Conservation Department. No spread of the disease is apparent. To prevent further outbreaks, various control measures are being applied including screening and disinfection of contaminated areas. Additionally, national surveillance will continue on poultry farms, markets, and pet bird shops around the country. +
+
+ + H5N1 in Poultry +
+ Cambodia +
+ . One outbreak of the highly pathogenic avian influenza virus, H5N1, was reported earlier this month in the Takeo province of Cambodia. Officials have been on high alert following the confirmation of a death of a 17-year old girl from Takeo. Since the news of her death, an investigation team from the National Veterinary Research Institute and the Department of Animal Health and Production have been collecting and testing samples from poultry in the affected area. The team found that 2,304 have died since January 9th and the remaining 4,743 birds were culled to prevent further spread of the virus. The source of the outbreak remains unknown. Various control measures being applied include movement control, disinfection of contaminated areas, and dipping/spraying. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The World Health Organization (WHO) confirmed two new human cases of H5N1 in Cambodia, bringing the number of human deaths to five since the start of the year. The most recent victims, a 17-month-old girl and a nine-year-old girl, from the southern provinces of Kampong Speu and Kampot, both died after contracting the deadly virus. The Cambodian Health Minister is urging parents to keep children away from dead or ill poultry and to wash their hands often. Cambodia has been hit especially hard with bird flu over the years with a total of 26 deaths, 17 of them in children under the age of 14. +

+
+

+ + Back + +

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_02_11.html b/data/flu-report-html/usgs_avian_flu_report_2013_02_11.html new file mode 100644 index 0000000..a4d15ce --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_02_11.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 11, 2013 +

+
+ + newer + +
+

+ News Update February 7, 2013 +

+
+

+ + H5N1 in Wild birds +
+ Thailand +
+
+ . The Thailand Department of National Parks, Wildlife, and Plant Conservation is continuing its nationwide campaign to randomly test birds around the country for the deadly avian influenza virus, H5N1, in hopes to prevent further outbreaks. The team recently collected samples from over 300 barn swallows in Phuket province and will be collecting samples in Samut Prakan province, Trang provice, and Krabi province in the upcoming months. In addition to looking at the birds’ overall health, they are also testing their saliva and droppings. Since 2004, Thailand has reported 25 cases of human infection, 17 resulting in deaths; however, the country has not had any human deaths in the past six years and officials hope that the randomized tests will help combat further spread. +

+

+ + H5N1 in Poultry +
+ Bangladesh +
+ . According to the Bangladesh Animal Health and Administration, a total of 153,477 birds in the Dhaka District were susceptible to the H5N1 virus resulting in 8,509 deaths, while the remaining 144,968 were culled to prevent further spread of the disease. The source of these outbreaks remains unknown. Various control measures being applied include stamping out, disinfection of contaminated areas, and movement control within the country. +

+

+ + Vietnam + + . The National Steering Committee for Bird Flu Control reported outbreaks of H5N1 at a meeting earlier this week. Two poultry farms in Ben Cau District and Tay Ninh Town were found to be the sources of the outbreak resulting in the death and culling of about 3,500 birds. The farms are located across the border from Cambodia where several human H5N1 cases were reported last month. The Vietnamese public security force, along with veterinary service personnel, are closely monitoring poultry coming in and out of the country due to the recent human deaths in neighboring Cambodia and the upcoming lunar New Year where large amounts of chicken meat will be consumed. +

+

+ News Update February 1, 2013 +

+
+

+ + H5N1 in Wild birds +
+ Hong Kong +
+
+ . An outbreak of H5N1 was reported earlier this week in Tuen Mun in the New Territories, Hong Kong. A black-headed gull, found dead at Mouse Island children’s playground as part of an ongoing surveillance program on wild birds, tested positive for the deadly H5N1 bird flu virus at the Tai Lung Veterinary Laboratory, Agriculture, Fisheries & Conservation Department. No spread of the disease is apparent. To prevent further outbreaks, various control measures are being applied including screening and disinfection of contaminated areas. Additionally, national surveillance will continue on poultry farms, markets, and pet bird shops around the country. +
+
+ + H5N1 in Poultry +
+ Cambodia +
+ . One outbreak of the highly pathogenic avian influenza virus, H5N1, was reported earlier this month in the Takeo province of Cambodia. Officials have been on high alert following the confirmation of a death of a 17-year old girl from Takeo. Since the news of her death, an investigation team from the National Veterinary Research Institute and the Department of Animal Health and Production have been collecting and testing samples from poultry in the affected area. The team found that 2,304 have died since January 9th and the remaining 4,743 birds were culled to prevent further spread of the virus. The source of the outbreak remains unknown. Various control measures being applied include movement control, disinfection of contaminated areas, and dipping/spraying. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The World Health Organization (WHO) confirmed two new human cases of H5N1 in Cambodia, bringing the number of human deaths to five since the start of the year. The most recent victims, a 17-month-old girl and a nine-year-old girl, from the southern provinces of Kampong Speu and Kampot, both died after contracting the deadly virus. The Cambodian Health Minister is urging parents to keep children away from dead or ill poultry and to wash their hands often. Cambodia has been hit especially hard with bird flu over the years with a total of 26 deaths, 17 of them in children under the age of 14. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_02_15.html b/data/flu-report-html/usgs_avian_flu_report_2013_02_15.html new file mode 100644 index 0000000..d47760d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_02_15.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Feb 15, 2013 +

+
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+ News Update February 14, 2013 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . The Nepalese Directorate of Animal Health confirmed earlier this week that the deadly H5N1 virus had been detected at a private poultry farm outside of Nepal’s capital city Kathmandu. The 2,390 birds at the infected farm were culled and their feed was destroyed to help prevent further outbreaks. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The World Health Organization (WHO) confirmed two new cases of H5N1 in Cambodia, bringing the number of human deaths to seven since the start of the year. The most recent victims, a three-year-old girl and a five-year-old girl, from the southern provinces of Kampot and Takeo respectively, both died after contracting the deadly virus. +

+

+ The Ministry of Health issued a statement earlier this week expressing concern that “although the virus does not easily spread among humans, if the virus changes, it could easily be spread like seasonal influenza.” To prevent such a pandemic and to hopefully prevent the virus from spreading, the Ministry of Health is testing villagers from recently infected communities and training additional staff in all public and private health facilities in at-risk provinces to ensure no new human cases are missed. Additionally, the U.N.’s Food and Agriculture Organization is working with animal health officials throughout the country in an attempt to start diagnosing bird flu in poultry before it is spread to humans. +

+

+ + China + + . The Ministry of Health confirmed two new human cases of H5N1 earlier this week, one of them being fatal, in Guizhou province of southwest China. A 21-year-old woman died after contracting the virus while the other victim, a 31-year old man, is in critical condition. According to the health officials, “no epidemiological connections have been found between the two cases." Health officials throughout China are on high alert as millions of people are traveling across the country in close-knit quarters to celebrate the Lunar New Year, increasing the risk of spreading infectious diseases. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_02_22.html b/data/flu-report-html/usgs_avian_flu_report_2013_02_22.html new file mode 100644 index 0000000..6b4748c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_02_22.html @@ -0,0 +1,2081 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Feb 22, 2013 +

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+ News Update February 21, 2013 +

+
+

+ + H5N1 in Poultry +
+ Mexico +
+
+ . Officials from Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (SENASICA) reported earlier this week that more than one million chickens in the north-central state of Guanajuato were exposed to the deadly bird flu virus. Health authorities have established a quarantine around the 12 affected farms and are vaccinating poultry throughout the state to help prevent further outbreaks. Additionally, the affected farms are being cleaned and disinfected and around 900,000 chickens may be culled in an effort to contain the virus and prevent the disease from spreading further. +

+

+ + Germany + + . Germany’s state agriculture ministry recently reported a potential case of H5N1 on a poultry farm in the eastern state of Brandenburg and is awaiting the final test results. All 14,500 at-risk chickens have been culled to help prevent further spread of the virus. The source of this outbreak remains unknown and various controls measures are being applied including quarantine, movement control, screening, disinfection of contaminated areas, and control of wildlife reservoirs. +

+

+ News Update February 14, 2013 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . The Nepalese Directorate of Animal Health confirmed earlier this week that the deadly H5N1 virus had been detected at a private poultry farm outside of Nepal’s capital city Kathmandu. The 2,390 birds at the infected farm were culled and their feed was destroyed to help prevent further outbreaks. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The World Health Organization (WHO) confirmed two new cases of H5N1 in Cambodia, bringing the number of human deaths to seven since the start of the year. The most recent victims, a three-year-old girl and a five-year-old girl, from the southern provinces of Kampot and Takeo respectively, both died after contracting the deadly virus. +

+

+ The Ministry of Health issued a statement earlier this week expressing concern that “although the virus does not easily spread among humans, if the virus changes, it could easily be spread like seasonal influenza.” To prevent such a pandemic and to hopefully prevent the virus from spreading, the Ministry of Health is testing villagers from recently infected communities and training additional staff in all public and private health facilities in at-risk provinces to ensure no new human cases are missed. Additionally, the U.N.’s Food and Agriculture Organization is working with animal health officials throughout the country in an attempt to start diagnosing bird flu in poultry before it is spread to humans. +

+

+ + China + + . The Ministry of Health confirmed two new human cases of H5N1 earlier this week, one of them being fatal, in Guizhou province of southwest China. A 21-year-old woman died after contracting the virus while the other victim, a 31-year old man, is in critical condition. According to the health officials, “no epidemiological connections have been found between the two cases." Health officials throughout China are on high alert as millions of people are traveling across the country in close-knit quarters to celebrate the Lunar New Year, increasing the risk of spreading infectious diseases. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_03_01.html b/data/flu-report-html/usgs_avian_flu_report_2013_03_01.html new file mode 100644 index 0000000..98cb634 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_03_01.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Mar 01, 2013 +

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+ News Update February 28, 2013 +

+
+

+ + H5N1 in Wild birds +
+ India +
+
+ . Government officials in the Indian state of Odisha are on high alert after a confirmed case of bird flu was detected in Chilka Lake earlier this week. It was not clear from the reports whether this was the detection of the highly pathogenic avian influenza (HPAI) H5N1 virus or some other avian influenza virus. Health officials are especially concerned as Chilka Lake borders the districts of Puri, Khordha, and Ganjam and is “one of the topmost winter homes for migratory birds in the country.” To help prevent further outbreaks, a rapid action team has been assembled and experts have collected additional blood samples from both migratory birds and chickens from farms in the affected districts and are awaiting test results. With warmer weather on the way and thousands of birds leaving the area daily, the State Fisheries and Animal Husbandry Department is hopeful that no further outbreaks will occur. +
+
+ + Nepal + + . Dr. Nar Bahadur Rajwar, Director of the Department of Livestock Service, has reported that the migration of birds from Siberia has resulted in the transmission of bird flu to domestic fowls in Nepal. There have been at least 11 HPAI H5N1 outbreaks in poultry since the beginning of 2013. It is unclear what was the basis of Dr. Rajwar‘s contention. +

+

+ + H5N1 in Humans +
+ Cambodia +
+ . The World Health Organization (WHO) confirmed two new cases of HPAI H5N1 in Cambodia, bringing the number of human deaths to eight and the total number of cases to nine since the start of the year. The most recent victims, a thirty-five-year-old man and a two-year-old boy, from the provinces of Kampot and Kampong Cham respectively, both died after contracting the deadly virus. None of the cases appear to be linked epidemiologically. +

+

+ These latest deaths have triggered Cambodia’s Prime Miniester Hun Sen to issue a “directive for police, agriculture, and health departments to join forces to combat the virus.” To hopefully prevent further outbreaks of this deadly virus, poultry farms and markets throughout the country will be disinfected and cross-border transportation will be stopped. Additionally, health officials are warning people to wash their hands regularly, keep children away from poultry, and to report dead poultry immediately. +

+

+ + China + + . China health officials confirmed a second case of HPAI H5N1 late last week, brining the country’s death total to two since the start of the year. The most recent victim, a 31-year-old-man from the Guizhou province of southwest China, died after coming in close contact with birds. All 110 people who were in contact with the two victims were quarantined and have now been released. A 21-year-old woman had also died of HPAI H5N1 in the same city on February 13. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_03_18.html b/data/flu-report-html/usgs_avian_flu_report_2013_03_18.html new file mode 100644 index 0000000..d84b9d2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_03_18.html @@ -0,0 +1,2053 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ National Wildlife Health Center +

+

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+ Avian Influenza Archive from Mar 18, 2013 +

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+ News Update March 14, 2013 +

+
+

+ + H5N1 in Poultry + +
+ + Australia + + . The Australian Department of Agriculture and Food confirmed earlier this week that a duck, which was part of a backyard flock of 71 ducks and chickens, was infected with low-pathogenic avian influenza in Perth, the capital of Western Australia, The duck has been sick, but while testing was being conducted, the flock was moved to a second location containing additional birds. The authorities believe that this outbreak poses no threat to humans, about 100 ducks and chickens at both affected areas were culled to help prevent further outbreaks. Additionally, authorities are monitoring the area and urging owners of backyard poultry to keep their birds away from wild birds, keep their backyards clean, and to alert their local vet if they encounter any sick or dead birds. +
+

+

+ + India + + . The Union health ministry confirmed earlier this week that two districts, Purnia and Madhepura, both in the Indian state of Bihar, have detected outbreaks of the highly pathogenic avian influenza (HPAI) H5N1 virus. This is the first time in 2013 that H5N1 has been detected in India. 338 chickens died at a government poultry farm in Purnea within a few days. In Madhepura, 800 chickens have died after coming in contact with the deadly virus. Throughout the state, precautionary steps including culling, border monitoring, and banning the sale of chicken and eggs, are all in place to help prevent further outbreaks. The Patna Zoo in Purnea has announced that it has increased the frequency of sanitation work to reduce the risk of possible introduction of the virus to the zoo’s collection of birds and animals. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_03_21.html b/data/flu-report-html/usgs_avian_flu_report_2013_03_21.html new file mode 100644 index 0000000..bd0e82f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_03_21.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Mar 21, 2013 +

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+ News Update March 21, 2013 +

+
+

+ + H5N1 in Poultry + +

+

+ + The Netherlands (LPAI) + + . The Dutch Ministry of Economic Affairs announced on March 19 that low-pathogenic bird flu was detected in sixty chickens on an organic poultry farm in Zeewold, Flevoland Province. The disease was confirmed by testing at the Central Veterinary Institute in Leystad. Though the virus is a mild H7N7 variant with no effect on human health, all 23,500 hens on the farm have been culled in accordance with European rules. This action will prevent the virus from spreading and mutating into a more deadly variant. On March 19 officials placed a ban on the transport of poultry, eggs, and poultry manure in a 1 km radius around Zeewolde. There are no other poultry farms within this area. Last week, an outbreak of low-pathogenic bird flu H7N7 was reported in Lochem. It is unknown at this time whether or not the outbreaks are related. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_04_08.html b/data/flu-report-html/usgs_avian_flu_report_2013_04_08.html new file mode 100644 index 0000000..c8b7599 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_04_08.html @@ -0,0 +1,2045 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Apr 08, 2013 +

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+ News Update April 5, 2013 +

+
+

+ + H5N1 in Humans +
+ China +
+
+ . On March 31st, health officials in China announced the news about three human cases of the H7N9 bird flu virus, including two deaths, in the city of Shanghai and the Anhui province. Over the subsequent days, as many as eight new cases, including three deaths, were reported in Shanghai, Jiangsu and Zhejiang provinces. Until this event, H7N9 had not previously been found in humans, making scientists worldwide question the seriousness of this new strain. The victims, ranging in age from 27 to 87, all showed initial symptoms of coughing and fever, which later progressed into pneumonia and breathing difficulties. It is not clear how the people became infected, as only two of the patients worked with poultry. Investigations of individuals with close contacts with the patients show no evidence of human to human transmission. While there is currently no H7N9 vaccine, the World Health Organization is working “to isolate and identify possible candidate viruses that could be used to make a future vaccine, if necessary.” Additionally, the Chinese Center for Disease Control and Prevention is sharing samples from their patients with scientists from around the world in hopes to learn more about the virus in general and to discover mutations that could make it even more dangerous. Kits capable of detecting the new H7N9 virus have also been distributed to the national influenza monitoring laboratories to enhance detection capability. The sequence of the H7N9 virus from the first three cases have been made public and sequence analysis show that the virus is entirely of avian origin and appears to be a reassortant between viruses in wild bird and domestic poultry. Moreover, the Ministry of Agriculture has announced detection of the virus from a pigeon at a food market in Shanghai, thus raising the possibility that other birds besides poultry could transmit the virus. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_04_12.html b/data/flu-report-html/usgs_avian_flu_report_2013_04_12.html new file mode 100644 index 0000000..0f1efea --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_04_12.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Apr 12, 2013 +

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+ News Update April 13, 2013 +

+
+

+ + H7N9 in Wild birds +
+ China +
+
+ . Chinese health officials announced that to help prevent further spread of the deadly H7N9 bird flu virus, scientists throughout China have increased the monitoring of bird migration paths. This decision comes as birds in southern China have started migrating north as winter nears. Bird experts from the Qinhuangdao Wildlife Conservation Center in the Hebei Province are collecting and testing bird feces on a daily basis in addition to warning local residents to stay away from any sick or dead birds and report any suspicious activity to authorities as soon as possible. +

+

+ University of Hong Kong microbiologist Professor Yuen Kwok-yung said in an interview in the journal Nature this week that he believes wild ducks and geese are already carrying the virus. 229 wild bird samples were collected from around Shanghai on April 2 and none were found to carry the H7N9 virus. This week, 100 parrots and doves being smuggled onto Taiwan were destroyed in hopes to prevent the virus from spreading from the mainland. +
+
+ + H5N1 in Wild Birds +
+ Vietnam +
+ . An outbreak of highly pathogenic avian influenza (HPAI) H5N1 has been reported in the city of Phan Rang-Tháp Chàm, in the Ninh Thuan province of Vietnam. Officials are reporting that between March 28 and April 11, nearly 5,000 swifts have died after contacting the H5N1 virus. Swift nests, made mostly of the birds’ saliva, are a prized ingredient for soup and other delicacies throughout the area. Officials are currently monitoring the situation. If confirmed this would be the first time that any swifts is infected with HPAI H5N1. +
+
+ + H5N1 in Poultry +
+ China +
+ . The World Animal Health Organization OIE reported earlier this week that the H7N9 virus has been detected in five markets throughout the eastern part of China, including markets in the Jiangsi, Anhui, and Zhejiang provinces, and in the city of Shanghai. To date, a total of 9 markets, including three in Shanghai have been affected with the virus. To help prevent the spread of further disease, Shanghai has banned the sale of all live poultry, 20,536 birds have been culled, and markets are being closed temporarily. +

+

+ + LPAI H7N1 in Poultry +
+ South Africa +
+ . The Western Cape ministry of agriculture confirmed an H7N1 outbreak has affected an ostrich farm in the town of Oudtshoorn earlier this week, leading to an “intensive epidemiological investigation” throughout the surrounding area. While scientists believe that this current outbreak has no connections to the deadly Chinese strain, they are performing tests to be certain. Additionally, movement restrictions have been put into place and people are advised to report dead and sick birds to the state veterinarian as soon as possible. +

+

+ + H7N9 in Humans +
+ China +
+ . As the number of H7N9 cases keep rising (to date, 43 cases have been confirmed and eleven people have died), authorities in the city of Shanghai and in the city of Hangzhou, the capital of eastern Zhejiang province, have banned the sale of live fowl, including chickens, pigeons, and quail, and have culled all poultry at markets where the virus has been detected. The virus, which has now been detected in chickens, ducks, pigeons and quail, is troubling scientists because, “in the past usually you would see chickens dying before any infections occurred in humans, but this time we’ve seen that many species of poultry actually have no apparent problems, so that makes it difficult because you lose this natural warning sign.” Health authorities around the country are on high alert and continue discussing ways to help prevent further spread of this deadly disease. +

+

+ + H5N1 in Humans +
+ Vietnam +
+ . Health officials in Vietnam confirmed that a four-year-old boy died of H5N1 on April 4, 2013, after coming in contact with an infected chicken near his home in the southern Dong Thap province. This is the country’s first human death from the deadly bird flu virus in more than one year and has no connection to the H7N9 strain that is affecting neighboring China. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_04_19.html b/data/flu-report-html/usgs_avian_flu_report_2013_04_19.html new file mode 100644 index 0000000..90efc31 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_04_19.html @@ -0,0 +1,2072 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update April 19, 2013 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . According to the Nepalese Department of Livestock Services, a total of 9 outbreaks of H5N1 have been confirmed in three zones throughout Nepal: Lumbini, Mechi, and Narayani. Out of 10,901 birds, 3,982 died while the remaining 6,919 were culled to prevent further spread of the virus. The source of these outbreaks remains unknown. Various control measures being applied include quarantine, movement control, screening, and disinfection of contaminated areas. +

+

+ + LPAI in Poultry +
+ UK +
+ . Officials from the Department for Environment, Food, and Rural Affairs (DEFRA) confirmed this week that a strain of bird flu was identified at a Bernard Matthews poultry farm in Suffolk, England. To help prevent the spread of further outbreaks, Bernard Matthews, a company best known for farming turkeys and producing turkey products, is closely monitoring and restricting movements in and out of the farm. Initial test results show that the strain is not H5 or H7, leading health officials to believe that the “strain is a low-risk to public health.” Experts said that the most plausible cause of the outbreak was through infected meat being imported from Hungary. The infected birds from the farm are being treated with antibiotics and the farm will most likely be up and running as normal within the next couple of days. +

+

+ + H5N1 in Humans +
+ Egypt +
+ . The Egyptian Health Ministry confirmed earlier this week that a 26-year-old man from the Dakahlia Governorate, located just north of the city Cairo, died of the H5N1 virus, bringing the number of human cases to three, including two deaths since the start of the year. The source of the outbreak remains unknown and the ministry is urging all citizens to consult their doctors immediately if they show any flu-like symptoms. +

+

+ + H7N9 in Poultry and Humans +
+ China +
+ . As of April 18, 2013, there have been 87 confirmed cases of H7N9 in four provinces (Anhui, Henan, Jiangsu, and Zhejiang) and two municipalities (Shanghai and Beijing) in eastern China, resulting in 17 deaths and many unanswered questions. Scientists still do not know how people get infected, as 40% of the people who have gotten sick did not come in close contact with birds. Additionally, scientists cannot pin-point what exactly is fueling this outbreak. It could be birds, other animals, human-to-human transmission, or even from contaminated dust at open markets. Uncovering where the virus comes from and how it spreads is the World Health Organizations (WHO’s) top priority. +

+

+ China also announced late this week that they are going to look into the possibility of human-to-human transmission by specifically looking at “family clusters” of people infected with the virus. They are currently studying a family of two brothers and their father who recently died of the virus and the two infected children from Beijing. Health officials are also continuing their research to see if the victims of H7N9 did or did not come in contact with poultry. As the mystery of this virus continues, the WHO said there was ‘no evidence of sustained human-to-human transmission, but a team of influenza experts have been invited to China to advise on the investigation. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_04_30.html b/data/flu-report-html/usgs_avian_flu_report_2013_04_30.html new file mode 100644 index 0000000..1774198 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_04_30.html @@ -0,0 +1,2083 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update April 30, 2013 +

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+ + H5N1 in Poultry +
+ Nepal +
+
+ . The Nepalese Central Veterinary Laboratory and the National Bird Disease Research Laboratory confirmed earlier this week that the highly pathogenic avian flu (H1N1) virus had been detected at two poultry farms in the Chitwan District and one farm in the Rupandehi District. The first farm in Godrang of Bharatpur, one of the largest in Chitwan, lost 30,000 out of 70,000 birds to the virus while an additional 11,289 were culled to prevent the disease from spreading further. The second infected farm in the nearby village Mangalpur, has culled 3,200 birds and destroyed chicken feed and eggs in hopes to stop the disease from spreading. Chitwan produces over 60% of the chickens for the country so officials are urging farmers to take necessary safety precautions. The H1N1 virus was also confirmed at a farm in the Rupandehi District, where over 300 birds were destroyed after the Centre Veterinary Laboratory in Kathmandu confirmed the virus. +

+

+ + LPAI H5N1 in Poultry +
+ Germany +
+ . Twenty confirmed cases of the low pathogenic H5N1 virus were reported by the World Animal Health Organization on two turkey farms near Badbergen, Lower Saxony, Germany, earlier this week. German authorities have culled over 25,000 birds at the two farms to prevent further outbreaks. +

+

+ + LPAI H7N9 in Poultry +
+ China +
+ . According to the China Animal Disease Control, a total of four outbreaks of the low pathogenic avian H7N9 influenza virus have been confirmed throughout China. At a farm in the Jiangsu province, there was one confirmed case and all 340 remaining birds were culled. Three outbreaks were also reported at open markets in the Henan and Zhejiang provinces. Two of the three infected birds were culled. In all four cases, the source of these outbreaks remains unknown and control measures being applied include screening, zoning, disinfection of contaminated areas, control of wildlife reservoirs, and movement control around the country. +
+
+ + H5N1 in Humans +
+ Bangladesh +
+ . Officials from the Institute of Epidemiology, Disease Control, and Research in Dhaka, Bangladesh, are confirming that a one-year-old boy died of H5N1 on February 18, 2013. Because the boy did not present with influenza-like or bird flu-like symptoms, throat and nasal samples were sent to the Center for Diseases Control in Atlanta, Georgia, and they confirmed the H151 virus on April 6th. This is the country’s first human death from the deadly virus and officials are urging people to cook their chicken thoroughly, wash their hands after coming in contact with chickens and eggs, and for farmers to be diligent in following safety precautions. +

+

+ + H7N9 in Humans +
+ Taiwan +
+ . Health officials in Taiwan confirmed on April 24, 2013, that a 53-year-old man has contracted H7N9, the new and dangerous strain of avian influenza. This is the first case of H7N9 outside of mainland China, where 108 cases and 22 deaths have been reported. The patient is extremely ill and is being treated in an isolation room. The 139 people who had contact with him are also being closely monitored. The patient, who frequently traveled between China and Taiwan, said he had not been exposed to poultry or uncooked poultry or eggs, making scientists wonder just how the virus is spread. +

+

+ Officials in neighboring countries remain on high alert now that the virus has left the mainland. Japan and Hong Kong are making sure their safety measures are up-to-date to ensure they will be ready if the virus spreads. +

+

+ While there are still many unknowns about the H7N9 virus, Nancy Cox, the director of the influenza division at Centers for Disease Control, reported that the number of “new cases in Shanghai has seen a dramatic slowdown”, and that “the reduction in frequency of new cases is very encouraging". +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_05_03.html b/data/flu-report-html/usgs_avian_flu_report_2013_05_03.html new file mode 100644 index 0000000..235878c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_05_03.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from May 03, 2013 +

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+ News Update May 3, 2013 +

+
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+ + H5N1 in Poultry + +

+

+ + Bangladesh + + . According to the Department of Livestock Services, Ministry of Fisheries and Livestock in Bangladesh, two outbreaks of H5N1 have been confirmed on two commercial poultry farms in the Districts of Dhaka and Rangpur. Out of 14,194 birds, 3,978 died while the remaining 10,216 were culled to prevent further spread of the virus. The source of these outbreaks remains unknown. Various control measures being applied include stamping out, movement control, and disinfection of contaminated areas. +

+

+ + Nepal + + . The Nepalese District Livestock Services Office confirmed earlier this week that four poultry farms around the country have been affected with the H5N1 avian influenza virus. In the Lalitpur and Chitwan Districts, in total, about 1,700 birds and 5 ducks were culled and chicken feed was destroyed to help prevent the disease from spreading further. +

+

+ Officials are keeping a close eye on the growing number of affected farms in the country due to the growing number of avian influenza cases occurring in the summer months. Historically, the virus was only seen in the winter months, but this year has started to survive in higher temperatures. Nepalese health officials continue to urge the public to take necessary safety precautions when cooking, eating, and coming in contact with poultry. +
+
+ + H7N9 in Humans + +
+

+

+ + China + + . Chinese authorities confirmed that between April 24th and May 1st, 19 people became infected with the H7N9 virus and a 55-year-old man died on mainland China, bringing the total of infected people up to 127. Of the 19 new cases, 16 originated the eastern provinces of Jiangsu, Zhejiang, Jiangxi, Fujian, and Shandong; while the other 3 were found in the central provinces of Hunan and Henan. To date, the H7N9 virus has killed 27 people in mainland China while an additional 26 have made a full recovery after being infected. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_05_13.html b/data/flu-report-html/usgs_avian_flu_report_2013_05_13.html new file mode 100644 index 0000000..5a9d1a1 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_05_13.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update May 9, 2013 +

+
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+ + H5N1 in Poultry +
+ China (LPAI H7N9) +
+
+ . The Ministry of Agriculture announced on May 9 that an environmental sample from a poultry market in Fujian Province tested positive for H7N9 bird flu. That brings the total number of samples that have tested positive for this strain of the virus to 52 in China. The ministry has ordered the local government to properly dispose of the sample and increase monitoring and prevention work. The virus has killed 33 people since it was first detected in Shanghai in March 2013. +
+ Three outbreaks of low pathogenic H7N9 bird flu began around April 4 in the Guangdong, Jiangxi, and Shandong Provinces. The outbreaks in Guangdong and Jiangxi were discovered in one chicken in each province, and the outbreak in Shandong was discovered in three environmental samples. None of the chickens had died from the disease, but 89,864 birds in Guangdong province were culled as a precautionary measure. Tests at the Harbin Veterinary Research Institute showed that the samples were positive for H7N9 bird flu. Measures applied so far include control of wildlife reservoirs, quarantine, movement control, screening, zoning, disinfection of infected premises, and dipping/spraying. There are plans to cull more birds to prevent the disease from spreading. The source of the outbreaks is unknown. +

+

+ + Mexico (HPAI H7N3) + + . According to a report from the OIE on May 8, five outbreaks of H7N3 bird flu in Jalisco, Guanajuato, and Puebla states have killed 40,019 birds and another 850,005 have been culled to prevent the spread of the disease. Two of the outbreaks were in Jalisco; one began on March 1 in a 16 bird backyard-flock and one began on April 29 at a commercial layer farm of 320,000 birds. Guanajuato had two outbreaks; one in a heavy breeder flock and one on a fattening farm. A total of 419,999 birds were culled on the two farms in Guanajuato. The most recent outbreak was in Puebla. It began on May 1 and was resolved on May 7 after 40,000 poultry had died from the virus and 110,000 were culled. In early April, Mexican authorities reported that recent H7N3 outbreaks had destroyed almost 4 million poultry and cost farmers about $32 million. +
+ The annual ANECA convention, the Mexican Association of Poultry Science Specialist, held at the end of April, discussed the rapid spread of H7N3 bird flu across central Mexico. One problem faced by authorities is that while OIE and Mexican officials report that the disease is contained within one area of the country, the industry believes that it has spread across the entire nation. During the meeting an official announced the outbreak in Puebla, an outbreak that confirms the expansion of the disease beyond central Mexico, though several areas in between have not had official reports of the disease. In late April the virus was reported in backyard-flocks the state of Tlaxcala, a halfway point between the Jalisco and Puebla outbreaks. Problems that may have contributed to the spread of the disease include lack of action by the government and poor industry practices (lack of biosecurity, sale of untreated poultry litter to other farms, sale of live spent hens, and a high number of live sales). Currently vaccination is the only control strategy, but the efficacy of the vaccine is being questioned. +

+

+ + H5N1 in Humans +
+ China (LPAI H7N9) +
+ . On May 8, the National Health and Family Planning Commission notified WHO of an additional laboratory-confirmed case of human infection with bird flu. The patient, a 79-year-old woman from Jiangxi province, became ill on May 3. There have been a total of 131 laboratory-confirmed cases of human infection with H7N9 bird flu to date. People who had been in contact with the confirmed cases are being closely monitored. Authorities in affected locations continue to implement prevention and control measures and research into the possible sources of infection and reservoirs of the virus are underway. So far, there is no evidence of sustained human-to-human transmission of the virus. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_05_23.html b/data/flu-report-html/usgs_avian_flu_report_2013_05_23.html new file mode 100644 index 0000000..f18007f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_05_23.html @@ -0,0 +1,2094 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update May 16, 2013 +

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+ + HPAI H7N3 in Poultry + +

+

+ + Mexico + + . Mexican authorities confirmed an outbreak of H7N3 at a farm in the town of Palmar de Bravo, in the state of Puebla, earlier this week. After samples came back positive for the deadly virus, 55,000 birds at the infected farm were culled to prevent the disease from spreading further. Additionally, The Secretariat of Agriculture, Livestock, Rural Development, Fisheries and Food (SAGARPA) are collecting samples from farms throughout the state, distributing millions of doses of vaccines, and monitoring movement control. +

+

+ + H5N1 in Poultry + +

+

+ + Nepal + + . Officials from the Directorate of Animal Health (DoAH) confirmed three total outbreaks of H5N1 in the Kathmandu and Kaski Districts of Nepal. In the capital district of Kathmandu, about 1,665 birds were culled to prevent further spread of the disease. Additionally, in the Kaski District, 555 chickens and their feed were destroyed after a farm tested positive for the virus. Officials are monitoring poultry coming in and out of the country and are testing any suspicious looking birds. Officials are urging farmers to take proper care of their birds and to contact their vet immediately if they have any suspicions. +

+

+ + North Korea + + . The North Korean Director of the Veterinary and, Ministry of Agriculture, Anti-Epizootic Department, confirmed an outbreak of H5N1 at a duck factory in Pyongyang. After a cage of ducks showed signs of being infected back in April, and mortality continuing throughout the month, samples were sent to the lab and came back positive last week. All 16, 400 susceptible ducks, including more than 2,000 adult ducks, 42,000 fattening ducks and 120,000 ducklings younger than 20 days, were dead or killed. Control measures being applied include stamping out, screening, movement control throughout the country, and disinfection of contaminated areas. +

+

+ + Tibet + + . The National Avian Influenza Reference Laboratory on Monday confirmed an outbreak of H5N1 on a farm in Linzhi, located in southwestern China's Tibet Autonomous Region. Of the 407 birds, including chicken and geese, 35 died while the remaining 372 were culled to prevent the disease from spreading. Control measures being applied include stamping out, movement control around the country, screening and zoning, and disinfection of infected areas. +

+

+ + Germany + + . German officials confirmed a recent outbreak of the low pathogenic H7N7 bird flu virus in the Vechta district of Lower Saxony, Germany. In total, 10 cases were reported and all 13,000 susceptible birds were destroyed to prevent the disease from spreading further. The source of the outbreak remains unknown and control measures being applied include stamping out, zoning, and disinfection of contaminated areas. +

+

+ + H5N1 in Humans + +

+

+ + China (LPAI H7N9) + + . On May 13, Xinhua reported that 3 more people had died from the new strain of H7N9 bird flu in China. This brings the total number of deaths from the disease to 35 and the total number of infections to 130. The report did not give details about the deaths, but did state that a new case of H7N9 had been found in east Jiangxi province. +

+

+ + Nature's map of the H7N9 bird flu outbreaks + + was updated on May 14 to show the geographical expansion of the virus in mainland China in late April. The author, Declan Butler, noted that there was a lull in cases in early May and hypothesized that the drop in cases might reflect the success of control measures such as the closure of live bird markets, though he cautioned that it was possible the epidemic would resurface later. This update was likely written before the information reported by Xinhua on May 13 came out and does not include the 3 recent deaths. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_05_24.html b/data/flu-report-html/usgs_avian_flu_report_2013_05_24.html new file mode 100644 index 0000000..48818e8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_05_24.html @@ -0,0 +1,2057 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update May 24, 2013 +

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+ + H5N1 in Poultry +
+ China (H7N9) +
+
+ . An article published in Science Magazine on May 10, “Don’t Cull Wild Birds Yet,” cautions officials not to rush to cull wild birds. The article notes that the disease seems to require close contact for transmission to humans and that there has only been one case of H7N9 found in a wild bird despite collection of fecal samples from many wild birds. The authors are concerned that because the public lacks awareness that people are unlikely to catch the disease from wild birds, they will call for the culling of wild species, as they did during the outbreak of H5N1 in 2004. The H5N1 outbreak led to many ill-informed attempts to cull wild birds or wipe out habitats in attempts to prevent the disease from spreading. However, culling wild birds does not effectively contain the disease and habitat loss might even stress the birds, making them more vulnerable to the disease and more likely to spread it. Furthermore, loss of habitat can cause birds to fly to new localities, potentially spreading the disease to domesticated birds in those areas. The authors suggest that it is more feasible to combat the disease by minimizing interactions between domestic and wild bird populations. This can be done by isolating poultry and halting the trade of wild birds. +

+

+ The ministry of agriculture announced on May 14 that they will strengthen and improve monitoring of poultry farms nationwide. They plan to increase the frequency of tests for H7 subtype bird flu, improve supervision of epidemic control measures at farms and poultry markets, heighten supervision of quarantine during breed transportation, and fund research on the prevention and control of the H7N9 bird flu. A researcher at the national laboratory reported that scientists are developing a vaccine against the H7N9 virus and said, “Next we will have to identify the source and transmission route of the virus, as well as its pathogenicity and ability to spread in animal models.” Some scientists believe that the virus may have been spread by migratory birds, as an article, “Origin and diversity of novel avian influenza A H7N9 viruses causing human infection: phylogenetic, structural, and coalescent analyses,” published in the Lancet suggests. However, as Dr. Wang Xiaodu has noted, it would require more evidence to prove that migratory birds were the source of the outbreak. In Hebei Province, the local government recently set up 17 monitoring stations in two wetlands to capture birds and test them for H7N9 bird flu. +

+

+ A study released on May 18 suggests that poultry farms could be the source of H7N9 bird flu. The World Health Organisation (WHO) and the central government of China collaborated on the study that was compiled after a week-long field assessment of the H7N9 bird flu by a panel of experts. The report stated that H7N9 had a higher potential for human-to-human transmission than any other known bird flu virus, but added that there was no evidence to show that such transmission has already taken place. Apart from three family clusters of virus outbreaks, the remaining cases of H7N9 bird flu have been sporadic. It said H7N9 infected more patients in a shorter time than other bird-flu viruses, and genetic alterations in some samples mean that the organism has adapted to be more contagious than other bird flu viruses. Scientists found that 72% of cases were exposed to the disease through poultry or at poultry markets. According to the report, “Although the virus was not found in poultry farms yet, they are likely the source of the virus, which spread further in the live-poultry markets and eventually infected humans." The WHO offered several suggestions, including staying alert despite the seasonal weakening of bird flu viruses in the summer. +

+

+ A poultry sample from Guangdong Province in south China tested positive for H7N9 bird flu according to an announcement on May 20 by the agriculture authority. The sample came from a poultry market and was tested by the national avian flu reference laboratory, which found that the sample was closely related to a sample from a pigeon tested on April 4. The ministry has ordered Guangdong to properly dispose of the sample and increase monitoring efforts. +

+

+ An article published online in Science Magazine on May 23, “Infectivity, Transmission, and Pathology of Human H7N9 Influenza in Ferrets and Pigs,” reports that H7N9 bird flu is contagious among ferrets, whose respiratory systems are similar to those of humans. The study found that the new bird flu virus is easily passed between ferrets sharing the same cage. However, they also found that the H7N9 virus does not travel well through airborne secretions such as sneezing and coughing. Instead the virus requires direct, intimate contact for infection. The same article reports that pigs, which often serve as incubators of flu strains, can be infected with the H7N9 bird flu virus, but don't pass the disease easily either through direct contact with other pigs or through airborne secretions. This information makes sense with the way that the disease has spread in China; most human cases have gotten the virus from contact with poultry or live poultry markets and only a few may have gotten it through contact with family members. There is no evidence that anyone has been infected by breathing the same air as an infected person. This article was produced by collaborators in China and North America. Recent data from other scientists suggests that the virus could mutate into a more easily transmitted disease. Several Chinese scientists found small mutations in the hemagglutinin of two H7N9 viruses from Nanjing. "These findings suggest that the novel virus had been evolving and might, with a few amino acid mutations, adapt to humans," say the authors of a letter published in the New England Journal of Medicine. Webby, one of the authors of the article on the transmissivity of the virus between ferrets, says that the H7N9 viruses analyzed so far have receptors that allow them to latch onto cells in both birds and humans, but the virus would have to lose its avian gene sequences in order to transmit efficiently between humans. It is not clear how far along in this process the virus is, but the mutations found in the Nanjing samples suggest that it is adapting. The potential for the virus to mutate and cause a bird flu pandemic increases the urgency for officials to take action to keep the H7N9 bird flu virus from becoming entrenched in poultry populations. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_05_30.html b/data/flu-report-html/usgs_avian_flu_report_2013_05_30.html new file mode 100644 index 0000000..074f5ee --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_05_30.html @@ -0,0 +1,2099 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + H7N9 in Poultry + +

+

+ + China + + . Scientists at Fudan University in Shanghai claimed earlier this week that they believe the new H7N9 bird flu virus originated from poultry or wild birds in eastern China. Genetic research, analysis through bioinformatics, and gene sequencing lead them to discover “that the NA (neuraminidase) of the N9 subtype had its origins in Baikal Teal in Hongze Lake in Jiangsu Province.” Prior to this announcement, the theory was that the NA proteins from the virus came from wild birds in South Korea. +

+

+ To date, there have been 131 human cases of the H7N9 virus reported in China and 36 deaths. +

+

+ + LPAI H7N1 in Poultry + +

+

+ + Spain + + . Spanish officials confirmed an outbreak of the low pathogenic H7N1 bird flu virus at a hen farm in Gimenells i el Pla de la Font, a municipality in Segrià, Catalonia, Spain, earlier this week. Of the 12,358 hens, 133 died while 12,225 were culled to prevent the disease from spreading further. The source of the outbreak remains unknown and control measures being applied including stamping out, movement control, and disinfection of contaminated areas. +

+

+ + H7N9 in Mammals + +

+

+ Researchers in China and North America completed their initial assessments of how quickly the H7N9 virus can spread between ferrets and pigs. They discovered the new bird flu virus passes easily between ferrets sharing the same cage by direct contact, which is troublesome; but, they also found that it does not travel well through airborne secretions such as coughing and sneezing. The results were similar with pigs. Infected pigs did not spread the virus easily, either through direct contact or through airborne secretions. +

+

+ And while this data offers scientists a little hope, other recent data does the opposite. Scientists in China recently found tiny mutations on two H7N9 viruses which suggest that the virus might be evolving. Dr. Richard Webby, an influenza expert at St. Jude Children’s Research Hospital said that it is of the utmost importance to try to get this virus out of the animal populations. "On a scale from 1 to 10 — from an avian virus with no potential to infect humans to a fully human-adapted strain — we don't know exactly where this H7N9 is," Webby says. "But I think we can safely say from these data that it might be closer to 10 than the avian viruses we've seen infecting humans in the last decade." +

+

+ + H7N9 in Humans - Updates + +

+

+ + Beijing + + . Health authorities in Beijing confirmed earlier this week the second H7N9 human infection of the year in the Municipality. The victim, a six-year old boy from the Haidian district, presented to the hospital with a fever and a headache and was confirmed to have the virus on Tuesday. After two days of observation, his temperature returned back to normal and he was back at school the following day. The boy continues to be in good health. +

+

+ + China + + . Researchers in China announced earlier this week that after analyzing blood samples collected from poultry workers in 2012, there is “no evidence to suggest mild or asymptomatic human infections” of the H7N9 virus occurring prior to the present outbreak. Scientists from the Chinese Center for Disease Control and Prevention tested poultry farmers who worked in eastern China, where the majority of this year’s H7N9 cases have been reported, including the city of Shanghai and the provinces of Zhejiang, Jiangsu, and Anhui. The researchers concluded that “although no evidence of human H7N9 infection was found in the poultry workers before November 2012, it's possible that transmission from poultry to humans was occurring in other populations.” +

+

+ + China + + . Chinese scientists announced earlier this week that the H7N9 bird flu virus may be resistant to the flu drug oseltamivir, commonly called Tamiflu. Scientists report that three of the 14 patients infected with the virus that were being treated in a Shanghai hospital tested positive for resistance to the flu drug. It is important to note, however, that the three patients who were resistant were the most ill, and two later died while the third is still in critical condition. Additionally, all three of the patients resistant to Tamiflu carried a mutation that is often seen in other patients that are resistant to the drug. +

+

+ This new development is worrisome, said the team of scientists. "The apparent ease with which antiviral resistance emerges in A/H7N9 [flu] viruses is concerning; it needs to be closely monitored and considered in future pandemic response plans.” +

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+ China +
+
+ . Fear of another outbreak of the H7N9 bird flu virus was heightened after two wild geese were found dead at the Shanghai Zoo earlier this week; however, officials confirmed that the two birds actually died of intestinal inflammation and hepatitis. To date, 33 H7N9 cases and 15 deaths have been confirmed in Shanghai to bring the total to 132 cases with 38 deaths. The most recent victim, a 59-year-old man, died on May 31st after being diagnosed at the beginning of April. +

+

+ + LPAI H7 in Poultry +
+ Denmark +
+ . The Danish Veterinary and Food Administration confirmed an outbreak of low pathogenic avian influenza H7 on May 31st on a mallard and pheasant farm in Viborg, a city in central Jutland, Denmark. Because the birds are separated epidemiologically, the 1,400 infected mallards will be culled as soon as possible while the remaining 12,500 pheasants will be closely monitored and tested for the virus. Additionally, a restricted zone has been established around the farm in the hope that the disease will be prevented from spreading. +

+

+ + The Netherlands + + . The Dutch Economic Affairs Ministry confirmed an outbreak of LPAI H7N1 on a farm in Leusden, in the Province of Utrecht, earlier this week. To prevent the disease from spreading further, all 11,000 free-range chickens at the infected farm will be culled. Additionally, nearby farms are being tested for the virus and a ban on the transport of poultry, eggs, and other farm products has been initiated. +

+

+ + H7N9 News Updates + +
+ Research from the U.S. Department of Agriculture’s Southeast Poultry Research Laboratory in Athens, Georgia, shows that chickens and quail are highly susceptible to the H7N9 bird flu virus, and once they catch it, they shed it at high volumes. The reason for this, the scientists believe, is because rather than shedding the flu virus via the cloaca, chickens and quails shed the virus from their nasal passages. Additionally, scientists found that pigeons, ducks, and geese do not shed the virus “to any significant degree;” rather, it’s the chickens and the quail that allow the virus to grow and spread. Dr. David Dwayne, director of the laboratory, said that this research reveals that chickens and quails played a major role in the spread of H7N9 throughout China, and that “when they become infected, they put a lot of virus into the environment.” While the number of confirmed H7N9 cases has decreased dramatically since the beginning of May, scientists remain on high alert and continue to try to find answers about this dangerous virus. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_06_17.html b/data/flu-report-html/usgs_avian_flu_report_2013_06_17.html new file mode 100644 index 0000000..ca9e126 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_06_17.html @@ -0,0 +1,2053 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 17, 2013 +

+
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+ News Update June 14, 2013 +

+
+

+ + H5N1 in Wild birds +
+ Austria +
+
+ . Austrian authorities had to cull dozens of rare birds that had been smuggled into Europe by a Czech couple from Bali, Indonesia, after it was discovered that one of the dead birds contained the H5N1 virus. In total, the couple smuggled 60 birds, including wild parrots, birds of paradise, and other exotic species, into the country in suitcases. Thirty-nine birds died while being transported, while the remaining 21 were culled to prevent the disease from spreading further. The couple will be prosecuted and Austrian border guards reported that everyone who had come in contact with the birds had been treated and had shown no flu-like symptoms. +

+

+ + HPAI H7N3 in Poultry +
+ Mexico +
+ . Officials from the Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalimentaria (SENASICA) reported that over the past month, eight H7N3 outbreaks have been confirmed in four Mexican states: Jalisco, Puebla, Guanajuato, and Aguascalientes. In total, the affected poultry farms, including two commercial layer farms, two heavy breeder flocks, three broiler flocks, and a backyard farm, have culled 815,034 birds. The remaining 296,054 birds are being closely monitored and vaccinated to prevent the disease from spreading further. Additional control measures being applied include movement control, screening and zoning, and disinfection of contaminated areas. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_06_21.html b/data/flu-report-html/usgs_avian_flu_report_2013_06_21.html new file mode 100644 index 0000000..6e56eab --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_06_21.html @@ -0,0 +1,2069 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jun 21, 2013 +

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+ News Update June 21, 2013 +

+
+

+ + Avian Influenza in Wild birds +
+ Netherlands +
+
+ . Dutch scientists at Wageningen University successfully sequenced the genome of the mallard, which, according to the research team, will “provide good leads for further research into exactly how this virus (influenza A) affects birds, and in the long-term, also humans.” Humans and mallards share some of the same infection-fighting defense mechanisms, and studying the differences between how mallards and humans fight off infections, specifically influenza, will help scientists “find ways of controlling the infection process with medication in humans.” +

+

+ + Avian Influenza in Poultry +
+ USA +
+ . The Arkansas Livestock and Poultry Commission confirmed that chickens have tested positive for low pathogenic H7N7 earlier this week. In response to the outbreak, officials have placed a quarantine on poultry within a 6.2 mile radius of the infected farm. While the source of the outbreak remains unknown, officials believe that recent flooding may have contaminated the water, putting poultry at risk for contracting the bird flu virus. +

+

+ + H7N7 in Poultry +
+ Africa +
+ . The deputy director for animal health in the Western Cape department of agriculture confirmed six outbreaks of the low-pathogenic H7N7 virus at ostrich farms near the town of Oudtshoorn this week. The farms have been quarantined to prevent the disease from spreading further. Additionally, officials are urging farmers to enforce biosecurity measures including separating ostriches from all other birds, keeping ostriches away from open pans and swampy areas, and keeping their water clean and fresh. +

+

+ + Avian Influenza in Humans (H6N1) +
+ Taiwan +
+ . Taiwan’s disease control authority confirmed its first human infection of H6N1 on Friday, the 21st of June. The victim, a 20-year-old woman from central Taiwan, was initially diagnosed with pneumonia, with tests later showing that the virus was low pathogenic H6N1. The woman has already made a full recovery, and of the 36 people she had close contact with, four showed flu-like symptoms, but none of them tested positive for the virus. The source of the outbreak remains unknown, the patient has not traveled out of the country and did not have a history of poultry exposure. Officials are urging people to avoid feeding and touching live birds and to stay away from open markets with live poultry. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_06_28.html b/data/flu-report-html/usgs_avian_flu_report_2013_06_28.html new file mode 100644 index 0000000..42b21a3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_06_28.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jun 28, 2013 +

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+ News Update June 28, 2013 +

+
+

+ + H7N7 in Poultry + +

+

+ + Germany + + . German officials confirmed an outbreak of low pathogenic avian influenza H7N7 on a farm in Emsland in Lower Saxony, Germany, earlier this week. Of the flock of 13,406, there were 400 birds that tested positive with the virus. All birds at the farm were destroyed to prevent the disease from spreading further. The source of the outbreak remains unknown and control measures being applied include stamping out, zoning, and disinfection of contaminated areas. +

+

+ + H7N9 in Humans + +

+

+ + China + + . The Shanghai Health and Family Planning Commission confirmed on June 27, 2013, that a 56-year-old man from Shanghai, died of the H7N9 virus, bringing the number of human deaths to 16 since the start of the year. The victim’s wife also died of the virus on April 3, 2013, but health officials “said there is no clear evidence to show human-to-human infection between the couple since they may have been exposed to the same source of infection.” +

+

+ Due to the high number of H7N9 cases in Shanghai this year, the city enacted a citywide emergency response at the start of April, but recently downgraded their emergency stratus on May 9 after no new cases were reported for almost three weeks. At this time, there are no plans to institute heightened monitoring. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_07_05.html b/data/flu-report-html/usgs_avian_flu_report_2013_07_05.html new file mode 100644 index 0000000..348f871 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_07_05.html @@ -0,0 +1,2071 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 05, 2013 +

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+ News Update July 5, 2013 +

+
+

+ + H5N1 in Poultry + +

+

+ + Indonesia + + . A rapid response team of the District Veterinary Office (DVO), Kathmandu culled all the remaining chickens at a poultry farm in Kathmandu on July 1 after it was confirmed that they were infected with H5N1 bird flu virus. The farm housed 2,000 chickens, out of which, about 600 died from the disease and 1,400 were culled. The owner took some dead chickens to the DVO after they started dying. The Central Animal Health Laboratory confirmed the virus on July 1. "After the laboratory gave positive report, we immediately deployed rapid response team to destroy the chickens in the tainted farm," said Bhola Raj Acharya, chief of Kathmandu DVO. The team will also dispose of chicken feed, eggs and droppings, and disinfect the farm. Officials encourage all poultry farmers and members of the public to take proper care of chickens, inform veterinary officials if chickens are displaying suspicious behavior, cook chicken properly before eating, and wash their hands properly with soap after touching chicken. +

+

+ + Nepal + + . One outbreak of bird flu began on May 28 in Giriraj birds raised in a household in Naranyi Province and two outbreaks have begun in Lumbini Province, one on June 2 in backyard ducks and one in broiler chickens on June 7. A total of 1,675 susceptible birds were housed in the various locations, 410 birds came down with H5N1 birds and died, and 1,165 birds were culled to prevent the spread of the disease. The cause of the outbreaks is unknown, but the premises have been disinfected and surveillance activities are ongoing throughout the country. All of the outbreaks were resolved as of June 14. +

+

+ + H5N1 in Humans + +

+

+ + Cambodia (H5N1) + + . A joint statement by the World Health Organization and the Cambodian Health Ministry on July 2 reported that a six-year-old girl from Southwestern Kampot province had died from H5N1 bird flu. Tests by the Institut Pasteur du Cambodge confirmed on June 28 that the patient was positive for H5N1 bird flu. She had developed a fever and headache on June 24 and her condition worsened with cough and dyspnea. The girl was first taken to a private clinic and was moved to Kantha Bopha Hospital on June 28. At the hospital she was treated with Tamiflu, but she died later that night. There have been recent poultry deaths in her village and it is likely that she was exposed to sick and dead poultry. "Avian influenza H5N1 remains a serious threat to the health of all Cambodians. This is the 13th case of H5N1 infection in humans this year," Health Minister Mam Bunheng said in the statement. He added, "I urge parents and guardians to keep children away from sick or dead poultry and prevent them from playing with chickens and ducks. Parents and guardians must also make sure children wash their hands with soap and water after any contact with poultry." Of the 13 cases in Cambodia this year, only four people have survived. +

+

+ + Canada (H7) + + . The Public Health Agency of Canada reported that an American man at an Edmonton hospital tested positive for H7 bird flu virus. According to Canada's acting chief public health officer, the man is not currently ill from the flu and is not contagious. Dr. Gregory Taylor says that the event is a reminder that viruses like the new H7N9 bird flu are only a plane ride away. The blood test that was used to diagnose the previous infection could not determine the neuraminadase (N) component of the virus, but the specialist who treated him in Edmonton was on the lookout for H7N9 bird flu. In China, 132 people have been infected by H7N9 bird flu this spring and at least 39 have died from the disease. The patient had travelled to China in late May, though not a part of the country that has any recorded infections with H7N9 flu. He had also travelled to Singapore and India in recent weeks. The patient first became ill in India and spent time in an intensive care unit there, though it is not known what illness led to this hospitalization. After being released from the hospital in India, he travelled to the United Arab Emirates and boarded a flight to San Francisco. He became ill on the plane and lost consciousness, perhaps from a diabetic coma. The flight was diverted to Edmonton where quarantine officers determined that his symptoms did not indicate active influenza. Once he was in the hospital in Edmonton, he developed pneumonia and doctors ordered a battery of tests. These tests were negative for active viral infection, but turned up evidence of a past infection with H7 flu. The Canadian Public Health Agency has sent samples from the man to the U.S. Centers for Disease Control in Atlanta, which has not been able to confirm the presence of the antibody to H7 influenza. The case is now listed as a “suspect positive” according to the Canadian Public Health Agency as both organizations investigate this case further. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_07_15.html b/data/flu-report-html/usgs_avian_flu_report_2013_07_15.html new file mode 100644 index 0000000..ab26ad9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_07_15.html @@ -0,0 +1,2060 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 15, 2013 +

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+ News Update July 15, 2013 +

+
+

+ + H5N1 in Poultry +
+ Nepal +
+
+ . Officials from the Nepalese Department of Livestock Services confirmed three outbreaks of the highly pathogenic H5N1 avian influenza virus earlier this week. In the Narayani and Lumbini Zones, out of 1,675 birds, 410 died while 1,165 were destroyed to prevent further spread of the virus. The source of these outbreaks remains unknown. Various control measures being applied include stamping out, movement control, quarantine, and disinfection of contaminated areas. +

+

+ + H7N7 in Poultry +
+ South Africa +
+ . Officials from the Department of Agriculture, Forestry and Fisheries recently reported three outbreaks of low pathogenic H7N7 on commercial ostrich farms in Oudtshoorn and George in the Western Cape Province of South Africa. Out of 9,047 birds, 3,012 were confirmed to have been infected with the virus. Various control measures being applied include quarantine, movement control, and screening. +

+

+ + H5N1 Research + +
+ A recent article, "Isolation and characterization of two H5N1 influenza viruses from swine in Jiangsu Province of China," published in Archives of Virology, investigates whether or not the H5N1 virus has ever been transmitted to pigs. Scientists in the Jiangsu province of eastern China collected a total of 1,107 nasal swab samples from healthy pigs from 2008-2009. From these samples, two H5N1 viruses were isolated and identified. One of the viruses was moderately pathogenic to mice while the other virus had limited ability to replicate, leading scientists to conclude that “pigs are naturally infected with avian H5N1” and that the virus has “the potential threat to public health due to adaption or reassortment of H5N1 virus in this species.” +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_07_18.html b/data/flu-report-html/usgs_avian_flu_report_2013_07_18.html new file mode 100644 index 0000000..5669271 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_07_18.html @@ -0,0 +1,2053 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 18, 2013 +

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+ News Update July 18, 2013 +

+
+

+ + Avian Influenza in Wild birds +
+ India +
+
+ . In Cubbon Park, in the Indian state of Karnataka, officials recently placed a sign reading ‘Feeding pigeon leads to bird flu disease; please avoid feeding pigeons. Warning: fine Rs 100.’ While there is currently no scientific evidence that links feeding pigeons to the contraction of H5N1, officials hoped the sign would prevent people from standing on the side of the road to feed the birds. According to Dr. Sudharshan Ballal, medical director at the Manipal Hospital and a specialist in H1N1, by and large feeding pigeons does not lead to bird flu. "Some of the birds’ excreta may contain the virus and, in a crowd, the infection could spread. But people don’t catch bird flu just by feeding pigeons. There is no need to get alarmed." +

+

+ + Avian Influenza in Humans +
+ Cambodia +
+ . The World Health Organization and Cambodian Health Ministry confirmed earlier this week that a three-year-old boy from Cambodia’s eastern Prey Veng province died of H5N1, bringing the number of human deaths to five and total human cases to 14. The source of the outbreak remains unknown, however, the boy’s doctors believe that exposure to the virus most likely came from coming in contact with sick or dead poultry from the village. Health officials are urging parents to keep their children away from sick or dead birds and to wash their hands often. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_08_12.html b/data/flu-report-html/usgs_avian_flu_report_2013_08_12.html new file mode 100644 index 0000000..5c1a987 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_08_12.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Aug 12, 2013 +

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+ News Update August 8, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + The Netherlands (H7) + +
+ The Dutch Ministry of Affairs confirmed an outbreak of H7 earlier this week on a poultry farm in the Friesland province of The Netherlands. All 9,043 chickens were destroyed to prevent the disease from spreading further. The source of the outbreak remains unknown, but the Dutch Ministry believes that “it’s probably a mild H7 version of the bird flu virus” which is not dangerous to humans. Control measures being applied include stamping out, zoning, and disinfection of contaminated areas. Additionally, a transport ban has been placed on poultry, eggs, and poultry manure around the infected farm. +
+

+

+ + India (H5N1) + +
+ Health Officials in India have issued an alert after two outbreaks of H5N1 were reported in the Indian state of Chhattisgarh. Of the 8,442 birds, 2,856 died after contracting the virus. Preventative measures being applied include stamping out, movement control, screening, and dipping and spraying. Furthermore, areas near the poultry farms are being monitored and sanitized to prevent the disease from spreading further. +

+

+ + Nepal (H5N1) + +
+ Nepalese health officials confirmed six new outbreaks of H5N1 earlier this week, raising the total number of outbreaks to 32 in the past 21 days. During this three week stretch, health officials have culled over 220,000 chickens and destroyed more than 400,000 eggs at the 30 affected farms in the Kathmandu, Bhaktapur and Lalitpur districts. In hopes to prevent the disease from spreading to both humans and other poultry, officials have imposed a week-long ban on the distribution and sale of chickens throughout Nepal. The head of the Kathmandu District Animal Health Office hopes that this measure will “save both human lives as well as the industry.” +

+

+ + Taiwan (H5N2) + +
+ Taiwanese officials recently confirmed an outbreak of H5N2 on a duck farm located in Hualien County. Out of 11,672 birds, 20 cases were confirmed. Preventative measures applied included stamping out, quarantine, movement control, screening, zoning, disinfection of premises, and no vaccination or treatment of affected animals. The status of this outbreak is considered ongoing. +

+

+ + Taiwan (H5N3) (This is an adjacent farm) + +
+ Taiwanese officials recently reported one outbreak of H5N3 on a duck farm located in Hualien County. This farm is located near the H5N2-affected premise. Out of 13,400 birds, 20 cases were confirmed. Preventative measures applied included quarantine, movement control, screening, disinfection of premises, and no vaccination or treatment of affected animals. The status of this outbreak is considered ongoing. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + +
+ Chinese scientists have confirmed based on recent evidence that H7N9 can be spread via person to person. The virus has been linked to 132 cases and 37 deaths in China and Taiwan from March to May of this past year. Scientists specifically investigated a case in eastern China where the virus was likely to have spread from a father to his daughter. The father contracted the virus, and was cared for by his daughter, who eventually fell sick and died one month later. The nearly identical H7N9 virus was isolated from both patients. Scientists noted several specific challenges related to the virus, including its ability to go undetected in birds before its transmittal to humans. In response to the outbreak, Chinese authorities applied several control measures to stop its spread, including suspending live markets across the country. With the exception of one single reported case last month, the control measures have been effective in stopping the virus. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_08_19.html b/data/flu-report-html/usgs_avian_flu_report_2013_08_19.html new file mode 100644 index 0000000..5007459 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_08_19.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Aug 19, 2013 +

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+ News Update August 19, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Nepal (H5N1) + +
+ The Bhaktapur District Livestock Office confirmed five new cases of H5N1 earlier this week, raising the total number of outbreaks to 36 in the past four weeks. A rapid response team culled 3,905 chickens and destroyed 1,566 eggs and 100 kg of chicken feed at the infected farms. Officials remain on high alert and continue to test farms throughout the area in hopes to prevent the disease from spreading to more farms in the district. +
+

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (H5N1) + +
+ The World Health Organization and the Cambodian Health Ministry confirmed two new human cases of H5N1 earlier this week. The latest victims, a nine-year-old boy from the Battambang province, and a five-year-old girl from the Kandal province, both had contact with sick or dead poultry before becoming ill. The Cambodian Health Minister is urging parents and guardians to keep their children away from sick or dead poultry and to wash their hands frequently as they are at a very high risk of contracting the virus. This year, there have been 16 cases of H5N1 in Cambodia alone, 11 resulting in death. +

+

+ + China (H7N9) + +
+ Chinese Health officials reported earlier this week that a 51-year-old woman tested positive for the H7N9 virus. The woman, from the Guangdong province, was a poultry slaughtering worker in a local market for many years, and is in critical condition. None of the 36 people who have had close contact with the victim are showing flu-like symptoms. In hopes to prevent the disease from spreading, the Guangdong Provincial Agricultural Department distributed five tons of disinfectant across the province. To date, 133 people in Mainland China have contracted the H7N9 virus, with 43 cases resulting in death. +

+
+

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_08_23.html b/data/flu-report-html/usgs_avian_flu_report_2013_08_23.html new file mode 100644 index 0000000..42d6fb6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_08_23.html @@ -0,0 +1,2074 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 23, 2013 +

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+ News Update August 23, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Nepal (H5N1) + + The government declared the district of Bhaktapur a bird flu emergency zone on August 14, and the Ministry of Agricultural Development decided to pursue a blanket culling of chickens in that district. On August 15 teams destroyed 53,308 chickens, 181,526 eggs, and 4,363 kilograms of feed. On August 16 the Bhaktapur Directorate of Animal Health reported the mobilization of ten teams of ten workers each, which culled thousands more chickens and ducks that day. The Directorate plans to destroy in seven to ten days all poultry, manure, chicken feeds, and other poultry-related products in the district. The government has banned the import and export of poultry products into and out of Bhaktapur, and all poultry farms in the district will be sealed for the next three months. +

+

+ Parts of Kathmandu district were declared bird flu emergency zones on August 16, following a meeting of officials from the Department of Livestock Services and the Kathmandu District Avian Influenza Technical Coordination Committee. All hatcheries in Kathmandu have been directed by the Agriculture Ministry to stop chick production. Local officials plan to cull within a week all fowls in the 20 farms in which H5N1 has been confirmed in the last month since the first outbreak in the district. So far 971,756 chickens have been culled and 1,016,910 eggs and 72,751 kilograms of feed have been destroyed. +

+

+ In Lalitpur district late last week, cases of H5N1 were found in four poultry farms, raising the number of Lalitpur poultry farms with confirmed cases to nine farms. Almost 4,000 chickens from those four farms were culled by a team from the Avian Influenza Technical Coordination Committee. The disease has also been reported in three poultry farms in the district of Kritipur. Since the first outbreak of H5N1 in the country in 2009, 172 human cases have been reported. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + + A joint study, recently published in Clinical Infectious Diseases, between HKU and Zhejiang University’s First Affiliated Hospital in Hangzhou suggests that H7N9 may be spreading through human feces. Researchers tested 12 patients admitted to the intensive care unit between April 10 and 23. Of the stool samples collected during post-mortem tests of the six patients who died, four samples tested positive for the H7N9 strain. H7N9 was not found in the dead patients’ blood or urine samples, or in tissue samples from the lung, heart, liver, kidney, or bone marrow. The research team suggested that the possibility of the virus spreading through feces may account for there being few recorded cases of human-to-human infection. Since the first know human case of H7N9 was reported in March, 135 cases and 45 deaths have been confirmed. +

+

+ Separately, Tommy Lam and colleagues, in a study published in the journal Nature this week, showed that the H7N9 virus likely originated from wild bird H7 viruses which reassorted with endemic H9N2 viruses. The mixing might have occurred in domestic ducks but the H7N9 viruses were found only in chickens in the present study. The group also discovered a hitherto unknown group of H7N7 viruses in Chinese poultry that were able to infect ferrets, suggesting that the H7N7 viruses may be of future pandemic concern. +

+

+ + Cambodia (H5N1) + + The World Health Organization (WHO) reported the death of a nine-year-old boy in Battambang province from the H5N1 virus earlier this month. Before he fell ill last month, the boy carried sick and dead chickens and ducks to be prepared as food by his sister. The WHO suspects that a probable reason for the virus’s spread is the unregulated and informal transportation on motorbikes of poultry between villages. Subsequent investigation by the Ministry of Animal Health and Production found dead poultry in the boy’s village and H5N1 has been confirmed in some of the animals. This recent death raises the total fatalities in the country this year to ten. A total of 37 human cases, all but eight of which proved fatal, have been recorded since 2003. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_08_29.html b/data/flu-report-html/usgs_avian_flu_report_2013_08_29.html new file mode 100644 index 0000000..b3fad5b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_08_29.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Aug 29, 2013 +

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+ News Update August 29, 2013 +

+
+

+ + H7N7 Avian Influenza in Poultry +
+ Italy +
+
+ . According to the Italian veterinary authorities , three outbreaks of H7N7 have been confirmed at turkey farms in the Italian province of Ferrara. Out of 19,850 susceptible turkeys, 1,300 birds died after contracting the virus. The birds were first sampled on the 19th of August with negative results, but later tests confirmed the H7 virus. To prevent the disease from spreading further, restriction zones have been established around the affected farms and the control measures being applied include quarantine, movement control throughout the country, and depopulation. +

+

+ + H5N1 in Poultry +
+ Nepal +
+ . Earlier this week, officials confirmed four outbreaks of H5N1 in Pagretar VDC of Sindhupalchowk district. To prevent the disease from spreading further, 1,300 chickens were destroyed, and officials are urging farmers throughout the country to notify their veterinarians if they notice any sick or dead birds, as the flu virus has been detected at more than half a dozen poultry farms throughout the area. +

+

+ + H5N1 Avian Influenza in Humans +
+ Nepal +
+ . Health officials at the Teaching Hospital of College of Medical Sciences in Bharatpur suspect that the H5N1 virus is the cause of the recent deaths of two women. Both women presented with common cold-like symptoms, and after “the twin deaths”, authorities believe that the women were infected with the virus; however, no samples were collected from either of the victims. At the same hospital, another female patient is suffering from similar symptoms. The woman, who lives near the Nawalparasi district, where a number of cases of bird flu cases have been confirmed, has been given Tamiflu and throat and nasal swabs were collected. Health officials hope to have the results back in one week. +

+

+ Due to the high number of outbreaks of bird flu throughout Nepal this year, the government has culled close to one million birds in the Bhaktapur district since the first outbreak was reported on the 26th of July. Officials plan to destroy all homegrown chickens and ducks within the next couple of weeks in hopes to prevent the disease from spreading any further. +

+

+ Additionally, the travel advisory committee from the Ministry of Foreign Affairs has issued a travel advisory to all Saudi nationals against traveling to Katmandu due to the recent outbreaks of the bird flu virus and the declaration of avian flu emergency. So far this year, about 50 cases of the H5N1 virus have been reported in Katmandu. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_09_09.html b/data/flu-report-html/usgs_avian_flu_report_2013_09_09.html new file mode 100644 index 0000000..6902b89 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_09_09.html @@ -0,0 +1,2076 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 09, 2013 +

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+ News Update September 9, 2013 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + Vietnam + + . According to a report submitted by researchers from South Korea and Hanoi, regional trade and wild birds are responsible for the recent spread of the low pathogenic avian influenza virus to Vietnamese domestic ducks. Between November 2011 and March 2012, researchers identified a total of 196 isolated cases. A total of 57 low pathogenic avian influenza viruses were identified primarily from domestic ducks located in different regions of Vietnam. The research noted a range of various subtypes of LPAI viruses: H3 (n=16), H4 (n=4), H6 (n=24), H7 (n=1) and H9 (n=10). The research concluded that further surveillance is necessary to fully understand and properly react to these unique avian influenza viruses and their epidemiology. +

+

+ + Avian Influenza in Poultry + +

+

+ + Italy + + . Italian health officials have confirmed that a male poultry worker has tested positive for H7N7. Transmission occurred when the worker was exposed to sick poultry while working in contaminated areas. As result of his infection, the worker has contracted conjunctivitis. Italian authorities have culled thousands of birds since the emergence of H7N7 on local farms in August. This recent outbreak is the first in Italian poultry since 2000. Authorities have enacted protection and surveillance zones around the affected farms. Other control measures include movement restrictions on poultry products and ongoing veterinary checks. +

+

+ + Mexico + + . Mexican officials confirmed two outbreaks of H7N3 earlier this week. The first outbreak, at a backyard farm in the state of Guanajuarto, reported that five quails were affected and that the situation has been resolved. The second outbreak, in the state of Jalisco, was confirmed at a layers farm with 10,000 birds. Information is still coming in about this outbreak and the number of deaths is not yet known. Control measures being applied including vaccination, screening and zoning, and movement control throughout the country. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia + + . The World Health Organization confirmed on September 4th that a 15-month-old boy tested positive for H5N1, bringing the number of human cases to 18 so far this year. The boy is currently being treated and is in stable condition. Cambodian health officials are urging parents and guardians to keep a watchful eye on children as they “seem to be the most vulnerable” against this deadly virus. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_09_13.html b/data/flu-report-html/usgs_avian_flu_report_2013_09_13.html new file mode 100644 index 0000000..c7883c2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_09_13.html @@ -0,0 +1,2098 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Sep 13, 2013 +

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+ News Update September 13, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Nepal (H5N1) + + The poultry industry in Nepal is reporting the closure of thousands of businesses and losses of over 7 billion rupees ($70 million USD) in the poultry sector, due to a recent outbreak of H5N1 in Kathmandu valley and other areas in Nepal. Consumer anxiety over rumors of the bird flu, rather than actual death of poultry, has caused the greatest blow to the poultry market in these areas. Businesspersons are predicting that with the poultry sector contributing nearly 4 percent of Nepal’s GDP, these losses will create a significant deficit in the country’s economy. +

+

+ + Italy (H7N7) + + Italian officials are reporting another three outbreaks of H7N7, after farms in the provinces of Bologna and Ferrara recently confirmed the presence of the strain. This brings the total number of outbreaks to 6 since August 28, according to researchers in Legnaro, Italy. Two of the farms affected were commercial and are owned by the same company as in some of the earlier outbreaks, while the third outbreak occurred in a small backyard flock. About 220,000 birds were destroyed in the three locations to prevent the spread of the outbreak, compared to the 730,000 total destroyed during the previous three outbreaks. Control measures being applied include stamping out, screening, disinfection of affected areas, quarantine, movement control, and limitations on treatment and vaccination. +

+

+ News Update September 9, 2013 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + Vietnam + + . According to a report submitted by researchers from South Korea and Hanoi, regional trade and wild birds are responsible for the recent spread of the low pathogenic avian influenza virus to Vietnamese domestic ducks. Between November 2011 and March 2012, researchers identified a total of 196 isolated cases. A total of 57 low pathogenic avian influenza viruses were identified primarily from domestic ducks located in different regions of Vietnam. The research noted a range of various subtypes of LPAI viruses: H3 (n=16), H4 (n=4), H6 (n=24), H7 (n=1) and H9 (n=10). The research concluded that further surveillance is necessary to fully understand and properly react to these unique avian influenza viruses and their epidemiology. +

+

+ + Avian Influenza in Poultry + +

+

+ + Italy + + . Italian health officials have confirmed that a male poultry worker has tested positive for H7N7. Transmission occurred when the worker was exposed to sick poultry while working in contaminated areas. As result of his infection, the worker has contracted conjunctivitis. Italian authorities have culled thousands of birds since the emergence of H7N7 on local farms in August. This recent outbreak is the first in Italian poultry since 2000. Authorities have enacted protection and surveillance zones around the affected farms. Other control measures include movement restrictions on poultry products and ongoing veterinary checks. +

+

+ + Mexico + + . Mexican officials confirmed two outbreaks of H7N3 earlier this week. The first outbreak, at a backyard farm in the state of Guanajuarto, reported that five quails were affected and that the situation has been resolved. The second outbreak, in the state of Jalisco, was confirmed at a layers farm with 10,000 birds. Information is still coming in about this outbreak and the number of deaths is not yet known. Control measures being applied including vaccination, screening and zoning, and movement control throughout the country. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia + + . The World Health Organization confirmed on September 4th that a 15-month-old boy tested positive for H5N1, bringing the number of human cases to 18 so far this year. The boy is currently being treated and is in stable condition. Cambodian health officials are urging parents and guardians to keep a watchful eye on children as they “seem to be the most vulnerable” against this deadly virus. +

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+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_09_23.html b/data/flu-report-html/usgs_avian_flu_report_2013_09_23.html new file mode 100644 index 0000000..f294b5c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_09_23.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 23, 2013 +

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+ News Update September 20, 2013 +

+
+

+ + Avian Influenza in Wild Birds + +

+

+ + Nepal + + . In the District of Bhaktapur, crows and pigeons have been dying, and the Bhaktapur Bird Flu Control Section has asked local people to bury the birds. The District Livestock Office said that it does not need to conduct bird flu tests because since August 15 the government declared Bhaktapur a bird flu crisis-hit zone. So far, over 720,000 adult fowl and over 275,000 chicks have been culled, and over 1 million eggs and 50,000 kg of chicken feed have been destroyed in an effort to control H5N1 in Nepal. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (H5N1) + + . In Cambodia, two more human cases of H5N1 have been confirmed: a 5-year-old girl from Takeo province and a 2-year-old girl from Kampot province. Both were admitted to Kantha Bopha Children’s Hospital. The girl from Kampot has died, and the girl from Takeo remains hospitalized and is in stable condition. These two cases bring the number of cases this year to 20, out of which only 9 have survived. Since the virus was first identified in Cambodia in 2004, 30 deaths from 41 human cases have been recorded, and this year has seen the worst outbreak. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_09_30.html b/data/flu-report-html/usgs_avian_flu_report_2013_09_30.html new file mode 100644 index 0000000..c42ccfc --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_09_30.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 30, 2013 +

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+ News Update September 27, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Nepal (HPAI H5N1) + + . The Nepalese veterinary authorities and the World Organization for Animal Health confirmed 43 new outbreaks of H5N1 in a two week span starting the 26th of July in the Bagmati, Lumbini, and Janakpur zones. A total of 55,628 birds died and 294,211 were culled. Control measures being applied include stamping out, screening, and the disinfection of contaminated areas. The source of the outbreaks is unknown and officials continue intense surveillance throughout the country in hopes to prevent future outbreaks. +

+

+ + Taiwan (LPAI H5N2) + + . The Council of Agriculture of Taiwan detected a new outbreak of low pathogenic H5N2 on a duck farm in Hualien County earlier this month during a required second round of surveillance testing. Of the 13,000 susceptible birds, 20 were found to be infected with the virus. Surveillance around the area remains high and control measures being applied include quarantine, movement control, screening and zoning, and disinfection. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_10_28.html b/data/flu-report-html/usgs_avian_flu_report_2013_10_28.html new file mode 100644 index 0000000..9e7ecd4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_10_28.html @@ -0,0 +1,2108 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Oct 28, 2013 +

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+ News Update October 25, 2013 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ In a recent report published in the scientific journal PLoS One, Dr. Bruce Kimball, a research chemist with the USDA reported that they successfully trained mice to “smell avian influenza in the feces of birds and humans.” Currently, it takes days and even weeks to collect lab samples and run cultures to determine if a bird has contracted the virus; and in humans, it can take weeks for symptoms to even become noticeable. The authors suggest this new development will expedite the process of identifying birds and humans that are infected with the virus. +

+

+ + Avian Influenza in Poultry + +

+

+ + Australia (HPAI H7N2) + + . The New South Wales Department of Primary Industries has confirmed that about 2,000 chickens have died of the H7 virus and an additional 400,000 were at risk at a commercial egg-layer farm in Young, New South Wales. Veterinarians believe that the chickens most likely contracted the virus from wild ducks as the disease was first noticed in the free range flocks and then subsequently in the caged layer flocks. To prevent the virus from spreading further, the infected farm has been quarantined and other farms in the area are being tested. Additionally, bird movement has been halted throughout the country. +

+

+ + Avian Influenza in Humans + +

+

+ + Indonesia (H5N1) + + . The Indonesian Ministry of Health, Directorate General of Disease Control and Environmental Health, recently confirmed that a 28-year-old man from the West Java Province died after contracting the H5N1 virus early in September. The source of the outbreak remains unknown. The victim lived near a pigeon racing arena and attended a market in a neighboring town and bought chicken pieces days before he became ill. Since 2005, Indonesia has reported 194 cases of the H5N1 virus, 162 resulting in death. +

+

+ + China (H7N9) + + . Chinese officials confirmed two new cases of the H7N9 virus so far this month. To date, a total of 136 human cases have been confirmed in China since the first human infection in late March. The victims, a 35-year-old man and a 67-year-old man, are both from the Zhejiang Province. Officials are concerned that the fall and winter months may bring an increase in respiratory diseases, like the flu, and are urging the public to be on high alert near live poultry to help combat the spread of the virus. Additionally, the borders are being closely monitored and health information is being distributed to travelers throughout the country. For more information, see the + + Centre for Health Protection’s avian influenza page + + . +

+

+ + Cambodia (H5N1) + + . The Ministry of Health of the Kingdom of Cambodia confirmed one new human case of H5N1 on October 22, bringing the total number of cases to 21 this year. The most recent victim, an eight-year-old girl from the Baray district in Kampong Thom province, is currently in stable condition. The girl had been in contact with dead poultry shortly before she become ill. Due to the high number of avian flu cases this year, a nationwide public health education radio campaign launched at the start of October. Additionally, public health education campaigns are being conducted in villages throughout the country reminding the public to wash their hands often, keep children away from poultry, and to stay away from sick or dead poultry. +

+

+ + Avian Influenza in Poultry + +

+

+ + Vietnam (H5N1) + + . Vietnamese health officials confirmed one new outbreak of the H5N1 virus in the Hoa Binh province on the 14th of October. Of the 1175 chickens and ducks, 370 died while the remaining 805 were destroyed. The source of the outbreaks remains unknown and control measures being applied including stamping out, movement control, and disinfection of contaminated areas. +

+

+ + Australia (H7N2) + + . Australian health officials confirmed a second outbreak of the H7 avian influenza virus on an egg farm in New South Wales earlier this week. This is the second H7 outbreak the state has seen this month. The egg farm is currently under lockdown. Officials believe that the two outbreaks are linked and investigations are underway to test this theory. The New South Wales Food Authority is relaying to the public that it remains safe to eat poultry and eggs. +

+

+ + Avian Influenza in Wild Birds + +

+

+ Last year, in an article published in the Proceedings of the National Academy of Sciences, it was reported that a new influenza A virus (H17N10) had been discovered – in a Central American bat. In a new study, a second influenza virus (H18N10) has been discovered in bats in Peru. The new virus was found in flat-faced bats (Artibeus planirostris) and when analyzed, its entire genome was found to be different from the earlier H17N10 virus. Based on these sequencing studies, the authors suggest that New World bats may harbor more genetic diversity than in mammals and birds combined. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_11_01.html b/data/flu-report-html/usgs_avian_flu_report_2013_11_01.html new file mode 100644 index 0000000..4326596 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_11_01.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Nov 01, 2013 +

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+ News Update November 1, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + China (H7N9) + + Chinese researchers recently conducted a study regarding last spring’s outbreak of H7N9 flu outbreak in southern China. According to the study, shutting down live poultry markets is 97 to 99 percent successful in preventing humans from contracting the virus. While only 135 human cases were confirmed during last spring’s outbreak, 45 of those cases resulted in fatalities. In most cases humans contracted the virus from infected birds, with only a few instances of humans passing the virus to humans. Live poultry markets are an ideal breeding ground for the virus, because of the crowded and unsanitary conditions. With the closing of the markets costing the economy an estimated $1.6 billion, other strategies of preventing outbreak besides mass extended closures are being explored. These may include instituting rest days in which the markets are closed for a day while they are disinfected, or a ban on leaving unsold poultry in markets from day to day. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (H5N1) + + The Cambodian Ministry of Health reported on October 31 a confirmed case of the H5N1 virus in the Battambang province. This is Cambodia’s 22nd H5N1 case in 2013. Cambodia has had 43 total confirmed cases of the H5N1 virus, with 32 of the cases having been children under 14 years of age. Of the 22 recent cases, 11 resulted in fatalities. The most recent case, a 6-year-old girl from Romdoul village in the Phnom Preuk district, is currently in stable condition; an ongoing investigation into the case found reports of recent chicken and duck deaths in the girl’s neighborhood and nearby villages. Officials hope that further investigation will provide more information about exactly how exposure of the virus occurred. A nationwide public health education campaign was recently launched; officials are specifically warning against the common practice of children handling poultry. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_11_08.html b/data/flu-report-html/usgs_avian_flu_report_2013_11_08.html new file mode 100644 index 0000000..da01e90 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_11_08.html @@ -0,0 +1,2074 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Nov 08, 2013 +

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+ News Update November 8, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Vietnam (HPAI H5N1) + + In the Mekong region of Vietnam, the deputy chairwoman of the southern Tien Giang Province People’s Committee declared on Wednesday an epidemic of the H5N1 flu in the Tan Phu and Tan Thoi communes of the Tan Phu Dong District. The outbreaks occurred from October 31 to November 4 at four different households whose communes hold more than 900 ducks. In total, 557 birds were affected by the disease and the remainder were destroyed, per regulations. Agencies involved with the epidemic are being required by the Committee to take measures to control the epidemic, including a ban on the transportation of poultry in or out of epidemic areas. In a similar event, the Sub-Department of Veterinary recently discovered that a herd of 300 ducks in Tan Huong Commune in the Dong Phu District was also infected with H5N1. All 300 ducks were destroyed. +

+

+ + Taiwan (LPAI H5N2) + + Taiwanese veterinary authorities confirmed on October 18 an outbreak of H5N2 at a farm in Hualien County during the required third round of surveillance as a result of previous H5N2 outbreaks. Of the 9,170 birds, 20 were tested. No unusual mortality were reported to date and none of the birds were destroyed. Other measures were applied, including quarantining, movement control, screening, zoning, disinfection, and the prohibition of vaccinations or treatment of affected animals. The source of the outbreak has yet to be determined. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + The World Health Organization and the Cambodian Health Ministry released a joint statement confirming the death on October 26 of a two-year-old girl from northwestern Pursat Province. Her death brings the total number of H5N1 cases reported in Cambodia in 2013 to 23. Out of 23 cases, only 11 have survived the virus. Investigators said that two months prior to the girl’s illness, poultry at her grandparent’s house, where she often stayed, unexpectedly died. Investigators are attempting to determine whether contact occurred between the girl and the dead chickens. This is Cambodia’s worst outbreak of H5N1 to date since its presence was first discovered in Cambodia in 2004. Cambodia has had 44 documented human cases total, and of that total, 31 have died as a result. +

+

+ + China (LPAI H7N9) + + The National Health and Planning Commission of China and the World Health Organization confirmed two new cases of H7N9 earlier this week, bringing the total to four H7N9 cases reported so far this fall. The first victim, a three-year-old boy from Guangdong Province, is in stable condition and is expected to be released from the hospital in the near future. The second victim is a 64-year-old woman from Zhejiang Province. The woman is a farmer and has a history of contact with live poultry. She remains hospitalized and is in critical condition. +

+

+ To date, 139 cases of H7N9 have been confirmed; 45 resulting in death. Ben Cowling, an associate professor at the University of Hong Kong’s school of public health, recently published a paper in the journal The Lancet “stating that H7N9 may follow a similar seasonal pattern to H5N1 bird flu, and predicted it would reappear this autumn and potentially cause a major epidemic this winter.” To help combat the disease, the Chinese government has increased surveillance and analysis of the epidemic, organized and distributed informational material to the public, and improved international communication to support cooperation. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_11_15.html b/data/flu-report-html/usgs_avian_flu_report_2013_11_15.html new file mode 100644 index 0000000..49cb29c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_11_15.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Nov 15, 2013 +

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+ News Update November 15, 2013 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Nepal (HPAI H5N1) + + . Nepalese officials confirmed that 85 new cases of H5N1 have occurred since August in three zones (Bagmati, Narayani, and Bheri). 43,691 birds have died of infection and 1,372309 were culled to prevent the disease from spreading further. Intensive surveillance activities have been implemented throughout the country and control measures being applied include disinfection of contaminated farms, movement control throughout the country, and control of wildlife reservoirs. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + The Cambodian Health Ministry and the World Health Organization released a joint statement confirming two new human cases of H5N1: a 29-year-old male from Pailin province and a 3-year-old boy from Kampong Speu province. Investigators have found that both individuals recently handled sick or dead poultry. The 29-year-old man died last week, and is Cambodia’s 33rd death from the virus out of 47 total cases. The 3-year-old boy is currently in critical condition. Health Minister Mam Bunheng is urging people to keep children away from sick or dead poultry and to make sure to wash thoroughly with soap and water after all contact with poultry. +

+

+ + Taiwan (LPAI H6N1) + + A report published this week by researchers in Taiwan urges the public to be cautious and prepared for the possibility of increasingly dangerous strains of a flu virus previously only found in chickens. The low virulent H6N1 strain was discovered in May in a 20-year-old Taiwanese woman. It is still unclear how the patient contracted the virus as she has no contact with poultry. She remains the only known case of H6N1 infection in people. The report investigates the possibility of the flu viruses combining to develop into more dangerous, thus more difficult to treat, flu strains. Scientists are calling for vigilance, and the continued development of flu vaccines. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_11_26.html b/data/flu-report-html/usgs_avian_flu_report_2013_11_26.html new file mode 100644 index 0000000..9f34a35 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_11_26.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Nov 26, 2013 +

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+ News Update November 22, 2013 +

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+ + Avian Influenza in Poultry + +

+

+ + Germany (LPAI H5) + + . The German veterinary authorities and the World Organization for Animal Health (OIE) confirmed a new outbreak of low pathogenic avian influenza on a poultry farm in the state of Thuringia. Out of 827 susceptible birds, four died after contracting the disease while the remaining 823 were destroyed to prevent the disease from spreading to other parts of the country. The virus has been characterized as the H5 subtype of the low pathogenic avian influenza virus, but the neuraminidase subtype has not been characterized. Control measures being applied include zoning and disinfection of contaminated areas. The source of the outbreak remains unknown. +

+

+ + Avian Influenza in Humans + +

+

+ + Indonesia (HPAI H5N1) + + . Indonesian health officials confirmed earlier this week that a 31-year-old woman from the West Java Province died after being treated for H5N1. She developed symptoms on November 1, and was treated at various health clinics before H5N1 was diagnosed. She died on November 11. The woman kept chickens in her home and could have come into contact with the 50-60 chickens in her neighborhood. This is the country’s 163rd bird-flu related death. +

+

+ Due to the Thanksgiving Holiday next week, there will be no Avian Influenza News next week. The reports will resume the week of December 2nd. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_12_06.html b/data/flu-report-html/usgs_avian_flu_report_2013_12_06.html new file mode 100644 index 0000000..c1a74ff --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_12_06.html @@ -0,0 +1,2071 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Dec 06, 2013 +

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+ News Update December 6, 2013 +

+
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+ + Avian Influenza in Poultry + +

+

+ + Germany (LPAI H5N3) + + , Netherlands (LPAI H5N3), Portugal (LPAI H7). Health officials in Germany, Portugal, and the Netherlands have each reported confirmed outbreaks of low pathogenic avian influenza during routine surveillance on poultry farms this week. All 9,392 affected birds have been destroyed to prevent the disease from spreading further. The source of the outbreaks remains unknown in all three cases and control measures being applied include movement control, screening and zoning, and disinfection of the contaminated areas. Scientists believe that “the flocks certainly have no connection with each other but the fact that they are small and/or mixed flocks suggests the most likely source of infection is wild birds while the poultry were on free range.” +

+

+ + Taiwan (LPAI H5N3) + + . The Taiwanese Council of Agriculture confirmed an outbreak of low-pathogenic avian influenza on a duck farm in Hualien County on November 4 while conducting routine surveillance in the wake of previous outbreaks. Twenty ducks in a flock of 10,000 were tested and found to have the virus. They all were in healthy condition and were “without clinical signs” and the flock did not have “abnormal mortality.” The source of this outbreak remains unknown and control measures being applied include movement control, screening, and disinfection of the infested area. +

+

+ + Avian Influenza in Humans + +

+

+ + H7N9 (Hong Kong) + + . Hong Kong health officials confirmed the territory’s first two human cases of H7N9. The first victim, a 36-year-old Indonesian woman, fell ill four days after purchasing, slaughtering, and eating a chicken from a live-bird market in Shenzhen. The woman visited a private doctor on November 25 and is currently in critical condition. The second victim, an 80-year-old man, was taken to the hospital on December 3, the same day he and his family arrived in Hong Kong from Shenzhen. He is in stable condition and is being treated in an isolation ward. It is unknown where the man came in contact with poultry, but officials believe it was not in Hong Kong. Close contacts with the woman and the man have been screened and none have tested positive for H7N9. +

+

+ Due to the recent outbreak, the Hong Kong Government has increased the response level of its pandemic flu preparedness plan, toughened their infection control measures, and has halted the sales of chicken from Shenzhen. Additionally, health officials are conducting border health checks to prevent the disease from entering the city. +

+

+ In other parts of China, Shanghai announced they will freeze all live poultry trading from January 31, the first day of the Chinese Lunar New Year, to April 30. This past year, 43 people in Shanghai died of H7N9 in April alone; and because experts have warned about the possibility of H7N9 reoccurring, officials are hoping that the sales ban will prevent any new outbreaks in 2014. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2013_12_13.html b/data/flu-report-html/usgs_avian_flu_report_2013_12_13.html new file mode 100644 index 0000000..69f45d3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2013_12_13.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Dec 13, 2013 +

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+ News Update December 13, 2013 +

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+ + Avian Influenza in Poultry + +

+

+ + China (H7N9) + + The Guangdong provincial health authority has confirmed the presence of H7N9 in China’s southern province which borders Hong Kong. Guangdong health authorities collected 70 samples from 13 live poultry markets in Shenzhen, and three samples from two different markets have tested positive for the bird flu H7N9. The authorities have been warning the general public to be aware of H7N9 transmission risks, but the markets remain open at the present time. Efforts have been made to tighten prevention measures after three new cases were recently confirmed in Hong Kong and east China’s Zhejiang Province. The Chinese mainland has now had a total of 140 human H7N9 cases reported, and out of that total, 53 have died. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + + The Health and Family Planning Commission of Guangdong has reported three new human cases of H7N9 in recent weeks. The first individual, a 36-year-old domestic helper, may have contracted the virus from one of the markets in Shenzhen that was recently found to be infected with H7N9. The second patient, an 80-year-old male, had also recently visited Shenzhen, but had not directly handled any live birds. In the third case, a 30-year-old man from Zhejiang, who is the son-in-law of an earlier confirmed case was found infected with H7N9. Whether he became infected by person-to-person transmission or by exposure to infected poultry is not known. The commission is warning that the risk of the bird flu spreading in the province is high and has urged the public to stay alert. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_01_09.html b/data/flu-report-html/usgs_avian_flu_report_2014_01_09.html new file mode 100644 index 0000000..226363b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_01_09.html @@ -0,0 +1,2113 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 09, 2014 +

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+ News Update January 10, 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + China (H5N2) + + . Chinese health officials confirmed a recent outbreak of H5N2 in Hebei Province, about 200 kilometers from Bejing, on December 24. At the infected poultry farm, 4,000 chickens died after contracting the H5N2 virus while the remaining 125,700 chickens were culled and safely disposed of. This is the first avian influenza outbreak to reach the Chinese mainland. To prevent the disease from spreading further, areas within 3 kilometers of the farm are being closely monitored and all poultry in the area has been disposed of. Additionally, all members of the staff at the infected farm are under quarantine and movement control has been enforced. +

+

+ + China (H5N1) + + . The Ministry of Agriculture confirmed an outbreak of H5N1 at a poultry farm in the southwest province of Guizhou on January 2. In total, 8,500 chickens died while the remaining 23,067 were destroyed to prevent the virus from spreading. Additional control measures being applied include sterilization and disinfection of the area. +

+

+ + South Africa (H7N1 & H7N7) + + . The South African veterinary authority and the World Health Organization confirmed on December 24 that three ostrich farms in the Blue Crane Route region of Eastern Cape Province reported cases of H7N1 between October 20 and November 20. In total, 64 of the 2,906 birds tested positive with the virus. Additionally, an outbreak of H7N7 was confirmed on an ostrich farm in Oudtshoorn in Western Cape Province in early October. One bird in a commercial flock of 1,005 tested positive for the virus. The source of both outbreaks remains unknown. +

+

+ + South Africa (H5N2) + + . The South African veterinary authority and the World Health Organization confirmed outbreaks of the H5N2 virus at seven ostrich farms throughout the Western Cape Province between July 9 and November 2. Of the 10,717 birds, 2,230 tested positive for the virus. None of the birds died or were destroyed and numerous control measures have been applied to control the situation. +

+

+ + Vietnam (H5N1) + + . Health officials confirmed an outbreak of H5N1 at a duck farm in the Vietnamese Province of Bac Lieu on December 28. All 1,500 ducks were destroyed to prevent the disease from spreading. Health officials in the country remain on high alert, as Tet, the Vietnamese New Year celebration, is just around the corner and poultry consumption increases. +

+

+ + Avian Influenza in Humans + +

+

+ + Canada (H5N1) + + . On January 7, Canadian health officials confirmed North America’s first and fatal case of H5N1. The victim, whose age and gender have not yet been released, was an Alberta resident who had recently returned from a month’s visit to China. The person began showing flu-like symptoms on December 27 on a flight from Beijing to Vancouver. The person then continued on to Edmonton on a connecting flight and was admitted to the hospital on January 1 and died on January 3. +

+

+ Federal Health Minister Rona Ambrose did report that the victim “was a relatively young person with no underlying health conditions, and, who unlike other avian flu fatalities, did not have contact with chickens on a farm or in an open market.” He went on to remind people that the risk of contracting the disease is “very low” and that it is not a disease that is transmitted between humans. The two people traveling with the victim are being closely monitored for 10 days to guarantee that they do not show any flu-like symptoms. Additionally, the passengers on the flights have been notified of the incident. +

+

+ B.C.'s provincial health officer, Dr. Perry Kendall, said that "It was only a matter of time, given global travel patterns, before we saw cases in North America.” Officials are confident that this is an isolated incident and are working with China in hopes to determine how and where the victim was exposed to H5N1. +

+

+ + Hong Kong (H7N9) + + . Hong Kong health officials confirmed that an 80-year-old man died after contracting the H7N9 virus. The man, who lived in Shenzhen's Bao An District, tested positive for the virus on December 6 and remained in the hospital until his death on December 26. While the source of the outbreak has not been confirmed, “his family was said to have prepared live chicken in their Shenzhen home.” This is the country’s second H7N9 outbreak this month. The first victim, a 36-year-old woman, is currently in stable condition. Hong Kong officials have increased border control to prevent further outbreaks. +

+

+ + Taiwan (H7N9) + + . Taiwanese health authorities confirmed on December 31 that a Chinese tourist became infected with the H7N9 virus while visiting Taiwan. The 86-year-old man traveled to Taiwan on December 17 from Jiangsu Province in Mainland China and started developing flu-like symptoms on December 19 and was admitted to the hospital on December 23. He is currently in stable condition. This is the country’s second case of H7N9 this year and control measures being applied include border control and increased surveillance of inbound travelers. +

+

+ + Hong Kong (H9N2) + + . Chinese health officials confirmed that an 86-year-old man from Shenzhen who was traveling to Hong Kong was diagnosed with the H9N2 avian influenza virus, a strain that has not been seen in the country in four years. The man was hospitalized on January 1 and is currently in stable condition. While the source of the outbreak remains unknown, the man did frequent a market with a live poultry stall close to his home every day. His family members and those who were in close contact with the victim have not shown flu-like symptoms and are being closely monitored. "This virus is not as serious as H5N1 and H7N9 and the virus is diluted in the air. As long as you don't touch birds - especially those that are dead - and their feces you need not worry too much." +

+

+ + China (H7N9) + + . The Chinese Centre for Health Protection of the Department of Health confirmed four new outbreaks of the H7N9 virus since the first of the year. The victims, an 86-year-old man from Shanghai, a 34-year-old woman from Zhejiang, a 47-year-old man from Foshan, and a 71-year-old man from Yangjiang have all been hospitalized and are in critical condition. Close contacts with all of the victims are being carefully monitored for flu-like symptoms. To date, a total of 148 human cases of the H7N9 virus have been confirmed on Mainland China. The country has increased surveillance at the borders and the public is being urged to avoid live poultry markets, wash hands frequently, cook poultry thoroughly before eating, and stay away from crowded areas. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_01_22.html b/data/flu-report-html/usgs_avian_flu_report_2014_01_22.html new file mode 100644 index 0000000..ac0a6da --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_01_22.html @@ -0,0 +1,2109 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 22, 2014 +

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+ News Update January 23, 2014 +

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+ + Avian Influenza in Wild birds + +

+

+ + South Korea (HPAI H5N8) + + . The South Korean Ministry of Agriculture, Food and Rural Affairs confirmed on January 20 that about 60 Baikal teal ducks died of H5N8 in Gochang, North Jeolla Province. Lab results confirmed that it is the same strain that infected poultry farms throughout the province and led to the culling of 200,000 just days before. Baikal teal ducks migrate from Sibera to South Korea in November for the winter, and due to the recent outbreaks, scientists believe that these ducks spread the virus to the neighboring farms. Authorities remain on high alert and have banned the movement of poultry, farm workers, and veterinarians. +

+

+ + Avian Influenza in Poultry + +

+

+ + Vietnam (HPAI H5N1) + + . The Vietnamese veterinary authorizes and the World Health Organization confirmed four outbreaks of H5N1 throughout Bac Ninh province on January 13. Of the 9,787 susceptible birds, 2,600 died after becoming infected with the virus while the reaming 7,187 were destroyed to prevent the disease from spreading. Various control measures have been applied including movement control, vaccination, and disinfection of contaminated areas. +

+

+ + China (HPAI H5N1) + + . The Chinese Ministry of Agriculture confirmed an outbreak of H5N1 at a farm in Hubei Province on January 14. Of the 50,000 susceptible chickens, 3,200 died after contracting the disease while the remaining 46,800 were destroyed. To prevent the disease from spreading, control measures being applied include movement control, screening and zoning, and sterilization of the infected area. +

+

+ + South Korea (HPAI H5N8) + + . The South Korean Animal and Plant Quarantine Agency confirmed nine outbreaks of highly pathogenic H5N8 in the past week at poultry farms in Gochang, North Jeolla Province. In total, about 200,000 birds have been destroyed to prevent the disease from spreading. Additionally, a temporary lockdown was enforced at all poultry farms in North and South Jeolla provinces. “The provincial government is trying to find out the causes of the outbreaks, suspecting that migratory birds might have spread the virus.” This is the country’s first case of avian influenza since May 2011. +

+

+ + Vietnam (LPAI H7) + + . The Vietnamese Department of Animal Health, Ministry of Agriculture and Rural Development confirmed two outbreaks of the H7 low pathogenic avian influenza virus at a live market in the city of Can Tho. The area was disinfected and authorities will continue live-market surveillance. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + + . The number of H7N9 cases in China continues to grow. Last week alone, Mainland China confirmed 14 new cases, 11 within a two-day span, including two deaths - one from a woman from Zhejiang province and the other from a man from Hong Kong who contracted the virus after visiting the Mainland. The majority of the new cases are being seen in H7N9 “hot spots” in eastern China: Guangdong province, Zhejiang province, and the city of Shanghai. Of the most recent cases, six are men and five are women ranging in ages from 28-78. As of January 17, five were in critical condition, two were in severe condition, and three were in stable condition. +

+

+ With the Chinese New Year celebration just around the corner, Chinese health officials are on high alert as travel around the country is expected to increase substantially. In hopes to minimize the number of new avian influenza cases, health officials are urging people, especially the elderly, to limit their contact with poultry. Additionally, Hong Kong announced that they would begin conducting blood tests on all imported poultry to determine if they have the virus. Any birds that test positive will be destroyed as well as those that have been in contact with infected birds. +

+

+ + Canada (HPAI H5N1) + + . In hopes to further advance H5N1 research, Canada’s National Microbiology Laboratory “has isolated live H5N1 virus from respiratory specimens taken from an Alberta woman who died recently from infection of that bird flu virus.” The woman died on January 3 after contracting the virus during a three-week trip to China in December. This was the first appearance of the virus in North America. Scientists hope that by isolating the virus, they will be able to learn more about the virus and how it is spread, as the victim did not come in contact with poultry while in China. Initial analysis of the strain shows that it resembles the H5N1 virus previously identified in China. +

+

+ + China (LPAI H7N9) + + . The Shanghai Municipal Commission of Health and Family Planning reported on January 20 that a medial worker at a Shanghai hospital died of H7N9, escalating the concern that avian influenza may be transmittable from person-to-person. The victim, a 31-year-old man, died on January 18. Shanghai has confirmed seven avian influenza cases so far this year and officials are worried that the number may rise during the upcoming Chinese New Year celebration. Gregory Hartl, a spokesman for the World Health Organization said “It’s always a concern when health workers die. Hospitals and other medical facilities are a flash point for human-to-human transmission. We would be very much wanting to follow up in as much detail as possible on this case.” +

+

+ + Vietnam (HPAI H5N1) + + . The Vietnamese Department of Preventive Medicine under the Ministry of Health confirmed the country’s first human case of H5N1 of the year on January 20. The victim, a 52-year-old man from southern Binh Phuc province, was hospitalized on January 11 for flu-like symptoms and died on January 18. This is the country’s first case of H5N1 in nine months. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_01_31.html b/data/flu-report-html/usgs_avian_flu_report_2014_01_31.html new file mode 100644 index 0000000..01c674a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_01_31.html @@ -0,0 +1,2094 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 31, 2014 +

+
+ + newer + +
+

+ News Update January 30, 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + South Korea (LPAI H5N8) + +
+ The Republic of Korea’s Animal and Plant Quarantine Agency has confirmed the presence of H5N8 at two farms in Naju, South Jeolla Province and Cheonan, South Chungcheong. A poultry farm in Milyang, South Gyeongsang Province as well as a chicken farm in Hwaseong, Gyeonggi Province have reported the suspected presence of bird flu this week. A total of 18 farms in six provinces are considered positive according to the South Korean Ministry of Agriculture, Food and Rural Affairs (MAFF). Recent reports are leading authorities to believe that the highly pathogenic virus may be spreading to the southeast, as migratory birds collected from Eulsukdo in Busan this week have also tested positive for avian influenza. Officials are currently testing to see if these birds have the same H5N8 strain. The government said that migratory birds is the likely source of the outbreaks, but the Scientific Task Force on Avian Influenza and Wild Birds, convened by the United Nationals Environmental Programme has released a statement that “There is currently no evidence that wild birds are the source of this virus and they should be considered victims not vectors ” and that “focusing attention on wild birds can misdirect critical resources away from effective disease control and result in negative conservation outcomes and loss of biodiversity.” Efforts to stop the spread are being taken; 18,000 birds located at the farm in Gyeonggi were destroyed, and all farms within 3 kilometers of the two farms in Jeolla and South Chungcheong have been culled. More than 400,000 total ducks and chickens have been either culled or destroyed since the beginning of the outbreak. +
+

+

+ + Avian Influenza in Poultry + +

+

+ + China (LPAI H7N9) + +
+ The Ministry of Agriculture in Beijing recently reported two outbreaks of H7N9. The first outbreak occurred in an agriculture products markets in Guangzhou, Guangdong. Out of 185 specimens collected, two tested positive for the virus. As result, 1,200 birds were destroyed. The second outbreak occurred at the Meiling agriculture products market in Jinjiang, Quanzhou, Fujian. Here, 220 specimens were collected and one specimen tested positive for the virus. Across the country, a total of 33,400 samples from 2,402 sites have been tested in 2014 and 8 samples (including those above) have tested positive for H7N9. All were from live bird markets. Control measures being applied to these outbreaks include stamping out, movement control inside the country, zoning, disinfection of infected premises/establishments, dipping/spraying, and the prohibition of vaccination or treatment of affected animals. +

+

+ + Hong Kong (LPAI H7N9) + +
+ Hong Kong's food and health authority confirmed this week the presence of H7N9 in a consignment of silkie chickens from Guangdong, China at the Cheung Sha Wan Temproary Market. Live poultry are held at the Temporaray Market pending the outcome of laboratory testing. Because of the positive results, the entire 20,000 poultry in the market at the time were culled Tuesday morning. Furthermore, the government is suspending poultry import from the mainland and live poultry sales on local markets for a minimum of three weeks. Monitoring of the mainland chicken farms will continue after the three weeks of suspension of live poultry trading. +

+

+ + South Korea (HPAI H5N8) + +
+ South Korea imposed a 12-hour lockdown on Monday on poultry farms in three provinces to curb a spreading bird flu outbreak first reported at a duck farm in Gochang, 300 kilometers southwest of Seoul. The H5N8 strain of bird flu has since been identified in 18 other farms, with tests being carried out in 21 others. More than 640,000 poultry have been destroyed, and 810,000 more have been targeted to be destroyed as a result of the outbreak. Control measures being applied include control of wildlife reservoirs, stamping out, quarantining, movement control inside the country, zoning, disinfection of infected premises/establishments, and the prohibition of vaccination or treatment of affected animals. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H10N8) + +
+ Health authorities in east China's Jiangxi Province have confirmed a second human case of H10N8. The patient, a 55-year-old woman in Nanchang is currently in critical condition. This follows the first case of H10N8 reported in December of 2013 in the Jiangxi Province, a 73-year-old woman who later died from the virus. +

+

+ + China (LPAI H7N9) + +
+ Chinese health authorities are also reacting to the spreading presence of H7N9, most notably in Zhejiang, where 53 cases with 12 total fatalities have been reported and a possible case of human-to-human transmission. Health authorities in Zhejiang Province are currently investigating the source of infection in a specific family located in Hangzhou. A 49-old-male tested positive for the virus on January 20 and died a couple of days later. Additionally, the man’s 23-year-old daughter tested positive three days later, as well as his wife on January 27. The way in which the virus was spread among the family is still under investigation, but the timing of the cases may indicate that person-to-person transmission may have occurred. Of China’s cases so far this year, some 70 percent had been in contact with live poultry. In reaction, Zhejiang has banned the live poultry trade in areas where infected patients have been found. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_02_07.html b/data/flu-report-html/usgs_avian_flu_report_2014_02_07.html new file mode 100644 index 0000000..cd6c5d2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_02_07.html @@ -0,0 +1,2086 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 07, 2014 +

+
+ + newer + +
+

+ News Update February 7, 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + South Korea (HPAI H5N8) + + . South Korean farm ministry officials announced that the country has culled two percent of its domestic poultry population, or 2.8 million birds, since the deadly virus H5N8 was first discovered January 17. To date, 15 poultry farms have confirmed outbreaks and 19 cases of the virus have been verified in migratory birds. In hopes to prevent further outbreaks, South Korea is increasing disinfection measures for migratory birds and limiting the movement of livestock workers in the affected provinces. +

+

+ Because of the recent outbreaks, poultry sales have dropped substantially, adding yet another strain on the farmers. South Korea has had four bird flu outbreaks in the past 10 years; none of them have occurred in humans. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + . In a joint statement, The World Health Organization and the Institut Pasteur du Cambodge confirmed the country’s first human case H5N1 of the year on February 1. The victim, a 5-year-old boy from Chongda village, in Kompong Thom province was first treated for flu-like symptoms on January 24. The boy is currently being treated with Tamiflu at a Children’s hospital in Siem Reap. +

+

+ + China (LPAI H7N9) + + . Hong Kong’s Centre for Health Protection confirmed on February 2 that a six-year-old Hong Kong citizen who lives in Shenzhen tested positive for the H7N9 virus. The boy, who is currently in stable condition, developed flu-like symptoms January 27, traveled to Hong Kong the next day, and after returning with a fever, was taken to the hospital and tested positive for the virus on February 1. +

+

+ Additionally, authorities confirmed two cases of H7N9 in Guangdong province and one in Hunan province. Two victims, a five-year-old boy and a 38-year-old man, are in stable condition, and the second victim, an 82-year-old man died after contracting the virus on January 30. +

+

+ These recent outbreaks, in addition to the ten new cases confirmed on February 4, push the total number of new cases to 301 within the past year. Since October, there have been 165 new, confirmed cases of H7N9 and 67 deaths. Thirteen provinces have been affected with H7N9, with the hardest hit provinces being Zhejian, Guangdong, and Jiangsu. The ten most recent outbreaks span five provinces and have affected men, women, and children ages 4-84. Of the ten victims, three have died while the remaining seven are in critical or severe condition. +

+

+ + China (LPAI H10N8) + + . Scientists around the world are growing more concerned with H10N8, a new strain of the avian influenza virus capable of infecting humans. The first victim, a 73-year-old woman from Nanchang City in Jiangxi province, died on December 6, and the second victim, a 55-year-old woman also from Jiangxi province, is currently in critical condition. Scientists are especially interested in the second case as “It reveals that the H10N8 virus has continued to circulate and may cause more human infections in future." More research is being done on this deadly virus and tests on both humans and poultry have increased in hopes to offer new insight. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese officials confirmed the country’s second human H5N1 death of the year on February 3. The victim, a 60-year-old woman from southern Dong Thap province, was hospitalized on January 27 with shortness of breath and died the next day. Officials reported that the woman did often come in contact with live poultry, increasing the risk of contracting the deadly virus. Those who came in close contact with the woman are being closely monitored but none have reported flu-like symptoms. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_02_19.html b/data/flu-report-html/usgs_avian_flu_report_2014_02_19.html new file mode 100644 index 0000000..e7fe80b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_02_19.html @@ -0,0 +1,2130 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 19, 2014 +

+
+ + newer + +
+

+ News Update February 19, 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + Hong Kong (possible H7N9) + + . Officials reported on February 17 that thirteen birds were found dead on the pavement in the Hong Kong region of New Territories. Photos in the local media suggest that all 13 were red-whiskered bulbuls. The birds are being examined to see if H7N9 was a factor in their deaths, although this virus is not known to be pathogenic to birds. This news comes after poultry markets on the mainland have been closed in Guangzhou and Shenzhen to prevent further spread of the virus. A spokesperson from the Hong Kong Bird Watching Society believes “there is no direct connection between the death of birds and H7N9. Red-whiskered bulbuls do not move among poultry or eat their food so there is little chance they would be affected with H7N9.” Lab results should be available within the next couple of days. +

+

+ + Avian Influenza in Poultry + +

+

+ + Cambodia (HPAI H5N1) + + . Cambodian health officials confirmed an outbreak of H5N1 in Kampong Champ province. Of 5,250 birds, 4,466 died while the remaining 784 were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control, and disinfection of the contaminated areas. +

+

+ + Indonesia (HPAI H5N1) + + . Indonesian health officials reported an outbreak of H5N1 in Central Java province. Since February 6, 4,310 ducks and 460 chickens have died after contracting the disease. To prevent the disease from spreading, a mass cull has been executed in addition to vaccination and the disinfection of contaminated areas. +

+

+ + Indonesia (HPAI H5N1) + + . The head of Trenggalek Animal Health Center confirmed an outbreak of H5N1 after thousands of birds were found dead in the East Java province. The 20 samples that were tested were identical to the virus that had previously killed poultry in the area. In an effort to prevent the disease from spreading further, all poultry at the affected farm will be culled. Additionally, all poultry within a 200-mile radius of the farm will be vaccinated and the premises will be disinfected. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese officials reported on February 18 that 24 outbreaks of H5N1 have been confirmed in 11 provinces throughout Vietnam including Long An, Ca Mau, Khanh Hoa, Ba Ria- Vung Tau, Dak Lak, Kon Tum, Tay Ninh, Phu Yen, Nam Dinh, and Lao Cai. To date, about 30,777 birds have been culled to prevent the disease from spreading further. Additionally, Vietnam's Ministry of Agriculture and Rural Development (MARD) has banned all poultry sales both in and out of the country, is requesting that all live poultry markets be closed at least one day per month so the area can be sterilized, and is working on increasing people’s awareness of the deadly virus. +

+

+ + South Korea (HPAI H5N8) + + . South Korean health officials reported 11 new cases of H5N8 since January 16. In total, 151,700 birds were susceptible to infection, 11,080 confirmed cases, 11,080 dead birds, and 140,620 birds were destroyed in order to stop the spread of infection throughout four provinces: South Jeolla, North Chungcheong, Gyeonggi, and South Gyeongsang. Additional measures taken include control of wildlife reservoirs, stamping out, quarantine, movement control inside of the country, zoning, disinfection, vaccination prohibited, and no treatment of infected animals. +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed the 5 separate outbreaks of H7N9 across southwestern China in live bird markets. Samples were taken from chickens, ducks, geese, and environmental samples, 11 returned positives. In total 158,823 birds were deemed susceptible, all of which were destroyed to prevent spread. Measures being applied include stamping out, movement control inside the country, zoning, disinfection of premises, and dipping/spraying. No additional measures are to be applied. +

+

+ + China (HPAI H5N1) + + . Beijing’s Ministry of Agriculture confirmed an outbreak of H5N1 on February 18 in Guizhou Province. Authorities reported that 3,629 chickens had flu-like symptoms while 976 were found dead after contracting the disease. To prevent the virus from spreading, the farm has been disinfected and all poultry has been culled. +

+

+ + Egypt (HPAI H5N1) + + . The Veterinary Medicine Department in Beni Suef governate recently confirmed an outbreak of H5N1 in the village Ezbet Gheita. After four dead birds tested positive for the virus, the remaining birds, including 25 chickens and 42 ducks, were destroyed and properly disposed of. Additionally, the eight villages neighboring Ezbet Gheita will be inspected to ensure the virus does not spread. This is Egypt’s first H5N1 case since April 2013. +

+

+ + Avian Influenza in Humans + +

+

+ + Canada (HPAI H5N1) + + . The Alberta woman who died in early January after contracting the H5N1 virus may have caught it at an illegal live bird market. Beijing's Centre for Disease Prevention and Control hypothesizes the contraction occurred while the patient was on a visit to Beijing and passed through an illegal live bird market. Live bird markets, although illegal in Beijing since 2005, are customary and remain open throughout the municipality illegally. Chinese officials are testing the area around the former bird market to confirm the source of the infection. +

+

+ + Cambodia (HPAI H5N1) + + . Kratie Provincial Health Department confirmed that two siblings, ages 3 and 7,died from avian influenza. H5N1 has been confirmed in the 7-year-old but no samples were collected from the younger child. The apparent cause of exposure was a dead chicken that the parents found in the village and then cooked for dinner. Provincial officials were dispatched to the village to educate them not to touch or eat ill animals. The village had previously suffered an outbreak of avian influenza that killed 350 chickens in January. +

+

+ + Malaysia ex China (LPAI H7N9) + + . Health officials confirmed that a 67-year-old woman who was part of a tour group from Guangdong province contracted H7N9 at a currently unspecified time and place. The group was visiting the province of Sabah at the time. The woman is currently receiving treatment at a private hospital in the state capital Kota Kinabalu. +

+

+ + China (LPAI H10N8) + + . Chinese health officials confirmed another human H10N8 death on February 13. The victim, a 75-year-old-man from Nanchang, the capital of Jiangxi, first developed flu-like symptoms on February 4 and died on February 8. Due to the extremely high number of deaths from avian influenza viruses already this year, health officials are urging the public to keep away from live poultry markets and wash hands regularly. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_03_07.html b/data/flu-report-html/usgs_avian_flu_report_2014_03_07.html new file mode 100644 index 0000000..89e23a3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_03_07.html @@ -0,0 +1,2146 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Mar 07, 2014 +

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+ News Update March, 7 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + China (LPAI H7N9) + + . The World Health Organization confirmed two H7N9 outbreaks in the south-central Province of Hunan on February 28. Both outbreaks were found during routine surveillance checks at live bird markets. All of the 160 susceptible birds were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control throughout the country, and disinfection of contaminated areas. +

+

+ + Netherlands (LPAI H5N1) + + . The World Health Organization and Holland’s Central Veterinary Institute confirmed an outbreak of low pathogenic H5N1 on February 27 in the Flevoland region. All 40,237 birds at the farm were destroyed to prevent further outbreaks. A 1km protection zone has been established and a follow-up report will be released within the next week. +

+

+ + South Korea (HPAI H5N8) + + . Multiple outbreaks of H5N8 have been confirmed throughout South Korea, including one at a government-run facility research center. In total, about 315,213 birds have been destroyed, including 6,000 chickens and ducks from the research center. The source of the outbreaks remains unknown and the country remains on high alert as they hope to prevent further outbreaks of the virus. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese health officials confirmed outbreaks of H5N1 in four provinces throughout the country: Hai Duong, Gia Lai, Soc Trang, and Hung Yen. Of 11,305 susceptible birds, 3,742 died while 7,563 were destroyed to prevent the disease from spreading. Various control measures are being applied including stamping out, movement control, and disinfection of contaminated areas. +

+

+ + Avian Influenza in Humans + +

+

+ + Hong Kong (LPAI H7N9) + + . On March 3, Hong Kong health officials confirmed two new H7N9 cases. The victims, a 5-year-old girl from the Guangdong province and a 2-year-old girl from the Zhejian province, have both been hospitalized and are being treated. The 2-year-old girl, who had visited mainland China with her family, went to a live-bird market on February 24 and is expected to make a full recovery. “Officials said they expect the prevalence of influenza to increase throughout the winter season and asked the public to take precautions against infection.” +

+

+ Additionally, two families are being isolated at Queen Elizabeth Hospital after a two-year-old boy was placed in a bed next to the girl from Zhejian who was infected with the H7N9 virus. The young girl has recovered, and she and her family have been sent home. The young boy and his family have to be isolated for 10 days to ensure that they do not have the virus. +

+

+ + China (LPAI H7N9) + + . The National Health and Family Planning Commission of China confirmed five new cases of H7N9 on February 23 and 24. Four of the victims, a 31-year-old man from the Guangdong province, a 76-year-old man from Guangdong province, a 75-year-old woman from Guangdong province, and a 33-year-old man from Guzngxi province, all have a history of exposure to poultry and are being treated in the hospital. The final victim, a 55-year-old woman from Guangdong province, is in critical condition and the source of her outbreak remains unknown. China has been hit especially hard with avian influenza over the past couple of months and the Chinese government continues to educate the public, increase surveillance methods, and monitor poultry that comes in and out of the country to prevent further outbreaks. +

+

+ News Update February 28, 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Cambodia (HPAI H5N1) + + . The Cambodian Ministry of Agriculture, Forestry and Fisheries confirmed two outbreaks of H5N1 have been confirmed in the provinces of Kampong Speu and Kandal. Of the 700 susceptible birds, 410 died after contracting the disease while the 290 remaining birds were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control, and disinfection of contaminated areas. +

+

+ + India (HPAI H5N1) + + . The Indian Veterinarian Authorities and the World Health Organization confirmed on February 6 that two house crows (Corvus splendens) tested positive for H5N1 in the state of Orissa (sometimes referred to as Odisha). The source of the outbreak remains unknown and the contaminated area has been disinfected. +

+

+ + Nepal (HPAI H5N1) + + . Nepalese health officials confirmed outbreaks of H5N1 at two poultry farms in the city of Itahari, in the Sunsari District in the Koshi Zone. All 1,552 chickens and 20 crates of eggs were destroyed to prevent the disease from spreading. No human cases have been identified in the country at this time. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese health officials reported on February 26 that chickens have been infected with H5N1 in 21 different municipalities and provinces throughout Vietnam leading to the destruction of about 64,000 chickens. “Vietnam News Agency (VNA) reports the outbreak was attributed to the complicated weather in the first two months of the year, and the increase in shipping and trading of poultry during the recently-ended Lunar New Year (Tet) festival.” To prevent further outbreaks, border control checks will intensify and monitored closely in hopes to catch any infected birds before entering or leaving country. +

+

+ + China (LPAI H7N9) + + . The article ‘Role of poultry in spread of novel H7N9 influenza virus in China’ to be published in the Journal of Virology by Jackwood-Pantin and co-workers looks at the recent H7N9 outbreaks in China and provides experimental data to show that quail and chickens are susceptible to infection and shed large amounts of virus and are likely important in the spread of the virus to humans.” Other birds, including domestic and Muscovy ducks, Embden geese and mallards were also susceptible. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + . On February 20, the Ministry of Health and the World Health Organization confirmed the country’s third H5N1 case of the year. The victim, a four-year-old boy from Kratié Province, had been in contact with dead poultry six days before developing symptoms and is now “on the mend.” Earlier this year, about 350 birds died in the same village after contracting avian influenza. On 2/28/14, two additional H5N1 cases were reported from Kampong Cham province. Infection in two girls, aged 10 and 11 from different villages were confirmed. Both girls appeared to have had mild symptoms and have recovered. +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed two new outbreaks of H7N9 on February 26. The victims, a 65-year-old woman from Guangzhou and a two-year-old girl from Zhejiang, have both been hospitalized and the 65-year-old woman is in critical condition. Since October, 237 illnesses have been detected bringing the total number of human H7N9 cases in China to 373. +

+

+ The European Centre for Disease Prevention and Control as well as the Public Health Agency of Canada are conducting risk assessments and have reported that “the virus doesn't spread easily among people, though limited person-to-person transmission may occur when there is close contact, the update noted. The H7N9 virus bears close watching, though, because less severe cases have been seen in influenza-like illness surveillance, and the PHAC said it expects more cases to be reported as the flu season progresses.” +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_03_20.html b/data/flu-report-html/usgs_avian_flu_report_2014_03_20.html new file mode 100644 index 0000000..1f767bd --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_03_20.html @@ -0,0 +1,2213 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Mar 20, 2014 +

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+ News Update March, 13 2014 +

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+ + Avian Influenza in Wild birds + +

+

+ + South Korea (H5N8) + + . Korean officials confirmed that a dead bean goose found in the city of Gwacheon in Gyeonggi province tested positive for H5N8. To prevent the disease from spreading, restricted access has been enforced within 10-kilometers of where the dead goose was found. Additionally, the city of Seoul has banned the movement of poultry, increased quarantine measures, and the Seoul Zoo which had just reopened two weeks ago from an earlier outbreak is once again closed until further notice. +

+

+ + Avian Influenza in Poultry + +

+

+ + China (HPAI H5N1) + + . The Chinese veterinary authorities and the World Health Organization confirmed an outbreak of highly pathogenic avian influenza at the junction of three villages in the southern part of Yunnan province. Of 533,000 birds, 29,600 died after contracting the disease while the remaining 503,400 were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control, screening and zoning, and the disinfection of contaminated areas. The source of this outbreak remains unknown. +

+

+ + Libya (HPAI H5N1) + + . On March 12, health officials confirmed Libyaâ??s first outbreak of highly pathogenic H5N1 avian influenza. The outbreak occurred at a farm in the port city of Tubruq where 35 chickens and ducks were destroyed after 15 were found dead after contracting the virus. Various control measures have been executed to prevent the disease from spreading including stamping out, movement control, and sterilization. +

+

+ + Macao (LPAI H7) + + . The Civic and Municipal Affairs Bureau (IACM) and the Health Bureau (SSM) of Macao, a Special Administrative Region of the Peopleâ??s Republic of China, confirmed that samples of chicken imported from the mainland found at live bird markets tested positive for avian influenza. Once the H7 virus was identified at the market, all 7,500 birds were destroyed to prevent the disease from spreading. Additionally, the government has stopped the import of live poultry for 21 days. None of the 30 workers who came in contact with the contaminated poultry are showing flu-like symptoms, but will be observed for 10-days to ensure their well-being. Further characterization of the neuraminidase suptype is in progress. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese health officials confirmed that a vaccine-resistant variant of H5N1 has been confirmed in the Mekong Delta province. Officials are worried because this year, the vaccine is showing signs of weakness compared to other years, resulting in the death of 1,000 ducks and the infection of chickens that had already been vaccinated. Authorities are worried that the number of avian influenza may increase over the next couple of months due to cold weather and have set up control teams to monitor and evaluate the virus. +

+

+ + Avian Influenza in Canines + +

+

+ + South Korea (H5N8) + + . Koreaâ??s agriculture ministry reported an outbreak of H5N8 in the South Chungcheong province on March 14. Authorities confirmed that a farm dog became sick after eating infected chicken. This is the first avian influenza case in a mammal that Korea has seen to date. All of the chickens at the farm have been destroyed to prevent the disease from spreading. Further research on the effects of H5N8 strain virus in mammals will be valuable in the future. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + . Cambodian health officials confirmed three new human cases of H5N1. Two of the victims, a 3-year-old boy from Phom Penh and an 11-year-old boy from the Kampong Chhnang province, died after contracting the virus. The third victim, an 8-year-old boy from Kandal province is currently in stable condition. To date, there have been 8 outbreaks of H5N1 in Cambodia this year, three resulting in the death of a child. Officials are urging parents and guardians to keep their children away from sick and dead poultry and to wash their hands often as they are highly susceptible to the disease. +

+

+ News Update March, 7 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + China (LPAI H7N9) + + . The World Health Organization confirmed two H7N9 outbreaks in the south-central Province of Hunan on February 28. Both outbreaks were found during routine surveillance checks at live bird markets. All of the 160 susceptible birds were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control throughout the country, and disinfection of contaminated areas. +

+

+ + Netherlands (LPAI H5N1) + + . The World Health Organization and Holland’s Central Veterinary Institute confirmed an outbreak of low pathogenic H5N1 on February 27 in the Flevoland region. All 40,237 birds at the farm were destroyed to prevent further outbreaks. A 1km protection zone has been established and a follow-up report will be released within the next week. +

+

+ + South Korea (HPAI H5N8) + + . Multiple outbreaks of H5N8 have been confirmed throughout South Korea, including one at a government-run facility research center. In total, about 315,213 birds have been destroyed, including 6,000 chickens and ducks from the research center. The source of the outbreaks remains unknown and the country remains on high alert as they hope to prevent further outbreaks of the virus. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese health officials confirmed outbreaks of H5N1 in four provinces throughout the country: Hai Duong, Gia Lai, Soc Trang, and Hung Yen. Of 11,305 susceptible birds, 3,742 died while 7,563 were destroyed to prevent the disease from spreading. Various control measures are being applied including stamping out, movement control, and disinfection of contaminated areas. +

+

+ + Avian Influenza in Humans + +

+

+ + Hong Kong (LPAI H7N9) + + . On March 3, Hong Kong health officials confirmed two new H7N9 cases. The victims, a 5-year-old girl from the Guangdong province and a 2-year-old girl from the Zhejian province, have both been hospitalized and are being treated. The 2-year-old girl, who had visited mainland China with her family, went to a live-bird market on February 24 and is expected to make a full recovery. “Officials said they expect the prevalence of influenza to increase throughout the winter season and asked the public to take precautions against infection.” +

+

+ Additionally, two families are being isolated at Queen Elizabeth Hospital after a two-year-old boy was placed in a bed next to the girl from Zhejian who was infected with the H7N9 virus. The young girl has recovered, and she and her family have been sent home. The young boy and his family have to be isolated for 10 days to ensure that they do not have the virus. +

+

+ + China (LPAI H7N9) + + . The National Health and Family Planning Commission of China confirmed five new cases of H7N9 on February 23 and 24. Four of the victims, a 31-year-old man from the Guangdong province, a 76-year-old man from Guangdong province, a 75-year-old woman from Guangdong province, and a 33-year-old man from Guzngxi province, all have a history of exposure to poultry and are being treated in the hospital. The final victim, a 55-year-old woman from Guangdong province, is in critical condition and the source of her outbreak remains unknown. China has been hit especially hard with avian influenza over the past couple of months and the Chinese government continues to educate the public, increase surveillance methods, and monitor poultry that comes in and out of the country to prevent further outbreaks. +

+

+ News Update February 28, 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Cambodia (HPAI H5N1) + + . The Cambodian Ministry of Agriculture, Forestry and Fisheries confirmed two outbreaks of H5N1 have been confirmed in the provinces of Kampong Speu and Kandal. Of the 700 susceptible birds, 410 died after contracting the disease while the 290 remaining birds were destroyed to prevent the disease from spreading. Control measures being applied include stamping out, movement control, and disinfection of contaminated areas. +

+

+ + India (HPAI H5N1) + + . The Indian Veterinarian Authorities and the World Health Organization confirmed on February 6 that two house crows (Corvus splendens) tested positive for H5N1 in the state of Orissa (sometimes referred to as Odisha). The source of the outbreak remains unknown and the contaminated area has been disinfected. +

+

+ + Nepal (HPAI H5N1) + + . Nepalese health officials confirmed outbreaks of H5N1 at two poultry farms in the city of Itahari, in the Sunsari District in the Koshi Zone. All 1,552 chickens and 20 crates of eggs were destroyed to prevent the disease from spreading. No human cases have been identified in the country at this time. +

+

+ + Vietnam (HPAI H5N1) + + . Vietnamese health officials reported on February 26 that chickens have been infected with H5N1 in 21 different municipalities and provinces throughout Vietnam leading to the destruction of about 64,000 chickens. “Vietnam News Agency (VNA) reports the outbreak was attributed to the complicated weather in the first two months of the year, and the increase in shipping and trading of poultry during the recently-ended Lunar New Year (Tet) festival.” To prevent further outbreaks, border control checks will intensify and monitored closely in hopes to catch any infected birds before entering or leaving country. +

+

+ + China (LPAI H7N9) + + . The article ‘Role of poultry in spread of novel H7N9 influenza virus in China’ to be published in the Journal of Virology by Jackwood-Pantin and co-workers looks at the recent H7N9 outbreaks in China and provides experimental data to show that quail and chickens are susceptible to infection and shed large amounts of virus and are likely important in the spread of the virus to humans.” Other birds, including domestic and Muscovy ducks, Embden geese and mallards were also susceptible. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + . On February 20, the Ministry of Health and the World Health Organization confirmed the country’s third H5N1 case of the year. The victim, a four-year-old boy from Kratié Province, had been in contact with dead poultry six days before developing symptoms and is now “on the mend.” Earlier this year, about 350 birds died in the same village after contracting avian influenza. On 2/28/14, two additional H5N1 cases were reported from Kampong Cham province. Infection in two girls, aged 10 and 11 from different villages were confirmed. Both girls appeared to have had mild symptoms and have recovered. +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed two new outbreaks of H7N9 on February 26. The victims, a 65-year-old woman from Guangzhou and a two-year-old girl from Zhejiang, have both been hospitalized and the 65-year-old woman is in critical condition. Since October, 237 illnesses have been detected bringing the total number of human H7N9 cases in China to 373. +

+

+ The European Centre for Disease Prevention and Control as well as the Public Health Agency of Canada are conducting risk assessments and have reported that “the virus doesn't spread easily among people, though limited person-to-person transmission may occur when there is close contact, the update noted. The H7N9 virus bears close watching, though, because less severe cases have been seen in influenza-like illness surveillance, and the PHAC said it expects more cases to be reported as the flu season progresses.” +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_04_10.html b/data/flu-report-html/usgs_avian_flu_report_2014_04_10.html new file mode 100644 index 0000000..ac8ce96 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_04_10.html @@ -0,0 +1,2121 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Apr 10, 2014 +

+
+ + newer + +
+

+ News Update April, 4 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Bangladesh (HPAI H5N1?) + + . Bangladesh Health officials confirmed on March 28 that 7,000 chickens were culled at a government poultry farm in the district of Jessore after several birds were found dead and test results confirmed avian influenza. To prevent the disease from spreading further, 1,882 eggs, 1,300 kg of feed and 19 kg of vitamins were also destroyed. This outbreak has not been reported to OIE. +

+

+ + Laos (HPAI H5N1) + + . The veterinary authority in Laos confirmed an outbreak of highly pathogenic H5N1 in Nator Ngai in the region of Xayabury in north-west Laos on April 1. Of the 5,132 total birds, 457 died after contracting the disease while the remaining birds were culled to prevent the disease from spreading. “According to the report, the affected birds were introduced into the village one week before the outbreak.” This is the country’s first outbreak since December 2008. +

+

+ + North Korea (HPAI H5N1) + + . North Korean Health officials reported on April 9th that tens of thousands of poultry have either been culled or have died after contracting H5N1. The first outbreak was reported at a chicken farm in Pyongyang on March 21 and the virus has been spreading since. To prevent the disease from spreading further, an emergency quarantine commission has been created and an “emergency prevention situation” has been declared across the country. North Korea’s bird population suffered last year after being hit hard by the deadly flu virus. This is the country’s first outbreak of 2014. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed that three people are in critical condition and two are dead after contracting the H7N9 virus. The victims in critical condition range in age from 28-72 and are from the provinces Jiangsu, Guangdong, and Fujian. Details about the two deceased victims were not provided. So far this year, China has reported more than 273 human H7N9 cases, including at least 36 deaths. +

+

+ News Update March, 20 2014 +

+
+

+ + Avian Influenza in Dogs + +

+

+ + South Korea (HPAI H5N8) + + . Eleven additional dogs from two farms have tested positive for exposure to HPAI H5N8. The two farms are 80 km and 195 km south of the capital Seoul, but are both in the same province as the location of the farm that reported the first H5N8 dog case on March 11. None of the dogs have shown any symptoms. The dogs are being tested to determine if they can still spread the virus. +

+

+ + Avian Influenza in Poultry + +

+

+ + Cambodia (HPAI H5N1) + + . Cambodian health officials confirmed an outbreak of H5N1 in the capital city of Phnom Penh. Of the 200 susceptible birds, 83 died after becoming infected with the virus while the remaining 117 were destroyed to prevent the disease from spreading. The farm, where chickens were being raised for research at a nearby institute, has been disinfected. Other control measures being applied include stamping out and movement control. +

+

+ + Netherlands (LPAI H5N2) + + . The Dutch Ministry of Economic Affairs confirmed an outbreak of H5N2 in Bruchem, a village in the Dutch province of Gelderland. All 10,541 birds at the farm were destroyed to prevent the disease from spreading. Control measures being applied include a 1km protection zone, stamping out, and movement control. The source of the outbreak remains unknown. +

+

+ + Avian Influenza in Humans + +

+

+ + Cambodia (HPAI H5N1) + + . Cambodian health officials confirmed last week that a two-year-old girl from Kampot province died on March 14 after contracting H5N1. This is the country’s fourth bird flu death this year. About 90% of the chickens in the young girl’s village died this past month of bird flu, and officials believe that the young girl had direct contact with dead chickens before becoming sick. Officials are urging parents and guardians to keep their children away from dead or sick poultry, as they are highly susceptible to the disease. +

+

+ + China (LPAI H7N9) + + . The Chinese Centre for Health Protection of the Department of Health confirmed an outbreak of H7N9. The victim, a 78-year-old man, has been hospitalized. As of March 25, 389 human outbreaks of avian influenza have been confirmed on Mainland China. The hardest hit provinces include: Zhejiang (138 cases), Guangdong (93 cases), Jiangsu (44 cases), Shanghai (41 cases), and Fujian (21 cases). Disease surveillance, border control, and health education have all been increased in hopes to prevent further outbreaks. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_04_21.html b/data/flu-report-html/usgs_avian_flu_report_2014_04_21.html new file mode 100644 index 0000000..6fdfbd1 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_04_21.html @@ -0,0 +1,2054 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
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+ +
+ + older + + +

+ Avian Influenza Archive from Apr 21, 2014 +

+
+ + newer + +
+

+ News Update April, 17 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + North Korea (HPAI H5N1) + + . The North Korean veterinary authority and the World Organization for Animal Health (OIE) reported two outbreaks of H5N1 in the P'yongyang region on April 16th. The first outbreak confirmed 46,217 bird deaths. It is unknown at this time how many birds died at the site of the second outbreak. Control measures being applied include screening and zoning, movement control throughout the county, and quarantine. +

+

+ + Japan (HPAI H5) + + . Japanese health officials confirmed an outbreak of highly pathogenic H5 avian influenza earlier this week at a poultry farm in the Kumamoto prefecture. To prevent the disease from spreading, 168,000 chickens were culled. Additionally, authorities have been sanitizing areas around the two contaminated farms, disinfecting vehicles that come in and out of the region, and are testing birds at nearby farms to ensure the disease has not spread. This is the first case of avian influenza in Japan in three years. +

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_04_29.html b/data/flu-report-html/usgs_avian_flu_report_2014_04_29.html new file mode 100644 index 0000000..6132ee3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_04_29.html @@ -0,0 +1,2071 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Apr 29, 2014 +

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+ + newer + +
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+ News Update April, 29 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + North Korea (HPAI H5N1) + + . The North Korean Veterinary Authority confirmed one new outbreak of H5N1 this past week. The most recent outbreak, reported on April 22, was confirmed in the North Hwanghae Province. Of the 501 susceptible birds, 136 died after contracting the virus while the remaining 365 were destroyed to prevent the disease from spreading. Control measures being applied include movement control, stamping out, and screening and zoning. +

+

+ + Japan HPAI H5N8 + + . Japanese health officials confirmed an outbreak of highly pathogenic H5 avian influenza at a poultry farm in the Kumamoto prefecture is due to the H5N8 virus. To prevent the disease from spreading, 168,000 chickens has been culled. On April 22, the National Institute of Animal Health confirmed that this AI strain is the same as the strain that has been identified in South Korea. The two viruses are >99% identical genetically. While the country remains on high alert, they did report that there is little to no chance that this virus will have a direct affect on humans. +

+

+ + USA (LPAI H5) + + . The USDA Animal Plant Health Inspection Service (APHIS) and the California Department of Food and Agriculture (CDFA) reported laboratory tests came back positive for H5 avian influenza on April 22. The tests were initiated because a commercial Japanese quail layer flock was experiencing increased mortality. The source of the outbreaks remains unknown and the 116,000 susceptible birds have been placed under quarantine in hopes to prevent the disease from spreading. +

+

+ + Avian Influenza in Humans + +

+

+ + Taiwan ex China (LPAI H7N9) + + . Taiwan's Centers for Disease Control (CDC) confirmed on April 22 the third imported case of H7N9 avian flu since last April. The victim, a 44-year-old woman from China's Jiangsu province, arrived in Taiwan on April 17 as part of a tour group. On April 18 she developed flu like symptoms and was hospitalized on April 20. She is currently in critical condition. To date, none of the woman’s travel companions have developed flu like symptoms. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_05_02.html b/data/flu-report-html/usgs_avian_flu_report_2014_05_02.html new file mode 100644 index 0000000..804a4bf --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_05_02.html @@ -0,0 +1,2060 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
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+ Avian Influenza Archive from May 02, 2014 +

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+ News Update May, 2 2014 +

+
+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed an outbreak of H7N9 in the Anhui province on April 29. The victim, a 55-year-old man from Lu’an city, was hospitalized on April 26. His current condition is unknown at this time. This most recent outbreak brings the total number of H7N9 cases to 433 within the last year. +

+

+ + Taiwan (LPAI H7N9 ex China) + + . Taiwan’s Centers for Disease Control (CDC) confirmed on April 25 the fourth imported case of H7N9 avian flu since last April. The victim, a 39-year-old Taiwanese man, had recently visited Beijing and Jiangsu province, and showed flu-like symptoms after returning back to the island. He is currently being treated in an intensive care unit and no one that he has had close contact with have shown symptoms of the virus. +

+

+ + Spanish flu (H1N1) research + + . A new study led by the University of Arizona may answer the question as to why the 1918 flu pandemic killed so many young adults. Their studies show that “a human H1 virus that had been circulating among humans since around 1900 picked up genetic material from a bird flu virus just before 1918 and this became the deadly pandemic strain.” Additionally, this research may help “explain differences in patterns of mortality between seasonal flu and the deadly H5N1 and H7N9 bird flu viruses.” More information about this study can be found in the Proceedings of the National Academy of Science. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_05_12.html b/data/flu-report-html/usgs_avian_flu_report_2014_05_12.html new file mode 100644 index 0000000..2b623af --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_05_12.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 12, 2014 +

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+ News Update May, 12 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + Antarctica + + . In a recently published article in mBio, a journal of the American Society for Microbiology, scientists reported that a new kind of bird flu has been detected in Antarctica in Adelie penguins. After collecting blood samples from about 300 penguins, scientists found that about 3% of the birds were infected with the H11N2 avian influenza virus (AIV), and all of the viruses were quite similar to each other. While the virus does not cause the penguins to become ill, scientists are still puzzled as to “how often AIVs are being introduced into Antarctica, whether it is possible for highly pathogenic AIVs to be transferred there, what animals or ecosystems are maintaining the virus, and whether the viruses are being cryopreserved [when cells are preserved by freezing] during the winters.” +

+

+ + Avian Influenza in Poultry + +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed five new outbreaks of H7N9 in live bird markets in the Guangdong and Fujian provinces and the Ningxia Hui Autonomous Region of China during routine checks as part of the country’s national surveillance plan. To date, no bird deaths have been reported. The source of the outbreaks remains unknown and control measures being applied include movement control, screening and zoning, and disinfection. +

+

+ + Taiwan (HPAI H5N2) + + . The World Organization for Animal Health and Taiwanese health officials confirmed a case of H5N2 at a poultry market on May 2 during routine avian influenza screening tests. The infected bird came from a farm in Yunlin County. To prevent the disease from spreading, officials are monitoring and testing farms throughout the county and the infested farm has been disinfected. This is the country’s eighth case of H5N2. +

+

+ + USA (LPAI H5N8) + + . In a follow-up memo regarding the April 22 H5 confirmation in a commercial Japanese quail layer flock in California, the United States Department of Agriculture (USDA) and California Department of Food and Agriculture (CDFA) confirmed that the H5N8 virus was isolated. Additional observation and testing will continue and a surveillance and outreach plan has been implemented within a 10 km Control Area in hopes to prevent the disease from spreading. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H5N6) + + . Chinese health officials confirmed the first human case of H5N6 on May 7. The victim, a 49-year-old man from the Sichuan Province, had been in contact with dead, infected poultry and became seriously ill on April 22. Experts believe that this is an isolated case and the risk of human-to-human contact is very low. In hopes to prevent further outbreaks, over 1,300 birds throughout the province have been culled, poultry farms are being closely monitored, and health officials remain on high alert. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_05_16.html b/data/flu-report-html/usgs_avian_flu_report_2014_05_16.html new file mode 100644 index 0000000..1c48dce --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_05_16.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 16, 2014 +

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+ News Update May, 16 2014 +

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+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed two new cases of H7N9 this past week. The victims, a 50-year-old man and a 71-year-old man, both from Guangdong province, have been hospitalized and are being treated. So far this year, more than 120 people have been infected with the H7N9 virus. Guangdong province has been hit especially hard, with five deaths in April alone. Disease surveillance, health education, and travel warnings have been increased throughout the country in hopes to prevent further outbreaks. +

+

+ + Avian Influenza in Wild Birds + +

+

+ + China (LPAI H7N9) + + . The article Novel Avian Influenza A(H7N9) Virus in Tree Sparrow, Shanghai, China, 2013 published recently in the journal Emerging Infectious Diseases, found “high similarity” in the genetics of an avian influenza A(H7N9) virus from an apparently healthy tree sparrow in Shanghai and the H7N9 viruses from humans and poultry in the region. The authors suggest that there may be transmission from poultry to tree sparrows or vice versa and highlights the importance of tracking the influenza virus in a variety of species. +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_05_23.html b/data/flu-report-html/usgs_avian_flu_report_2014_05_23.html new file mode 100644 index 0000000..4f285f9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_05_23.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from May 23, 2014 +

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+

+ News Update May, 23 2014 +

+
+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + Health officials in Anhui Province, China, confirmed three new human cases of H7N9. Yang, a 40-year-old man from Taihu County, was confirmed on Monday to have contracted the virus, and he remains in critical condition. Two additional cases were also recently confirmed; Cao, a 69-year-old from Tunxi District of Huangshan City, and Han, a 58-year-old from Maanshan City, were also confirmed this week to have contracted H7N9. Both individuals are receiving treatment at local hospitals, and are in critical condition. The first cases of H7N9 bird flu were reported in China in March of 2013; to date, the country has reported over 200 human H7N9 cases. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_05_30.html b/data/flu-report-html/usgs_avian_flu_report_2014_05_30.html new file mode 100644 index 0000000..cc59d3e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_05_30.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 30, 2014 +

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+

+ News Update May, 30 2014 +

+
+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + . Chinese health officials confirmed that a 61-year-old man from Jinan, the capital of Shandong province, died after contracting the H7N9 virus on May 27. The man was admitted to the hospital on May 11 with flu-like symptoms and died earlier this week of acute respiratory distress and organ failure. The victim’s 33-year-old son was also confirmed to be infected with the H7N9 virus and is in critical condition. Details were not provided at this time as to whether this is a case of separate exposures to H7N9 or human-to-human transmission. In previous cases, the H7N9 virus has shown only limited ability to be transmitted between people. While no additional cases of H7N9 have been reported, those who came in close contact with either of the victims are being closely monitored. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_06_06.html b/data/flu-report-html/usgs_avian_flu_report_2014_06_06.html new file mode 100644 index 0000000..9358a85 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_06_06.html @@ -0,0 +1,2048 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 06, 2014 +

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+ News Update June, 6 2014 +

+
+

+ + Avian Influenza in Humans + +

+

+ + China (LPAH H7N9) + + . On June 4, the Chinese Centre for Health Protection (CHP) of the Department of Health (DH) confirmed four new human cases of H7N9 in the Jiangsu and Shandong provinces. Three of the victims, a 33-year-old man, a 51-year-old man, and a 51-year-old woman, have been hospitalized and are being treated. The fourth victim, a 61-year-old man who had contact with poultry, died. To date, 433 human cases of H7N9 have been confirmed in China. To prevent the disease from spreading further, Chinese officials have increased disease surveillance, health education, and travel warnings. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_06_17.html b/data/flu-report-html/usgs_avian_flu_report_2014_06_17.html new file mode 100644 index 0000000..3b93d68 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_06_17.html @@ -0,0 +1,2056 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 17, 2014 +

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+

+ News Update June, 17 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ A team of researchers led by Yoshihiro Kawaoka of the University of Wisconsin-Madison, has found that some genes from influenza viruses recently isolated from wild birds are very similar to those in the devastating 1918 pandemic flu virus, differing by only a few amino acids. The team’s study, recently published in Cell Host and Microbe, explores the risk that avian influenza virus’s emergence and adaptation to humans, and the potential for a resultant pandemic. According to senior study author Kawaoka, the report’s findings indicate the need for continued surveillance of influenza viruses in wild birds, as well as improved influenza vaccines and antivirals in preparation for a pandemic scenario. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + + The Centre for Health Protection recently reported four new human cases of H7N9. Two of the cases were reported in Jiangsu; a 51-year-old male and a 51-year-old female in the province were both hospitalized and are receiving treatment. The two remaining cases both occurred in Shandong; a 61-year-old man who contracted the avian flu from poultry exposure has since died, and a 33-year-old male from the province has been hospitalized and is receiving treatment. The Mainland of China has experienced a total of 433 human cases of H7N9. An official from the Department of Health reports that measures to prevent the spread of the virus are ongoing, and include enhanced disease surveillance, port health measures, boundary control points, and health education, particularly for travelers in and out of the affected areas. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_06_23.html b/data/flu-report-html/usgs_avian_flu_report_2014_06_23.html new file mode 100644 index 0000000..87b7281 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_06_23.html @@ -0,0 +1,2076 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 23, 2014 +

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+

+ News Update June, 23 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ A team of researchers led by Yoshihiro Kawaoka of the University of Wisconsin-Madison has found that some genes from influenza viruses recently isolated from wild birds are very similar to those in the devastating 1918 pandemic flu virus, differing by only a few amino acids. The team’s study, recently published in Cell Host and Microbe, explores the risk of avian influenza virus emergence and adaptation to humans, and the potential for a resultant pandemic. According to senior study author Kawaoka, the report’s findings indicate the need for continued surveillance of influenza viruses in wild birds, as well as improved influenza vaccines and antivirals in preparation for a pandemic scenario. +

+

+ + Avian Influenza in Poultry (H5N8) + +

+

+ + Korea + +
+ According to Daegu Metropolitan Government (DMG), the H5N8 virus was found in three chickens that recently died at a poultry farm in Okcheon. Since late last month, 100 chickens and 94 geese have died on the farm. All the surviving birds ? 13 geese and 388 chickens ? at the farm were culled. The farm apparently bought 107 baby geese from a farm in Hongseong on June 14. Authorities in Daegu are stepping up efforts to contain the disease by setting up checkpoints to disinfect vehicles and prohibiting poultry from being transported within three kilometers from where the outbreak was reported. +
+

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI/H7N9) + +
+ A 42-year-old man has died from the H7N9 bird flu strain in southern China's Guangdong province, provincial health authorities said on Tuesday. The patient lived in Jiangmen city and was confirmed to be infected on June 9, according to the provincial health and family planning committee. +

+

+ + Indonesia (H5N1) + +
+ The Indonesian Health Ministry has reported a second case and death from H5N1in 2014.The 33-year old victim was from Jakarta. This is the second case reported this year. A two-year-old boy from Central Java died on April 20, 2014. Previous to the boy’s death, some backyard chickens had died. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_07_21.html b/data/flu-report-html/usgs_avian_flu_report_2014_07_21.html new file mode 100644 index 0000000..27fd155 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_07_21.html @@ -0,0 +1,2061 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 21, 2014 +

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+ News Update July, 21 2014 +

+
+

+ + Avian Influenza in Poultry (HPAI/H5N1) + +

+

+ + United States + +
+ According to a Centers for Disease Control and Prevention (CDC) report, a sample of the low-pathogen H9N2 avian influenza virus sent to the U.S. Department of Agriculture Southeast Poultry Rresearch Laboratory (SEPRL) in Athens, GA was contaminated with the highly pathogenic H5N1 bird flu virus. The shipment was received in March, and personnel at SEPRL notified the CDC in May that the samples had been contaminated. The CDC confirmed that the samples had been unintentionally cross-contaminated and the contaminated sample and associated items at the Athens lab were destroyed. In addition to halting operations and shipments, the CDC has started an investigation to determine what led to the contamination. +
+

+

+ + Avian Influenza in Humans (LPAI/H7N9) + +

+

+ + China + +
+ One additional case of avian influenza H7N9 was recently reported in China’s Hunan province, according to Hong Kong health officials. This brings the total number of cases reported this year to 436. Local health authorities are working with the World Health Organization and other authorities to contain the virus, implementing disease prevention and control measures such as thermal imaging systems for body temperature checks on inbound travelers. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_08_01.html b/data/flu-report-html/usgs_avian_flu_report_2014_08_01.html new file mode 100644 index 0000000..ca16826 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_08_01.html @@ -0,0 +1,2049 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 01, 2014 +

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+ News Update July, 21 2014 +

+
+

+ + Avian Influenza in Poultry (HPAI/H5N8) + +

+

+ + South Korea + +
+ According to the South Joella Livestock Sanitation Office in Hampyeong County, the highly pathogenic H5N8 bird flu virus was discovered at a duck farm in Hampyeong. The virus was first detected on July 25 when officials from the sanitation office conducted a test before approving the farm’s products for sale, and was confirmed a few days later by the Ministry of Agriculture, Food, and Rural Affairs. Officials were surprised at the outbreak as it occurred in the middle of summer and influenza is typically transmitted during the cooler months of the year, but it came only a month after outbreaks in the city of Daegu and Gangwan-do province. In addition to immediately culling approximately 42,000 ducks at the farm and slaughtering an additional 2,000 chickens at nearby poultry farms, all farms within 10 kilometers were ordered to cease transporting animals for 30 days. +
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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_08_15.html b/data/flu-report-html/usgs_avian_flu_report_2014_08_15.html new file mode 100644 index 0000000..0044f50 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_08_15.html @@ -0,0 +1,2050 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 15, 2014 +

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+ News Update August, 15 2014 +

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+

+ + Avian Influenza in Poultry (HPAI/H5N6) + +

+

+ + Vietnam + +
+ According to the Vietnamese Ministry of Agriculture and Rural Development’s Veterinary Department, the highly pathogenic H5N6 bird flu virus was discovered in a herd of chickens in the Trang Dinnh District, in northern Lang Son province and in a flock of ducks in the Ky Anh District, which is in the central coastal province of Ha Tinh. In a report to the World Organization for Animal Health (OIE) on August 12, the department stated there were 15 deaths and the remaining 1965 birds were destroyed. Samples were also taken from surrounding poultry flocks, but all were negative for avian influenza. This is the first time the virus has been found in Vietnam. The source of the outbreak is still unknown but genetic analysis of samples taken from infected poultry shows that the strain is 99 percent identical to the strain that killed a 49-year-old man in the Chinese province of Sichuan in April this year. +

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+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_08_29.html b/data/flu-report-html/usgs_avian_flu_report_2014_08_29.html new file mode 100644 index 0000000..c45fbec --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_08_29.html @@ -0,0 +1,2056 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 29, 2014 +

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+ News Update August, 29 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Vietnam (HPAI/H5N6) + +
+ According to the Vietnamese Ministry of Agriculture and Rural Development’s Animal Health Department, the highly pathogenic A/H5N6 bird flu virus was detected in a flock of pheasants in the northern province of Lao Cai’s Bao Thang District. 498 birds out of a flock of 558 died and the rest were destroyed. In order to prevent bird flu from spreading, local authorities have taken measures such as strict quarantine regulations and inspections of poultry transport and trading. The strain was first detected in Vietnam in mid-August in chickens in the province of Lang Son and in a flock of ducks in the province of Ha Tinh. The source of the introduction of the H5N6 virus into Vietnam is thought to be either smuggling or wild bird migration. +
+

+

+ + USA (LPAI H7) + +
+ According to a World Organisation for Animal Health report, a new outbreak of the low pathogenic H7 bird flu virus was discovered at a breeding farm and hunting preserve in Salem County, New Jersey. Approximately 40,000 mallard ducks and 7,000 to 8,000 pheasants were affected. The source of the outbreak is unknown, and the USDA Animal Plant Health Inspection Service and the New Jersey Department of Agriculture are conducting a comprehensive epidemiological investigation of this event. The report did not state what will be the fate of the birds. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_09_10.html b/data/flu-report-html/usgs_avian_flu_report_2014_09_10.html new file mode 100644 index 0000000..56f69f4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_09_10.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 10, 2014 +

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+ News Update September, 10 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Vietnam. (HPAI H5N6) + + Two outbreaks of highly pathogenic avian flu of the H5N6 sub-type have been reported in central Vietnam in August 2014. The first was in Xuan My in Quang Tri province and began on 15 August and killed 350 birds of a flock of 1,550. The rest of the flock was destroyed. The second outbreak started on 23 August at Dong Nhon Nam in Quang Ngai province, where 200 birds died and the rest of the 1,110-bird flock has been destroyed. Control measures include limiting movement of birds inside the country; plus screening, disinfection, and culling on infected premises/establishments. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + The United Nations World Health Organization (WHO) said Thursday that China's National Health and Family Planning Commission has notified it of two new laboratory-confirmed case of human infection with avian influenza A(H7N9) virus in the country, including one death. The deceased patient was a 66-year-old woman from Xinjiang Uyghur Autonomous Region. She had onset of symptoms on July 14, was admitted to a hospital on July 17. She died on August 3. The patient had a history of exposure to live poultry. The other patient is a 53-year-old male, also from Xinjiang Uyghur Autonomous Region. He had onset of symptoms on August 5 and was admitted to a hospital on August 9. His symptoms continue to be mild. He has a history of exposure to live poultry. The Chinese government is continuing to take surveillance and control measures, reinforcing case management and treatment as well as conducting risk communication with the public. +

+

+ + Indonesia (HPAI H5N1) + + The Health Ministry has confirmed the second case of human infection from the avian influenza H5N1 in Indonesia this year, which previously claimed the life of a 2-year old toddler. The latest victimwas pronounced dead at Pondok Kopi Islamic Hospital, East Jakarta, in May. The ministry’s health research and development center head, Tjandra Yoga Aditama said, “the laboratory confirmed the H5N1 [infection], based on the real-time and conventional PCR [Polymerase Chain Reaction] diagnostics on the victim’s specimen.” It is the second laboratory-confirmed case of human infection of avian influenza following a case in Wonogiri, Central Java. Where on April 20, 2014, a 2-year-old toddler died of avian flu following exposure to live poultry. An inquiry by the Health Ministry found that prior to the child’s death; almost 70 chickens had died from apparent avian flu infection. Indonesia has witnessed 197 cases of humans infected with avian flu, making it the nation with the highest number of H5N1 human infection cases to date. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_09_30.html b/data/flu-report-html/usgs_avian_flu_report_2014_09_30.html new file mode 100644 index 0000000..137155a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_09_30.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 30, 2014 +

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+ News Update September, 26 2014 +

+
+

+ + Avian Influenza in Wild birds + +

+

+ + United States, Pennsylvania, Berks County. (LPAI in mosquitoes) + +
+ (9/9/2014) Department of Environmental Protection officials in Berks County, Pennsylvania reported that during the testing for West Nile virus in mosquitoes, one mosquito was found to be infected with the avian flu virus. No mosquitoes were found to be infected with West Nile during this year’s surveillance program in the county. West Nile virus staff are responding with additional surveillance and control, although spraying is normally suspended after Labor Day as cooler nights begin to kill off the mosquito population. Testing for infected mosquito larva in pools of standing water will continue. +
+

+

+ + Avian Influenza in Poultry + +

+

+ + Laos (LPAI H5N6) + +
+ (9/9/2014) An active surveillance program for avian influenza in five targeted provinces of northern Laos started in July 2014 with funding through FAO. As of 15 September 2014, the laboratory diagnostic results from the National Animal Health Laboratory (NAHL) have revealed that a poultry farm in Luangprabang where with one-day-old chicken and ducks were recently introduced has tested positive for the Low pathogenic avian influenza H5N6 virus. The Laotian veterinary authorities reported the detection on Monday, 15 September. According to the OIE, two birds have died out of a total of 200 birds. The positive samples will be sent to the Australian Animal Health Laboratory for nucleotide sequence characterization. +

+

+
+ + Vietnam (HPAI H5N6) + +
+ (9/17/2014) Health authorities in Vietnam's Central province of Quang Ngai on Tuesday culled 1,000 birds infected by H5N6 avian flu virus. The Veterinary Sub-department and the Cattle and Poultry Disease Prevention Steering Committee which conducted the culling said the birds belonged to a poultry farm in Tin An Dong commune, Quang Ngai city. The 40-day old flocks of birds were vaccinated earlier, but dozens had later tested positive for the virus. Local authorities have implemented a number of measures to prevent poultry-to-human transmission including culling, sterilization of the poultry farm, and vaccination of birds. +

+

+ (9/22/2014) More than 3,100 ducks were found to be infected with the bird flu virus A/H5N6 in farms in Vietnam's central Quang Nam province. A flock of 2,000 ducks at a farm in Tam My Dong commune in Nui Thanh district had tested positive for the virus last week, and more than 900 ducks in other poultry farms in the commune were then found dead en masse. Nui Thanh district's veterinary center, stated that they killed all the infected birds, burned their carcasses, sprayed chemicals at all farms in the commune and vaccinated 50 flocks of ducks. Additionally, veterinary emergency teams will work 24-hour shifts to monitor the virus in the area and all veterinary centers in the province's 18 districts are requested to prepare measures against the spread of the A/H5N6 virus. +

+

+ + South Korea (HPAI H5N8) + +
+ (9/24/2014) A suspected case of avian influenza was reported Wednesday at a duck farm in the southwestern city of Yeongam, the government said. An early response team has been dispatched to the farm located some 380 kilometers from the capital Seoul, according to the Ministry of Agriculture. Testing has detected the presence of HPAI H5N8. A total of 19,800 birds were destroyed following the detection of the infection with avian influenza virus. The outbreak comes only three weeks after the ministry declared the elimination of the disease that was first reported on Jan. 16. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_10_06.html b/data/flu-report-html/usgs_avian_flu_report_2014_10_06.html new file mode 100644 index 0000000..fe10e1f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_10_06.html @@ -0,0 +1,2061 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Oct 06, 2014 +

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+ News Update October, 6 2014 +

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+ + Avian Influenza in Poultry + +

+

+ + Russia (HPAI H5N1) + +
+ Russia has reported the first cases of a highly pathogenic bird flu virus in nearly two years in villages in Southern Russia, according to the World Organization for Animal Health (OIE) and the Russian Ministry of Agriculture. Infections with the highly pathogenic avian influenza (HPAI) H5N1 serotype of the virus were found in flocks of domestic chickens, geese, and ducks in two villages in the Altai Krai region near the border with Kazakhstan. In one village, 36 birds (species not specified) in a flock of 1952 had died and in the second village 286 birds died in a flock of 793 birds. Birds were destroyed in the two villages according to the OIE reports. The report further comments that hunter-harvested duck and geese “trophies” had been displayed in backyards where the domestic bird mortality subsequently occurred. The last occurrence of the HPAI H5N1 strain in Russia was in December 2012. +
+

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI/H5N1) + +
+ The Egyptian Minister of Health and Population, Dr. Adel Adawi, announced a human case of highly pathogenic avian influenza H5N1 virus in a 3-month-old girl from Giza. The onset of the illness was Monday, 9/22/ 2014, when the child presented symptoms of fever, sore throat, cough and vomiting and was taken to Abbasid Hospital. The girl’s parents reported that she had been exposed to dead birds. A throat sample was taken, analyzed, and confirmed positive for HPAI H5N1. The child was treated with Tamiflu and is reportedly in stable condition. According to the Health Ministry, this is the fourth human H5N1 AI case of 2014. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_10_15.html b/data/flu-report-html/usgs_avian_flu_report_2014_10_15.html new file mode 100644 index 0000000..9c65085 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_10_15.html @@ -0,0 +1,2061 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update October, 10 2014 +

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+ + Avian Influenza in Wild Animals + +

+

+ + Denmark + +
+ The Fisheries and Maritime Museum in Esbjerg reported a large number of dead seals found over the past week on the Danish island of Fano. Officials speculate that illness could have spread from the nearly 400 harbor seals that have been reported dead in western Sweden so far this year, ten times the annual average of 30 to 40. Two of the animals in Sweden tested positive for a form of bird flu, but the infection is not suspected to be the cause of death. Two seals in Denmark are also known to have died from bird flu recently. Samples were sent to the Technical University of Denmark's National Veterinary Institute in Copenhagen, where experts are particularly focused on seeing if the animals contracted PDV, a virus that wiped out a large number of seals in 1988 and 2002. PDV has been ruled out in the deaths of 100 seals on the Danish island of Anholt at the beginning of July. Examination of four of the seals found that they had died of bacterial pneumonia. +
+

+

+ + Avian Influenza in Poultry + +

+

+ + South Africa (H5N2/H7N1) + +
+ Subclinical cases of the low pathogenic H5N2 avian flu virus have been found in commercial ostriches on three farms in Western Cape Province between July 22 and September 1. The veterinary authority sent a follow up report on October 7 to the World Organization for Animal Health (OIE). A total of 1,647 of the 4,099 birds tested positive for the virus. None have died or been destroyed. +

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+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_10_24.html b/data/flu-report-html/usgs_avian_flu_report_2014_10_24.html new file mode 100644 index 0000000..d87884f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_10_24.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update October, 24 2014 +

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+ + Avian Influenza in Wild Animals + +

+

+ + Denmark (H10N7) + + The National Veterinary Institute of Denmark reported that they have found the low pathogenic H10N7 influenza virus from two seals from Anholt fjord in early July and again in September. Avian influenza was also found at Hvide Sande, Sædding, and Skalliingen on the west coast in October; the virus there has not been subtyped but is likely to be the same strain. The same virus may also have been detected in Sweden and Germany where large die offs of seals has also occurred. The seals probably contracted the virus through contact with wild birds or their droppings. There has been no evidence of the virus spreading from seal to seal, and no human infections identified in these outbreaks. This marks the first major outbreak of seal mortality that is due to influenza virus in Europe, whereas in North America, repeated outbreaks of influenza-caused mass mortality have occurred, and the most recent outbreak in 2011 was caused by an avian influenza H3N8 virus. +

+

+ + Avian Influenza in Poultry + +

+

+ + China (HPAI H5N3) + + The Chinese Animal Disease Control Center reported on 10/24/14 that highly pathogenic avian influenza H5N3 has been detected at the Yangjiashan Live Bird Market in Changsa, Hunan province. The virus was detected in one bird on September 15 but was only reported today. The report did not describe any mitigation measures at the market or the possible source of the outbreak. +

+

+ + Germany (H5N2) + + According to a World Organisation for Animal Health report, low pathogenic H5N2 avian influenza was discovered on a farm in Bonn, Germany. Of the 1,732 susceptible birds, 1 died and the rest were destroyed. No poultry or poultry products from the farm were moved to other regions of Germany or other countries. Other control measures taken include screening, zoning, and disinfection of affected premises. The source of the outbreak is unknown. +

+

+ + South Africa (LPAI and HPAI) + + According to Senzeni Zokwana, South African Agriculture, Forestry, and Fisheries Minister, the outbreak of avian influenza has cost the country about 4-billion South African Rand (USD $365,360,000) over the past few years through trade loss. Minister Zokwana said his department has reviewed the report of the World Animal Health Organisation (OIE) on the Performance of Veterinary Services (PVS). They have further requested the OIE to perform a gap analysis and are now awaiting the organisation’s response. +

+

+ + Avian Influenza in Humans + +

+

+ + China (H7N9) + + The Centre for Health Protection in China has learned of two additional cases of the low pathogenic H7N9 avian influenza. One was a 44-year-old woman in the Xinjiang Uygur Autonomous Region who died last month. The other is a seven-year-old girl in Beijing. This brings the total to 440 cases confirmed on the Mainland. The breakdown of cases by province is as follows: including Zhejiang (139 cases), Guangdong (109 cases), Jiangsu (56 cases), Shanghai (41 cases), Hunan (24 cases), Fujian (22 cases), Anhui (17 cases), Jiangxi (eight cases), Shandong (five cases), Beijing (five cases), Henan (four cases), Guangxi (three cases), Xinjiang Uygur Autonomous Region (three cases), Jilin (two cases), Guizhou (one case) and Hebei (one case). Clinical presentation of avian influenza in humans includes eye infection (conjunctivitis), flu-like symptoms (e.g. fever, cough, sore throat, muscle aches) or severe respiratory illness (e.g. chest infection). The more virulent forms [e.g. infection by avian influenza A (H5N1, H7N9 or H10N8) viruses] can result in respiratory failure, multi-organ failure and even death. Control measures have been taken at all boundary points, such as thermal imaging systems to check body temperature. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_11_03.html b/data/flu-report-html/usgs_avian_flu_report_2014_11_03.html new file mode 100644 index 0000000..f939320 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_11_03.html @@ -0,0 +1,2211 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update October, 30 2014 +

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+ + Avian Influenza in Wild Birds + +

+

+ + China (HPAI H5N2) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 9, two environment samples tested positive for highly pathogenic avian influenza H5N2 virus. One was collected at a wetland of Liao River, Panjin City, Liaoning province, and one was collected at Wang Lake in Yangxin district, Hubei province. +

+

+ + China (HPAI H5N6) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 12, one environmental sample from Dongting Lake in Junshan County, Hunan province, tested positive for highly pathogenic avian influenza H5N6 virus. +

+

+ + China (HPAI H5N8) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 12, highly pathogenic avian influenza H5N8 virus was identified in one environment sample from a wetland of Liao River, Xinglong County, Liaoning province. +

+

+ + Avian Influenza in Poultry + +

+

+ + China (HPAI H5N1) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 12, 18 cases of highly pathogenic avian influenza H5N1 virus in 16 locations were confirmed in chicken, duck, goose, and environmental samples. +

+

+ In Guangxi, 4 samples tested positive: one duck + from Guomao Market in Fangchenggang; one duck from Zhupai village in + Dongxing, Fangchenggang; one duck from Yinxing Agriculture Trade Market in + Chongzuo; and one duck from an unnamed agriculture trade market in Jingxi + County, Baise City. +

+

+ In Hunan province, 4 samples tested positive: one chicken from Xiangbei + Market in Yiyang City, one duck from Shima Live Bird Market and one duck and + one chicken from Yangjiashan Live Bird Market. Both markets are in Changsha + City. +

+

+ In Guizhou province, 3 samples tested positive: one chicken from Jinxing + Live Bird Market in Huadu District, Guangzhou; one chicken from West Street + Market and one chicken from Dongfang market in Anshun City. + In Yunnan province, 2 samples tested positive: one chicken from Qinglong + Village Live Bird Market in Kunming City and one duck from Taixing market in + Dali City. +

+

+ In Jiangsu province, 2 samples tested positive: one duck and an + environmental sample in Luoyang Agriculture Trade Market, Changzhou City. +

+

+ In Tibet, one chicken from Bayi Market in Lhasa tested positive. In Qinghai + province, one duck from Mojia Street Agriculture Trade Market in Xining City + tested positive. In Guangdong province, one goose from Heping sanniao + Wholesale Market in Zhuhai City tested positive. +

+

+ + China (HPAI H5N2) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 9, 10 cases of highly pathogenic avian influenza H5N2 virus were confirmed in chickens and ducks in 6 locations. +

+

+ In Ningxia, 4 chicken samples from a farm in Luhua village, Yinchuan, tested + positive, and 3920 were destroyed. +

+

+ In Heilongjiang province, 2 chicken samples from a farm in Zhaodong, Suihua, + tested positive, and 2333 birds were destroyed. +

+

+ In Hubei province, one chicken sample from Mingtang Market in Ezhou and one + duck sample from Zhonghuan Live Bird Market in Wuhan City tested positive. +

+

+ In Tibet, one chicken sample from Yaowangshan Market in Lhasa tested + positive. In Guangxi, one duck sample from an unnamed agriculture trade + market in Jingxi County, tested positive. +

+

+ + China (HPAI H5N3) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 15, highly pathogenic avian influenza H5N3 virus was identified in one duck with a sub-clinical infection at Yangjiashan Live Bird Market in Changsha City, Hunan province. +

+

+ + China (HPAI H5N6) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 12, 27 cases of highly pathogenic avian influenza H5N6 virus were identified in chickens, ducks, and geese in 23 locations. +

+

+ On a farm in Suibin County, Heilongjiang province, two birds tested + positive, 1421 were identified as susceptible, and 1421 were destroyed. +

+

+ In Guangxi, 6 samples tested positive: one duck from Xinbei Live Bird Market + in Da xin County, Chongzuo City; one duck and one goose from an unnamed + agriculture trade market in Jingxi County; one duck and one goose from + Guomao Market in Dongxing County, Fangchenggang City; and one duck from + Yingxing Agriculture Trade Market in Pingxiang County, Chongzuo City. +

+

+ In Hubei province, 4 samples tested positive: one duck from Jiarong Market + in Huangmei County, Huanggang City; one duck from a farm in Shanmu, Huangmei + County, Huanggang City; one duck from Zhonghuan Live Bird Market in Wuhan + City; and one duck from Mingtang Market in Eâ??zhou City. +

+

+ In Guangdong province, 3 samples tested positive: one chicken from + Minghai-sanniao Market in Zhuhai City; and one duck and one goose from + Jixing Live Bird Market in Huadu District, Guangzhou. +

+

+ In Chongking, 2 samples tested positive: one duck from Panlong Agriculture + Trade Market in Chonqing City, and one duck from Nanjin Street Agriculture + Trade Market in Chongqing City. +

+

+ In Guizhou province, 2 samples tested positive: one chicken from West Street + Market in Xixiu District, Anshun City; and one duck from an agriculture + production market in Weining County, Bijie City. +

+

+ In Zhejiang province, 2 samples tested positive: one duck from a farm in + Jiantang Village, Changxing County, Huzhou City; and one laying duck from a + farm at Renhe Street, Yuhang district, Hangzhou City. +

+

+ In Yunnan province, one duck sample from Qinglong Village Live Bird Market + in Panlong District, Kunming City, tested positive. In Fujian province, one + duck sample from Gaoqi Wholesale Market in Xiamen City tested positive. In + Tibet, one duck sample from Bayi Market in Lhasa City tested positive. In + Anhui province, one duck sample from Sanxutang Mmarket in Shucheng County, + Lu'an City, tested positive. In Hunan province, one duck sample from + Qiaodong Market in Xiangyin County, Yueyang City, tested positive. In Hebei + province, one duck sample from Shangyao Market in Xisaishan District, + Huangshi City, tested positive. +

+

+ + China (HPAI H5N8) + + The Chinese Animal Disease Control Centre reported on October 24 that on September 12, highly pathogenic avian influenza H5N8 virus was identified in one duck with a sub-clinical infection at Liuhe slaughterhouse in Dawa County, Panjin City, Liaoning province. +

+

+ In all cases the sources of the outbreaks were not identified. Control measures applied included quarantine, movement control inside the country, screening, zoning, disinfection of infected premises, and dipping/spraying. There was no vaccination or treatment of affected animals. +

+

+ + Indonesia (HPAI H5N1) + + Gorontolo Province's administration's quick response unit for infectious animal diseases culled thousands of chickens belonging to Gorontalo residents on October 25. This followed a suspected outbreak in which dozens of chickens in various parts of the province died, with the first case recorded on September 25 in Gorontalo City and spreading across the city and to Gorontalo regency and Bone Bolango. The quick response unit has culled 7,696 broiler chickens, free-range chickens, and quails since the end of September when it detected the first suspected cases. Three of the six regions in Gorontalo province are still declared free of suspected bird-flu cases: Boalemo regency, Pohuwato, and North Gorntalo. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + China's National Health and Family Planning Commission notified the World Health Organization of two new confirmed cases of humans infected with avian influenza A(H7N9) virus, one of whom died, the WHO reported on October 29. The patient who died, a 44-year-old woman from Urumqi City in Xinjiang Uyghur Autonomous Region, had a history of exposure to live poultry. She developed symptoms on September 4, was admitted to a hospital on September 7, and died on September 9. The second case, a 7-year-old girl from Chaoyang District in Beijing Municipality, developed symptoms on September 16, but her condition was mild and she was not hospitalized. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_11_12.html b/data/flu-report-html/usgs_avian_flu_report_2014_11_12.html new file mode 100644 index 0000000..6b13a52 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_11_12.html @@ -0,0 +1,2062 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update November, 6 2014 +

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+ + Avian Influenza in Poultry + +

+

+ + Germany (HPAI H5N*) + + Veterinary staff culled approximately 31,000 turkeys in Heinrichswalde, in the northeastern state of Mecklenburg in western Pomerania, that were found to have the highly pathogenic H5N8 influenza virus. 1800 birds died and at least one turkey on the farm tested positive for the virus, according to a spokesperson at the Friedrich-Loeffler Institute (FLI). The HPAI H5N8 virus has never been found before in Germany, but had previously been found in South Korea where it infected at least 28 farms and lead to the culling of 14 million birds in early 2014. +

+

+ Examinations on 1,000 animals were conducted in a three-kilometer restricted area, while a ten-kilometer "observation area" was also established. Poultry within a 50-kilometre radius may no longer be kept outside their pens. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + A 58-year-old woman in Jiangsu province who bought and slaughtered a chicken is now in critical condition, suffering from H7N9 avian influenza. The ban on selling live poultry in the cities of Guangzhou, Foshan and Shenzhen will be expanded to the entire province of Guangdong. Imports from mainland China to Hong Kong are being strictly monitored to prevent further spread of the virus. +

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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_11_18.html b/data/flu-report-html/usgs_avian_flu_report_2014_11_18.html new file mode 100644 index 0000000..3eded74 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_11_18.html @@ -0,0 +1,2078 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Nov 18, 2014 +

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+ News Update November, 18 2014 +

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+ + Avian Influenza in Wild Birds + +

+

+ + Japan (HPAI H5N8) + + The Environment Ministry confirmed the discovery of highly pathogenic avian influenza virus (H5N8) today from two wild bird environmental samples collected on November 3rd in Yasugi, Shimane Prefecture in western Japan. The H5N8 strain was detected on November 3rd in two samples of droppings from migratory tundra swans (Cygnus columbianus). This is the same strain of avian influenza that was detected in South Korea in January and Kumamoto Prefecture Japan in April of this year. In 2010, the highly pathogenic H5N1 strain of avian influenza was first detected in wild bird fecal samples before outbreaks in farms and wild birds throughout Japan. HPAI H5N8 was reported last week in a farm in Germany and analysis of the hemagglutinin and neuraminidase RNA segments show that the German virus is closely related to the virus in South Korea. Whether the Japan H5N8 is related to the same group is not known at this time. The source of the introduction of the HPAI H5N8 virus into Germany is unknown at this time, but the finding of HPAI H5N8 in wild bird fecal samples in Japan might support one mechanism of introduction. The Prefecture is warning all local poultry farms to take preventative measures against infection. +

+

+ News Update November, 6 2014 +

+
+

+ + Avian Influenza in Poultry + +

+

+ + Germany (HPAI H5N*) + + Veterinary staff culled approximately 31,000 turkeys in Heinrichswalde, in the northeastern state of Mecklenburg in western Pomerania, that were found to have the highly pathogenic H5N8 influenza virus. 1800 birds died and at least one turkey on the farm tested positive for the virus, according to a spokesperson at the Friedrich-Loeffler Institute (FLI). The HPAI H5N8 virus has never been found before in Germany, but had previously been found in South Korea where it infected at least 28 farms and lead to the culling of 14 million birds in early 2014. +

+

+ Examinations on 1,000 animals were conducted in a three-kilometer restricted area, while a ten-kilometer "observation area" was also established. Poultry within a 50-kilometre radius may no longer be kept outside their pens. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + A 58-year-old woman in Jiangsu province who bought and slaughtered a chicken is now in critical condition, suffering from H7N9 avian influenza. The ban on selling live poultry in the cities of Guangzhou, Foshan and Shenzhen will be expanded to the entire province of Guangdong. Imports from mainland China to Hong Kong are being strictly monitored to prevent further spread of the virus. +

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+ Page Last Modified: +May 19, 2016 +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_11_25.html b/data/flu-report-html/usgs_avian_flu_report_2014_11_25.html new file mode 100644 index 0000000..69e25b0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_11_25.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Nov 25, 2014 +

+
+ + newer + +
+

+ News Update November, 21 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ According to a study done by researchers at the National Institute of Allergy and Infectious Diseases in Bethesda, Maryland, flu viruses expressing the low pathogenicity avian H1, H6, H7, H10 or H15 hemagglutinins (genes that encode the major surface protein for the virus) led to fatal infections in mice and caused more cell damage in normal human lung cells grown in culture compared to avian influenza viruses with other subtypes. The H1 subtype hemagglutinin was identified as a key factor in the so-called â??Spanish fluâ? in 1918, which resulted in approximately 50 million deaths. In 2013-2014 there have been close to 400 cases of avian influenza H7N9 infections in people in China, along with small numbers of severe human infections with H10N8 and H6N1 subtypes. Until more is understood about how flu viruses cross from animals to humans and spread, more research is needed into producing a more broadly protective "universal" flu vaccine that may ultimately offer the best protection against future pandemics, said senior study author Jeffery K. Taubenberger +

+

+ + Japan + + The Environment Ministry reported that a dead duck found Thursday in Koto Ward, Tokyo, has tested positive in a genetic test for an avian influenza virus. A further test will be conducted by the National Institute of Animal Health to determine whether the virus is highly pathogenic. If so, it will be the first bird flu case in Tokyo. The ministry has designated a 10-km radius from where the bird was found as a priority monitoring zone. +

+

+ A whooper swan found Wednesday in Kurihara City, Miyagi Prefucture, has tested positive for avian influenza, the Environment Ministry reported. The ministry has decided to test more wild birds in order to determine whether they are carrying the highly pathogenic virus, and has asked all citizens to avoid contact with wild birds. +

+

+ + Avian Influenza in Poultry + +

+

+ + The Netherlands (HPAI H5N8) + + Dutch authorities have identified the highly pathogenic H5N8 avian influenza at a poultry farm in the village of Hekendorp. 150,000 hens were destroyed. In March, some 10,000 chickens were destroyed after bird flu was found at a farm in the eastern province of Gelderland. This is the same strain that prompted massive culls in Asia. +

+

+ A second case of bird flu was detected on a farm at Ter Aar containing 43,000 chickens, NVWA said Thursday. The outbreak was of the H5 strain, but tests are still underway to determine if it was of the highly pathogenic variety. Authorities have placed a 10 km cordon around the farm and are testing nearby farms. The farm will be disinfected and the chickens destroyed. A 72 hour nationwide ban on the transport of all poultry and related products has also been put into place. +

+

+ + UK (HPAI H5N8) + + According to the U.K. Department for Environment, Food and Rural Affairs, the highly pathogenic H5N8 was discovered at Nafferton Farm in East Yorkshire. 6,000 Pekin ducks were culled and a two mile restriction zone as well as a six mile surveillance zone has been set up around the farm. The two most likely causes of the infection are either through wild migratory birds spreading the virus, or through droppings from infected birds being transferred by vehicle movements. This marks the bird flu case in the U.K. since 2008. The risk of human infection is low, as the H5N8 strand has never been found in humans. +

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI H5N1) + + Egyptian health officials reported that a 19 year old woman died on Monday of the highly pathogenic H5N1 bird flu at a hospital in the southeast region of Assiut. The woman raised domestic chickens, which is thought to be the source of the infection. +

+

+ A second death occurred Tuesday, of a 30-year-old woman in the southern province of Minya. This brings the number of confirmed cases in the country this year to seven, three of which died. In Egypt, most cases have been identified in rural areas, where villagers tend to raise poultry in their homes, thus increasing exposure to infected birds. Since 2006, there have been 180 cases of bird flu, 66 of which were fatal. The ministry said it has taken measures to monitor the disease at all hospitals countrywide and to build a stockpile of the Tamiflu medicine. It has also set up isolation units at hospitals and is undertaking training for medical teams. +


+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_11_26.html b/data/flu-report-html/usgs_avian_flu_report_2014_11_26.html new file mode 100644 index 0000000..34f4a50 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_11_26.html @@ -0,0 +1,2115 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Nov 26, 2014 +

+
+ + newer + +
+

+ News Update November, 27 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ + Germany (HPAI H5N8) + + According to the agriculture department there, another case of highly pathogenic H5N8 avian influenza has been confirmed in the German state of Meckleburg-Western Pomerania. The virus was detected in a common teal during surveillance of wild birds in the Vorpommern Rugen region. This is the first detection of HPAI H5N8 in wild birds in Europe and lends support to migratory birds as one possible route of introduction. In order to prevent the spread of the disease to poultry, Dr. Till Backhaus, the stateâ??s Minister for Agriculture, the Environment and Consumer Protection, has called for all domestic birds to be kept indoors, and for poultry producers to report any signs of disease and take precautions to keep wild birds away from food, water, and other materials designated for their birds. +

+

+ + Avian Influenza in Poultry + +

+

+ + India (HPAI H5N1) + + According to the Kerala Animal Husbandry Department, the death of around 10,000 ducks in the Kuttanad area of Allapuzha and Kottayam districts was due to avian influenza. The strain was confirmed Monday by the High Security Animal Disease Laboratory in Bhopal to be the H5 subtype and several news outlets now say it is HPAI H5N1. The Animal Husbandry Department plants to kill all birds in the four affected villages to prevent the disease from spreading. As a further precaution, Health minister V.S. Sivakumar said vaccines will be distributed free of cost to those in affected areas. HPAI H5N1 was first reported in India in 2006 and the most recent outbreak was in two house crows that were found dead in Orissa in January of this year. +

+

+ News Update November, 21 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ According to a study done by researchers at the National Institute of Allergy and Infectious Diseases in Bethesda, Maryland, flu viruses expressing the low pathogenicity avian H1, H6, H7, H10 or H15 hemagglutinins (genes that encode the major surface protein for the virus) led to fatal infections in mice and caused more cell damage in normal human lung cells grown in culture compared to avian influenza viruses with other subtypes. The H1 subtype hemagglutinin was identified as a key factor in the so-called â??Spanish fluâ? in 1918, which resulted in approximately 50 million deaths. In 2013-2014 there have been close to 400 cases of avian influenza H7N9 infections in people in China, along with small numbers of severe human infections with H10N8 and H6N1 subtypes. Until more is understood about how flu viruses cross from animals to humans and spread, more research is needed into producing a more broadly protective "universal" flu vaccine that may ultimately offer the best protection against future pandemics, said senior study author Jeffery K. Taubenberger +

+

+ + Japan + + The Environment Ministry reported that a dead duck found Thursday in Koto Ward, Tokyo, has tested positive in a genetic test for an avian influenza virus. A further test will be conducted by the National Institute of Animal Health to determine whether the virus is highly pathogenic. If so, it will be the first bird flu case in Tokyo. The ministry has designated a 10-km radius from where the bird was found as a priority monitoring zone. +

+

+ A whooper swan found Wednesday in Kurihara City, Miyagi Prefucture, has tested positive for avian influenza, the Environment Ministry reported. The ministry has decided to test more wild birds in order to determine whether they are carrying the highly pathogenic virus, and has asked all citizens to avoid contact with wild birds. +

+

+ + Avian Influenza in Poultry + +

+

+ + The Netherlands (HPAI H5N8) + + Dutch authorities have identified the highly pathogenic H5N8 avian influenza at a poultry farm in the village of Hekendorp. 150,000 hens were destroyed. In March, some 10,000 chickens were destroyed after bird flu was found at a farm in the eastern province of Gelderland. This is the same strain that prompted massive culls in Asia. +

+

+ A second case of bird flu was detected on a farm at Ter Aar containing 43,000 chickens, NVWA said Thursday. The outbreak was of the H5 strain, but tests are still underway to determine if it was of the highly pathogenic variety. Authorities have placed a 10 km cordon around the farm and are testing nearby farms. The farm will be disinfected and the chickens destroyed. A 72 hour nationwide ban on the transport of all poultry and related products has also been put into place. +

+

+ + UK (HPAI H5N8) + + According to the U.K. Department for Environment, Food and Rural Affairs, the highly pathogenic H5N8 was discovered at Nafferton Farm in East Yorkshire. 6,000 Pekin ducks were culled and a two mile restriction zone as well as a six mile surveillance zone has been set up around the farm. The two most likely causes of the infection are either through wild migratory birds spreading the virus, or through droppings from infected birds being transferred by vehicle movements. This marks the bird flu case in the U.K. since 2008. The risk of human infection is low, as the H5N8 strand has never been found in humans. +

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI H5N1) + + Egyptian health officials reported that a 19 year old woman died on Monday of the highly pathogenic H5N1 bird flu at a hospital in the southeast region of Assiut. The woman raised domestic chickens, which is thought to be the source of the infection. +

+

+ A second death occurred Tuesday, of a 30-year-old woman in the southern province of Minya. This brings the number of confirmed cases in the country this year to seven, three of which died. In Egypt, most cases have been identified in rural areas, where villagers tend to raise poultry in their homes, thus increasing exposure to infected birds. Since 2006, there have been 180 cases of bird flu, 66 of which were fatal. The ministry said it has taken measures to monitor the disease at all hospitals countrywide and to build a stockpile of the Tamiflu medicine. It has also set up isolation units at hospitals and is undertaking training for medical teams. +


+

+ + Back + +

+

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_12_09.html b/data/flu-report-html/usgs_avian_flu_report_2014_12_09.html new file mode 100644 index 0000000..d43aa49 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_12_09.html @@ -0,0 +1,2118 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 09, 2014 +

+
+ + newer + +
+

+ News Update December 4, 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ + Japan (HPAI H5N8) + + Japanese authorities confirmed that the highly pathogenic avian influenza type H5N8 was discovered in the Tottori Prefecture in Japan from duck fecal samples taken on November 18. Japan's Ministry of the Environment has established a 10-kilometer monitoring zone to prevent spread of the diseases. The Ministry is also investigating to determine if there are any dead or diseased birds affected by the virus. Experts think the source of the virus could be birds migrating from South Korea, where a similar outbreak occurred earlier this year. In the past few weeks, the same strain was found in wild bird droppings in the prefectures of Shimane and Chiba. No infections of poultry have been detected in any of the three prefectures. +

+

+ The Ministry has also announced that the virus was detected in a White-naped crane at a nature preserve in Izumi City in Kagoshima Prefecture. The 245 hectare preserve hosts the overwintering of more than 10,000 (80% of the world population) Hooded and White-naped cranes. Both species are listed as Vulnerable. Available information did not indicate whether the crane was healthy or had died at the time of sampling. +

+

+ + The Netherlands (HPAI H5) + + According to researchers from the Erasmus Medical Centre in Rotterdam, fecal samples from two wigeons tested positive for the highly pathogenic H5 strain of avian influenza. It is not yet known what the N type is, but sequence analysis so far by the researchers shows the wigeon virus is "genetically almost identical" to those in the five other outbreaks in the Netherlands over the past two weeks at poultry farms. Poultry sector organization Nepluvi said that the government needs to change its approach now that it seems wild duck are spreading the disease. In particular, they advocate that the rules on moving poultry and eggs should be relaxed in areas without large expanses of water where ducks could congregate. But experts say the finding of the virus in wild birds does not necessarily mean that wild birds were the way that the H5N8 virus was introduced as wild birds could have been infected from contaminated materials carried into the fields from the farms. +

+

+ + Avian Influenza in Poultry + +

+

+ + The Netherlands (HPAI H5N8) + + Dutch animal health authorities have detected the highly pathogenic H5N8 avian influenza virus at a poultry farm in the western municipality of Zoeterwoude. 28,000 hens were destroyed at the location and another 50,000 birds will be destroyed at a nearby farm as a precautionary measure. This follows the culling of around 300,000 birds at four other poultry farms. Testing indicates that the infections were not all from the same source. Authorities are testing poultry at nearby farms, and transport restrictions were imposed two weeks ago that affect around 2,000 poultry businesses in the sector. Some experts think that wild birds emigrating from Asia carried the disease to Europe. +

+

+ + Canada (HPAI H5) + + British Columbia's Ministry of Agriculture and the Canadian Food Inspection Agency reported that avian influenza H5 was found on two farms in the Fraser Valley, a turkey farm in Abbotsford and a broiler breeder in Chilliwack. Initial tests were conducted December 1, and further tests are being done to determine the exact strain of the virus. The two farms are about 8 kilometers apart and there are no obvious connections identified so far. Both reported sudden deaths of birds over the weekend. About half of the 11,000 turkeys at the Abbotsford operation have already died, as well as about 1,000 of the 7,000 chickens at the Chilliwack operation. The two farms are under quarantine and the remaining birds will be destroyed. Two other farms located between the two initial locations have been placed under quarantine because of a history of recent movements of equipment and materials from the affected farms. The Canadian Food Inspection Agency is establishing a surveillance zone for more testing, and surrounding farms are tightening movement controls. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + Guangdong Province's health and family commission reported that a 31-year-old woman from the city of Dongguan was confirmed on November 28 to be infected with H7N9 avian influenza virus. The patient is being treated in the provincial capital, Guangzhou, and is in critical condition. This is the first case in the province this winter of human infection with the virus. The Chinese Ministry of Health reported that a 60-year-old woman from Jianxing province and a 27-year-old man from Fujian are also infected with H7N9. Since March 2013, when the H7N9 avian influenza virus first infected three people, more than 450 people in China have been infected, 175 of whom have died. +

+

+ + Egypt (HPAI H5N1) + + The Egyptian health ministry reported on December 1 four cases of H5N1, three of which were fatal. A 29-year-old woman and a 40-year old man died in Upper Egypt's Minya Governorate, the man as he reached the hospital. A two-year-old girl in Minya recovered. A 25-year-old woman in Beni Suef Governorate died after being admitted to the hospital and treated with Tamiflu. On December 3, the health ministry reported two new cases of H5N1, one of which was fatal. In Minya Governorate, a 26-year-old man who had been exposed to birds was hospitalized on November 30, put on a ventilator and treated with Tamiflu, and died on December 1. In Sohag Governorate, a 33-year-old woman was admitted to a private hospital on November 28 and given Tamiflu, transferred to a hospital in the city of Sohag, and was released the next day. Her condition is stable. Egypt's hospitals entered a state of emergency in mid-November when two avian influenza deaths were reported in one week. In 2014 so far 14 avian influenza cases have been reported. +

+

+ News Update November, 27 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ + Germany (HPAI H5N8) + + According to the agriculture department there, another case of highly pathogenic H5N8 avian influenza has been confirmed in the German state of Meckleburg-Western Pomerania. The virus was detected in a common teal during surveillance of wild birds in the Vorpommern Rugen region. This is the first detection of HPAI H5N8 in wild birds in Europe and lends support to migratory birds as one possible route of introduction. In order to prevent the spread of the disease to poultry, Dr. Till Backhaus, the state's Minister for Agriculture, the Environment and Consumer Protection, has called for all domestic birds to be kept indoors, and for poultry producers to report any signs of disease and take precautions to keep wild birds away from food, water, and other materials designated for their birds. +

+

+ + Avian Influenza in Poultry + +

+

+ + India (HPAI H5N1) + + According to the Kerala Animal Husbandry Department, the death of around 10,000 ducks in the Kuttanad area of Allapuzha and Kottayam districts was due to avian influenza. The strain was confirmed Monday by the High Security Animal Disease Laboratory in Bhopal to be the H5 subtype and several news outlets now say it is HPAI H5N1. The Animal Husbandry Department plants to kill all birds in the four affected villages to prevent the disease from spreading. As a further precaution, Health minister V.S. Sivakumar said vaccines will be distributed free of cost to those in affected areas. HPAI H5N1 was first reported in India in 2006 and the most recent outbreak was in two house crows that were found dead in Orissa in January of this year. +

+
+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_12_16.html b/data/flu-report-html/usgs_avian_flu_report_2014_12_16.html new file mode 100644 index 0000000..3ede690 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_12_16.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 16, 2014 +

+
+ + newer + +
+

+ News Update December, 12 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ A total of 17 birds from a small-scale mortality event at Wiser Lake, Whatcom County, Washington have been tested at the USGS National Wildlife Health Center (NWHC). Four of these birds were positive for H5 avian influenza by RT-PCR and today, highly pathogenic avian influenza virus H5N2 and H5N8 have been confirmed in a northern pintail and a gyrfalcon by the USDA National Veterinary Services Laboratories. The captive gyrfalcon had hunted in the same area and fed on a free-living wigeon. That bird subsequently died and the carcass was submitted to NWHC for testing. The northern pintail was among the mallards, American wigeon, northern shoveler, and trumpeter swan that died in the area. Wiser Lake has a history of aspergillus and lead poisoning. Aspergillus was present in at least five of the birds thus far, but the northern pintail was also infected with HPAI H5N2. +

+

+ According to the Scientific Task Force on Avian Influenza and Wild Birds, an expert panel co-convened by the United Nations Environment Programme/Convention on Migratory Species and the Food and Agriculture Organization, the attention regarding the role of wild birds in spreading highly pathogenic H5N8 could distract from effective disease control. The Task Force said that regardless of the source of the introduction (wild birds or human-mediated), the focus should be on disease control actions at affected farms in order to prevent further spread. The Task Force suggested that killing wild birds or spraying disinfectants on wild bird habitats are not advisable and such measures are contrary to conservation commitments accepted by Contracting Parties to both the Convention on Migratory Species and the Ramsar Convention. +

+

+ + Avian Influenza in Poultry + +

+

+ + Canada (HPAI H5N2) + + According to Canadian Food Inspection Agency, the highly pathogenic avian influenza (HPAI) H5N2 virus has now been detected at 9 locations on 10 farms with over 233,800 birds dead or set to be destroyed. The latest farm is an egg laying operation in Langley, British Columbia, which is within the Vancouver metropolitan area. Control measures such as quarantine and screening are in place. In addition, eight countries have placed restrictions on poultry and poultry products from Canada. The source of the virus in the outbreaks is unclear, although several of the farms had received chickens from a previously infected facility. Last Friday, the Canadian Food Inspection Agency said that the complete genome of the H5N2 virus has been characterized and was found to contain 5 RNA segments from the Eurasian HPAI H5N8 and 3 segments from North American lineage avian influenza viruses. In particular, the H5 segment belongs to the HPAI H5N1 clade 2.3.4.6 lineage. HPAI H5N8 has been found in wild birds and poultry outbreaks in China, South Korea, Japan, Germany, the Netherlands and the United Kingdom, and now one of its descendants has been found in Canada. It remains unclear where the HPAI H5N2 virus originated, but migratory birds may have had a role in the spread of the HPAI H5N8 in Asia and Europe and might play a similar role here. +

+

+ + China (HPAI H7N9) + + According to officials, environmental testing of poultry stalls at live markets in Zhuhai has revealed a 40% contamination rate of the highly pathogenic avian influenza H7N9 virus. City CDC officials warn market managers to take precautions, including wearing masks, gloves, and boots, and using cleaning and disinfecting measures. Guangzhou, Shenzhen, and Foshan Provinces have piloted centralized slaughtering, cold chain distribution, and fresh listing. CDC Deputy Director Li Yurong has suggested Zhuhai should implement these procedures as soon as possible. Unlike many of the other strains of avian influenza, the H7N9 virus generally produces no symptoms in birds, and can spread silently through poultry populations, often only being noticed when a human becomes infected. A recent study of human cases in Shanghai found that people with chronic disease or frequent visits to wet markets are significantly correlated with infection of H7N9. +

+

+ + Vietnam (HPAI H5N1) + + According to the Provincial Department of Agriculture and Rural Development, 177 chickens in Mekong Delta Province of Tra Vinh have tested positive for the highly pathogenic H5N1 strain of avian influenza. Tra Vinh People’s Committee has instructed agencies to implement prevention measures such as vaccinating livestock and poultry, sterilizing farms, and alerting residents about the outbreak. In addition, checkpoints have been set up along roads and waterways crossing infected communes and quarantine officials have been sent to monitor trade and transport of poultry and livestock. In the first quarter this year, Tra Vinh reported 25 cases of avian influenza in 12 communes with 16,500 chickens dead. +

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI H5N1) + + Authorities at the Egyptian Ministry of Health confirmed two cases of the highly pathogenic H5N1 strain of avian influenza in a two-year-old and a 33-year old woman from Sohag, governorate. The child was admitted to a hospital with a fever, cough, and sore throat, and is currently in stable condition. The woman has died but no details are currently available. This marks the 16th case of H5N1 human infection and the 8th death reported in 2014. The Ministry has issued warnings about the risks of trading live birds and has started bird vaccination campaigns to slow the spread of the disease. In Minya governorate, where most of the cases have been reported, special ambulance crews to transport patients with suspected bird flu have been established. +

+
+

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_12_19.html b/data/flu-report-html/usgs_avian_flu_report_2014_12_19.html new file mode 100644 index 0000000..07a42d5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_12_19.html @@ -0,0 +1,2097 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 19, 2014 +

+
+ + newer + +
+

+ News Update December, 18 2014 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ + Scandinavia (LPAI H10N7) + + The Swedish Agency for Marine and Water Management announced on December 16 that about 3,000 harbor seals have died so far this year in Swedish and Danish waters, probably from infection with avian influenza virus H10N7. There have been additional reports of avian influenza-related seal deaths in Norway, Germany and the Netherlands. The virus was first detected in April off the coast of Gothenburg, Sweden, and in October estimates for number of seal deaths were 700. However, mortality estimates are difficult since most of the dead seal carcasses sank. There are about 10,000 seals in Sweden and 12,000 in Denmark. The agency thinks that most Swedish seals have probably been infected by the virus but that the majority developed protective antibodies. +

+

+ + USA (HPAI H5N2, H5N8) + + A total of 17 birds from a small-scale mortality event at Wiser Lake, Whatcom County, Washington have been tested at the USGS National Wildlife Health Center (NWHC). Four of these birds were positive for H5 avian influenza by RT-PCR, and highly pathogenic avian influenza virus H5N2 and H5N8 have been confirmed in a northern pintail and a gyrfalcon by the USDA National Veterinary Services Laboratories. The captive gyrfalcon had hunted in the same area and fed on a free-living widgeon. That bird subsequently died and the carcass was submitted to NWHC for testing. H5N8 was also identified in three other captive gyrfalcons that had died/euthanized after feeding on the same widgeon. These birds were examined at the Washington Animal Disease Diagnostic Laboratory. The widgeon remains are being tested by the USDA National Veterinary Services Laboratories to confirm that it carried the virus that infected the gyrfalcons. The northern pintail was among the mallards, American widgeon, northern shoveler, and trumpeter swan and other waterfowl that died in the area. The pintail was collected by the Washington Department of Fish and Wildlife after a die-off of 50 to 100 birds at Wiser Lake. Wiser Lake has a history of aspergillosis and lead poisoning. Aspergillosis was present in at least five of the birds thus far, but the northern pintail was also infected with HPAI H5N2. +

+

+ According to the Scientific Task Force on Avian Influenza and Wild Birds, an expert panel co-convened by the United Nations Environment Programme/Convention on Migratory Species and the Food and Agriculture Organization, the attention regarding the role of wild birds in spreading highly pathogenic H5N8 could distract from effective disease control. The Task Force said that regardless of the source of the introduction (wild birds or human-mediated), the focus should be on disease control actions at affected farms in order to prevent further spread. The Task Force suggested that killing wild birds or spraying disinfectants on wild bird habitats is not advisable and such measures are contrary to conservation commitments accepted by Contracting Parties to both the Convention on Migratory Species and the Ramsar Convention. +

+

+ + Avian Influenza in Poultry + +

+

+ + South Korea (AIV) + + The Animal and Plant Quarantine Agency announced that avian influenza had been detected at a farm in Yangsan, South Gyeongsang Province. The subtype of the virus involved has not been determined. On December 14 authorities culled at least 656 chickens and ducks to prevent spread of the virus. +

+

+ + Germany (HPAI H5N8) + + The state of Lower Saxony?s agriculture ministry confirmed on December 16 a case of H5N8 avian influenza at a turkey farm in Barssel, Cloppenburg, Lower Saxony (Niedersachsen). Of the 17,887 susceptible birds, there have been 4088 cases, 199 deaths, and the remaining 17,688 birds have been destroyed. Control measures applied include control of wildlife reservoirs, movement control inside the country, screening, zoning, and disinfection of the premises. H5N8 was first confirmed in Germany on November 4 at a poultry farm in the state of Mecklenburg-Vorpommern, and a second case was found on November 22 in a wild bird. +

+

+ + Japan (HPAI H5N8) + + The Ministry of Agriculture, Forestry and Fisheries announced the first outbreak of avian influenza in the country since April. The H5N8 virus caused the death of more than 20 chickens on a farm in Kitagawa, Miyazaki prefecture, and authorities have culled about 4,000 birds and disinfected the farm. Shipments of poultry and eggs have been restricted within a 6-mile radius of the farm, and authorities are investigating the route of infection. The outbreak in April occurred in Kumamoto prefecture, and 112,000 chickens on two farms were destroyed. +

+

+ + India (HPAI H5N1) + + The National Institute of High Security Animal Diseases confirmed on December 16 the presence of H5N1 among domestic geese at Sukhna Lake in the Union Territory of Chandigarh. Of 100 susceptible birds, 22 have died. Chandigarh authorities plan to carry out mass culling of the birds, as well as culling of birds within a one-kilometer radius of the lake, and may plan further measures. Boating on the lake has stopped, and people are advised not to swim in the lake. Sixteen forest and wildlife department personnel who were handling the sick and dead ducks over the past two weeks were sent to the hospital for screening. +

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI H5N1) + + The Egyptian health ministry has announced two more deaths from H5N1, bringing the total number of avian influenza fatalities in Egypt this year to 9, and the total since the virus first appeared in 2006 to 72. A 33-year-old woman from Sohag province died on December 11, and a 20-year-old woman died on December 17 in the city of Assiut after being hospitalized for three days. Tamiflu, the anti-viral medication used to treat avian influenza, is available in public hospitals throughout the country. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_12_23.html b/data/flu-report-html/usgs_avian_flu_report_2014_12_23.html new file mode 100644 index 0000000..b7d9db1 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_12_23.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Dec 23, 2014 +

+
+ + newer + +
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+ News Update December, 25 2014 +

+
+

+ + Avian Influenza in Birds + +

+

+ + Canada (HPAI H5N2) + + A second poultry farm in Langley, British Columbia has been quarantined due to the outbreak of highly pathogenic avian influenza (HPAI ) H5N8 virus. The Canadian Food Inspection Agency said that the farm, the 11th so far, has 11,800 broiler and breeder chickens. As is the case at the other farms identified thus far, all birds will be euthanized. Of the 11 farms identified thus far, eight are in Abbotsford, one in Chilliwack and two in Langley. Three are turkey farms, with the remainder raising chickens for various uses. The total number of birds affected, all of whom are being euthanized, is 245,600. +

+

+ + Germany (HPAI H5N8) + + In the German city of Meppen, near the Dutch border, a second case of HPAI H5N8 bird flu has been detected in a duck farm. Meppen is located in the German state of Lower Saxony, about 35 kilometers across the border from Emmen, The Netherlands. The Ministry of Agriculture in Hanover reports that all 10,000 birds have been culled. A monitoring area of three kilometers has been set up. There are 18 poultry farms with a total of 180,000 animals in the area. On December 15th, bird flu was discovered in Lower Saxony, near Groningen Nieuweschans, and some 20,000 turkeys were slaughtered. Lower Saxony is a major German market player with 100 million birds. Bird flu in the Netherlands has so far cost the poultry industry between 32 and 39 million euros. +

+

+ + USA (HPAI H5N8) + + The H5N8 avian influenza virus was confirmed by USDA in guinea fowl and chickens from a small backyard poultry flock in Winston, Oregon. The flock of approximately 100 birds has access to the outdoors and a pond and marsh on the premises are frequented by migratory birds. This H5N8 virus is the same virus that was found in a Washington gyrfalcon recently. Backyard flock owners can report sick birds to the State Veterinarian's office at 1-800-347-7028 or can call USDA at 1-866-536-7593. +

+

+ Oregon's commercial poultry industry has a robust avian influenza testing program and ODA conducts weekly surveillance testing and health inspections at the state's only live bird market in Woodburn. In addition, wild bird mortality surveillance is routinely conducted by the Oregon Department of Fish and Wildlife. Wild bird deaths can be reported to the ODFW toll-free line at 1-866-968-2600. +

+

+ + Vietnam (HPAI H5N1) + + In Loc Bac village, Son Tinh District, Quang Ngai province, 2,965 birds have died from HPAI H5N1 in a flock of 12,000 birds. The outbreak is reported to have begun on December 13. Infected premises/establishments have been disinfected. http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=16807 +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + + Seven additional human cases of avian influenza A(H7N9) in China including Xinjiang Uyghur Autonomous Region (Xinjiang) (four cases), Zhejiang (two cases) and Jiangsu (one case) were reported by the Hong Kong Health Department. +

+

+ The patients comprise five men and two women aged from 36 to 81. Four of them (three from Xinjiang and one from Jiangsu) died while two of them (one from Xinjiang and one from Zhejiang) are currently in serious condition. The remaining case from Zhejiang is now in mild condition and did not require hospitalization. +

+

+ To date, 454 human cases of avian influenza A(H7N9) have been confirmed in the Mainland in Zhejiang (141 cases), Guangdong (111 cases), Jiangsu (59 cases), Shanghai (42 cases), Hunan (24 cases), Fujian (23 cases), Anhui (17 cases), Jiangxi (eight cases), Xinjiang (eight cases), Beijing (five cases), Shandong (five cases), Henan (four cases), Guangxi (three cases), Jilin (two cases), Guizhou (one case) and Hebei (one case).To date, 454 human cases of avian influenza A(H7N9) have been confirmed in the Mainland in Zhejiang (141 cases), Guangdong (111 cases), Jiangsu (59 cases), Shanghai (42 cases), Hunan (24 cases), Fujian (23 cases), Anhui (17 cases), Jiangxi (eight cases), Xinjiang (eight cases), Beijing (five cases), Shandong (five cases), Henan (four cases), Guangxi (three cases), Jilin (two cases), Guizhou (one case) and Hebei (one case). +

+

+ + Egypt (HPAI H5N1) + + With the addition of the newest case of human H5N1 avian influenza in a man and a woman from Sohag governorate, this brings the total cases of the lethal zoonotic infection to 21 in Egypt. The report notes that a 42-year-old woman from Sohag exhibited symptoms on Dec. 4 and was admitted to the hospital for treatment about one week later. She was diagnosed with double pneumonia and later recovered. The man, also 42, developed symptoms on Dec. 19 and was hospitalized a day later. He is in stable conditions. The investigation into the case reveals the woman was exposed to backyard birds. There is no information on how the man was exposed at this time. The total number of cases of human H5N1 avian flu in 2014 in Egypt is now 21 cases (8 cases have recovered, 4 cases are currently under treatment and 9 succumbed to the disease). +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2014_12_29.html b/data/flu-report-html/usgs_avian_flu_report_2014_12_29.html new file mode 100644 index 0000000..5f23894 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2014_12_29.html @@ -0,0 +1,2124 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ + older + + +

+ Avian Influenza Archive from Dec 29, 2014 +

+
+ + newer + +
+

+

+ News Update December 29, 2014 +

+

+

+ + Russia (HPAI H5N8) + + Belaya Gora, Abyjsky District, Republic of Sakha (Yakutia). +

+

+ Highly pathogenic avian influenza (HPAI) H5N8 was identified in a sample (trachea) from a hunter-shot Eurasian wigeon. Preliminary analysis suggests this H5N8 is similar to the HPAIV's identified in Asia and Europe based on the portions of the HA and NA genes sequenced so far. Further investigation of this HPAI virus including pathogenicity tests in chickens and full genome sequencing will be done. No HPAI H5N8 virus has been detected in poultry in the Russian Federation. +

+

+ + Avian Influenza in Wild Animals + +

+

+ + USA (HPAI H5N2, H5N8) + + Olympia, WA. State and federal officials may ask waterfowl hunters in Clark Thurston, Snohomish, Skagit and Whatcom counties in Washington for samples from birds they have harvested to test for avian influenza. Thousands of chickens and domestic turkeys in British Columbia have died from the virus and it has been detected in wild birds in Washington. A genetically nearly identical H5N8 infected domestic guinea fowl has been confirmed in Oregon. More than 10,000 wild birds were tested for bird flu viruses from 2005 to 2011, and bird flu viruses were found in about 10 percent, but none are related to the current HPAI H5N2/H5N8 viruses. +

+

+ Canadian inspectors first confirmed the highly pathogenic H5N2 strain of avian influenza virus at two British Columbia poultry farms during the first week of December. Aware of that finding, WDFW had two birds - a gyrfalcon and northern pintail duck - that died in Whatcom County tested for bird flu the following week. The gyrfalcon, used for hunting and fed on an American wigeon by its owner, was found to have a highly pathogenic H5N8 form of the virus. The northern pintail was found dead at Wiser Lake was infected with a H5N2 virus that was similar to the strain found in poultry in British Columbia. +

+

+ + Avian Influenza in Poultry + +

+

+ + Canada (HPAI H5N2) + + A small non-commercial poultry operation in Aldergrove, British Columbia has become the latest victim of an avian flu outbreak in the Fraser Valley. Eighty five birds at the Aldergrove location were destroyed over the weekend. Since the HPAI H5N2 virus was detected at a broiler/breeder farm in Chilliwack and a turkey farm in Abbotsford, a total of 12 sites have been affected and more than 240,000 birds have been killed with carbon dioxide gas and then composted to keep the deadly virus from spreading. There have been two other cases in the Langley area, resulting in the destruction of 53,000 table egg layers at one farm and 11,800 broilers/breeders at another. +

+

+ There have been no reports of H5N2 related illness in humans. The worst avian flu outbreak in Canada was recorded in 2004, affecting 42 commercial farms and 11 non-commercial operations in the Fraser Valley and leading to the destruction of 17 million birds. The virus has been detected in northern pintail ducks just across the border in Lynden, Wash. +

+

+ + USA (HPAI H5N8) + + The USDA reported that the HPAI H5N8 strain of avian flu was discovered in an Oregon backyard poultry flock. The mixed flock of multiple species had access to a pond and a marsh, where wild birds frequented. On Tuesday, the USDA Animal and Plant Health Inspection Service (APHIS) banned Canadian birds and bird products originating in or transiting through the control zone in B.C. from crossing the border. The ban covers uncooked chicken, turkey, duck, or goose; raw eggs; live birds; hatching eggs; composted manure; and meat from hunter-harvested birds. Pet birds must have APHIS-approved health certificates and will be required to spend 30 days in quarantine. More information can be found online at http://www.aphis.usda.gov/wps/portal/aphis/home/ +

+

+ + Japan (HPAI H5) + + The Miyazaki Prefectural Government had slaughtered 42,000 chickens on a farm in the city of Miyazaki after a genetic test of dead fowl confirmed the presence of HPAI H5 bird flu virus. (The NA subtyping is not yet available). Chickens within a radius of 3 km of the outbreak have been prohibited from being moved and shipments of another 1.93 million chickens in areas within 10 km have been banned. Also, the prefecture set up 10 sterilization points on roads around the affected farm. +

+

+ This is the second time a highly pathogenic bird flu strain has been confirmed in Miyazaki prefecture this year. On Dec. 16, the HPAI H5N8 virus was confirmed at a poultry farm in Nobeoka, also in Miyazaki Prefecture, where about 4,000 chickens were culled. It is uncertain whether there is a link between the first outbreak and the second and further testing of the strain will be conducted at a government-backed research institute. +

+

+ + Taiwan (LPAI H5) + + Jiaoxi Township, Yilan County +

+

+ H7N9 subtype LPAI was confirmed on 16 December 2014 from a wild bird fecal sample in a wetland. The gene sequence of the H7N9 subtype LPAI is different from China's strain. Subsequently, intensified active surveillance within 3 km-radius of the aforementioned wetland detected H5 avian influenza virus (AIV) in a duck breeder farm with 2600 birds. The gene sequence analysis of the HA0 cleavage site of the H5 RNA demonstrated that the causal agent was of low pathogenicity. Movement restriction was implemented on the duck breeder farm. Clinical investigation on the affected farm showed that the ducks were in healthy condition without abnormal mortality and egg production. The clinical investigation and surveillance of surrounding poultry farms are ongoing. +

+

+ + Vietnam (HPAI H5N1, H5N6) + + The Department of Animal Health declared an epidemic of the H5N1 avian flu in poultry in three communes of the Mekong delta provinces of Vinh Long and Tra Vinh and the H5N6 avian flu in flocks of quail in Tinh Ha Commune in the central province of Quang Ngai's Son Tinh District. +

+

+ The Health Ministry also proposed departments of agriculture and rural development to enhance supervision in a bid to early detect outbreaks of diseases and bird flu to stop spreading. +

+

+ + Avian Influenza in Humans + +

+

+ + Egypt (HPAI H5N1) + + A five-year-old Egyptian child died from bird flu and is the tenth death from the virus in the country out of 23 identified cases this year. The child's mother said he had contact with sick birds. An infected 30-year old woman from the Menoufiya governorate was admitted to hospital and is still undergoing treatment. Finally, a 25-year-old woman from Minya province who developed symptoms on 12/21 and was hospitalized two days later have all been confirmed to be infected with HPAI H5N1. This brings the total to 24 cases this year with 10 deaths. Out of the 14 other surviving infected patients, eight have been discharged and six others are still sick in hospital. According to the World Health Organization (WHO), from 2003 to Oct. 2, 2014, 668 laboratory-confirmed human cases of H5N1 infection have been officially reported by 16 countries. Of these cases, 393 have died. Egypt's H5N1 cases have largely been in poor rural areas in the south, where villagers, particularly women, tend to keep and slaughter poultry in the home. Bird flu first appeared in Egypt in 2006. +

+

+ + Hong Kong ex China (LPAI H7N9) + + A 68-year-old woman is in critical condition with H7N9 bird flu in Tuen Mun Hospital. She contracted the virus in while travelling to Longgang district in Shenzhen on Dec 13, where she visited a wet market to purchase vegetables but did not have direct poultry contact. While in Shenzhen, she ate chicken at a home-cooked meal and returned to Hong Kong on the same day. She fell ill on 12/19 and saw doctors at a clinic on 12/19 and 12/23 and was hospitalized on 12/25. Family members, clinic staff and fellow travelers are being monitored for possible infection from contact with the patient. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_01_08.html b/data/flu-report-html/usgs_avian_flu_report_2015_01_08.html new file mode 100644 index 0000000..cf32422 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_01_08.html @@ -0,0 +1,2176 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 08, 2015 +

+
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+

+ + News Update January 8, 2015 + +

+

+

+
+ + + Avian Influenza in Wild Animals +
+ HPAI H5N1 +
+
+
+
+ A new study published in PNAS found that migratory birds in Asia transmit H5N1 avian influenza virus along flyways when they migrate.  Using satellite tracking data for four migratory bird species in Asia, highly pathogenic avian influenza  (HPAI) H5N1 virus outbreak records, and genome sequences of viral samples, the study shows a close association between the timing of bird migration and H5N1 outbreaks.  The study also shows that flyways are a major barrier to intracontinental spread of the virus as transmission then to spread along rather than acrosss flyways. +
+
+
+ + + Germany (HPAI H5N8) + +
+
+ Authorities in the district of Stendal, Saxony-Anhalt, Germany, reported on January 7 that HPAI H5N8 virus has been detected in two mallards shot by hunters on December 31.  Testing was immediately carried out on poultry in the area, with results expected in the next week.  On January 8 the German Ministry of Agriculture reported that three white storks at the Rostock Zoo tested positive for the HPAI H5N8 virus and have died. Thirty nine birds were culled to prevent the spread of the virus. A day later, the zoo announced that a red ibis has tested positive for the same virus and an additional eighteeen birds were culled. +
+
+ + + Japan (HPAI H5N8) + +
+
+ A hooded crane that died at the Izumi Crane Preserve in Kagoshima prefecture on Jan 3 has tested positive for HPAI H5N8. +
+
+ + + USA (HPAI H5N8) + +
+
+ A gadwall, shot by hunters in Butte County, CA and submitted for testing on 12/31/14 was found to be infected with HPAI H5N8. The virus is similar to those recently reported in Washington and Oregon. +
+
+ + + Avian Influenza in Poultry + +
+ + Japan (HPAI H5) + +
+
+ An outbreak of highly pathogenic bird influenza has been confirmed in Yamaguchi Prefecture. 37,000 chickens at a farm in Nagato, about 275 km north of the city of Miyazaki are being culled as a result. A quarantine banning the movement of poultry has been established within a 3 km area around the infected farm. +
+
+ + + Hong Kong ex China (LPAI H7N9) + +
+
+ Hong Kong Secretary for Food and Health, Dr. Ko Wing-man, announced on December 31 that 120 chickens at the market in Cheung Sha Wan, Kowloon District, supplied by a farm in Guangdong Province in mainland China, tested positive H7N9 avian influenza.  Authorities culled almost 19,000 birds at the market, including 11,800 chickens.  The market was closed and poultry imports from the mainland suspended for 21 days. +
+
+ + + USA (HPAI H5N2) + +
+
+ The Washington State Department of Agriculture has established an emergency quarantine on eggs, poultry, and poultry products in a 20 mile area near two locations in Benton County where H5N2 avian influenza was found in two backyard flocks of chickens, turkeys, ducks and guinea fowl in the past two weeks.  More than 700 birds have died or been euthanized.  The quarantine also applies to pheasants, partridges, chukars, quail, and grouse.  Birds and poultry products are prohibited from moving within the quarantine areas as well as outside of it.  Businesses can get exemptions from the quarantine if they can show they have strong biosecurity measures. +
+
+
+ + + China (H9N2 and the evolution of H7N9) + +
+
+ A study led by scientists at St. Jude Children?s Research Hospital and the China Agricultral University has shown how the avian influenza H7N9, which has sickened more than 375 people since 2013, was created.  Researchers used genome sequencing to track changes in the H9N2 chicken virus between 1994 and 2013.  From 2010 to 2013 the H9N2 virus emerged as the predominant subtype due to its genetic makeup that allowed it to flourish despite vaccinations.  The study suggests that the H9N2 virus in infected chickens likely swapped genes with other avian influenza viruses from migratory birds and domestic ducks.  The resulting H7N9 virus included six genes from H9N2.  This tendency to swap genes also helped the H9N2 virus spread, as it allowed the virus to escape vaccine detection. The results underscore the need for continued surveillance of flu viruses on poultry farms and identified changes in the H9N2 virus that could serve as an early warning sign of emerging flu viruses. +
+
+
+ + + Taiwan (HPAI H5N2) + +
+
+ Around 120,000 chickens on a farm in Pingtung County will be culled due to the detection of HPAI H5N2 virus.  The outbreak started in December with sporadic cases and is the first time the farm has experience an avian influenza outbreak.  The Pingtung Agriculture department and the Animal Disease Control Center have banned the movement of chickens and will disinfect the farm as they continue monitoring the situation. The same virus was found in four goose farms in Yulin County with a total of 16,000 birds and on a duck egg farm in Pingtung County with 8500 ducks. The strain of HPAI H5N2 is completely new and contains a hemagglutinin gene that is related to the 2014 South Korean HPAI H5N8, but the neuraminidase gene is more rleated to a virus found in Jilin in 2011. +
+
+
+ + + Taiwan (HPAI H5N8) +
+
+
+ Geese in Chiayi County have tested positive for HPAI H5N8, a day after the announcement of the discovery of H5N2 in Taiwan.  The virus is 99% identical to the 2014 South Korean HPAI H5N8 viruses. ?This (H5N8) has never been discovered in Taiwan before, it probably could be brought to Taiwan by migratory birds,? said Chang Su-san, head of the Bureau of Animal and Plant Health Inspection and Quarantine. +
+
+ + + Avian Influenza in Humans +
+ China (LPAI H7N9) +
+
+
+ Eleven individuals in western Chinese provinces have been diagnosed with the low pathogenic H7N9 avian influenza, including five deaths. Most of the patients were confirmed to have had contact with live poultry at the time of their infection.  All patients are adults and most were infected in late November or early December. +
+
+ A six year old girl in Shenzhen City in Guangdong Province tested positive for H7N9 avian influenza.  She is hospitalized and her case is described as ?mild.? Two separate cases were confirmed in a 56 year old man and a 68 year old woman in Guangdong Province.  Health officials have confirmed they are infected with H7N9; the infections appear to be related to recent outbreaks of H7N9 in poultry around Guangdong Province late last year. Authorities in Guangdong and Hong Kong culled thousands of chickens in January after exports to Hong Kong were found to be infected with the virus. +
+
+
+ + + Egypt (HPAI H5N1) + +
+
+
+ A 45-year-old man died of avian flu in Menoufiya in the Nile Delta.  There was no information on the strain of the virus; however, Egypt has been suffering from outbreaks of the highly pathogenic H5N1 strain of avian influenza.  Health officials reminded people to handle and cook poultry properly. +
+
+ In a separate incident a three year old child from the Giza governorate died of H5N1.  Two other cases of H5N1 are being treated in the nearby Minya governorate.  A 30 year old man and 11 year old child are confirmed to be infected with the H5N1 virus.  Both patients are described as being in stable condition. +
+
+ A total of 10 cases have been reported in 2015. Of these one have died, two are recovering and seven are being treated. +
+

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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_01_16.html b/data/flu-report-html/usgs_avian_flu_report_2015_01_16.html new file mode 100644 index 0000000..076e554 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_01_16.html @@ -0,0 +1,2103 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Jan 16, 2015 +

+
+ + newer + +
+

+ + News Update + +
+
+ + Avian Influenza in Wild Animals + +
+ + +

+

+ + USA (HPAI H5N8) + +
+ The National Veterinary Services Laboratory in Ames, Iowa has confirmed the highly pathogenic H5N8 avian influenza virus in an American widgeon duck from Davis County, Utah.  This is the first time that the virus has been found in the state. Other wild birds from the area are being tested.  Officials said surveillance for avian influenza is ongoing in poultry operations, live bird markets, and migratory wild bird populations.  The H5N8 strain has not been found in humans or commercial poultry. +
+
+ A mallard, shot by a hunter at the fern Ridge Wildlfie Area near Eugene, Oregon has also tested positive for highly pathogenic avian influenza H5N8 according the Brandon Reishus, a wildlife manager with Oregon Department of Fish and Wildlfie, The bird was shot on Dec 20 and the sample was initially tested at OSU Veterinary Diagnostic Lab in Corvallis, then at the National Veterinary Services Laboratory in Ames, Iowa. +
+
+ + +

+

+ + Avian Influenza in Poultry + +
+ + +

+

+ + South Korea (HPAI H5) + +
+ According to quarantine officials, a case of highly pathogenic H5 avian influenza was confirmed in chicken and geese that died at a poultry farm in Busan.  Further tests are needed to determine if they died from the H5N8 strain of the disease.  580 geese, chickens, and pigeons at the farm were all culled to prevent the disease from spreading.  Four checkpoints have also been set up around the farm to disinfect cars and control the movement of people and animals.  In addition to the Busan outbreak, officials said ducks at a farm in Anseong also tested positive for the H5 strain. +
+
+ + Taiwan (HPAI H5N2 and H5N8) + +
+ According to Su-san, director general of the Bureau of Animal and Plant Health Inspection and Quarantine, birds on 65 goose and duck farms in central and southern parts of Taiwan have tested positive for the highly pathogenic H5N2 and H5N8 strains of avian influenza.  Around 16,500 geese and ducks have been culled.  All poultry slaughter houses have been ordered by animal health authorities to cease operations for two days to carry out sterilization.  Additional control measures include testing of poultry within a 3-kilometer radius and movement restrictions across the island.  The H5N2 strain is a new recombinant and was discovered through DNA testing to be a hybrid of a H5N8 strain that was responsible for outbreaks in poultry in South Korea last year and China in 2011.   It has not been found in humans.  These outbreaks mark the first time the H5N8 strain has been identified in Taiwan.  So far only ducks and geese have tested positive, but authorities are on alert after a report that chickens on a farm in Tainan   have mysteriously begun dying. +
+
+ + +

+

+ + Avian Influenza in Humans + +
+ + +

+

+ + Egypt (HPAI H5N1) + +
+ According to the health ministry, a 65-year-old woman from the central province of Assiut has died from highly pathogenic H5N1 avian influenza.  Seven other cases are currently being treated and three have recovered this year, the ministry said.  The cases have mostly been in poor rural areas in the south, where villagers tend to keep and slaughter poultry at home.  Contrary to recent claims, the World Health Organization (WHO) said this week that there does not appear to have been any major genetic change in the influenza strain to explain the recent rise in human cases in Egypt. A total of 18 cases have been reported to WHO since Dec 4, making December 2014 the highest number of human cases ever reported in a single month in Egypt. +

+
+

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+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_01_22.html b/data/flu-report-html/usgs_avian_flu_report_2015_01_22.html new file mode 100644 index 0000000..821be17 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_01_22.html @@ -0,0 +1,2060 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
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+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 22, 2015 +

+
+ + newer + +
+

+ Discovery of novel highly pathogenic avian influenza H5N1 virus in USA wild birds (January 21, 2015) +

+
+

+ A novel H5N1-reassortant virus belonging the same + + group + + as other recently reported H5 viruses which are highly pathogenic (HPAI) to poultry has been identified from a green-winged teal (Anas carolinensis) collected from a hunter-harvest surveillance project funded by the U.S. Geological Survey. The bird was sampled in Whatcom County, Washington on December 29, 2014. This novel virus, designated EA/AM H5N1, is different from the Asian HPAI H5N1 and is a mixture of Eurasian (EA) and low pathogenic North American (AM) origin viruses. +

+

+ In response to initial detections of HPAI virus in wild birds in backyard poultry in the USA and Canada, the USGS National Wildlife Health Center (NWHC) is working closely with the USDA - Wildlife Services, U.S. Fish and Wildlife Service, Washington Department of Fish and Wildlife, and other state Wildlife Departments to implement enhanced mortality and hunter-harvest surveillance in wild birds. As of mid-January, NWHC has tested oropharyngeal/cloacal swabs from over 1,200 birds originating from California, Nevada, Oregon, and Washington with the majority of collections focused in Washington. Of these samples, 167 were positive for avian influenza viruses by an initial molecular screening test (matrix RT-PCR) and 20 were positive for H5 subtypes by follow-up molecular testing. As a member of the National Animal Health Laboratory Network, NWHC sends H5-positive samples to USDA?s National Veterinary Services Laboratories (NVSL) for further characterization. On January 21 2015, NVSL confirmed identification of the EA/AM H5N1 virus as containing PB2, H5, NP, and MP RNA segments identical to the gyrfalcon H5N8 previously identified in Whatcom, County and PB1, PA, N1, and NS RNA segments from North American low-pathogenic avian influenza viruses of wild bird origin. +

+

+ Additional information on this and other winter (2014/2015) wild bird surveillance results can be found at: +

+

+ + Update on Avian Influenza Findings in the Pacific Flyway + +

+

+ + OIE Notification Report from APHIS + +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_01_23.html b/data/flu-report-html/usgs_avian_flu_report_2015_01_23.html new file mode 100644 index 0000000..cf4f0b7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_01_23.html @@ -0,0 +1,2191 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 23, 2015 +

+
+ + newer + +
+

+ News Update January 23, 2015 +

+

+
+ + Discovery of novel highly pathogenic avian influenza H5N1 virus in USA wild birds (January 21, 2015) + +
+

+

+ A reassortant H5N1 virus belonging to the same group as other recent highly pathogenic avian influenza (HPAI) H5 viruses has been identified from a green-wing teal (Anas carolinensis) collected from a hunter-harvest surveillance project funded by the U.S. Geological Survey. The bird was sampled in Whatcom County, Washington, on December 29, 2014. This novel virus, designated EA/AM H5N1, is different from the Asian HPAI H5N1 and is a mixture of Eurasian (EA) and low pathogenic North American (AM) origin viruses. +
+ In response to initial detections of HPAI virus in wild birds in backyard poultry in the USA and Canada, the USGS National Wildlife Health Center (NWHC) has worked closely with U.S. Department of Agriculture - Wildlife Services, U.S. Fish and Wildlife Service, Washington Department of Fish and Wildlife, and other state Wildlife Departments to implement enhanced mortality and hunter-harvest surveillance in wild birds. As of mid-January, NWHC has tested oropharyngeal/cloacal swabs from over 1,200 birds originating from California, Nevada, Oregon, and Washington, with the majority of collections focused in Washington. Of these samples, 167 were positive for avian influenza viruses by an initial molecular screening test (matrix RT-PCR) and 20 were positive for H5 subtypes by follow-up molecular testing. As a member of the National Animal Health Laboratory Network, NWHC sends H5-positive samples to USDA's National Veterinary Services Laboratories (NVSL) for further characterization. On January 21, 2015, NVSL confirmed identification of the EA/AM H5N1 virus as containing PB2, H5, NP, and MP RNA segments identical to the gyrfalcon H5N8 previously identified in Whatcom County and PB1, PA, N1, and NS RNA segments from North American low-pathogenic avian influenza viruses of wild bird origin. +
+ Additional information on this and other winter (2014/2015) wild bird surveillance results can be found at: +

+

+ + + + Update on Avian Influenza Findings in the Pacific Flyway + + + + + + + + +

+

+ +
+
+ + + + OIE Notification Report from APHIS + + + + + + + +

+

+ + Avian Influenza in Wild Animals +
+ China (HPAI H5N1) +
+

+

+ According to the National Bird Flu Reference Laboratory, 93 swans and wild ducks in the Sanmenxia Reservoir Area in Henan Province have died from the highly pathogenic H5N1 avian influenza virus.  In the Pinglu Wetland in the neighboring Pinglu Couty, Shanxi Province, 22 swans and 25 other wild birds have also been found dead.  The local governments in Sanmenxia City and Pinggu County have taken a variety of control measures, including blocking the entrance to the areas and examining people who had contact with the birds.  There has been no human infection reported. +

+

+ + Taiwan (HPAI H5N3) + +

+

+ According to the Animal Health Inspection and Quarantine Institute, the highly pathogenic H5N3 avian influenza virus has been confirmed in three Chinese bulbuls found dead in Miaoli County.  The birds were found within 1 kilometer of a fowl slaughterhouse.  A Naumann's thrush found dead in Pingtung County was also confirmed to be infected with H5 avian influenza.  Pingtung Magistrate Pan Men-an urged the central government for more monitoring of wild birds and control measures, such as putting up nets around fowl farms to prevent wild birds from entering.  Over 520,000 fowl have been culled in the recent outbreak of H5 avian influenza, and officials estimate that 1 million chickens will be culled. +

+

+
+ + Avian Influenza in Poultry +
+ Israel (HPAI H5N1) +
+

+

+ According to the World Organisation for Animal Health (OIE), the highly pathogenic H5N1 avian influenza virus caused the death of 15,000 birds at a turkey farm in Moshav Avi'el, in the northern district of Hazafon, near Haifa.  More than 140,000 birds will be culled to prevent the disease from spreading, including 61,000 turkeys at a nearby farm showing no clinical signs. In addition to culling, the Agriculture Ministry will continue monitoring poultry with 10 kilometers of the Hazafon farm.  Other control measures include an increase in border-crossing enforcement and a ban on the entrance of poultry.  (See entry under Palestinian Territories below for related outbreaks.) +

+

+ + Japan (HPAI H5N8) + +

+

+ + Okayama + +
+ The highly pathogenic H5N8 avian influenza virus was confirmed at a poultry farm in Okayama Prefecture.  Roughly 200,000 chickens will be culled to prevent the disease from spreading.  Authorities have also banned movement of chickens and eggs at six farms within 3 kilometers, and 15 other farms within 10 kilometers have been ordered not to ship products.  Okayama is Japan's fourth largest egg producing prefecture and has 10 million breeding hens. This marks the fourth case of avian influenza at a poultry farm in Japan this winter. +

+

+ + Saga + +
+ According to a World Organisation for Animal Health report, the highly pathogenic H5N8 avian influenza virus was confirmed through gene sequencing at a broiler breeder farm in Aryita in Saga prefecture on the island of Kyushu.  Eight birds died, and around 72,900 have been culled.  Movement restrictions have been placed on farms within a 3-kilometer radius, and shipping is restricted from farms within a 10-kilometer radius. +

+

+ + Nigeria (HPAI H5N1) + +

+

+ HPAI H5N1 initially detected during the first week in January in Nigeria continues to spread. According to the Kano State Ministry of Agriculture, six cases of the highly pathogenic H5N1 avian influenza have been confirmed in commercial farms in Kumbotso, Gwale, Tofa, and Mingibir.  The disease was also found at a poultry farm in Lagos, where it was traced to a farm at Badore.  As of January 22, a total of seven states have been now been affected by the outbreak, including also Rivers, Delta, Edo, Plateau, and Ogun.  22,573 birds have been died or been culled since the first case of the virus was confirmed earlier on January 8th.  Nationwide control measures have been taken, including surveillance, quarantine, depopulation, and decontamination of all affected poultry farms and areas. +

+

+ + Palestinian Territories (Suspect HPAI H5N1) + +

+

+ 4,000 birds at a poultry farm in Siris, near Jenin in the Palestinian Territories have died from the disease, with 5,000 other potentially affected birds being culled. This location is immediately next to the Hazafon location in Israel. According to the Ministry of Agriculture, avian influenza virus has been detected in a poultry farm in the Qalqiliya district.  The strain is unknown, but is suspected to be H5N1, the same strain found recently in the village of Siris in Jenin.  Of the 5,000 hens at the farm, 4,000 have been culled.  Villages within 10 kilometers of the farm have been placed under surveillance and samples have been taken to prevent further spread of the disease. +

+

+ + Taiwan (HPAI H5N3) + +

+

+ According to the Bureau of Animal and Plant Health Inspection and Quarantine, birds on 370 goose, duck, and chicken farms in northern, central and southern parts of Taiwan have been confirmed with the highly pathogenic avian influenza virus of subtypes H5N2, H5N3, or H5N8.  The H5N3 strain found at 17 goose farms in Kaohsiung and Pingung is new to the country, and was discovered through DNA testing to be a hybrid of a N3 strain responsible for outbreaks in Kaohsiung, Taiwan last year, and an H5 strain responsible for outbreaks in South Korea last year.  The H5N2 strain has so far only been found in Taiwan and was discovered through DNA testing to be a hybrid of a H5N2 strain that was responsible of outbreaks in poultry in South Korea last year and China in 2011.  The viruses are believed to have been carried to Taiwan by migratory birds.  Over half million poultry have been culled, and health authorities ordered all poultry slaughter houses to cease operations for two days to carry out sterilization.  Other control measures include testing of poultry within in a 3-kilometer radius of the affected farms and movement restrictions across the island. +

+

+
+ + USA (HPAI H5N1) + +

+

+ A recombinant H5N1 virus belonging to the same group as other recent highly pathogenic avian influenza (HPAI) H5 viruses has been identified from a green-winged teal (Anas carolinensis) collected from a hunter-harvest surveillance project funded by the U.S. Geological Survey. The bird was sampled in Whatcom County, Washington, on December 29, 2014. On January 20, 2015, the USDA National Veterinary Services Laboratory confirmed identification of the EA/AM H5N1 virus as containing PB2, H5, NP, and MP RNA segments identical to the gyrfalcon H5N8 previously identified in Whatcom County and PB1, PA, N1, and NS RNA segments from North American low-pathogenic avian influenza viruses of wild bird origin. +

+

+ + USA (HPAI H5N2) + +

+

+ Avian influenza has been discovered in a backyard flock of ducks, chickens, and geese in Clallam County, Washington.  All 118 birds were destroyed.  Officials plan to place a ban on the movement of eggs within a 6-mile radius of the area, with inspectors going door-to-door looking for sick or dead birds.  The virus was previously found in Whatcom and Benton counties. +

+

+
+ + Avian Influenza in Humans +
+ China (LPAI H7N9) +
+

+

+ According to the World Health Organization, China has reported 15 serious cases of low pathogenic H7N9 avian influenza virus in humans since December.  Three have died; the rest are in critical condition.  Their ages range from 20 to 78, with most over 50 years old, and all but one had been exposed to live poultry.  The H7N9 strain has not been shown to move easily between humans.  China has tried to reduce outbreaks by shutting down live poultry markets for cleaning. +

+

+ + Egypt (HPAI H5N1) + +

+

+ According to the Director of the Preventive Medicine Department, a total of 13 people suspected of being infected with the highly pathogenic H5N1 avian influenza virus have been quarantined in the Nile Delta city of Menofiya.   Samples from the patients will be sent to the central labs for analysis.  Recently, a 43 year-old woman died in the southern city of Asyut five days after being hospitalized.  A six-year-old child in the Minya province and a 47-year-old woman in the Assiut province also died of the disease.  This brings the total number of cases in Egypt to 20 so far this year, including five deaths, six recoveries, and nine cases still under treatment.  The World Health Organization says there has been a rise in the number of H5N1 human infections in Egypt, but there does not appear to have been a major genetic change in the strain.  Most of the cases have been in poor rural areas in the south, where villagers often raise and slaughter poultry themselves. +
+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_01_30.html b/data/flu-report-html/usgs_avian_flu_report_2015_01_30.html new file mode 100644 index 0000000..ba394ca --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_01_30.html @@ -0,0 +1,2128 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 30, 2015 +

+
+ + newer + +
+

+ News Update January 30, 2015 +

+

+ + + Avian Influenza in Wild Animals + + +
+ + Bulgaria (HPAI H5N1) + +
+
+ According to Dr. Pencho Kamenov, head of the Healthcare of Animals, a Dalmatian pelican (Pelacanus crispus) found dead in the Poda Protected Area near Burgas which is located on the Black Sea tested positive for the highly pathogenic H5N1 avian influenza virus.  A black-headed gull carcass found at the same time has tested negative for avian influenza. Control measures have been taken along the entire Black Sea coast, including a ban on hunting and markets.  Movement and bio security measures have also been placed at certain sites.  The Dalmatian pelican is a new species record for infection with HPAI H5N1. +
+
+ + Avian Influenza in Poultry + +
+ + India (HPAI H5N1) + +
+
+ According to the Union Health Department, the spread of avian influenza in the Alappuzha and Kottayam districts in Kerala was caused by the highly pathogenic H5N1 strain.  Over 200,000 birds have been culled, and surveillance measures have been put in place in a 10 km radius around the area to prevent spread of the virus. Meanwhile, the virus has spread in southern parts of the state.  It now has a strong presence in the Pathanamthitta and Ernakulam districts.  150 broiler chickens at a farm in Kumarakam died due to the virus, and incidents of ducks dying have been reported in the Kollam district. +
+
+ + Nigeria (HPAI H5N1) + +
+
+ According to the federal government, the highly pathogenic H5N1 avian influenza virus has spread to 11 states: Delta, Edo, Gombe, Imo, Jigawa, Kano, Lagos, Ogun, Oyo, Plateau, and Rivers.  A total of 232,385 birds have been exposed, with 51,444 deaths.  The Minister of Agriculture and Rural Development, Dr. Akinwunmi, said emergency measures will be taken to prevent the virus from spreading further, including surveillance, depopulation, quarantine and decontamination of infected farms and bird markets.  A restriction zone within a 3 km radius will also be placed. +
+
+ + Taiwan (HPAI H5N2, H5N3, H5N8) + +
+
+ Highly pathogenic H5N3 avian influenza has been reported on a total of 23 farms all but one is in Ping-tung County, with H5N2 also detected on three of the farms.  Of the 61,356 birds, 25,017 died, but only 2961 were destroyed. +
+
+ Highly pathogenic H5N2 avian influenza has been reported on 86 poultry farms in Taichung County, Changhua County, Yunlin county, Chiayi County, Tainan City, and Pingtung County.  A total of 224 farms have tested positive for H5N2 thus far. A total of 1,185,942 birds were affected, 265,035 died, and 187,022 were destroyed. +
+
+ Highly pathogenic H5N8 avian influenza has been reported on 108 waterfowl farms in Taichung County, Changhua County, Yunlin County, Chiayi county, Tainan City, Kaoshiung City, and Pingtung County. A total of 180 farms have been confirmed positive for H5N8 since the outbreak began in Tawian.  The H5N2 strain was also detected on 52 of the 108 farms.  A total of 365,591 birds were affected, 56,075 died, 92,203 were destroyed, and the rest will be culled. +
+
+ In addition to culling, other control measures are being taken.  All affected farms have been placed under movement restrictions and will be disinfected.  Nearby farms within a 3 km radius are under intensified surveillance for 3 months. +
+
+
+ + Avian Influenza in Humans + +
+ + Canada ex China (LPAI H7N9) + +
+
+ Health officials have confirmed the first documented human case of the low pathogenic H7N9 avian influenza in Canada.  The woman, a resident of British Columbia, had recently returned from China and was not showing symptoms while traveling.  The individual did not require hospitalization and is currently recovering in self-isolation.  Close contacts of the individual have been notified and their health is being monitored by local health authorities.  The risk of infection from H7N9 is low as it does not transmit easily from person-to-person. On Jan 30, the husband, who traveled with the index case to China, was also confirmed to be positive for H7N9. +
+
+ +
+ China (LPAI H7N9) +
+
+
+ Two additional cases of human infection by the low pathogenic H7N9 avian influenza virus have been reported in Guangdong province, bringing the total number of cases in the province to 25.  An 83-year-old man from Meizhou is in critical condition.  The other patient, a four-year-old boy from Heyuan, is in stable condition.  Several cities in Guangdong have taken control measures, including the culling of thousands of chickens and restricting the live poultry trade to prevent the spread of the disease.  Shanghai, Fujian, Jiangxi, and Zhejiang areas have also reported human cases of H7N9 this winter. +
+
+ + China (HPAI H5N1) +
+
+
+ The National Health and Family Planning Commission reported a human case of highly pathogenic H5N1 avian influenza in a 37-year-old woman from the Jiangsu province.  She attended a local hospital with symptoms of a fever and cough and is currently in critical condition.  This marks the ninth H5N1 avian influenza case reported by China in five years. +
+
+
+ + Egypt (HPAI H5N1) + +
+
+ The Egyptian Health Ministry reported that a 31-year-old woman in Gaza province died of the highly pathogenic H5N1 avian influenza virus.  The fatality was the tenth this year and brings the total number of avian influenza deaths in Egypt to 84.  Two cases were also reported in Cairo and the Nile Delta province of Shargiya. +

+
+

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_02_06.html b/data/flu-report-html/usgs_avian_flu_report_2015_02_06.html new file mode 100644 index 0000000..ced1ef8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_02_06.html @@ -0,0 +1,2129 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 06, 2015 +

+
+ + newer + +
+

+ News Update February 6, 2015 +

+
+
+ + Avian Influenza in Animals + +
+ + South Korea (HPAI H5N8) + +
+
+ According to the Ministry of Agriculture, Food and Rural Affairs, the highly pathogenic H5N8 avian influenza has been confirmed in one of three dogs at an affected duck farm in southeastern South Korea.  It is believed the dog may have consumed infected ducks.  No antigens or antibodies were found in the other two dogs, suggesting no dog-to-dog transmission of the virus.  All three dogs have been culled. +
+ +
+ Taiwan (H5) +
+
+
+ The Council of Agriculture reported that a rare black-faced spoonbill found dead in Tainan?s Cigu District tested positive for the H5 avian influenza virus.  The exact strain of the virus is unknown, and it is not known whether the strain is related to the multiple highly pathogenic H5 strains circulating in poultry on the island. To prevent further spread of the virus, all avian livestock farms within a 1 km radius will be monitored. +
+
+ + + Avian Influenza in Poultry + +
+ + Bulgaria (HPAI H5N1) + +
+
+
+ According to the Bulgarian Food Safety Agency, an outbreak of the highly pathogenic H5N1 avian influenza has been discovered in a backyard flock in the village of Konstantinovo, coastal Kameno Municipality.  All of the hens from the yard and two neighboring yards have been culled, and the street and nearby yards have been disinfected. +
+
+ + Israel (HPAI H5N1) + +
+
+ The highly pathogenic H5N1 virus has been discovered at a turkey farm in Kfar Vitkin.  37,000 turkeys will be culled to prevent spread of the disease.  The farm will be disinfected and closed for 30 days.  Other farms within a 10 km radius will be placed under quarantine for 30 days and undergo inspection.  A total of 157,000 birds have been culled in the past two weeks in Northern Israel due to the virus. +
+
+ + Japan (HPAI H5N8) + +
+
+ According to a World Organisation for Animal Health report, a mallard found dead in Izumi, Kagoshima Prefecture was confirmed via gene sequencing to have been infected with the highly pathogenic H5N8 avian influenza virus. +
+
+ + Nigeria (HPAI H5N1) + +
+
+ A poultry farm in Mando, Kaduna State has tested positive for the highly pathogenic H5N1 avian influenza virus. This marks the 12th state to be positive for H5N1 this year.  Control measures taken include depopulation of the farm, screening workers, and surveillance.  Live bird markets in the state are also being disinfected to prevent further spread of the disease. +
+
+ +
+ Taiwan (HPAI H5N2, H5N3, H5N8) +
+
+ In reports to OIE this week, 108 additional farms have tested positive for HPAI H5N2 and 51 additional farms are positive for HPAI H5N8. Among the latter, 12 were also infected with H5N2. At least 674 farms have tested positive for HPAI H5 this year and over 2.3 million birds have been culled to contain the outbreak. +
+
+ +
+ UK (LPAI H7) +
+
+ An outbreak of the low pathogenic H7 avian influenza virus has been confirmed at a chicken breeding farm in Upham, Hampshire, England. 52 birds have died and laboratory results indicate that the virus is the N7 sub-type, but further testing is needed to confirm.  A 1 km movement restriction zone has been placed, and all of the birds at the farm will be culled. +
+
+
+ + USA (HPAI H5N8) + +
+
+ Nevada agricultural officials reported a case of highly pathogenic H5N8 avian influenza in a hunter-harvest mallard duck in Lincoln County.  The Nevada Department of Agriculture will work with the United States Department of Agriculture?s Animal and Plant Health Inspection Service to monitor the situation, but so far it is an isolated case. +
+
+ An additional case of highly pathogenic H5N8 avian influenza was reported in a 4-H flock of chickens and waterfowl in Oroville, Washington.  A much larger flock in Riverside, Washington, has also been infected.  The 5,000 birds of mostly game birds at the Riverside farm will be culled before the smaller Oroville flock.  A quarantine has been set around both infected farms, and government officials have sampled 21 nearby flocks to see if the virus has spread. +
+
+
+
+
+
+

+ + Back + +

+
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+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_02_13.html b/data/flu-report-html/usgs_avian_flu_report_2015_02_13.html new file mode 100644 index 0000000..59ff41d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_02_13.html @@ -0,0 +1,2114 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Feb 13, 2015 +

+
+ + newer + +
+
+ + + News Update February 12, 2015 + + +
+ +
+ + Avian Influenza in Animals + +
+ South Korea (HPAI H5N8) +
+
+
+ According to officials, the highly pathogenic H5N8 avian influenza virus was confirmed from the feces of migratory birds at Jungnangcheon (Jungnan Stream) in the capital city of Seoul.  The stream is a habitat for more than 4,200 wild birds, with another 600 birds residing in a nearby national park.  The Seoul Metropolitan Government has blocked access to the stream and put quarantine measures in place.  In addition, all bird exhibits at zoos have been closed temporarily, and disinfection and monitoring will be tightened.  More than 1.8 million birds have been culled in the country since the disease broke out in December, but this is the first time the disease has been detected in Seoul. +
+
+ + USA (HPAI H5N2) + +
+
+ A Cooper?s hawk in Whatcom County and a red-tailed hawk in Skagit County, Washington tested positive for the highly pathogenic H5N2 avian influenza, the first confirmed cases of highly pathogenic avian influenza in wild raptors in North America. The hawks died of other causes, but the findings are a cause for concern due to small population sizes.  It?s unknown how the hawks contracted the virus, as waterfowl, which carry the virus, are not a regular part of their diet.  The raptors were among the hundreds of wild birds that have been sampled to determine how widespread the virus is; results from the sampling will be used to create a surveillance plan.  Meanwhile, poultry owners are being urged to keep their birds from coming into contact with wild birds to prevent the virus from spreading to commercial poultry. +
+ +
+
+ + Avian Influenza in Poultry + +
+ Canada (HPAI H5N1) +
+
+
+ An outbreak of the highly pathogenic H5N1 avian influenza virus was confirmed at a noncommercial chicken layer farm in Chilliwack.  84 birds died, and the remaining 13 were destroyed.  The Canadian Food Inspection Agency has placed the farm under quarantine and set up a 1 km surveillance zone.  Partial gene sequencing suggest that the virus is the same or similar to the H5N1 virus previously found in adjacent Washington State in a green-winged teal, but more testing is need to confirm. This marks the first case of the strain in British Columbia +
+
+ +
+ + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+
+
+ According to the Yunnan Department of Health, the first case of fowl-to-human transmission of avian influenza was detected in a 44-year-old man from Diqing Tibetan Autonomous Prefecture.  The man was admitted to a local clinic with fever and chills, and died three days later from pneumonia complications.  Blood tests revealed that the man had contracted the highly pathogenic H5N6 avian influenza virus, most likely through contact with wild ducks.  There has been no evidence of person to person transmission.  This is only the third known instance of bird-to-human transmission of the H5N6 virus and the second fatal case. +
+
+
+ + China (LPAI H7N9) + +
+
+ According to health authorities, the number of people in China infected with the low pathogenic H7N9 avian influenza virus has reached over100, with Guangdong, Fujian, Zhejiang, and Jiangsu provinces reporting the most cases.  The Shanghai Health and Family Planning Commission confirmed the first human infection in the city on January 17, with a second case reported a week later.  Live poultry trade will be banned across the city from February 19 to April 30 to prevent further spread of the virus. +
+
+ Guangdong has reported 43 cases this year, the most recent a 73-year-old man from Zhongshan city and a 56-year-old man in Jiangmen city, both in critical condition.  A 52-year-old man recently diagnosed in Shenzen city is in stable condition.  Thousands of chickens have been culled in Guangdong, and several cities in the province have placed restrictions on live poultry trade. +
+
+ The Zhejiang province has reported 21 cases this year.  Of the cases, three died, seven recovered, and 11 are undergoing treatment.  None of the cases were reported in urban areas after all live poultry markets were closed.  Health officials are urging the public to stay away from live poultry and uncertified poultry products. +
+
+
+ + Egypt (HPAI H5N1) + +
+
+ The health ministry has reported four additional cases of the highly pathogenic avian influenza virus, including two children under three years old.  All four cases from Suhag, Giza, Alexandria, and Cairo were admitted to hospitals.  Three other people have recovered from the virus.  A total of six people have been killed by the virus this year.  Most cases have been reported in rural areas where people tend to raise poultry in their homes. +
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_02_23.html b/data/flu-report-html/usgs_avian_flu_report_2015_02_23.html new file mode 100644 index 0000000..1dc32fc --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_02_23.html @@ -0,0 +1,2117 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Feb 23, 2015 +

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+

+

+ News Update Feb 19, 2015 +

+

+
+ + Avian Influenza in Animals + +
+ + Taiwan (HPAI H5N2) + +
+ According to a World Organisation for Animal Health report, a black-crowned night-heron found dead in Taitung City, Taitung County tested positive for the highly pathogenic H5N2 avian influenza virus. No dates were provided on the report. +
+
+ + Taiwan (HPAI H5N3) + +
+ According to a World Organisation for Animal Health report, three light-vented bulbuls found dead on 1/15/15 in Zhunan Township, Miaoli County, tested positive for the highly pathogenic H5N3 avian influenza virus.  In addition to cleaning and disinfecting the area where they were found, poultry farms within a 3 km radius have been placed under surveillance for 3 months to prevent the virus from spreading. +
+
+ + USA (HPAI H5N2, H5N8) + +
+ Wild ducks in Columbia, Morrow, Lane, and Canyon Counties, Oregon have tested positive for a reasserted highly pathogenic H5N8 avian influenza virus mixed with the Eurasian H5N8 strand.  The birds, all harvested by hunters, included three mallards, two northern pintails, a wood duck, and a northern shoveler.  The birds were all harvested at the beginning of the year, but were reported this week to the World Organisation for Animal Health. In addition to enhanced surveillance, all backyard premises have been quarantined. +
+
+ + Avian Influenza in Poultry + +
+ + Libya (HPAI H5N1) + +
+ According to the Survey Poultry Diseases of Animal Health Office, more than 100 chickens in Tobruk died of the highly pathogenic H5N1 avian influenza virus.  All affected birds have been culled, and birds for sale are being surveyed to prevent further spread of the virus. There is no independent confirmation of this report beyond local media. +
+
+ + Taiwan (HPAI H5N2, H5N3, H5N8) + +
+ Chicken and geese at 29 poultry farms in Changhua, Yunlin, Chiayi, Tainan, and Pingtung Counties tested positive for highly pathogenic H5N2 avian influenza.  A total of 95,908 birds died, and the remaining 16,8686 were culled.  A total of 434 farms have been affected by H5N2. Three farms have tested positive for highy pathogenic H5N3. A total of 24 farms have been affected by H5N3. Geese and turkeys at 5 poultry farms in Yunlin County, Chiayi County, and Tainan City tested positive for the highly pathogenic H5N8 avian influenza virus.  4,676 birds died, and the remaining 20,114 have been c ulled. A total of 271 farms have been affected by H5N8. In addition, affected farms were cleaned and disinfected, and surrounding farms within a 3 km radius have been placed under surveillance. +
+
+ + USA (CA, HPAI H5N8) + +
+ According to a World Organisation for Animal Health report, chickens and ducks at a poultry farm with 114,000 birds in Kings County, California tested positive for the highly pathogenic H5N8 avian influenza virus.  The outbreak began on 2/2/15.  The infected farm and others nearby have been placed under quarantine, and the remaining birds will be culled.  In addition, movement of poultry and poultry products within the control area has been prohibited.  Epidemiological investigations and enhanced surveillance are underway. This is the first commercial chicken facility affected by HPAI H5N8 in the US and followed the identification of the same HPAI H5N8 virus in a turkey farm in Stanislaus County, CA on 1/26/15. +
+
+ + USA (OR, HPAI H5N8) + +
+ Highly pathogenic H5N8 avian influenza has been detected in a backyard flock of 90 mixed poultry and other domestic birds, including chicken, ducks, and turkeys, near Tumalo in Deschutes County, OR.  The birds had access to several ponds on the property where they came into contact with migrating wild waterfowl.  The Oregon Department of Agriculture is setting up a quarantine zone around the area, and the property has been secured with no additional detections of HPAI in the area. +
+
+
+ + Avian Influenza in Humans + +
+ + Egypt (HPAI H5N1 and LPAI H9N2) + +
+ A 3-year-old male in Aswan Governorate tested positive for the low pathogenic H9N2 avian influenza virus.  It is suspected the child contracted the virus from contact with backyard poultry.  This is the first confirmed case of H9N2 in a person in Egypt. +
+
+ According to the Ministry of Health, 22 new cases of highly pathogenic H5N1 avian influenza virus were reported between January 9th and February 2, 2015, three of which were fatal.  The patients are between 1.6 and 75 years old, and 9 of them are children.  All cases, except one still being investigated, had contact with backyard or market poultry. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_03_02.html b/data/flu-report-html/usgs_avian_flu_report_2015_03_02.html new file mode 100644 index 0000000..1d496d0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_03_02.html @@ -0,0 +1,2149 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Mar 02, 2015 +

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+ + + News Update February 26, 2015 + + +

+
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+ Avian Influenza in Animals +
+
+ + Japan (HPAI H5N8) + +
+ According to a World Organisation for Animal Health report, a mallard found dead on February 13 in Izumi, Kagoshima Prefecture tested positive for the highly pathogenic H5N8 avian influenza virus.  A mallard found dead on January 19 at the same location had previously tested positive for the same strain. +
+
+ + USA (HPAI H5N2) +
+
+ Three additional cases of the highly pathogenic H5N2 avian influenza virus have been reported in wild birds.  A captive great horn owl in Canyon County, Idaho, a red-tailed hawk in Benton County, Washington, and a hunter harvested mallard all tested positive for the disease.  The USDA Animal and Plant Health Inspection Service in conjunction with State Department of Agriculture and Wildlife are continuing to conduct investigations and enhanced surveillance to prevent further spread of the disease. +
+
+ + USA (HPAI H5N8) + +
+ A peregrine falcon found dead in Grays Harbor County, Washington, a bald eagle found dead in Canyon County, Idaho and a hunter-harvested American wigeon in Clark County, Washington have tested positive for highly pathogenic avian influenza H5N8. +
+
+ + + Avian Influenza in Poultry + + +
+ + Hungary (HPAI H5N8) +
+
+ According to a World Organisation for Animal Health report, fattening ducks at a farm in Fuzesgyyarmat, Bekes County with 2,170 birds tested positive for the highly pathogenic H5N8 avian influenza virus.  Preliminary results suggest that the virus is closely related to the recent Eurasian H5N8 viruses.  To prevent further spread of the disease, all of the birds in the affected holding and in three nearby holdings will be killed and destroyed, and the areas thoroughly disinfected. +
+
+ + Myanmar (HPAI H5N1) + +
+ More than 1,400 chickens and 10,000 quail have died from three outbreaks of the highly pathogenic H5N1 avian influenza virus in Monywa District, Sagaing province.  To prevent further spread of the disease, 1,500 chickens and more than 20,000 quail have been culled.  The first outbreak of the virus in Myanmar was in the same region in 2006, but Myanmar has not had a HPAI H5N1 outbreak since 2012. +
+
+ + Nigeria (HPAI H5N1) + +
+ Ogun +
+ According to the Federal Ministry of Agriculture and Rural Development, reports of an outbreak of avian influenza at Otto Farms, owned by former President Olusegun Obasanjo, have been confirmed to be false.  Four farms affected in the state, which did not include Otto Farms, were quarantined, depopulated, and decontaminated.  In addition, surveillance of farms and live bird markets has been increased. +
+
+ Katsina +
+ According to Alhaji Musa Danhassan, the Vice Chairman of the Katsina State Poultry Farmers Association, the highly pathogenic H5N1 avian influenza has been confirmed at farms in Abukur village in the Rimi Local Government Area of the state.  Over 3,000 birds have died or been culled due to the disease.  A backyard farm with over 300 birds was also affected by the disease. +
+
+ + Palestinian Authority (HPAI H5N1) + +
+ According to a World Organisation for Animal Health report, birds at a farm in Qalqelia, Byat amin have tested positive for the highly pathogenic H5N1 avian influenza virus.  Of the 4,200 19-month-old birds, 100 died and the rest will be culled.  The farm will also be disinfected to prevent further spread of the virus.  It is believed the birds contracted the virus through contact with infected materials, such as feed or vehicles. +
+
+ + Vietnam (HPAI H5N1) + +
+ Birds in the village of Dai Hai, Ke Sach district of Soc Trang Province, have been confirmed to be infected with the highly pathogenic H5N1 avian influenza virus.  100 birds died, and the remaining 1000 were destroyed.  The source of the outbreak is unknown. +
+
+ + + Avian Influenza in Humans + + +
+ + China (LPAI H7N9) + +
+ The Health and Family Planning Commission of Guangdong Province reported an additional case of the lowly pathogenic H7N9 avian influenza virus in a 48-year-old woman from Shantou.  The woman is hospitalized and in critical condition.  This marks the 166th case of avian influenza in a human reported in the province since March 2013, and the 577th case in China. +
+
+ + Hong Kong (LPAI H7N9 ex China) + +
+ A 61-year-old man died of H7N9.  He is the third case and the first death of H7N9 detected in Hong Kong this year. All had a history of recent travel to China. The man had visited a wet market in Dongguan and had purchased chickens there. +
+
+ + Philippines (suspect avian influenza) + +
+ The Department of Public Health (DOH) reported a possible case of avian influenza virus in a 52-year-old male overseas worker from China.  A day after arriving in the Philippines, the patient experienced cough, fever, and stomach pains, and passed away a few days later.  An autopsy was not conducted due to fears of exposure to the virus, and the case was declared closed by the DOH without a final diagnosis.  The man had worked in China for six years as a musician and is suspected to have been in contact with live poultry. +
+
+ + Egypt (HPAI H5N1) + +
+ According to a Ministry of Health and Population statement, authorities have confirmed five new cases of the highly pathogenic H5N1 avian influenza virus in humans.  Cases include a 34-year-old man in Faiyum governorate, a 36-year-old man in Cairo governorate, a 38-year-old man and a 3-year-old girl from Asyut governorate, and a 27-year-old man from Minya governorate.  The man from Faiyum is still being treated, while the other four patients have been released.  The World Health Organization said that between November and February 23, a total of 108 human cases including 35 deaths have been confirmed in Egypt. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_03_06.html b/data/flu-report-html/usgs_avian_flu_report_2015_03_06.html new file mode 100644 index 0000000..ebade46 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_03_06.html @@ -0,0 +1,2120 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Mar 06, 2015 +

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+ + + News Update March 4, 2015 + + +
+
+ + WHO statement + +
+ In a statement released on February 26, the World Organisation for Animal Health (WHO) warned that currently avian influenza strains are co-circulating and swapping genetic material at an unprecedented level.  This amount of diversity and spread could create novel strains, threaten livelihoods, the food supply, and even human health.  The agency added that it is most concerned about the H5 and H7 strains because they can change rapidly and cause serious illness in poultry.  H9N2 also needs to be closely watched, as it had provided ?donor? genes to H5N1 and H7N2 strains and resulted in human infections in China and Egypt.  Though little is known about a new H5N6 strain, it has caused three human infections in China, two of which were fatal.  The WHO said the emergence of so many novel viruses has created a diverse gene pool, which could have unpredictable and potentially dangerous consequences for animal and human health. +
+
+ + CDC + +
+ According to a statement by the Centers for Disease Control and Prevention (CDC), the highly pathogenic H5 avian influenza viruses circulating in the US poses a low risk to human health at this time.  The H5 strain was first detected in wild birds in Washington state, and additional infections in wild birds with highly pathogenic H5N2, H5N8, and H5N1 have been reported in Colorado, Idaho, Oregon, Nevada, Washington, Utah, and as of this week, Minnesota.  While no human infections of these strains have been reported, similar viruses like Asian-origin H5N1 have infected people in the past. +
+
+ + Avian Influenza in Wild Birds (and captive gyrfalcons) + +
+ + USA (HPAI H5N8) + +
+ According to a World Organisation of Animal Health Report, additional cases of the highly pathogenic H5N8 avian influenza virus in wild birds have been reported in the states of Washington, Oregon, California, Utah, Idaho, and Nevada.  The cases included 2 captive gyrfalcons, a peregrine falcon, a bald eagle, and several hunter-harvested ducks, including: 4 American wigeon, a gadwall, an American green-winged teal, and 2 mallards. The USDA Animal and Plant Health Inspection Service is continuing to conduct an epidemiological investigation and enhanced surveillance.  To date, all enhanced surveillance and testing for avian influenza around affected premises has been negative for avian influenza. +
+
+ + Avian Influenza in Poultry + +
+ + Germany (LPAI H7N7) + +
+ An outbreak of low pathogenic H7N7 avian influenza has been reported at a turkey farm in Langen, in the Cuxhaven District of Niedersachsen.  100 birds died, and the other 23,400 were destroyed to prevent the virus from spreading.  In addition, no poultry or poultry meat has been moved from the farm and the area has been thoroughly disinfected. +
+
+ + Taiwan (HPAI H5) + +
+ The Council of Agriculture (COA) has placed a new regulation making it mandatory for poultry to be raised in enclosed spaces, in an effort to prevent contact with wild birds and stop the spread of avian influenza.  It is estimated that 4.2 million domestic poultry have been culled on 853 farms since the current outbreaks started.  Poultry farmers will be given six months (until September) to comply with the new regulation, after which violators will be subject to fines.  This mandate is in addition to current restrictions on the movement of birds on infected farms and disinfection requirements after culling.  The COA is also considering revising the poultry farm registration system to require the registration of poultry farms that have 500 birds or more, instead of the current 3,000. +
+ +
+ South Africa (LPAI H5N2) +
+
+ Additional cases of low pathogenic H5N2 avian influenza virus in three commercial ostrich farms in Oudtshoorn, Western Cape Province were reported to the World Organisation for Animal Health.  Of the 2,715 birds housed on the farms, 767 died.  The source of the outbreak is unknown.  To prevent further spread of the virus, the animals have been quarantined and movement restrictions inside the country have been put in place. +
+
+ + South Korea (HPAI H5N8) + +
+ According to a World Organisation for Animal Health Report, between last September and the end of January this year, there have been 65 outbreaks, which included 22 stand-alone and 43 clusters. Only177 birds died from the highly pathogenic H5N8 avian influenza virus, but over 2,500,000 were destroyed.  The destroyed birds included chickens, ducks, geese, and doves. The source of the outbreak is unknown, and authorities are still implementing epidemiological surveys.  In addition to culling, other control measures include quarantine and disinfection of infected farms, control of wildlife reservoirs, and movement restrictions inside the country. +
+
+ + Avian Influenza in Humans + +
+ + China (LPAI H7N9) + +
+ The Centre for Health Protection (CHP) of the Department of Health has reported three additional human cases of low pathogenic H7N9 avian influenza.  The patients include a 36-year-old woman from Guangdong Province, and two men aged 50 and 68 from Anhui Province. All three had contact with poultry and are currently in critical condition.  To date, 596 human cases of H7N9 have been reported by health authorities, with 179 cases in Guangdong alone.  To prevent the virus from spreading, health surveillance measures, such as thermal imaging systems, are in place for body temperature checks on inbound travelers.  CHP urges people to avoid contact with live poultry and their droppings. +
+
+ + Egypt (HPAI H5N1) + +
+ According to the health ministry, a 16-year-old-girl in Shargiya governorate and a 33-year-old woman in Cairo have died from the highly pathogenic H5N1 avian influenza virus.  A two-year-old girl from Beheira governorate was cured of the disease.  This brings the total number of deaths from H5N1 this year to ten, and 11 cases are currently under treatment.  Most cases have occurred in rural areas where villagers tend to raise poultry in their homes. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_03_13.html b/data/flu-report-html/usgs_avian_flu_report_2015_03_13.html new file mode 100644 index 0000000..b06bc5d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_03_13.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Mar 13, 2015 +

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+ + + News Update March 12, 2015 + +
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+ + Avian Influenza in Poultry + +
+ + USA (HPAI H5N2) + +
+ Asbury, Jasper County, MO +
+ According the Missouri Department of Agriculture, the highly pathogenic H5N2 avian influenza virus has been confirmed at a turkey farm in Asbury, Jasper County housing 30,100 birds.  The flock experienced high mortality, with 3000 birds died in a 24 hour period. This marked the first time that H5N2 had been detected in Missouri. A 10 km quarantine zone has been established, and because of the farms location, the zone extends into portions of Kansas. +
+
+ Fortuna, Moniteau County, MO +
+ A second case of highkly pathogenic H5N2 avian influenza was reported a day later at a facility in Fortuna, Moniteau County housing 21,000 turkeys.  The premise is a contract farm for Cargill Inc. The remaining birds on both the Asbury and Fortuna facilities will be culled to prevent further spread of the disease.  Surveillance and testing are also underway at nearby farms to ensure the virus has not spread. +
+
+ Boone County, AR +
+ The highly pathogenic H5N2 avian influenza was confirmed at a turkey farm in Boone County. The farm, along with the Asbury farm in Missouri, is a contract farm that supplies to Butterball LLC, the largest turkey producer in the U.S.  The disease, which spread into the southeast after appearing in a migratory route along the Mississippi River, raises concerns for the future of the poultry industry. +
+
+
+ + Avian Influenza in Humans + +
+ + China (LPAI H7N9) + +
+ Researchers warn that the highly pathogenic H7N9 avian influenza virus is fast-mutating and could cause a pandemic.  At least 48 different sub-types have been discovered through genome sequencing.  This genetic diversity can increase the virus?s ability to spread among humans, although there has been no evidence yet of sustained human-to-human transmission which is a prerequisite for pandemic spread.  H7N9 can spread from birds to humans more easily than the H5N1 strain, which has infected 784 people in 16 countries with 492 deaths since its appearance in 2003, whereas H7N9 has infected 596 persons since its emergence two years ago. +
+
+ + Egypt (HPAI H5N1) + +
+ Two women from Menoufia and Sharqui governorates have died of the highly pathogenic H5N1 avian influenza virus, bringing the total number of deaths this year to 13.  Three cases, including a two-year-old child from Cairo and two men in their 40s from the Delta area, are still under treatment. Between December 2014 and February 2015, a total of 101 human cases have been reported in the country with 31 fatalities.  Egypt is now the country with the most human cases of H5N1, accounting for 37% of all cases worldwide. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_03_20.html b/data/flu-report-html/usgs_avian_flu_report_2015_03_20.html new file mode 100644 index 0000000..6024e50 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_03_20.html @@ -0,0 +1,2116 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Mar 20, 2015 +

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+ + Avian Influenza in Animals + +
+ + USA (HPAI H5N2) + +
+ Following recent reports of highly pathogenic H5N2 avian influenza spreading from Minnesota to Arkansas and Missouri, it was initially thought that the virus was carried over the migratory route from Minnesota to the Gulf of Mexico by wild birds. However, this theory is doubted by many wildlife experts, as during this time of year birds tend to migrate from south to north, opposite of the direction the infection spread.  Thus far all wild birds collected have tested negative for the virus. If they are determined to be the source, officials are still unsure how the flu strain passed to the Missouri and Arkansas poultry facilities which are entirely indoors. +
+
+
+ + Sweden (HPAI H5N8) + +
+ On March 20th, Sweden confirmed that two swans that were found dead in Stockholm tested positive for H5N8. The Swedish Board of Agriculture said the swans probably died from other causes, even though they carried the HPAI virus. This is the same strain that has hit neighboring European countries. "The find in Stockholm will not lead to us taking any precautions other than those that already apply, but of course we pay close attention to any developments," Ingrid Eilertz of Sweden's Board of Agriculture said in a statement. "It is, as always, important that those keeping poultry or other birds are mindful of hygiene and disease protection so that the infection does not spread to their pets," she added. +
+
+
+ + HPAI H5N8 + +
+ While humans have so far been unaffected by the highly pathogenic H5N8 avian influenza, a new study shows that ferrets can become infected with the disease when given a large enough dose intra-tracheally. This raises some concern of future possible human infection, as ferrets have similar lung physiology and cough and sneeze when infected as humans do. +
+
+
+ + Avian Influenza in Poultry + +
+ + India (HPAI H5N1) + +
+ An outbreak of highly pathogenic avian influenza virus was confirmed in the Amethi district after more than 350 chickens and ducks died in villages in the Shuklaganj area of the district. To prevent further spread of the disease, over 750 birds, including chickens, ducks, and pigeons have been culled. Poultry farms in the district are also being surveyed, and rapid response teams are on standby to quickly cull and disinfect affected areas. +
+
+ + Netherlands (LPAI H7N7) + +
+ A free-range farm near the town of Barneveld has tested positive for low pathogenic avian influenza virus H7N7.  To prevent the disease from spreading, 27,000 chickens at the farm have been destroyed.  The government has also imposed a ban on poultry transport for farms within a 1 km radius. +
+
+ + USA (HPAI H5N2) + +
+ Kansas +
+ According to the United States Department of Agriculture's (USDA) Animal Plant Health Inspection Service (APHIS), an outbreak of the highly pathogenic H5N2 avian influenza virus has been confirmed in a backyard chicken and duck flock in Leavenworth County.  This marks the first finding of highly pathogenic avian influenza in the Central Flyway, but the location is immediately adjacent to the Mississippi Flyway. To prevent further spread of the virus, the premises were quarantined and the birds have been culled. Additional surveillance and testing are also underway in the area. +
+
+
+ + Vietnam (HPAI H5N1) + +
+ An additional outbreak of the highly pathogenic H5N1 avian influenza virus has been reported at a farm in the Vinh Long Province. 770 birds died, and the remaining 830 were destroyed and the premises disinfected. The source of the outbreak is unknown.  This marks the third case of avian influenza in Vietnam's southern provinces in the past month, with 1,100 chickens and 1,600 ducks culled. +
+
+ + Vietnam (HPAI H5N6) + +
+ An additional case of the highly pathogenic H5N6 avian influenza virus has been reported on a farm in the Hai Tinh Gia district which houses 103 ducks and 190 chickens. Although not as well-spread as H5N8 and H5N2, the H5N6 strain causes particular concern because of its ability to infect humans. +
+
+
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+ URL: http://www.nwhc.usgs.gov +
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+ Page Last Modified: +May 19, 2016 +
+
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_03_27.html b/data/flu-report-html/usgs_avian_flu_report_2015_03_27.html new file mode 100644 index 0000000..8b4452b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_03_27.html @@ -0,0 +1,2120 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Mar 27, 2015 +

+
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+

+ + + News Update March 26, 2015 + + +
+
+ + CDC update on HPAI H5 in the US + +
+ Several strains of highly pathogenic H5 avian influenza virus have been reported in domestic poultry, captive and free-living wild birds.  The first detection was in December 2014, and reports have continued to the present.  No human infections have yet been detected, although similar viruses have infected people in other countries, causing illness and in some cases death.  Most human infections have been caused from contact with infected birds or their secretions.  In the guidance that was updated this week, the Centers for Disease Control (CDC) recommends that people avoid contact with wild birds, dead or ill poultry, and surfaces that have been contaminated with feces.  People who have come into contact with infected birds should monitor themselves for symptoms, and health care providers should notify health departments of potential infections. +
+
+ + Avian Influenza in Animals + +
+ + Bulgari (HPAI H5N1) + +
+ Twenty one Delamtian pelicans have died at the Sebarna Nature Reserve in Silistra province in Bulgaria. Highly pathogenic avian influenza H5N1 has been detected in two pelicans that were tested. The outbreak comes three weeks after the same virus was detected in a pigeon and a black-headed gull in adjacent Burgas province. +
+
+ + India (HPAI H5N1) + +
+ A case of the highly pathogenic H5N1 avian influenza has been confirmed in two dead wild house crows (Corvus splendens) in the Haliapur area of Sultanpur district.  To prevent further spread of the virus, poultry farms within a 1 km radius are being scanned, and those within 20 km are under surveillance.  This follows an outbreak in Amethi on March 13, in which 350 ducks, hens, and pigeons died and 850 were culled. +
+
+ + USA (HPAI H5N2) + +
+ Highly pathogenic avian influenza H5N2 has been detected in a Canada goose in Montana. A sick Canada goose was collected near Cheyenne, MT had testing has now confirmed the bird was infected with the same strain of H5N2 that has been spreading since 2014 in the US. The detection is the first for the state of Montana, and is also the first for a wild bird in the Central Flyway. +
+
+ + Avian Influenza in Poultry + +
+ + Palestinian Territories (HPAI H5N1) + +
+ According to the Israeli Agriculture Ministry, an outbreak of highly pathogenic avian influenza H5N1 virus was discovered in the village of Katana near Jerusalem at a small backyard farm with egg-laying hens.  Facilities within a 10 km radius are under inspection, and heightened supervision at crossing points between the Palestinian Authority and Israel is underway.  Avian influenza was also been identified in January and February at a farm in Moshav Avial in Israel and nearby Palestinian Territories. +
+
+ + USA (MN HPAI H5N2) + +
+ Officials at the Minnesota Department of Natural Resources said they have ruled out wild birds as a source of the highly pathogenic H5N2 avian influenza virus that affected a turkey flock Pope County earlier this month.  Migratory wildfowl were not in the area during the outbreak, and 148 fecal samples collected from resident wild birds were negative for the virus, eliminating wild birds as a potential cause.  Other experts disagree, arguing that the strain found in Pope County has the same makeup as strains found in other parts of the U.S. that came from wild birds and that the virus can?t be migrating among turkey populations, as it is highly lethal and would kill the birds. +
+
+ + KS (LPAI) + +
+ According to the Kansas Department of Agriculture, a commercial turkey farm in Crawford County has tested positive for lowly pathogenic avian influenza. The subtype has not been identified.  The flock will be culled and the disposal site will be monitored to prevent further spread of the disease.  Because it a lowly pathogenic strain, no quarantine will be issued. +
+
+ + Avian Influenza in Humans + +
+ + China (HPAI H5N1) + +
+ The Chinese National Health and Family Planning Commission has reported two additional cases of the highly pathogenic H5N1 avian influenza in humans.  The patients are a 34-year-old man and a 17-year-old from Kunming, Yunnan Province.  Both have been hospitalized and are in stable condition.  The most recent data from The World Health Organization, dated March 3, puts the total number of human cases of H5N1 at 784 with 429 deaths since 2003. +
+
+ + Egypt (HPAI H5N1) + +
+ According to Reda Aish, director of the Preventive Medicine Department, eight suspected human cases of the highly pathogenic H5N1 avian influenza have been reported in Monufiya this week.  A 63-year-old man showing symptoms is also suspected to have contracted the disease.  In Egypt there have been 14 deaths so far this year and 33 since the start of the winter season.  The virus is facilitated by many unlicensed poultry farms and those who breed birds in their houses. +
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+ Page Last Modified: +May 19, 2016 +
+
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_04_03.html b/data/flu-report-html/usgs_avian_flu_report_2015_04_03.html new file mode 100644 index 0000000..637bfdb --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_04_03.html @@ -0,0 +1,2115 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Apr 03, 2015 +

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+ News Update April 3, 2015 +

+
+

+ + Avian Influenza in Animals + +

+

+ + Romania (HPAI H5N1) + +
+ On March 30, the National Sanitary Veterinary and Food Safety Authority of Romania reported an outbreak of highly pathogenic avian influenza virus H5N1 among a colony of approximately 250 Dalmatian pelicans on Ceaplace Island, Sinoe Lake, at the border of Tulcea and Constanta Counties. Local officials discovered and reported 64 dead birds on March 25, and no other birds in the area were observed to have clinical signs. Control measures applied include control of wildlife reservoirs, screening, and zoning. The source of the outbreak is unknown. An additional 108 pelicans have died at the colony and “bird flu” is suspected as the cause. +
+

+

+ + USA (HPAI H5N2) + +
+ The Montana Department of Livestock reported on March 31 the first documented case of HPAI H5N2 bird flu in Montana, found in a dead captive gyrfalcon from Columbia Falls in Flathead County. The gyrfalcon may have been exposed to the virus by consuming parts of a duck hunted in December. The falconer has about 50 other captive birds, which will all be tested for avian influenza. The Department of Livestock will monitor the flocks of poultry producers in the area. +

+

+ + USA (HPAI H5N1) + +
+ On April 2, the U.S. Geological Survey and the U.S. Department of Agriculture published the genetic analysis of a mixed-origin HPAI H5N1 avian influenza virus in the journal Genome Announcements. This novel virus was discovered in a green-winged teal in Washington State that was sampled at the end of 2014. The virus was found to contain four genes from the Eurasian HPAI H5N8 and four genes from North American low pathogenic avian influenza from wild birds. Although also highly pathogenic in poultry, this H5N1 virus is different from the well-known Asian H5N1 HPAI virus that emerged in 1996. +

+

+ + Avian Influenza in Poultry + +

+

+ + Burkina Faso (HPAI H5N1) + +
+ On April 1, government officials in Burkina Faso announced an outbreak of highly pathogenic avian influenza virus H5N1, which has killed about 115,000 poultry over the past two months, in both traditional and modern poultry farms in Sanguié Province and Kadiogo Province. The government will be reactivating the response strategy used to deal with the outbreak that last occurred in 2006. +

+

+ + China (HPAI H5N6) + +
+ On April 3, the China Animal Disease Control Centre reported an outbreak of HPAI H5N6 among geese on a farm in Wujin District, Jiangsu Province. Of 260 cases, 93 birds died, and the remaining 22,576 susceptible birds were culled. Other control measures applied include quarantine, movement control inside the country, screening, zoning, and disinfection of the infected premises. The source of the outbreak is unknown. +

+

+ + Netherlands (LPAI H7) + +
+ On March 27, the Netherlands Ministry of Economic Affairs reported an outbreak of low pathogenic avian influenza virus H7 among free range layer hens on a farm in Tzummarum, Friesland Province. The 22,273 birds were destroyed, and a 1-kilometer restriction zone was established around the farm. Another facility, within the 1-kilometer zone, was screened. Other control measures applied include movement control inside the country. The source of the outbreak is unknown. +

+

+ + Palestinian Territories (HPAI H5) + +
+ On April 2, the Palestinian Territories Ministry of Agriculture reported an outbreak of HPAI H5 among a flock of 1,200 poultry in a backyard in Jabalia, Gaza. Of the 1,200 birds, 1,100 died and the remaining 100 were culled. Other control measures applied include quarantine, movement control inside the country, screening, zoning, disinfection of the premises, and dipping/spraying. The source of the outbreak is unknown. +

+

+ + USA (HPAI H5N2) + +
+ The U.S. Department of Agriculture has reported cases of HPAI H5N2 in poultry flocks in Minnesota, South Dakota, and Montana. The fourth and fifth confirmed cases in Minnesota occurred in a commercial turkey farm with 21,000 birds in Nobles County and a turkey farm with 71,000 birds in Stearns County. On April 2, the first case of HPAI H5N2 in South Dakota was confirmed in commercial turkey flock of 53,000 birds in Beadle County. HPAI H5N2 was confirmed on April 2 in a backyard mixed-poultry flock in Judith Basin County, Montana. The flocks have been quarantined and will be culled, and nearby farms will be checked. The Minnesota Department of Natural Resources has been looking for signs of HPAI H5N2 in wild birds in the areas around the affected Minnesota farms, but has so far found no evidence of the virus. +

+

+ + Avian Influenza in Humans + +

+

+ + Indonesia (HPAI H5N1) + +
+ On March 31, the Indonesian Ministry of Health confirmed two fatal cases of H5N1 in a 40-year-old man and his 2-year-old son from Tangerang, Banten Province. The boy was treated in a private hospital March 11-16, but continued to experience symptoms at home. The patient was referred to other private hospitals, and on March 26 was admitted to and died at Friendship Hospital. Laboratory test results on March 26 confirmed H5N1. The man received outpatient treatment on March 17 at a private hospital. On March 26 he received emergency room treatment at another private hospital, returned to the hospital later that day and was treated with a working diagnosis of pleural effusion dextra et causa pneumonia. He was admitted to the intensive care until on March 23, and on March 24 he was diagnosed with suspected bird flu and died. Laboratory results on March 25 confirmed H5N1. Media reports suggest the two patients’ infections are linked to their recent visit to a farm where poultry had recently died. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_04_17.html b/data/flu-report-html/usgs_avian_flu_report_2015_04_17.html new file mode 100644 index 0000000..e35bce0 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_04_17.html @@ -0,0 +1,2146 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Apr 17, 2015 +

+
+ + newer + +
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+

+

+ + + News Update April 16, 2015 + + +
+
+ + Avian Influenza in Animals + +
+ + Hong Kong (HPAI H5N6) + +
+ A peregrine falcon found dead at a construction site on 4/9 has tested positive for HPAI H5N6. This is the first time that HPAI H5N6 has been found in a wild bird. The location of the construction site is located near the Ma Po Nature Reserve, but it is unclear if that is where the falcon was exposed. +
+
+ + USA Canine Influenza (H3N8) + +
+ A canine flu outbreak has sickened at least 1,000 dogs in Illinois, Wisconsin, Ohio and Indiana.  Tests have identified the both a new strain of H3N2 that has shown up for the first time from Asia and the H3N8 strain that has circulated in the US since 2004.  Both viruses cause persistent coughing, runny nose and fever, and the H3N2 strain has been associated with some deaths.  Veterinarians say neither strain is related to bird flu. +
+
+ + Avian Influenza in Poultry + +
+ + Bhutan (HPAI H5N1) + +
+ HPAI H5N1 has been detected in the deaths of 16 birds in a small backyard flock in a district within the capital city of Thimphu in the Kingdom of Bhutan. The kingdom has not had an H5N1 outbreak since April, 2013. +
+
+ + India (HPAI H5N1) + +
+ According to the Telangana government, the highly pathogenic H5N1 avian influenza virus has been discovered in the Ranga Reddy district at a poultry farm in Thorur village in Hayathnagar.  10 birds were sent for testing, of which five tested positive and the rest are still being processed. To prevent further spread of the disease, around 200,000 birds within a 10 km radius will be culled.  To date, 41,040 birds have died and 51,888 have been culled.  A ban has also been placed on the sale of poultry and eggs in Hayathnagar. +
+
+ + Taiwan (HPAI H5N2) + +
+ According to a World Organisation for Animal Health report, two new outbreaks of the highly pathogenic H5N2 avian influenza virus have been reported in Yunlin County.  The first outbreak was in Shuilin Township in a flock of 3,000 geese, of which 2,112 died and the rest were culled.  Three days later the virus was discovered in a turkey flock in Kouhu Township, where all 2,500 birds died.  In addition to culling, the farms have been placed under movement restrictions and disinfected.  All poultry farms within a 3 km radius are under intensified surveillance for three months. To date, a total of 740,221 birds have died and 1,133,473 have been destroyed in Chiayi County, Changhua County, Hsinchu City, Kaohsiung County, Pingtung County, Taichung City, Tainan City, Taoyuan County, and Yunlin County. +
+
+ + Vietnam (HPAI H5N1) + +
+ An additional outbreak of the highly pathogenic H5N1 avian influenza virus has been reported in a village in the Phong Dien District of Can Tho.  Of the 900 birds, 399 died and the rest were destroyed to prevent the disease from spreading.  The source of the outbreak is unknown. +
+
+ + USA (HPAI H5N2) + +
+ Since it was first discovered in Pope County, Minnesota in early March, the highly pathogenic H5N2 avian influenze virus has continued to spread.  To date, nine states have been affected, with the Minnesota turkey industry particularly at risk, since turkeys are highly susceptible to the virus.  The virus usually takes only two to four days to spread through a barn.  Minnesota alone has lost over 900,000 birds to the virus, with the biggest outbreak affecting 310,000 birds at a farm in Meeker County owned by Hormel Foods.  The virus is believed to have been tracked from Asian waterfowl over the Bering Strait, where it mixed with a North American low-pathogenic strain. +
+
+ Iowa +
+ The United States Department of Agriculture Animal and Plant Health Inspection Service (USDA-APHIS) has reported a case of the highly pathogenic H5N2 avian influenza in a commercial turkey flock in Buena Vista County with 27,000 birds.  In addition to culling the surviving birds, the premises will be quarantined and thoroughly disinfected to prevent further spread of the disease. +
+
+ North Dakota +
+ The first case of the highly pathogenic H5N2 avian influenza in North Dakota has been confirmed in a commercial turkey flock with 40,000 birds in Dickey County.  The farm has been quarantined and depopulated. +
+
+ South Dakota +
+ A farm with 46,000 turkeys in McPherson County and one with 53,000 turkeys in McCook County are the state?s third and fourth HPAI H5N2-affected premises. +
+
+ Wisconsin +
+ The U.S. Department of Agriculture (USDA) has confirmed the first case of the highly pathogenic H5N2 avian influenza virus in Wisconsin.  The outbreak occurred in a commercial flock in Jefferson County with 200,000 chickens.  This also marks the first time the strain has infected chicken; previously, it had only infected turkey flocks. Two additional outbreaks were reported at a backyard flock with 40 mixed breed birds in Juneau County and a commercial turkey flock with 126,000 birds in Barron County two days later.  H5N2 has been confirmed in the Barron case, but the complete identification has yet to be completed in the H5 virus in Juneau. In addition to culling and quarantine, surveillance and testing are underway at nearby properties to ensure the virus has not spread. +
+
+ Minnesota +
+ Twelve additional cases of the highly pathogenic H5N2 avian influenza virus have been reported in turkey flocks in Minnesota, bringing the total number of confirmed farms in the state to 26. Over 1.6 million birds are affected in 14 counties. The affected flocks are in Kandiyohi County 4 ? 30,000 birds, La Sueur County ? 21,500 birds, Meeker County 2 ? 25,000 birds, Meeker County 3 ? 20,000 birds, Stearns County 5 ? 76,000 birds, Swift County 1 ? 160,000 birds, Swift County 2 ? 154,000 birds, Redwood County ? 56,000 birds, Ottertail County - 21,000, Roseau County - 26,000, Kandiyohi County 5 - 152,000, and Sterns County 6 - 67,000.  All of the premises were placed under quarantine and depopulated to prevent the disease from spreading. +
+
+ South Dakota +
+ The first case of HPAI H5N2 has been reported by USDA on thie website of a commercial turkey farm in Roberts County, South Dakota. The date of confirmation is listed as 4/15/15, and the virus similar to the H5N2 found in recent outbreak. No additional information is available at this time. +
+
+ + Avian Influenza in Humans + +
+

+

+ + China +
+
+ According to the National Health and Family Planning Commission Disease Prevention and Control Bureau, 18 people have died from the highly pathogenic H7N9 avian influenza in March. +
+
+

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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_04_24.html b/data/flu-report-html/usgs_avian_flu_report_2015_04_24.html new file mode 100644 index 0000000..ce399d6 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_04_24.html @@ -0,0 +1,2133 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Apr 24, 2015 +

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+ + + News Update 4/23/2015 + + +

+

+ + + Avian Influenza in Poultry +
+
+
+ + India (HPAI H5N1) + +
+ H5N1 avian influenza has been detected in the poultry unity of ICAR (Indian Council of Agriculture Research), Lamphelpat, Imphal.  Following the confirmation of HPAI H5N1, all areas within a 1km and 10km radius from the epicenter have been declared infected, and all birds within the infected zone are to be culled.  So far, 900 chicks and 6 adult ducks have been culled, and 1,550 eggs have been destroyed. +
+
+ + Ontario, Canada (H5N2) + +
+ A second case of H5N2 avian influenza has been confirmed on a farm in Oxford County, Ontario.  The chicken farm has been placed under quarantine and further testing is underway.  One of two barns with 29-week old broiler-breeders was affected. The farm is located outside of the previous surveillance zone. +
+
+ + Niger (HPAI H5N1) + +
+ Highly pathogenic H5N1 avian influenza has been confirmed in Maradi, Niger by the World Organization for Animal Health.  The farm had 2,440 birds, and 2,290 have died from the disease.   The source of the outbreak is unknown. +
+
+ + Taiwan (HPAI H5N2) + +
+ A new outbreak of highly pathogenic H5N2 avian influenza has been confirmed in Pingtung County, Taiwan.  The affected farm suffered from abnormal mortality on April 3.  590 out of the flock of 2,500 geese died, and the remaining 1,910 have been destroyed.  The farm was placed under movement restriction, and cleaning and disinfection have been conducted.  Surrounding poultry farms will remain under surveillance. +
+
+ + Taiwan (LPAI H5N2) + +
+ There have been seven outbreaks of low-pathogenic H5N2 avian influenza in Taiwan between January 12 and February 25 of this year.  Mortalities were observed in one farm in Changhua, one farm in Yunlin, one farm in Chiayi, two farms in Pingtung, and two farms in Tainan City.  Four outbreaks were in chickens, and three were in native chickens.  244,440 birds overall were affected, of which 75,319 died and 168, 521 were destroyed.  The farms underwent culling, cleaning, and disinfections, and were placed under movement restrictions.  Surrounding poultry farms will remain under surveillance. +
+
+ + South Africa (LPAI H5N2) + +
+ A new outbreak of low-pathogenic H5N2 avian influenza has been detected in a farm in Oudtshoorn, South Africa.  2,221 birds out of a total flock of 6,204 have been affected by the virus.  Measures taken include quarantine, movement controls, and screening.  There has been no vaccination or treatment of the affected birds. +
+
+ + South Korea (HPAI H5N8) + +
+ South Korea has not reported highly pathogenic avian influenza outbreaks since March 13, when 47 premises were declared infected with HPAI H5N8.  This week, two chicken farms in Pocheon, Gyeonggi province were reported to be positive for H5N8. No additional information was provided in the short report. +
+
+ + USA (HPAI H5N2) + +
+ Iowa +
+ A new outbreak of H5N2 avian influenza has been detected at a farm in Osceola County, Iowa.  The farm has about 25 barns and a total of 3.8 million chickens, nearly 10 percent of the egg-laying hens in the state.  Birds in three of the barns have been killed so far to stop to spread of the virus, but the birds in all the barns are planned to be culled. +
+
+ Minnesota +
+ Highly pathogenic H5N2 avian influenza has been detected in an additional 16 flocks in Minnesota this week.  The infected farms are as follows: 34,500 turkeys in Otter Tail County, 35,500 turkeys in Redwood County, seven farms in Kandiyohi County containing, 23,000, 9000,  75,000 19,100,  34,500, 61,000 and a final Kandiyohi County farm with an unknown number of turkeys.  There are also three outbreaks in farms in Stearns County, one with 28,600 turkeys, one with 72,500 turkeys, and one with an unknown number of turkeys, and three final outbreaks in Meeker County farms with 58,900 turkeys, 10,700 turkeys, and an unknown number of turkeys.  H5N2 avian influenza has been discovered in a farm southeast of Hawley, Minnesota.  The farm contains about 300,000 chickens. A backyard flock with 151 mixed poultry in Pipestone County has been confirmed infected with H5N2. All affected areas have been quarantined and birds on the property will be culled. +
+
+ Wisconsin +
+ H5 avian influenza has been detected in second chicken farm in Jefferson County, a turkey farm in Chippewa County and a turkey farm in Barron County.  The Jefferson County farm has 800,000 birds, the Chippewa County farm has 87,000 and the Barron County has 90,000.   All birds that have not died from the virus will be culled.  All three farms are not yet officially confirmed as HPAI H5N2 at the present time. +
+
+ Similarly, a farm with 34,000 turkeys in Sac County, IA,  and a farm with 69,000 turkeys and 2000 chickens in LaMoure Ciounty, ND have similarily tested positive for H5 and are awaiting final confirmation by NVSL. +
+
+ + + Avian Influenza in Humans + + +
+ + Egypt + +
+ Six additional cases of H5N1 avian influenza have been confirmed in Egypt, bringing the total to at least 143 cases since the beginning of 2015.  The identity of the infected individuals, as well as any symptoms and treatment information, is unknown. +
+

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+ Page Last Modified: +May 19, 2016 +
+
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_05_01.html b/data/flu-report-html/usgs_avian_flu_report_2015_05_01.html new file mode 100644 index 0000000..8e5f45e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_05_01.html @@ -0,0 +1,2094 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ + older + + +

+ Avian Influenza Archive from May 01, 2015 +

+
+ + newer + +
+

+ News Update April 30, 2015 +

+
+

+ + Avian Influenza in Animals + +

+

+ USA (HPAI H5N2) +
+ Kentucky +
+ According the United States Department of Agriculture’s Animal and Plant Health Inspection Service, highly pathogenic H5N2 avian influenza has been confirmed in two wild birds, a goose and a duck, in McCracken County in western Kentucky. This marks the furthest east within the Mississippi flyway where the virus has been identified. +
+

+

+ Minnesota (HPAI H5N2) +
+ A Cooper’s hawk found dead in Yellow Medicine County is the first wild bird in the state to test positive for the highly pathogenic H5N2 avian influenza virus. The bird is believed to have contracted the virus through eating infected bird, but although wild waterfowls such as dabbling ducks and goose are known capable of being infected with the virus, they are usually too large for a Coopers hawk, whose normal prey are small passerines. Scientists say the discovery of the hawk does not indicate that wild birds are the direct cause of avian influenza in poultry, and Yellow Medicine County has not reported any cases of infected farms. The testing of 2,200 other wild bird samples collected this far this spring have been negative for the high path virus. +

+

+ + Avian Influenza in Poultry + +
+ Taiwan (HPAI H5N2, H5N8) +
+ According to World Organisation for Animal Health (OIE) report, three new cases of the highly pathogenic H5N2 avian influenza virus have been confirmed. The outbreaks include a goose farm with 2,600 birds in Yunlin County, a farm with 23,000 native chickens also in Yunlin County, and a native chicken abattoir with 180 birds in Pingtung County. A total of 13,137 birds died and the rest were culled to prevent the disease from spreading. Two cases of the highly pathogenic H5N8 avian influenza virus were also reported in a goose farm in Yunlin County with 5,740 birds and another in Changhua County with 1,4000 geese. A total of 3,695 birds died and the rest were destroyed. In addition to culling, all five facilities have been placed under movement restriction and farms within a 3 km radius are under intensified surveillance. +

+

+ Canada (HPAI H5N2) +
+ A case of the highly pathogenic H5N2 avian influenza virus has been reported at a turkey farm in Oxford County with 8,000 birds. This marks the third case in southwestern Ontario. The farm was within a quarantine zone imposed after the virus was discovered at a nearby chicken facility, and scientists are unsure if the virus got past biocontrols or was present before the quarantine was put in place. To date, over 80,000 birds have died or been destroyed due to the virus. +

+

+ USA (HPAI H5N2) +
+ Iowa +
+ According to the Iowa Department of Agriculture and Land Stewardship, five more cases of highly pathogenic H5N2 avian influenza virus have been confirmed. Two outbreaks were reported at egg-laying operations in O’Brien County and at a laying operation and a turkey facility in Sioux County, marking the first in these areas. The fifth outbreak occurred at a pullet facility raising layer chickens in Osceola County. In total, the outbreaks affected 9.5 million layers, 250,000 pullets, and 80,000 turkeys. +

+

+ Minnesota +
+ The highly pathogenic H5N2 avian influenza has been reported at 11 more turkey farms in Minnesota. 6 of the new cases were in Kandiyohi County, the state’s largest turkey producing county, which has reported a total of 25 outbreaks. So far, the virus has affected 56 farms in 18 counties. At least 3.46 million birds have died or been culled to prevent the disease from spreading. +

+

+ Wisconsin +
+ A seventh case of highly pathogenic H2N2 avian influenza virus has been reported in a 108,000 turkey flock in Barron County. Over a 15 day period, there have been three cases in Barron County, two in Jefferson County, and one each in Chippewa County and Junea County. About 1.3 million birds have been affected. A ban on poultry movement has been imposed in the four infected counties. +

+

+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ A 50-year-old man in Luotian County, Hubei Province has been confirmed to have contracted the low pathogenic H7N9 avian influenza virus. The man, a poultry farmer and butcher, is in the hospital in stable condition. This is the first case in Hubei since 2013 and the first case in Central China in 2015. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_05_11.html b/data/flu-report-html/usgs_avian_flu_report_2015_05_11.html new file mode 100644 index 0000000..8ce0b79 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_05_11.html @@ -0,0 +1,2075 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 11, 2015 +

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+ News Update May 11, 2015 +

+
+

+ + Avian Influenza in Wild Birds + +
+ Hong Kong (HPAI H5N6) +
+ In Hong Kong, highly pathogenic H5N6 avian influenza has been detected in a wild Oriental Magpie-Robin, which later died of the virus. It is unknown how the bird contracted the virus, and there has been both screening and disinfection of the affected areas. +
+

+

+ USA (Wisconsin, HPAI H5N2) +
+ H5N2 avian influenza has been confirmed in a snowy owl in Oconto County. The owl is the first wild bird in Wisconsin to test positive for this virus, and one of 11 dead wild birds that are being tested. How the owl contracted the virus is currently unknown, but it is the 60th wild bird in the United States to test positive for the highly pathogenic virus strain. +

+

+ + Avian Influenza in Poultry + +
+ Turkey (bird flu) +
+ Kastamonu (HPAI H5N1) +
+ Avian influenza has been detected in 127 backyard poultry in Kastamonu, Turkey. 35 animals died of the virus, and 92 were destroyed. Other measures influence quarantine, movement controls, cleaning and disinfection of the affected holding areas, and monitoring within a 10km radius. +

+

+ Edincik (bird flu) +
+ Poultry facilities in Balikesir province are quarantined after the deaths of at least 40,000 chickens that tested positive for bird flu. All remaining chickens have been euthanized, for a final death count of 70,000, and disinfection and hygiene measures have been increased. +

+

+ USA +
+ Birds in a backyard flock of mixed poultry in Lewis County, Missouri have been infected with highly pathogenic H5N2 avian influenza. 10-12 birds in the flock tested positive for the disease, leading to the quarantine and destruction of 130 birds on the property. +

+

+ Two more farms in Iowa have tested positive for avian influenza, a chicken farm in Osceola County with 100,000 birds and a turkey farm in Cherokee County with an unknown number of birds. With these new cases, the total bird flu count in Iowa has risen to 37 sites, spread across 11 counties. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_05_15.html b/data/flu-report-html/usgs_avian_flu_report_2015_05_15.html new file mode 100644 index 0000000..1629a37 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_05_15.html @@ -0,0 +1,2084 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 15, 2015 +

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+ + + News Update May 14, 2015 + +
+
+ + Avian Influenza in Animals +
+
+ Mexico (HPAI H7N3) +
+
+ According to a World Organisation for Animal Health (OIE) report, the highly pathogenic H7N3 avian influenza virus was confirmed in 8 wild birds (6 plain chachalacas and 2 clay-colored thrushes) found dead in the Zapotal Nature Reserve near Tuxtla Gutierrez, Chiapas. The last HPAI H7N3 outbreak in Mexico occurred on a farm in the adjacent state of Oaxaca in March. An investigation within a 10-km radius around the reserve has been established. +
+
+ + Avian Influenza in Poultry +
+
+ + Israel (HPAI H5N1) +
+
+ An outbreak of the highly pathogenic H5N1 avian influenza virus was reported in a flock of 10- week-old turkeys at a farm in the city of Acco in the northern district of Hazafon.  One thousand of the birds died and the remaining 12,000 birds were culled.  In addition to culling, the farm has been quarantined and movement control measures have been put in place. The virus in previous outbreaks of H5N1 in Israel and the Palestinian Territories were related to those in Egypt. The source of the outbreak is unknown and epidemiological investigation is still underway. +
+
+ + Taiwan (HPAI H5N2) +
+
+ Nine additional cases of the highly pathogenic H5N2 avian influenza virus have been confirmed at poultry farms in Yunlin County, Pingtung County, and Kaohsiung City.  A total of 62,780 geese, chicken, and ducks were affected, of which 22,552 died and the remaining 40,228 were culled to prevent further spread of the disease.  In addition to culling, the affected farms have been put under movement restriction and nearby farms within a 3-km radius are under intensified surveillance. +
+
+ + USA (HPAI H5N2) +
+
+ An additional 14 cases of the highly pathogenic H5N2 avian influenza virus have been confirmed at commercial chicken and turkey farms in the following counties in Iowa: Buena Vista, Cherokee, Osceola, Pocahontas, Sioux, and Wright.  The largest outbreak was at a farm in Wright County with 2.8 million birds.  The first case of highly pathogenic H5N2 avian influenza in Nebraska has been confirmed at a commercial egg-laying farm in Dixon County with over 1.7 million hens.  The farm has been quarantined and the remaining birds will be culled.  The Dixon County farm is located in the Central flyway path and is near Sioux County, Iowa, where there have been several reported cases of the virus.  The affected farms have been quarantined and any surviving birds will be culled to prevent the virus from spreading. This outbreak brings the number of states affected by the virus to 16.  H5 avian influenza has been detected in several additional farms and are awaiting confirmation by the USDA National Veterinary Services Laboratory. +
+
+ + USA (HPAI H5N8) +
+
+ The first case of the highly pathogenic H5N8 avian influenza virus in Indiana has been reported at a backyard farm in Whitley County housing 77 chickens, turkeys, ducks and geese. The owner had recently purchased some birds and an increased mortality was noted. Samples were submitted for testing and HPAI H5N8 was detected. The farm has been disinfected and placed under quarantine for 21 days, and neighboring farms are being surveyed to ensure the disease hasn?t spread. +
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_05_22.html b/data/flu-report-html/usgs_avian_flu_report_2015_05_22.html new file mode 100644 index 0000000..5af4b9e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_05_22.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from May 22, 2015 +

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+ + + News Update May 21, 2015 + + +
+
+ + + Avian Influenza in Poultry + +
+ India (HPAI H5N1) +
+
+ According to a World Organisation for Animal Health (OIE) report, two new cases of highly pathogenic H5N1 avian influenza viruses have been reported in India.  The outbreaks occurred at the Indian Council of Agriculture Research (ICAR) in the Lamphelat District of Impahl, Manipur with 21,814 birds and in the village of Thorrur, Telengana with 201,264.  A total of 41,980 birds died, and the remaining 181,098 were culled to prevent the disease from spreading.  In addition to culling, a 10 km surveillance zone has been established surrounding the affected premises. +
+
+ + Myanmar (HPAI H5N1) + +
+ An additional outbreak of the highly pathogenic H5N1 avian influenza dating back to February 12 has been confirmed in Kyauk Sit Pon in Sagaing Division.  The outbreak affected 88 chicken layer farms and 50 quail layer farms.  A total of 134,284 birds died, and the remaining 201,822 were culled to prevent further spread of the virus.  The source of the outbreak is unknown, but it is believed to be caused with a lack of biosecurity within the zone. +
+
+ + Taiwan (HPAI H5N2 & H5N8) + +
+ According to World Organisation for Animal Health (OIE) reports, six additional cases of the highly pathogenic H5N2 avian influenza virus, and two additional cases of the H5N8 strain have been confirmed.   The H5N2 outbreaks occurred at chicken and geese farms in Changhua County, Pingtung County, and Yunlin County.  A total of 64,498 birds died, and 39,438 were culled to prevent the virus from spreading.  The H5N8 outbreaks occurred at a chicken farm Yunlin County and a geese farm in Pingtung County, where a combined 1,609 birds died and the remaining 3,271 birds were culled.  In addition to culling, the affected farms have been placed under movement restriction, and farms within a 3 km radius are under intensified surveillance for 3 months. +
+
+ + Turkey (HPAI H5N1) + +
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been reported at a poultry farm in Moralilar, Manisa.  137 birds died, and the remaining 169,863 were culled to prevent further spread of the disease.  A 3 km radius protection zone and a 7 km radius surveillance zone were also established around the affected farm. +
+
+ + USA (HPAI H5N2) + +
+ According to the United States Department of Agriculture Animal and Plant Health Inspection Service, six additional cases of the highly pathogenic H5N2 avian influenza have been reported.  In Minnesota, the farms affected include turkey farms in Kandiyohi County (42,600 birds) and Meeker County (138,000 birds), and a chicken farm in Renville County (625,500 birds).  In Iowa, outbreaks occurred at a turkey farm in Sac County (28,400 birds) and a backyard flock in Sioux County.  In South Dakota, an outbreak was reported at a chicken farm in Moody County (1.2 million birds).  All affected premises have been quarantined, and the surviving birds culled to prevent the virus from spreading. +
+
+ + Vietnam (HPAI H5N1) + +
+ Two additional cases of the highly pathogenic H5N1 avian influenza virus have been reported.  The first occurred in a village in the Tam Binh District, Vinh Long Province, where 200 birds died and the remaining 100 were culled.  The second was reported in a backyard flock of sixty 3-month-old ducks in Nhon Son Commune, Ninh Son District of the Ninh Thuan Province.  Three of the ducks tested positive for the virus and the rest were culled to prevent further spread of the disease.  This is the first case of avian influenza creported in the Ninh Thuan district this year. +
+
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_05_29.html b/data/flu-report-html/usgs_avian_flu_report_2015_05_29.html new file mode 100644 index 0000000..900a51a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_05_29.html @@ -0,0 +1,2114 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from May 29, 2015 +

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+
+
+

+ + Avian Influenza in Animals +
+
+ + Kazakstan (HPAI H5) + +
+ According to a World Organisation for Animal Health (OIE) report, two Dalmation pelicans found dead in the Alzhayik State Nature Reserve in the Gur'yev Province have tested positive for highly pathogenic H5 avian influenza virus.  To prevent further spread of the disease, wildlife reservoirs are being controlled and screening is underway. +
+
+ + Avian Influenza in Poultry + +
+ + Ghana (HPAI H5N1) + +
+ The highly pathogenic H5N1 avian influenza virus has been confirmed at two poultry farms, including one in the capital, Accra.  According to a health ministry official, at least 20,000 chickens on five farms around Accra and the port town of Tema have been destroyed, though the report is not clear if the disease has been confirmed in all of the locations.  A national technical committee has been created to stem the outbreak and trace its source. +
+
+ + India (HPAI H5N1) + +
+ The High Security Animal Diseases Laboratory in Bhopal, after sequencing the genome of the highly pathogenic H5N1 avian influenza virus discovered in the Thorrur village of the Rangareddy District of Telangana last month, has discovered it is a match to a virus that caused an outbreak in Chhattisgarh two years ago.  It was not a match to the strain which caused outbreaks in Kerala, Karnataka, and Chandigarh last year, however.  These findings raise questions if the virus made its way to Hyderabad from the neighboring Chhattisgarh or if it has been around for a while and may have infected birds in other states. +
+
+ + Ivory Coast (HPAI H5N1) + +
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been reported in Quartier Koko, Bouake, in the Bouake Department.  The outbreak occurred in a backyard flock of 138 birds, of which 93 died.  The source of the outbreak is believed to be introduction of new animals to the flock and contact with wild birds.  To prevent the disease from spreading, the premises have been quarantined and disinfected, and screening and movement control have been put in place. +
+
+ + USA (HPAI H5N2) + +
+ The World Organization for Animal Health (OIE)'s Director General Bernard Vallat said that the avian influenza epidemic is likely to be under control within a few months as the United States has increased measures to contain the disease and the summer heat weakens it.  The virus has led to the death or culling of more than 40 million birds from commercial farms and backyard flocks in 16 states.  The epidemic was particularly severe in the U.S. because farmers were not prepared, and because of the large size of the nation's farms. +
+
+ Three additional cases of the highly pathogenic H5N2 avian influenza have been confirmed in two commercial farms (one with 240,000 chickens) and one backyard flock in Sioux County, Iowa.  The state also reported two probable cases at farms in Adair County (975,000 birds) and Webster County (160,000 birds), bringing the total number of outbreaks in the state to 66.  Initial testing showed positive for H5 avian influenza, and additional testing is underway.  All affected premises have been quarantined and the surviving birds culled to prevent further spread of the virus. +
+
+ In Minnesota, six additional cases of the virus have been confirmed at three turkey farms in Kandiyohi County, two in Renville County, and one in Brown County.  A total of 94 cases have now been reported in the state, resulting in the death of over 8 million birds. +
+
+ The United States Department of Agriculture will be trapping small mammals and birds in Iowa and testing them for avian influenza.  Although there have been no confirmed cases of the virus in mammals, it is believed rodents may transmit the virus to chicken or turkeys by carrying infected material on its fur or paws. +
+
+ + Vietnam (HPAI H5N1) + +
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been reported at a farm in the south-central Dak Lak Province with 1,500 birds.  The surviving birds will be culled to prevent the virus from spreading. +
+
+ + Avian Influenza in Humans + +
+ + China (LPAI H7N9) + +
+ According to the National Health and Family Planning Commission, six cases of human infection by the low pathogenic H7N9 avian influenza virus have been reported, including two from Anhui Province, and one each from Hubei and Jiangxi Province.  This brings the total number of human infections in the country to 655. +
+
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_06_05.html b/data/flu-report-html/usgs_avian_flu_report_2015_06_05.html new file mode 100644 index 0000000..64448af --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_06_05.html @@ -0,0 +1,2107 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jun 05, 2015 +

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+
+
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+ Ghana (HPAI H5) +
+
+ According to a World Organisation for Animal Health Report (OIE), 3 new outbreaks of the highly pathogenic H5 avian influenza virus have been reported in the Greater Accra Region.  The affected premises include a commercial farm in Saki, Kpone-Katamanso District with 30,807 layer and broiler chickens, a backyard flock in New Achimota, Ga East District with 360 birds, and a backyard flock in Maccarthy Hill, Ga South District with 100 birds.  A total of 2,780 birds died and the rest were culled to prevent the disease from spreading.  The source of the outbreak is unknown, and additional testing is underway to determine the subtype. +
+
+ + Taiwan (HPAI H5N2) + +
+ Six additional cases of the highly pathogenic H5N2 avian influenza virus have been reported at five commercial chicken farms and an abattoir in Changhua County, Nantou County, and Yunlin County.  A total of 46,845 birds died, and the remaining 65,035 were destroyed to prevent further spread of the virus.  In addition to culling, all affected premises have been thoroughly disinfected and surrounding farms within a 3 km radius have been placed under intensified surveillance. +
+ + +
+
+ Taiwan (HPAI H5N8) +
+
+ An additional case of the highly pathogenic H5N8 virus has been reported at a chicken farm in Dacheng Township, Changhua County.  Of the 12,000 birds at the farm, 6,750 died and 5,430 were culled to prevent spread of the disease.  Farms within a 3 km radius are under intensified surveillance. +
+
+ + Turkey (?) + +
+ Avian influenza, serotype unknown, has been discovered at a farm in the northwestern province of Bursa.  2,500 chickens died and around 100,000 were culled to prevent the virus from spreading.  Investigations are underway to determine the source of the outbreak and the particular strain of the virus. +
+
+ + USA (HPAI H5N2) + +
+ The United States Department of Agriculture Animal and Plant Health Inspection Service has confirmed 12 additional cases of the highly pathogenic H5N2 avian influenza virus.  In Iowa, outbreaks were reported at turkey farms in Sac County and Hamilton County (2 cases: 26,200 and 17,200 birds) and chicken farms in Calhoun County (13,400 birds), Clay County (1,115,700 birds), and Wright County (434,800 birds).  Outbreaks occurred in Minnesota at turkey farms in Blue Earth County (19,400 birds), Brown County (2 cases: 18,300 birds and 15,900 birds), Kandiyohi County (37,000 birds), and Renville County (47,800 birds).  A turkey farm in Moody County, South Dakota (52,000 birds) also reported an outbreak.  To prevent further spread of the disease, all affected premises have been quarantined, and the surviving birds culled. +
+
+
+ Vaccine +
+ The United States Department of Agriculture (USDA), after evaluating the existing vaccines developed for highly pathogenic avian influenza H5N1, has determined that they are not efficient enough to be approved for emergency use, offering only 60% effectiveness in chickens when challenged with the currently circulating H5N2 virus.  The USDA also stated that it wants to ensure that the vaccine industry is prepared to produce enough of the vaccine to create an effective control measure, and that additional outreach with trading partner will be required to avoid market disruptions.  The USDA will continue to support development of vaccines and will reevaluate its decision as more effective vaccines are developed. +
+
+ + Vietnam (HPAI H5N6) + +
+ An additional case of highly pathogenic H5N6 avian influenza virus has been reported in the Nghia Tan village in the Dak Nong province.  4 birds died and the remaining 16 were culled to prevent the virus from spreading. +
+
+ + Avian Influenza in Humans + +
+ + USA + +
+ While recently identified HPAI H5 highly pathogenic avian influenza viruses (H5N2, H5N8, and H5N1) are not known to have caused disease in humans, their appearance in North American birds may increase the likelihood of human infection in the United States.  Other avian influenza viruses have been associated with severe, sometimes fatal, disease, with infections most often occurring through unprotected contact with infected birds or contaminated surfaces.  Although the Centers for Disease Control (CDC) considers the risk to the general public from newly-identified HPAI H5 viruses to be low, they recommend the following precautions: clinicians should consider the possibility of HPAI H5 infection in patient showing symptoms of respiratory illness and who have a history of exposure; state health departments should investigate potential human cases of HPAI H5 virus infection and notify CDC; people should avoid unprotected exposure to sick or dead birds, feces, litter, or contaminated materials; and people exposed to birds infected HPAI H5 should be monitored for signs and symptoms of infection for 10 days.  No human vaccines are currently available for the viruses in the United States. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_06_12.html b/data/flu-report-html/usgs_avian_flu_report_2015_06_12.html new file mode 100644 index 0000000..329296a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_06_12.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 12, 2015 +

+
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+ + + News Update June 12, 2015 + +
+
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+ + Avian Influenza in Animals + +
+ + Russia (HPAI H5N1) + +
+ Two great crested grebes and two common terns found dead near Ubsu-Nur Lake in the Republic of Tyva (Tuva) during active monitoring of the area tested positive for the highly pathogenic H5N1 avian influenza virus.  The virus has not been detected from healthy migratory birds sampled at the same time. +
+
+ + USA (HPAI H5N2) + +
+ Three young Canada geese collected in Sterling Heights, Michigan have been confirmed to be infected with the highly pathogenic H5N2 avian influenza virus.  This is the first time the disease has been discovered in the state, bringing the number of states affected with the disease to 21.  Officials are focusing on measures to prevent the disease from spreading to poultry, such as practicing biosecurity measure including washing boots and tires, gating in poultry farms, and adding air vents to barns in case the virus is airborne. +
+ +
+
+ + + Avian Influenza in Poultry + +
+ Ghana (HPAI H5N1) +
+
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been reported at a farm in Kpone Katamanso, Greater Accra Region with 11- and 12-month-old layers.  246 birds died and the remaining 1,033 were culled to prevent further spread of the virus. +
+
+ + USA (HPAI H5N2) + +
+ 7 additional cases of the highly pathogeni H5N2 avian influenza virus have been confirmed by the United States Deapartment of Agriculture Animal and Health Inspection Service (APHIS).  Outbreaks occurred in Iowa at turkey farms in Hamilton County (19,600 birds) and Sac County (42,200 birds).  In Minnesota, outbreaks were reported at turkeys farms in Brown County (39,000 birds), Kandiyohi County (4,000 birds), and Renville County (4,800 birds) and a chicken farm in Renville County (15,000 birds).  Nebraska reported an outbreak in a backyard flock in Dixon County.  To prevent further spread of the disease, all affected premises have been quarantined, and the surviving birds culled. Premises in four counties in Arizona were placed under quarantine Friday (6/12/15) because they had received chicken, quail or pheasant birds or eggs from a farm in Iowa in the week before H5N2 was detected. The Iowa farm is suspected to have shipped similar samples to other parts of the country. Follow up investigation, including laboratory testing, is being conducted. +
+ + +
+ Avian Influenza in Humans +
+
+ China (LPAI H7N9) +
+
+ The Centre for Health Protection of the Department of Health has reported an additional human case of the lowly pathogenic H7N9 avian influenza virus in a 61-year-old man from Shanghai.  The patient is still under treatment for the virus.  In May, China reported a total of 15 H7N9 cases with 6 deaths.  Since 2013, there have been a total of 641 human cases of the virus reported. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_06_19.html b/data/flu-report-html/usgs_avian_flu_report_2015_06_19.html new file mode 100644 index 0000000..f11a84e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_06_19.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 19, 2015 +

+
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+ + + News Update June 19, 2015 + +
+
+

+ + Avian Influenza in Poultry + +
+ + Germany (LPAI H7N7) + +
+ According to a World Organisation for Animal Health (OIE) report, the low pathogenic H7N7 avian influenza virus has been confirmed at a farm in the Emsland district of Lower Saxony (Niedersachsen) at a farm with 36,100 laying hens.  The source of the outbreak is unknown, and two of the birds have been destroyed. +
+
+ + Ghana (HPAI H5N1) + +
+ Five additional case of the highly pathogenic H5N1 avian influenza virus have been discovered at two farms in Volta and at a farm and two backyard flocks in Greater Accra.  A total of 2,591 birds died, and the remaining 2,078 birds were culled and the premises quarantined to prevent the disease from spreading. +
+
+ + Iran (HPAI H5N1) + +
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been reported in a backyard flock of 25 birds in a village in Amol, Mazandaran Province.  17 of the birds died and the rest were called to prevent further spread of the virus.  In addition to culling, an investigation is underway to trace the source of the outbreak and active surveillance is ongoing. +
+
+ + USA (HPAI H5N2) + +
+ Two additional cases of the highly pathogenic H5N2 avian influenza virus have been reported.  One occurred at a farm in Dixon County, Nebraska that was already culling its 200,000 chickens, the fourth farm in the state to be affected by bird flu.  In addition to culling, all nearby farms have been placed under quarantine to prevent the disease from spreading.  The other case occurred at a farm in Wright County, Iowa with 1 million chickens, where preliminary tests indicate the virus is present.  32 million birds have died or been culled at 76 previously affected farms in Iowa. +
+
+ After studying virus samples from more than 80 turkey and chicken farms, scientists from the USDA?s Animal and Plant Health Inspection Service (APHIS) have released a preliminary epidemiological report indicating that H5N2 avian influenza has likely been spread through insufficient application of biosecurity practices.  These include: sharing of equipment between infected and non-infected farms, employees moving between infected and non-infected farms, lack of cleaning and disinfection of vehicles moving between farms, and rodent or small wild birds inside the poultry houses.  In addition, air samples collected outside affected poultry houses were found to contain virus particles and wind data shows a relationship between high winds and an increase in the number of infected farms, indications that the virus may be transmitted by air.  More than 49 million birds have died or been culled in 15 states this spring due to the disease. +
+
+ + Taiwan (HPAI H5N2) + +
+ According to a World Organisation for Animal Health (OIE) report, three new cases of the highly pathogenic H5N2 avian influenza virus have been reported at farms in Yunlin County.  A total of 8,894 chicken and geese died, and the remaining 14,364 were culled to prevent further spread of the disease.  In addition to culling, the affected farms have been placed under movement restriction and surroundings farm within a 3 km radius are under intensified surveillance. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_06_26.html b/data/flu-report-html/usgs_avian_flu_report_2015_06_26.html new file mode 100644 index 0000000..2b9d320 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_06_26.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 26, 2015 +

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+ News Update June 26, 2015 +

+
+

+ + Avian Influenza in Poultry + +
+ China (HPAI H5N1) +
+ According to a World Organisation for Animal Health Report (OIE) report, two new cases of the highly pathogenic H5N1 avian influenza virus have been reported. One occurred at a farm in Changzhou, Jiangsu Province with 2,349 ornamental birds (species not identified). The other outbreak was at a chicken farm in Qiannan state, Guizhou Province with 12,554 birds. A total of 5,658 birds died and the remaining 9,245 were culled to prevent the disease from spreading. +
+

+

+ Israel (HPAI H5N1) +
+ An additional case of the highly pathogenic H5N1 avian influenza virus has been confirmed at a turkey farm in Acco, Hazafon District in northern Israel. 110 bird died and the remaining 17,090 on the farm were culled to prevent further spread of the virus. In addition to culling, the farm has been quarantined and movement control is in place inside the country. An epidemiological investigation is still underway to determine the source of the outbreak. +

+

+ Nigeria (HPAI H5N1) +
+ According to a World Organisation for Animal Health (OIE) report, 30 new outbreaks of the highly pathogenic H5N1 avian influenza virus have been reported at chicken farms and backyard flocks in the Plateau Region. Only one case affected broilers, with the rest being laying hens. In total, 1,409 birds died and the remaining 60,711 were culled to prevent further spread of the disease. In addition to culling, quarantine, movement controls, and disinfection measures have been implemented. The source of the outbreak is unknown, but OIE has noted poor biosecurity measures at the affected premises. +

+

+ USA (HPAI H5N2) +
+ Fifteen additional cases of the H5N2 avian influenza virus have been reported. Two involved wild animals captured as part of surveillance: a snowy owl in Oconto County, Wisconsin, and a Canada goose in Macomb County, Michigan. Six outbreaks occurred in Minnesota at commercial turkey farms in Brown, Kandiyohi, and Renville Counties, and a chicken farm in Renville County. Outbreaks in Iowa included four commercial turkey farms in Hamilton, Sac, and Sioux Counties, a chicken farm in Clay County, and one backyard game bird flock in Sioux County. Nebraska reported an outbreak in a backyard chicken flock in Dixon County. The infected farms have been quarantined, and a total of 1,810,911 birds were culled to prevent the virus from spreading. +

+

+ + Avian Influenza in Humans + +
+ Egypt (HPAI H5N1) +
+ An additional human case of the highly pathogenic H5N1 virus has been reported. The patient, who died from the disease, was a 40-year-old woman from Sohag governorate. This marks the third human case in the past three months; the other two patients are under hospitalization. Most cases in Egypt have been detected in impoverished rural areas, where villagers often raise poultry on the rooftops of their homes. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_07_08.html b/data/flu-report-html/usgs_avian_flu_report_2015_07_08.html new file mode 100644 index 0000000..73aa63e --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_07_08.html @@ -0,0 +1,2065 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 08, 2015 +

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+ News Update July 8, 2015 +

+
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+ + Avian Influenza in Animals + +
+ Turkey (unspecified AIV) +
+ The avian influenza virus has been discovered in wild birds from two districts of Istanbul during prophylactic measures. The virus was found in wild birds in the Kartal district on the Anatolian side and in Arnavutkoy district on the European side. The source and serotype of the virus is unknown. Hunting of wild birds has been banned, and work is underway to prevent the virus from spreading. Turkey had last reported outbreaks of H5N1 in Mat in nearby Balikesire province in May. +
+

+

+ USA (HPAI H5N2) +
+ Nine additional cases of the highly pathogenic H5, three of them further characterized as H5N2 avian influenza virus have been reported in Canadian geese collected by Michigan DNR in Macomb County, Michigan. They are likely to be additional birds from the same Sterling Heights location as the three goslings that were Michigan’s first HPAI H5N2 cases. +

+

+ + Avian Influenza in Poultry + +
+ Ghana (HPAI H5N1) +
+ According to a World Organisation for Animal Health report, an additional case of the highly pathogenic H5N1 has been discovered at a chicken farm in Obuasi, Ashaniti Province. This is the first time that the virus has spread beyond the Greater Accra region since the current outbreaks began in April. 1,302 birds died and the remaining 635 were culled to prevent further spread of the disease. In addition to culling, the farm has been quarantined and movement control measures put in place. +

+

+ USA (HPAI H5N2) +
+ An additional case of the highly pathogenic H5N2 avian influenza virus has been confirmed in a chicken flock at a farm in Wright County, Iowa. All 1,000,000 birds were destroyed to prevent further spread of the virus, and the premises quarantined. Movement control inside the country has also been put in place. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_07_10.html b/data/flu-report-html/usgs_avian_flu_report_2015_07_10.html new file mode 100644 index 0000000..ff186ee --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_07_10.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 10, 2015 +

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+ News Update July 10, 2015 +

+
+

+ + Avian Influenza in Animals + +
+ USA (HPAI H5) +
+ A black-capped chickadee submitted to a rehabilitation facility in Ramsey County, MN has tested positive for highly pathogenic H5 avian influenza. The neuraminidase subtype could not be determined at this time. Minnesota DNR said they have no additional information on this bird at this time. This is the first detection in Ramsey County. +
+

+

+ + Avian Influenza in Poultry + +
+ Nigeria (HPAI H5N1) +
+ According to a World Organisation for Animal Health (OIE) report, 46 additional cases of the highly pathogenic H5N1 avian influenza virus have been reported in chicken farms and backyard flocks in Plateau State. A total of 14,288 birds died, and the remaining 120,843 were culled to prevent the disease from spreading. In addition to culling, the affected premises have been quarantined and movement control measures have been put in place. +

+

+ Taiwan (HPAI H5N2 and H5N8) +
+ Four new cases of the highly pathogenic H5N2 avian influenza virus have been confirmed at three chicken farms in Changhua County and one goose farm in Yunlin County. 24,796 birds died, and the remaining 40,414 were destroyed to prevent further spread of the virus. An additional case of the highly pathogenic H5N8 avian influenza virus was also reported at a chicken farm in Changhua County, where 9,051 birds died and 7,649 birds were culled. In addition to culling, farms within a 3 km radius of the affected premises are under intensified surveillance. +

+

+ USA +
+ Although there have been no new avian influenza outbreaks in three weeks, top veterinary officials with the U.S. Department of Agriculture say it will take increased surveillance, improved farm security, and more money to avoid a return of the disease in the fall. It is believed that waterfowl carry the virus and dropped it over Midwestern farms during the spring migration north. Hotter, dryer weather kills the virus, but scientists worry it could returned with the cooler weather in fall and southward migration. In a hearing held by the U.S. Senate Agriculture Committee, the USDA said it has developed a plan to handle cases at up to 500 farms in all 20 states with major poultry flocks. The plan includes increased surveillance of wild birds and working with industry groups to improve biosecurity, including controlling movement of staff between barns, cleaning equipment more thoroughly, and training personnel on how the virus spreads. The government has also approved hiring 460 temporary positions, including 300 veterinarians and animal technicians, to respond more quickly to outbreaks. Work on a vaccine for the virus is still underway. +

+

+ UK (Suspect Avian Influenza) +
+ A suspected case of influenza has been reported at a poultry farm in Goosnargh, Lancashire. Around 170,000 birds have been culled in order to prevent potential spread of the disease. A 10 km movement control zone has also been set up around the affected farm. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_07_20.html b/data/flu-report-html/usgs_avian_flu_report_2015_07_20.html new file mode 100644 index 0000000..447074a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_07_20.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 20, 2015 +

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+
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+ Kazakhstan (HPAI H5N1) +
+
+ A gannet found dead on the Shalyga Island in the Kazakhstan portion of the Caspian Sea has been confirmed to be infected with the highly pathogenic H5N1 avian influenza virus.  It is unknown where the bird came, but officials are not concerned as it appears to be an isolated case. However, over 1200 seabirds, mainly gulls, have died of unknown causes in the last week of June on Shalyga Island and it is unknown if the two events are related. +
+
+ + + Avian Influenza in Poultry + +
+ Ghana (HPAI H5N1) +
+
+ Two additional cases of the highly pathogenic H5N1 avian influenza virus have been reported in the Greater Accra region at a backyard farm in the Accra Metropolitan Assembly with 68 cockerels and at a commercial poultry farm in Dangbe East.  A total of 183 birds died, and the remaining 1,799 birds were culled to prevent the disease from spreading.  The affected premises have also been quarantined and movement control measures put in place. +
+
+ + Nigeria (HPAI H5N1) + +
+ Three additional HPAI H5N1 outbreaks have been reported to the World Organisation for Animal Health (OIE). All three farms are in the Lagos area and all were in layers. A total of 353 out of 4150 susceptible birds have died. None have been culled as a response measure. +
+
+ + South Africa (LPAI H5N2) + +
+ According to a World Organisation for Animal Health (OIE) report, 4 additional cases of the low pathogenic H5N2 avian influenza virus have been reported in commercial ostrich farms in the Eastern Cape and Western Cape provinces.  Of the 4,577 birds at the farms, there were 868 confirmed cases and 10 deaths.  To prevent further spread of the virus, the affected premises have been quarantined and movement control measures applied. The current LPAI H5N2 outbreak dates to the beginning of 2015 and has affected at least 25 ostrich farms thus far. +
+
+ + Taiwan (HPAI H5N2) + +
+ Three additional cases of the highly pathogenic H5N2 avian influenza virus have been reported at a poultry farm in Changhua County, a turkey farm in Yunlin County, and a goose farm in Kaohsiung.  A total of 5.527 birds died, and the remaining 20,113 were culled to prevent the virus from spreading.  In addition to culling, the affected premises have been quarantined and farms within a 3 km radius are under intensified surveillance. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_07_24.html b/data/flu-report-html/usgs_avian_flu_report_2015_07_24.html new file mode 100644 index 0000000..899b278 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_07_24.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jul 24, 2015 +

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+ + + News Update 7/23/2015 + +
+
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+ + Avian Influenza in Animals +
+
+ + China (HPAI H5N1) + +
+ Three additional outbreaks of the highly pathogenic H5N1 avian influenza virus have been reported.  One occurred at Qinghai Lake in Hai Hanan prefecture where 2,361 Pallas?s gulls (also known as the greater black-headed gull) were found dead.  At the Shuangheer wetland, Inner Mongolia, 300 black-necked grebes died.  415 brown-headed gulls and bar-headed geese were found dead at the Galongcuo bird island in Tibet.  The exact clade of the strains and source of the virus is unknown. +
+
+ + + Avian Influenza in Poultry + +
+ Taiwan (HPAI H5N2) +
+
+ Two new cases of the highly pathogenic H5N2 avian influenza virus have been reported at a duck farm in Taixi Township, Yunlin County and at a poultry farm in Changzhi Township, Pingtung County.  1,540 birds died and the remaining 7,536 were culled to prevent further spread of the disease.  The affected premises have also been quarantined and surrounding farms within a 3 km radius have been placed under intensified surveillance. +
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+ Page Last Modified: +May 19, 2016 +
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+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_07_31.html b/data/flu-report-html/usgs_avian_flu_report_2015_07_31.html new file mode 100644 index 0000000..74ff8be --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_07_31.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 31, 2015 +

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+ News Update July 31, 2015 +

+
+

+ + Avian Influenza in Poultry + +

+

+ Germany (HPAI H7N7) +
+ According to a World Organisation for Animal Health (OIE) report, an additional case of highly pathogenic H7N7 avian influenza has been reported at a poultry farm in Emsland, Lower Saxony. 50 chickens died and the remaining 10,054 were culled to prevent the disease from spreading. In addition to culling, all farms within a 3-km radius have been placed under quarantine, and those within 10 km are under observation. Poultry from three non-commercial flocks within a 1-km radius were also preemptively culled. The new farm is located only 1 km from a farm where low pathogenic H7N7 was identified in June. Investigations are underway to determine the source of the virus and whether there is a connection between the two farms. +
+

+

+ Ghana (HPAI H5N1) +
+ Four new outbreaks of the highly pathogenic H5N1 avian influenza virus have been reported at two farms and two backyard flocks in the Greater Accra region. A total of 7,786 ducks and chickens died, and the remaining 1,395 were culled to prevent further spread of the virus. The source of the outbreak is unknown. +

+

+ Korea (HPAI H5N8) +
+ According to a World Organisation for Animal Health (OIE) report, 110 additional cases of highly pathogenic H5N8 avian influenza virus have been reported in the provinces of Chungcheongbuk-do, Chungcheongnam-do, Gyeonggi-do, Gyeongsangnam-do Jeollabuk-do, Jeollanam-do, and Ulsan Metropolitan City. In total, 236 chickens and ducks died and the remaining 3,036,083 birds were culled to prevent the virus from spreading. The source of the outbreak is unknown, and epidemiological investigations are still ongoing. Since the beginning of the currernt outbreak in 9/24/15, a total of 162 outbreaks have been detected. As the last detection (in South Jeolla) was in 6/10/15, the present situation is considered “stable” and the H5N8 outbreak over. +

+

+ Nigeria (HPAI H5N1) +
+ Four additional cases of the highly pathogenic H5N1 avian influenza virus have been confirmed at three commercial poultry farms in the states of Abia, Enugu, and Lagos, and at a backyard flock in Lagos. 3,417 birds died, and the remaining 2,089 were destroyed to prevent further spread of the disease. Some of the birds had been purchased from an infected state, although the exact source of the outbreak is unknown. +

+

+ Taiwan (LPAI H5N2) +
+ According to a World Organisation for Animal Health (OIE) report, three new outbreaks of the low pathogenic H5N2 avian influenza virus have been reported at poultry farms in Chiayi County, Hsinchu County, and Taoyuan County. A total of 25,573 birds died and the remaining 115, 627 were culled to prevent the virus from spreading. In addition to culling, the affected premises have been placed under movement restrictions and farms within a 3-km radius are under intensified surveillance. +

+

+ Taiwan (HPAI H5N2) +
+ Two additional cases of the highly pathogenic H5N2 avian influenza virus have been reported at a duck farm in Yunlin County and a chicken farm in Pingtung County. 7,113 birds died and the remaining 15,522 were destroyed to prevent further spread of the disease. Farms within a 3-km radius of the affected premises have been put under intensified surveillance. +

+

+ Vietnam (HPAI H5N1) +
+ An additional outbreak of the highly pathogenic H5N1 avian influenza virus has been confirmed in a backyard flock in the Long Ho District of Vinh Long. 117 birds died and the remaining 183 were culled to prevent the virus from spreading. The source of the outbreak is unknown. +

+

+ Vietnam (HPAI H5N6) +
+ One additional case of the highly pathogenic H5N6 avian influenza virus has been reported in a backyard flock in the Quynh Luu District of Nghe An. 256 of the birds died, and the remaining 349 were destroyed to prevent the disease from spreading. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_08_07.html b/data/flu-report-html/usgs_avian_flu_report_2015_08_07.html new file mode 100644 index 0000000..597bad3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_08_07.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Aug 07, 2015 +

+
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+ News Update August 7, 2015 +

+
+

+ + Avian Influenza in Poultry + +

+

+ Ghana (HPAI H5N1) +
+ According to a World Organisation for Animal Health (OIE) report, two additional cases of the highly pathogenic H5N1 avian influenza virus have been reported in free-range flocks in the villages of Lolonya in the Greater Accra Region and Dansoman in the Upper East Region. In total, 81 birds died and the remaining 68 were culled to prevent the disease from spreading. +
+

+

+ Indonesia (HPAI H5N1) +
+ Two additional cases of the highly pathogenic H5N1 avian influenza have been confirmed. The first outbreak occurred in the Allakuang Village, Sidrap (also called Sidenreng Rappang Regency), where 175 birds out of 4,000 died from the virus. Quarantine and disinfection measures are in place to protect the 5,000,000 laying hens surviving in Sidrap and the animal husbandry department will soon disperse the avian influenza vaccine. The second outbreak occurred at several farms in the Deli Serdang regency, North Sumatra. The Deli Serdang Agriculture Agency reported that 57,000 quails in the Karang Anyar subdistrict and chickens and ducks in the Pasar VI Kualanamu and Beringin subdistricts have died. To prevent further spread of the virus, the premises have been thoroughly cleaned and disinfected. +

+

+ Ivory Coast (HPAI H5N1) +
+ According to a World Organisation for Animal Health Report, two new cases of the highly pathogenic H5N1 avian influenza virus have been reported in a backyard flock in the village of Amanibo, Bouake Department and at the main poultry market in Abidjan. A total of 880 birds died and the remaining 297 were destroyed to prevent further spread of the disease. The outbreak is believed to have been caused by the introduction of new live animals and contact with wild species. The affected premises have been quarantined and cleansing and disinfection of all markets in Abidjan is on-going. +

+

+ Mexico (H5) +
+ An additional outbreak of the highly pathogenic H5 avian influenza virus has been reported at a poultry farm in Rosario, Sinaloa state. To prevent the virus from spreading, 500,000 birds were culled and the affected premises have been placed under quarantine and surveillance. It is believed the virus was spread through the movement of infected cardboard and crates from the owner’s other facility in Jalisco. +

+

+ Nigeria (HPAI H5N1) +
+ Two additional cases of the highly pathogenic H5N1 avian influenza virus have been reported at poultry farms in Lakowe Ibejua, Lagos and Umuoko Aluu, Rivers. In total, 7,136 birds died and the remaining 2,414 were cullet to prevent further spread of the virus. The source of the outbreak is inconclusive, but is believed to have been caused by poor biosecurity on the farm. +

+

+ Palestinian Territories (HPAI H5N1) +
+ Two additional cases of the highly pathogenic H5N1 avian influenza virus have been reported at two duck farms in the northern and southern Gaza Strip. All of the surviving birds were culled to prevent the disease from spreading. In addition to culling, the affected premises have been quarantined, and movement control and surveillance measures have been put in place. +

+

+ Taiwan (HPAI H5N2) +
+ Five additional cases of the highly pathogenic H5N2 avian influenza virus have been reported at poultry farms in the Changhua County, Taitung County, and Yunlin County. A total of 2868 birds died, and the remaining 5,132 were destroyed to prevent further spread of the virus. In addition to culling, the affected premises have been quarantined and surrounding farms within a 3 km radius are under intensified surveillance. +

+

+ Vietnam (HPAI H5N6) +
+ One new outbreak of the highly pathogenic HPAI avian influenza has been reported in the village of An Binh, in the province of Quang Ngai. A total of 115 birds died and the remaining 1085 birds were culled to stop the spread of the disease. The source of the outbreak is currently unknown. In addition to culling, surveillance is underway outside the containment zone. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_08_18.html b/data/flu-report-html/usgs_avian_flu_report_2015_08_18.html new file mode 100644 index 0000000..cce8893 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_08_18.html @@ -0,0 +1,2109 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Aug 18, 2015 +

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+
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+ + Avian Influenza in Animals + +
+ + Russia (HPAI H5N1) + +
+ According to a World Organisation for Animal Health Report (OIE), a new case of the highly pathogenic H5N1 avian influenza virus has been reported in a dead whooper swan found at Ingren Lake, located in a park in the Chitinsky Raion (district) of the Zabaykalsky Krai.  Control of wildlife reservoirs, movement controls inside the country, and screening measures have been put in place to prevent the virus from spreading.  The source of the outbreak is unknown. The sequence of the hemagglutin gene of the whooper swan virus showed that it was most closely related to other H5N1 isolates from Tuva and Astrakhan this year. +
+
+ + Avian Influenza in Poultry + +
+ + Mexico (LPAI H5N2) + +
+ An additional case of the low pathogenic avian influenza H5N2 virus has been reported at a poultry farm in the El Rosario municipality in the state of Sinaloa in western Mexico.  The farm was placed under quarantine and around 512,000 birds were culled to prevent the disease from spreading.  A testing of 720 swab or serum samples in the 4 commercial and 33 backyard farms in the area did not detect any additional cases. Sinaloa?s borders have also been closed to the import and export of poultry products. +
+
+ + Nigeria (HPAI H5N1) + +
+ According to the National Veterinary Research Institute (NVRI), two additional cases of the highly pathogenic H5N1 avian influenza virus have been confirmed at poultry farms in Abia and Enugu states in the eastern part of the country.  This is the first time the virus has been reported in these states and the first case since May, bringing the total number of affected states to 20.  The source of the disease has been traced to the purchase of birds in Ibadan at the point of lay.  NVRI has suggested the establishment of a surveillance unit and is awaiting response from the federal government. +
+
+ + South Africa (LPAI H5N2) + +
+ Four additional cases of the low pathogenic H5N2 have been confirmed at commercial ostrich farms in the Western Cape Province.  Out of the 3,692 birds at the farms, 1,075 tested positive for the disease.  To prevent further spread of the virus, the affected farms have been quarantined and movement control measures have been put in place.  The source of the outbreak is unknown. +
+
+ + Taiwan (HPAI H5N2) + +
+ According to a World Organisation for Animal Health (OIE), four additional cases of the highly pathogenic H5N2 avian influenza virus have been reported at two farms in Yunlin County and farms in Changhua County and Nantou County.  A total of 10,627 chickens, ducks, and geese died and the remaining 47,261 birds were culled to prevent the disease from spreading.  In addition to culling, the affected premises have been quarantined and all farms within a 3 km radius are under intensified surveillance.  A total of 531 farms have been affected in the current H5N2 outbreak. The source of the virus is unknown. +
+
+ + Taiwan (HPAI H5N8) + +
+ An additional case of the highly pathogenic H5N8 avian influenza virus has been confirmed at a duck farm in Yunlin County.  1,333 birds died and the remaining 10,320 were destroyed to prevent further spread of the virus.  In addition to culling, the far has been placed under movement restrictions, and all farms within a 3 km radius are under intensified surveillance.  The source of the outbreak is unknown.  A total of 296 farms have been affected in the current H5N8 outbreak. +
+
+ + Vietnam (HPAI H5N1) + +
+ According to a World Organisation for Animal Health Report (OIE), an additional case of the highly pathogenic avian influenza HN1 is responsible for killing 852 birds at a backyard flock in Càng Long District of Trà Vinh Province. To prevent further spread of the virus the remaining 184 birds were culled, the location was disinfected and surveillance measures were enacted.  The source of the outbreak is unknown. +
+
+ + UK (HPAI H7N7) + +
+ An outbreak last month at a poultry farm in Goosnargh in early July is now believed to have been caused by contact with wild birds infected with low pathogenic avian influenza which mutated to high pathogenic.  The outbreak led to the death of 34,604 birds and the culling of the remaining 145,261 birds.  A 3km protection zone initially placed around the farm has been lifted, but a 10 km surveillance zone is still in place. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_08_24.html b/data/flu-report-html/usgs_avian_flu_report_2015_08_24.html new file mode 100644 index 0000000..a010599 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_08_24.html @@ -0,0 +1,2080 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Aug 24, 2015 +

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+ News Update August 24, 2015 +

+
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+ + Avian Influenza in Poultry + +

+

+ China (HPAI H5N6) +
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of the highly pathogenic H5N6 avian influenza virus in the city of Qingyuan in the Guangdong Province. A total of 1,350 birds died and the remaining 820 birds were culled to prevent further spread of the virus. In addition to culling, movement control inside the country, screening, disinfection, stamping out and zoning measures were employed. The source of the outbreak is unknown. +
+

+

+ China (HPAI H5N2) +
+ According to a World Organisation for Animal Health Report (OIE), an additional case of the highly pathogenic H5N2 avian influenza virus has been reported on a farm in the city of Yangzhou in the Jiangsu Province. To prevent the virus from spreading further, movement controls inside the country and disinfection measures have been put in place. The source of the outbreak is unknown. +

+

+ Ghana (HPAI H5N1) +
+ According to the World Organisation for Animal Health Report (OIE), three new cases of the highly pathogenic H5NI have been reported in the districts of Ga East, Ningo Prampram and Ga South in the Greater Accra Region. A total of 1,178 birds died and the remaining 1,924 birds were culled to prevent further spread of the disease. In addition to culling, disinfection measures were employed and movement controls inside the country were put in place. The source of the outbreak is unknown. +

+

+ Ivory Coast (presumed HPAI H5N1) +
+ The prefect of Grand-Bassam, Beudjé Djoman Mathias, announced an outbreak of H5N1 on a farm in Modeste that killed 27,000 chickens. The outbreak began on 7/24. To prevent further spread of the disease, infected and unknown number of birds will be culled, chicken products will be destroyed and disinfection measures will be used on the effected farm. The source of the outbreak is unknown. Modeste is located 15 km east of Abidjan. +

+

+
+ Nigeria (HPAI H5N1) +
+ According to the World Organisation for Animal Health Report (OIE), three new cases of highly pathogenic H5NI have been reported in the state of Lagos and a fourth case in the state of Rivers. A total of 668 birds died and the remaining 2,932 birds were culled to prevent further spread of the disease. In addition to culling, disinfection, quarantine and modified stamping out measures were employed along with movement controls inside the country. The source of the outbreak is unknown. Poor farm biosecurity was noted. +

+

+
+ Palestinian Territories (HPAI H5N1) +
+ According to the Director General, Chief Veterinary Officer of the Palestinian Autonomous Territories, six new cases of highly pathogenic H5 avian flu have occurred in the cities of Gaza, Jabalia, Rafah, Khanyounes, Biet Lahia and The Midle in the Gaza Strip. A number of bird species were infected and a total of 9,808 died. To prevent further spread of the virus 42,877 birds were culled and over 600,000 eggs destroyed. In addition to culling and egg destruction the following measures were taken: stamping out, quarantine, movement control inside the country, screening, disinfection, surveillance outside containment and/or protection zone, destruction of animal products, disposal of carcasses and by products, dipping/spraying and surveillance within containment and/or protection zone. The source of the outbreak is unknown. +

+

+ Vietnam (HPAI H5N1) +

+

+ According to the World Organisation for Animal Health Report (OIE), an outbreak of highly pathogenic H5NI has been reported in the My Xuyen District, Soc Trang Province. A total of 102 deaths occurred and 12 birds were culled to prevent further spread of the virus. In addition to culling, disinfection, surveillance outside containment and/or protection zone and modified stamping out were used to control the outbreak. The source of the outbreak is unknown. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_08_28.html b/data/flu-report-html/usgs_avian_flu_report_2015_08_28.html new file mode 100644 index 0000000..9bb153c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_08_28.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Aug 28, 2015 +

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+ + Ivory Coast (HPAI H5N1) + +
+
+ The World Organisation for Animal Health (OIE) has reported an additional case of the highly pathogenic H5N1 avian influenza virus on chicken farm in the town of Modeste in the Aboisso Department.  A total of 20,286 chickens died and the remaining 7,366 birds were culled to prevent further spread of the virus.  In addition to culling, movement control inside the country, screening, disinfection/disinfestaton, dipping/spraying, quarantine, stamping out and zoning measures were implemented. The source of the outbreak is unknown. This is the first time Aboisso has been affected in the current outbreak, but Modeste is only located 15 km east of Abidjan +
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health (OIE) has reported an additional case of the highly pathogenic H5N1 avian influenza virus on chicken farm in the city of Gombe in state of the same name.  A total 350 chickens died out of 1,000.  To prevent further spread of the virus, movement control inside the country, disinfection/disinfestaton, and quarantine measures were implemented. No birds were culled.  The source of the outbreak is unknown. +
+
+
+ + Taiwan (HPAI H5N2) + +
+
+ Two cases of the highly pathogenic H5N2 avian influenza virus on two chicken farms in Dacheng Township in Changhua County were reported to the World Organisation for Animal Health (OIE) this week.  A total 11,952 chickens died and 47,548 birds were culled to prevent further spread of the virus.  In addition to culling, the farms were disinfected, movement restrictions were implemented and poultry farms in a 3km radius were put under increased surveillance.  The source of the outbreak is unknown.  A total of 533 farms have been affected thus far with HPAI H5N2 in Taiwan. +
+
+ + Russia (HPAI H5N1) + +
+
+ The World Organisation for Animal Health (OIE) has reported 3 cases of the highly pathogenic H5N1 avian influenza virus in the districts of Dovolensky, Barabinsky and Zdvinsky in the Novosibirskaya Oblast.  A total of 7 birds died in three taxonomic families, including 3 rooks, a mallard, an unidentified duck and an unidentified crane.  To prevent further spread of the virus, screening and the control of wildlife reservoirs measures were implemented. No birds were culled. The source of the outbreaks was either unknown or due to contact with wild species. +
+
+
+
+
+ + Vietnam (HPAI H5N6) + +
+
+ The World Organisation for Animal Health (OIE) has reported an additional case of the highly pathogenic H5N6 avian influenza in a backyard flock Bao Thang District of the Lao Cai Province.  A total of 200 chickens died and the remaining 500 birds were culled to prevent further spread of the virus.  In addition to culling, disinfection/disinfestation, modified stamping out and surveillance outside containment and/or protection zone were implemented.  The source of the outbreak is unknown. +
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+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_09_04.html b/data/flu-report-html/usgs_avian_flu_report_2015_09_04.html new file mode 100644 index 0000000..ff74c91 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_09_04.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Sep 04, 2015 +

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+ Ivory Coast (HPAI H5N1) +
+
+
+ According to the World Organisation for Animal Health Report (OIE), an additional 6 cases of the highly pathogenic H5NI avian influenza virus have been reported in backyard flocks and poultry farms in the Broukro, Nimbo and Amanibo 2 districts in the Department of Bouake and the Gbagba Nord, Akouedo-Extension and Port-Bouet districts in the Department of Abidijan.  A total of 4,001 chickens, doves and ducks died, and 3,398 birds were culled to prevent further spread of the disease.  In addition to culling, the practices of stamping out, quarantine, movement control, screening, disinfection, dipping, spraying, and zoning measures were put in place.  The source of the outbreak is listed as unknown. Bouake has not had an H5N1 outbreak since 2007. +
+
+ + Taiwan (HPAI H5N8) + +
+
+ The Council of Agriculture has reported an additional case of the highly pathogenic H5N8 avian influenza virus on a poultry farm in Chiayi County.  A total of 200 ducks died, and 6,000 were culled to prevent further spread of the disease.  In addition to culling, poultry farms in a one kilometer radius of the farm were tested and found to be uncontaminated.  Hatchling farms in a neighboring county are also being tested as possible sources of the outbreak.  According to the Focus Taiwan News Channel, as of August 28, 951 out of 983 poultry farms in Taiwan have tested positive for avian influenza. +
+
+
+ + Vietnam (HPAI H5N1) + +
+
+ According to the World Organisation for Animal Health Report (OIE), 2 cases of the highly pathogenic H5NI avian influenza virus have been reported in a backyard flock in the city of Vinh Long in the Tam Binh district and the other in a village located in the Ninh Son district in the Ninh Thuan Province. A total of 1,029 birds died and 1,521 were culled to prevent further spread of the disease. In addition to culling, the practices of stamping out, movement control, disinfection, surveillance, outside containment, and zoning measuring were implemented. The source of the outbreak is listed as unknown. This is the fourth province in four weeks which has reported H5N1 outbreaks in Vietnam. +

+

+
+
+ + Vietnam (HPAI H5N6) + +
+
+ According to the World Organisation for Animal Health Report (OIE), a case of the highly pathogenic H5N6 avian influenza virus has been reported in a backyard flock in Son Tinh district of the Quang Ngai Province. A total of 1,056 birds died and the remaining 7,544 were culled to prevent further spread of the disease. In addition to culling, disinfection, stamping out, and surveillance outside containment and/or protection zone were implemented. The source of the outbreak is unknown. +
+
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_09_18.html b/data/flu-report-html/usgs_avian_flu_report_2015_09_18.html new file mode 100644 index 0000000..3fb2b09 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_09_18.html @@ -0,0 +1,2088 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 18, 2015 +

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+ + + News Update September 18, 2015 + + +
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+
+ Korea (unspecified AIV) +
+
+
+ The Yonhap News Agency has reported that the Ministry of Agriculture, Food and Rural Affairs, has detected avian influenza as the cause of illness in birds on two duck farms in the city of Naju and Gangjin (located 350 and 400 km southwest of the capital Seoul).  The sick birds were detected by government inspectors.  To prevent further spread of the disease, Seoul has raised its alert system, 14,300 ducks on the farms will be culled, the region will be isolated, poultry farms across the country will be decontaminated and monitoring efforts will be increased in the most vulnerable areas.  Since 2003 there have been five avian influenza outbreaks in South Korea.  This is the first avian influenza outbreak since June 10. The source of the outbreak is unknown. +
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health (OIE) has reported 5 additional cases of the highly pathogenic H5N1 avian influenza virus on chicken farms in the state of Rivers.  A total 4,244 chickens died and 5,682 chickens were culled to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control, and disinfection were put in place.  The source of the outbreak is listed as unknown; however, the birds were sourced from an infected state. +
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health (OIE) has reported an additional case of the highly pathogenic H5N1 avian influenza virus in chickens at a live bird market in Abuja Municipal Area Council in the Federal Capitol Territory.  A total 400 chickens died, no birds were reported to have been destroyed.  To prevent further spread of the disease the practices of quarantine, movement control, and disinfection were put in place.  The source of the outbreak is listed as unknown; however, the birds were sourced from the infected state of Kano. +
+
+
+ + Taiwan (H5N2) + +
+
+ The Taipai Times has reported the Bureau of Animal and Plant Health Inspection and Quarantine has reported highly pathogenic H5N2 avian influenza virus on duck farms Yunlin County in the Dounan Township.  H5N2 is also suspected on farms in Tainan and Chiayi County.  To prevent further spread of the virus, 8,900 ducks from the infected farms will be culled and nearby farms will be disinfected and screened.  Operators will be fined for refusing inspection and failing to report irregular bird deaths.  Additionally, the Council of Agriculture announced new rules that go into effect next year that will require infected farms to be enclosed before they can resume operation. +
+
+ Also reported were hundreds of irregular deaths at duck and geese farm in Chiayi.  The results of diagnostic tests are forthcoming. +
+
+
+
+

+
+

+ + Back + +

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+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_09_30.html b/data/flu-report-html/usgs_avian_flu_report_2015_09_30.html new file mode 100644 index 0000000..70cbae4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_09_30.html @@ -0,0 +1,2122 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Sep 30, 2015 +

+
+ + newer + +
+

+
+ + + News Update 9/24/2015 + +
+
+ + Avian Influenza in Animals + +
+
+

+

+ + Taiwan + + + (H6N1) + +
+

+

+ The Taipei Times has reported that dogs are now susceptible to the H6N1 strain of avian influenza. The discovery was made a few years ago by Wang Ching-ho, a professor at the National Taiwan University School of Veterinary Science.  According to the story, the Taiwanese government doesn?t view the strain, or the fact that it has infected dogs, as a threat to humans, noting that it has been circulating in chicken farms for decades.  One journalist, however, has accused the government of putting the nation at risk by downplaying the danger posed by the H6N1 if it were to mutate, something that the influenza virus has begun to do in Taiwan. +
+
+
+ + Avian Influenza in Poultry + +
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported 33 additional cases of the highly pathogenic H5N1 avian influenza virus on poultry farms in 9 states.  Twenty of the cases were in the Katsina and Rivers States, each had 10 reported cases.  The remaining 13 cases were in the states of Sokoto, Bauchi, Nasarawa, Lagos, Edo, Enugu and Oyo.   A total of 26,472 chickens died and 174,173 birds were culled to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control, disinfection, and destruction of animal products and disposal of carcasses, by-products and waste were carried out.  The source of the outbreaks are unknown; however, it was noted that poor farm biosecurity existed on some farms, that chicks in some cases were of unknown sources and that farms with birds of different originations shared water. +
+
+ The Cable, a Nigerian news source, reported that avian influenza was responsible for the loss of 60,000 birds in August in Lagos.  According to the government?s permanent secretary, the disease has been contained and that farmers are being asked to report suspicious bird deaths.  Tests are also being conducted for avian influenza in areas with the disease, birds testing positive are culled. +
+
+ + South Africa (HPAI H5N2) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of the highly pathogenic H5N2 avian influenza virus on commercial ostrich farms in the Western Cape Province.  A total 343 ostriches were infected, no deaths were reported and no birds were culled.  To prevent further spread of the disease, quarantine, screening and movement control are being employed. . +
+
+ + South Korea (H5N8) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of the highly pathogenic H5N8 avian influenza virus on commercial duck farms in the Jeollanam-do Province.  No deaths were reported, but as a precaution against further spread of the disease 14,300 ducks were culled.  In addition to culling, the practices of movement control, disinfection, quarantine, stamping out, zoning and controlling wildlife reservoirs were put into place.  The source of the outbreak is unknown. +
+
+ KBS World Radio has reported that ducks at a market in Jeollanam-do tested positive for H5N8. To prevent further spread of the virus, markets have been fumigated, the sale of ducks and the Korea?s native chicken has been curtailed, and events that include a large concentration of birds have been prohibited.  Districts in the North Chungcheong Province are taking measures to protect their poultry farms from the disease by disinfecting farms, inspecting nets designed to keep out wild birds and increasing quarantine measures. In the last year the Eumseong District has culled over 1.5 million birds.  There are currently 990,000 ducks and 4.6 million chickens on 157 farms in the district. +
+
+
+ + Vietnam (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N1 avian influenza virus in two villages in the Ha Tinh and Vinh Long Provinces.  A total of 1,140 birds died and 1,465 birds were culled to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control and disinfection were employed. The source of the outbreak is listed as unknown +
+
+ + + Avian Influenza in Humans + +
+
+
+ Soft palate identified as a main site of flu transmission +
+
+ The website MedicalXpress has reported that researchers at the National Institutes of Health have discovered that the soft palate is crucial for the emergence and spread of the flu virus.  The soft palate is the tissue that separates the mouth from the nasal cavity.  The discovery may lead to a better understanding of the transmissibility of the flu virus and help predict which strains are likely to cause a pandemic. +
+
+
+

+
+

+ + Back + +

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_10_05.html b/data/flu-report-html/usgs_avian_flu_report_2015_10_05.html new file mode 100644 index 0000000..03beed5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_10_05.html @@ -0,0 +1,2135 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Oct 05, 2015 +

+
+ + newer + +
+
+ + + News Update 10/1/2015 + + +
+
+ + Avian Influenza in Animals + +
+
+ + USA (HPAI) + +
+
+ Today's top story on USGS Science Features is "Much Ado about Avian Flu". The article provides an excellent summary of the current understanding of avian influenza. Read the story at: http://www.usgs.gov/blogs/features/usgs_top_story/much-ado-about-avian-flu/ +
+
+ + Taiwan (H6N1) + +
+
+ A unique strain of H6N1 has circulated in Taiwan since 1972 and the Taipei Times has reported that dogs are susceptible to the H6N1 strain of avian influenza, which was found for the first time in a 20-year-old café worker in 2013. Wang Ching-ho, a professor at the National Taiwan University School of Veterinary Science and colleagues found that some dogs sampled between 2013 to 2014 had been exposed to the virus. 1.1% of household dogs and 3.1% of free-roaming feral dogs had antibodies to the virus. In a paper that was published this year, the researchers went on to demonstrate that viable H6N1 virus was recovered from one of the dogs and was genetically similar to the virus isolated from the café worker, thus demonstrating the virus can infect dogs. +
+
+
+ + Avian Influenza in Poultry + +
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported 39 additional cases of the highly pathogenic H5N1 avian influenza virus on poultry farms in nine states.  Fifteen of the cases occurred in Rivers and ten in Katsina.  The remaining 14 cases were spread among the states of Sokoto, Bauchi, Nasarawa, Lagos, Edo, Enugu, Abia and Oyo.   A total of 29,220 chickens died and 184,725 birds were culled to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control, disinfection, and destruction of animal products and disposal of carcasses, by-products and waste were carried out.  The source of the outbreaks are unknown; however, it was noted that poor farm biosecurity existed on some farms, that chicks in some cases were of unknown sources and that farms with birds of different originations shared water. +
+
+ The Cable, a Nigerian news source, reported that avian influenza was responsible for the loss of 60,000 birds alone in August in Lagos.  According to the government's permanent secretary, the disease has been contained and that farmers are being asked to report suspicious bird deaths.  Tests are also being conducted for avian influenza in areas with the disease, birds testing positive are culled. +
+
+ The Nation online news, has said that since January of 2015, H5N1 outbreaks has occurred in 21 Nigeria's 36 states and the Federal Capital Territory. The outbreaks have been blamed on poor biosecurity, ignorance of the disease by poultry farmers as well as preventive policies and protocols not being implemented by the states.  To prevent further spread of the virus 1,597,191 birds have been culled and farms are being disinfected. +
+
+
+ + South Africa (LPAI H5N2) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of the low pathogenic H5N2 avian influenza virus on commercial ostrich farms in the Western Cape Province.  A total 343 ostriches were infected, no deaths were reported and no birds were culled.  To prevent further spread of the disease, quarantine, screening and movement control are being employed. +
+
+ + South Korea (HPAI H5N8) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of the highly pathogenic H5N8 avian influenza virus on commercial duck farms in the Jeollanam-do Province.  No deaths were reported, but as a precaution against further spread of the disease 14,300 ducks were culled.  In addition to culling, the practices of movement control, disinfection, quarantine, stamping out, zoning and controlling wildlife reservoirs were put into place.  The source of the outbreak is unknown. +
+
+ KBS World Radio has reported that ducks at a market in South Jeolla province tested positive for H5N8. To prevent further spread of the virus, markets have been fumigated, the sale of ducks and Korea's native chicken has been curtailed, and events that include a large concentration of birds have been prohibited.  Districts in the North Chungcheong Province are taking measures to protect their poultry farms from the disease by disinfecting farms, inspecting nets designed to keep out wild birds and increasing quarantine measures. In the last year the Eumseong District has culled over 1.5 million birds.  There are currently 990,000 ducks and 4.6 million chickens on 157 farms in the district. +
+
+
+ + Vietnam (HPAI H5N1 & + + + + HPAI H5N6 + + ) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N1 avian influenza virus in two villages in the Ha Tinh and Vinh Long Provinces.  A total of 1,140 birds died and 1,465 birds were culled to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control and disinfection were employed. The source of the outbreak is listed as unknown. +
+
+ The OIE also reported a single case of H5N6 in a backyard flock in the Lai Chau Province.  A total of 801 birds died and the remaining 204 birds were culled to prevent further spread of the virus. In addition to culling, the facility was disinfected and surveillance is being conducted in the surrounding area. The source of the outbreak is listed as unknown. +
+
+
+ + Avian Influenza in Humans + +
+
+ Soft palate identified as a main site of flu transmission +
+
+ Researchers at the National Institutes of Health have discovered that the soft palate is crucial for the emergence and spread of the flu virus.  The soft palate is the tissue that separates the mouth from the nasal cavity.  The discovery may lead to a better understanding of the transmissibility of the flu virus and help predict which strains are likely to cause a pandemic. +
+
+
+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_10_14.html b/data/flu-report-html/usgs_avian_flu_report_2015_10_14.html new file mode 100644 index 0000000..cba2392 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_10_14.html @@ -0,0 +1,2086 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Oct 14, 2015 +

+
+ + newer + +
+

+ +
+ + News Update 10/7/2015 +
+
+
+ + Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported additional cases of the highly pathogenic H5N1 avian influenza virus on poultry farms. Five outbreaks were in the state of Rivers and one in Jagawa.  The number of outbreaks in Nigeria now totals 89 for 2015.  A total of 1,822 chickens died and 6,916 were culled out of 9,238 birds to prevent further spread of the virus. In addition to culling, the practices of modified stamping out, quarantine, movement control, and disinfection were carried out.  The source of the outbreaks is unknown. +
+
+ + Laos (HPAIH5N6) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported a new case of the highly pathogenic H5N6 avian influenza virus on a poultry farm in the Xayabury Province.  A total of 314 chickens died and 220 were culled out of 534 birds to prevent further spread of the virus. In addition to culling, the practices of stamping out, quarantine, movement control, and disinfection were carried out.  The source of the outbreak is unknown. H5N6 was previously detected in 2014 in the same province. That outbreak was traced to a shipment of 2-3-day-old chicksn from Yunnan, China. +
+
+ + Taiwan (HPAI H5N2) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported 4 additional cases of the highly pathogenic H5N2 avian influenza virus on poultry farms in the Changhua and Yunlin Counties.  In one case, healthy birds were infected on a farm after it had been disinfected following a previous outbreak.  A total of 455 chickens, ducks and geese died and 9,607 were culled out of 10,062 birds to prevent further spread of the virus. In addition to culling, farms in a 3km radius were put under increased surveillance and the practices of zoning, stamping out, screening, quarantine, movement control, and disinfection were carried out.  The source of the outbreaks is unknown. +
+
+ + Vietnam (HPAI H5N6) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of the highly pathogenic H5N6 avian influenza virus in a backyard flock in the Lao Cai Province.  A total of 800 birds died and 1,000 were culled out of 1,800 birds to prevent further spread of the virus. In addition to culling, the practices of stamping out, disinfection and surveillance were carried out.  The source of the outbreak is unknown. Lao Cai is located in northern Vietnam next to Lai Chau where H5N6 was detected last month. +
+
+
+

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_10_16.html b/data/flu-report-html/usgs_avian_flu_report_2015_10_16.html new file mode 100644 index 0000000..9b2c454 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_10_16.html @@ -0,0 +1,2098 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Oct 16, 2015 +

+
+ + newer + +
+

+
+ + + News Update 10/14/2015 + +
+
+ +
+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ + Ghana (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N1 avian influenza virus in the province of Western Region, one case occurred at a poultry farm and the second in a backyard flock.  A total of 1,672 chickens died and 3,459 were culled out of 5,131 birds to prevent further spread of the virus. In addition to culling, the practices of stamping out, quarantine, movement control, and disinfection were carried out.  The source of the outbreaks is unknown. A total of 25 HPAI H5N1 outbreaks have been detected since September 2015. +
+
+ + Laos (HPAI H5N6) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported the first case this year of a highly pathogenic strain of avian influenza virus in the country. The case of H5N6 occurred on a poultry farm in the Xayabury Province.  A total of 314 chickens died and the remaining 220 were culled to prevent further spread of the virus. In addition to culling, the practices of stamping out, screening, quarantine, movement control, and disinfection were carried out.  The source of the outbreaks is unknown. +
+ +
+ Nigeria (HPAI H5N1) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N1 avian influenza virus on poultry farms in the state of Rivers.  A total of 50 chickens died and the remaining 2,450 were culled to prevent further spread of the virus. In addition to culling, animal products were destroyed and carcasses, by-products and waste were disposed of properly, the practices of stamping out, quarantine, movement control, and disinfection were also carried out.  The source of the outbreaks is unknown, though it was noted that the farm had poor biosecurity. +
+
+ + Vietnam (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported three additional cases of highly pathogenic avian influenza in backyard bird flocks.  A case of H5N1 and H5N6 occurred in separate flocks in the Tuyen Quang Province and a case of H5N6 occurred in Thai Binh Province.  A total of 1,700 birds died and the remaining 3,317 were culled to prevent further spread of the virus.  In addition to culling, the practices of stamping out, surveillance, movement control, and disinfection were carried out.  The source of the outbreaks is unknown. +
+
+
+ + + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+
+
+ The National Health and Family Planning Commission (NHFPC) has reported two human cases of highly pathogenic H7N9 avian influenza in the Zhejiang Province.  The two people affected are in serious condition.  Both had contact with poultry, the woman is a farmer and the man is a poultry worker.  To prevent further spread of the disease, the government is engaged in a public health campaign to increase awareness of the disease and measures people can take to protect themselves.  Thermal imaging is also being used at boundary control points to detect increased body temperatures of travelers.  Since 2013, 659 cases of human avian influenza have been reported on the mainland. +
+
+
+

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_10_28.html b/data/flu-report-html/usgs_avian_flu_report_2015_10_28.html new file mode 100644 index 0000000..bf50d90 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_10_28.html @@ -0,0 +1,2106 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Oct 28, 2015 +

+
+ + newer + +
+

+ News Update October 23, 2015 +

+

+ + Avian Influenza in Poultry + +
+

+

+ + Taiwan (HPAI H5N2) + +
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N2 avian influenza virus, one on a farm in Yunlin County and the second at a slaughterhouse in Taoyan County in Taiwan.  In the farm case, 681 turkeys died and the remaining 992 were culled prevent further spread of the virus. In addition to culling, the farm has been disinfected, put under movement restriction, and poultry farms in a 3 km radius are under increased surveillance.  The source of the outbreak is unknown.  In the slaughterhouse case, no birds died; the disease was discovered by post-mortem inspection and testing.  In response, 570 of the 927 geese were culled, the carcasses were destroyed and the facility disinfected.  The farm where the birds are thought to have originated is also being tested. +
+

+

+ On Oct 24, the Bureau of Animal and Plant Health Inspection and Quarantine (BAPHIQ) has reported that 495 chickens have died on a farm in Changhua County from H5N2 infection.  To prevent further spread of the disease the remaining 20,000 chickens will be culled and biosecurity measures will be strengthened.  The source of the outbreak is thought to be a resurgence of an earlier outbreak or infection from migrating birds. +
+

+

+ + Palestinian Territories (HPAI H5) + +
+ The World Organisation for Animal Health Report (OIE) has reported a case of H5 in the Gaza Strip. No additional information was provided in the report. The report noted: ?The relationship between the cases could not be determined due to the situation in Gaza Strip, and no information about the population of infected birds in Gaza Strip is available due to the situation there.? +
+ + +

+

+ + Nigeria (HPAI H5N1) + +
+ The World Organisation for Animal Health Report (OIE) has reported five additional cases of the highly pathogenic H5N1 avian influenza virus on poultry farms in the state of Rivers.  A total of 710 chickens died and the remaining 8,947 were culled to prevent further spread of the virus. In addition to culling, animal products were destroyed and carcasses, by-products and waste were disposed of properly, the practices of stamping out, quarantine, movement control, and disinfection were also carried out.  The source of the outbreaks is unknown, though it was noted that the farms had poor biosecurity. +
+ + +

+

+ + South Korea (HPAI H5N8) + +
+ The Ministry for Agriculture, Food and Rural Affairs has reported the eighth case of avian influenza in the past month with an outbreak of highly pathogenic H5N8 on a poultry farm in Yeongam County.  To prevent further spread of the virus, 27,000 ducks were culled, the farm is under quarantine, and traffic movement is being restricted.  The case is considered a continuation of an outbreak that was last detected in June of this year.  Since the return of H5N8 in mid-September all of the outbreaks have clusted in the souther region of South Korea and more than 81,000 birds have been culled in an effort to contain the outbreak. +
+

+

+ + Vietnam (HPAI H5N6) + +
+ The World Organisation for Animal Health Report (OIE) has reported two cases of highly pathogenic H5N6 avian influenza in backyard flocks in the Nam Dinh Province.  A total of 700 birds died and the remaining 3,059 were culled to prevent further spread of the virus.  In addition to culling, the practices of stamping out, quarantine, movement control, surveillance, and disinfection were carried out.  The source of the outbreaks is unknown. +
+

+

+ + Avian Influenza in Humans + +
+ + WHO + +
+ The World Health Organization (WHO) is working with partners in Africa to implement procedures to detect and prepare for influenza outbreaks on the continent.  Currently, little is known about the virus in Africa and its human impact.  Chief among WHO efforts is the development of laboratories to diagnose influenza and a surveillance program for the region. +
+
+
+

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_10_30.html b/data/flu-report-html/usgs_avian_flu_report_2015_10_30.html new file mode 100644 index 0000000..e4781b9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_10_30.html @@ -0,0 +1,2095 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Oct 30, 2015 +

+
+ + newer + +
+

+ +
+ + News Update 10/15/2015 +
+
+
+ + Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+
+ + Ghana (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of the highly pathogenic H5N1 avian influenza virus in a village in the Central Region.  A total of 34 chickens, ducks and turkeys died and 476 were culled out of 510 birds to prevent further spread of the virus. In addition to culling, the practices of stamping out, quarantine, movement control, and disinfection were carried out. The source of the outbreak is unknown, but Ghana had previously reported H5N1 outbreaks in the Western region in mid-October. +
+ +
+ South Korea (HPAI H5N2) +
+
+
+ The Ministry for Agriculture, Food and Rural Affairs has reported a case of the highly pathogenic H5N2 avian influenza virus on a poultry farm in Naju, South Jeolla Province.  To prevent further spread of the virus 15, 600 ducks were culled and the farm was put under quarantine. The outbreak is considered the continuation of an outbreak that began in late 2014. The source of the outbreak is unknown. A total of 9 outbreaks of H5N8 has been reported since September of 2015. All of them were in South Jeolla. +
+ +
+ Taiwan (HPAI H5N2) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of the highly pathogenic H5N1 avian influenza virus in turkeys at farm in Yunlin County and in geese at slaughterhouse in Taoyuan County.  A total of 681 birds died and 1,919 were culled out of 2,600 birds to prevent further spread of the virus.  Avian influenza was confirmed by testing birds with abnormal deaths and carcasses that showed signs of the virus.  The farm where the birds originated is being tested as well.  To prevent further spread of the disease the practices of movement control, screening, disinfection, quarantine, stamping out and zoning were implemented. The source of the outbreak is unknown. +
+
+ The Bureau of Animal Health Inspection of Quarantine has reported that 3,500 ducks in Pingtung County have been culled after testing positive for the highly pathogenic H5N2 avian influenza virus.  The birds were tested following detection of the virus on a nearby farm. +
+
+ The Bureau also reported another case of H5N2 in chickens at a slaughterhouse in Taitung County.  The chickens were culled to prevent further spread of the virus, as were the birds at the three farms in Pingtung County where they originated. +
+
+
+ + Vietnam (HPAI H5N6) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of the highly pathogenic H5N6 avian influenza virus in a backyard flock in the Quang Ninh Province.  A total of 120 birds died and 250 were culled out of 370 birds to prevent further spread of the virus.  In addition to culling, the practices of surveillance, stamping out, and disinfection were carried out.  The source of the outbreak is unknown. +
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_11_09.html b/data/flu-report-html/usgs_avian_flu_report_2015_11_09.html new file mode 100644 index 0000000..47abb9a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_11_09.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ +
+ + older + + +

+ Avian Influenza Archive from Nov 09, 2015 +

+
+ + newer + +
+

+
+ + + News Update 11/5/2015 + +
+
+
+ + + Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ Japan (HPAI H5N8) +
+
+
+ Japan?s Agriculture, Forestry and Fisheries Ministry has reported that last winter?s highly pathogenic H5N8 avian influenza outbreak was likely introduced by migratory birds from Siberia rather than from people/goods crossing the border from South Korea as previously thought. The conclusion was based on a comparison of samples from the two countries that showed the 2015 Japanese viruses were less similar to Korean H5N8 viruses isolated in the winter of 2014 but were more related to those in January.  The outbreaks in Japan resulted in the culling of 350,000 chickens on poultry farms in Miyazaki, Yamaguchi, Okayama and Saga prefectures.  Measures to stop the virus at the border, such as disinfecting clothing and shoes of persons with contact with livestock, will continue, but additionally,the two countries will share samples and other relevant information. +
+
+ +
+ South Africa (LPAI H5N2) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported eleven additional cases of the H5N2 avian influenza virus on ostrich farms in the West Cape Province.  In all cases, the virus was found to be a low pathogenic form of H5N2 avian influenza. A total 6,033 birds were infected out of 13,486.  No birds died and no birds were culled.  To prevent further spread of the disease, movement control, screening and quarantine measures were put in place. The source of the outbreak is unknown. +
+
+
+ + South Korea (HPAI H5N8) + +
+
+ The Ministry of Agriculture, Food,  and Rural Affairs has reported a total of 14 cases of the highly pathogenic H5N8 avian influenza virus on poultry farms in the South Jeolla Province.  Since mid-September 196,122 birds have been culled to prevent the spread of the virus.  In addition to culling, facilities will be tested and decontaminated; beginning in December farms with previous outbreaks will be compensated less for future losses and poultry companies will be obligated to train suppliers in disease prevention.  It is believed the virus is being spread by poultry workers moving between farms. +
+ +
+ Taiwan (HPAI H5N2) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported five additional cases of the H5N2 avian influenza virus on poultry farms in Yunlin, Changhua, and Pingtung counties and a slaughterhouse in Tatung County.  The case in Changhua County was discovered because of abnormal mortalities being observed, and the case at the slaughterhouse was discovered by post-mortem inspections and testing.  A total 1,940 birds died and the remaining 34,811 birds were culled to prevent further spread of the disease.  In addition to culling, movement control, screening, disinfection, quarantine, stamping out, and zoning measures were put in place. +
+
+
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+

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_11_13.html b/data/flu-report-html/usgs_avian_flu_report_2015_11_13.html new file mode 100644 index 0000000..9722e1a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_11_13.html @@ -0,0 +1,2094 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ +
+ + older + + +

+ Avian Influenza Archive from Nov 13, 2015 +

+
+ + newer + +
+

+

+

+ + + News Update 11/12/2015 + +
+
+ + Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+
+ + Italy (LPAI H5N2) + +
+
+ The FAO Global Animal Disease Information System has reported a case of low pathogenic LPAI H5N2 avian influenza virus in domestic ducks in the Emilia-Romagna Province of Italy.  A total 3,000 birds were culled prevent further spread of the disease.  The source of the outbreak was not reported. +
+
+ + South Africa (LPAI H7) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported a case of low pathogenic LPAI H7 avian influenza virus on an ostrich farm in the Eastern Cape Province, South Africa with 1,200 birds.  The neuraminidase subtype was not reported.  The birds were tested prior to slaughter.  The outbreak was stated to have begun on 8/25/15, and testing was completed on 9/17/15, Screening and quarantine measures were implemented to prevent further spread of the disease. +
+
+
+ + Taiwan (HPAI H5) + +
+
+ The Bureau of Animal and Plant Health Inspection and Quarantine has reported a highly pathogenic case of H5 (no neuraminidase subtype reported) avian influenza virus in Yunlin County. To prevent further spread of the disease, approximately 7,000 birds were culled and the farm was disinfected.  Five days earlier, on November 4, around 11,000 ducks were culled on another farm in the county due to the virus. +
+ +
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+
+
+ The National Health and Family Planning Commission has reported two people in the Zhejiang Province have contracted highly pathogenic H7N9 avian influenza virus. The women, a 51 year old farmer and 62 year old with poultry exposure are now in serious condition. +
+
+ Since October there have been four human cases of the virus and since 2013 there have been 661, all of the H7N9 subtype.  To prevent further spread of the disease, the government is engaged in an extensive public health campaign to increase awareness of the disease and measures people can take to protect themselves. +
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+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_11_20.html b/data/flu-report-html/usgs_avian_flu_report_2015_11_20.html new file mode 100644 index 0000000..ebb7776 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_11_20.html @@ -0,0 +1,2107 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
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+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Nov 20, 2015 +

+
+ + newer + +
+

+ + + News Update 11/19/2015 + + +
+
+ Avian Influenza in Animals +
+
+ Hong Kong (HPAI H5) +
+
+
+ The Agriculture, Fisheries and Conservation Department (AFCD) in Hong Kong has reported that preliminary tests on an Oriental magpie-robin have come back positive for highly pathogenic H5 avian influenza virus.  Confirmatory tests are being conducted.  The bird, a common species resident to the area, was found dead in a staircase of an apartment building in the New Territories region where there are no poultry farms nearby. To prevent further spread of the disease, a range of precautionary measures are being implemented, including increased inspections of poultry farms and markets, educating bird shop owners and racing pigeon enthusiasts, and stopping the illegal importation of birds. +
+
+
+ + + Avian Influenza in Poultry + +
+ Cambodia (HPAI H5N1) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of highly pathogenic H5N1 avian influenza virus in ducks in backyard flocks in the Battambang and Siem Reap provinces.  The virus was discovered when the flock owners reported sick and dying birds.  A total of 2,280 birds have died out of 8,000.  To prevent further spread of the disease movement control, disinfection and dipping/spraying measures were taken.  The remaining birds were not culled.  The source of the outbreak is unknown. +
+
+ The Phnom Penh Post is reporting the impact the avian influenza outbreaks in Battambang and Siem Reap is having on poultry related businesses.  According to the paper, poultry farmers are concerned for their livelihoods as the government doesn't compensate them for outbreak related losses.  Poultry wholesalers are worried about a decreased availability of birds and a decrease in demand from consumers fearful of catching the disease.  Some restaurants are dependent on popular demand, such as those that specialize in duck dishes, like Muscovy soup. +
+
+
+ + Nigeria (HPAI H5N1) + +
+
+ The World Organisation for Animal Health Report (OIE) has reported four more cases of highly pathogenic H5N1 avian influenza virus in chickens in the states of Kano, Anambra, Rivers and Bayelsa. A total of 3,125 birds died and the remaining 25,511 birds were culled to prevent further spread of the disease.  In addition to culling the following measures were taken: movement control; disinfection; destruction of animal products, carcasses and waste; surveillance and stamping out.  The source of the outbreak is unknown but poor biosecurity was reported by the OIE. +
+ +
+
+
+ + South Korea (HPAI H5N8) + +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported twelve more cases of highly pathogenic H5N8 avian influenza virus in ducks and chickens on farms in the South Jeolla Province.  No bird deaths were reported but 144,809 birds were culled to prevent further spread of the disease.  In addition to culling, movement control, disinfection, quarantine, stamping out, zoning and controlling of wildlife reservoirs were measures taken as well.  The source of the outbreak is unknown. +
+
+ +
+
+ + Vietnam (HPAI H5N6) +
+
+
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of highly pathogenic H5N6 avian influenza virus in a backyard bird flock in the Son La Province in northern Vietnam. A total of 100 birds died and the remaining 226 birds were culled to prevent further spread of the virus. In addition to culling, disinfection, stamping out and surveillance measures were taken.  The source of the outbreak is unknown. +
+
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_11_25.html b/data/flu-report-html/usgs_avian_flu_report_2015_11_25.html new file mode 100644 index 0000000..7817c3f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_11_25.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ + older + + +

+ Avian Influenza Archive from Nov 25, 2015 +

+
+ + newer + +
+

+ News Update November 25, 2015 +

+
+

+ + Avian Influenza in Animals + +
+ Hong Kong (HPAI H5N6) +

+

+ The Agriculture, Fisheries and Conservation Department (AFCD) in Hong Kong has confirmed that a Oriental magpie-robin found dead last week was infected with the  highly pathogenic H5N6 avian influenza virus. The test was a confirmation of preliminary H5-positive test results.  The bird, a common species resident to the area, was found dead in a staircase of an apartment building in the New Territories region where there are no poultry farms nearby. To prevent further spread of the disease, a range of precautionary measures were implemented, including increased inspections of poultry farms and markets, educating bird shop owners and racing pigeon enthusiasts, and stopping the illegal importation of birds. +

+

+ The World Organisation for Animal Health Report (OIE) has reported an additional case of highly pathogenic H5N6 avian influenza virus in an oriental magpie-robin in Hong Kong. The bird was detected via an ongoing wild bird surveillance system, and the source of the outbreak is unknown. Laboratory tests are being conducted by the Tai Lung Veterinary Laboratory and the Centre of Influenza Research at the University of Hong Kong. To monitor any potential spread of the disease, the OIE has implemented an intensive surveillance program for all pet bird shops, poultry markets and poultry farms in Hong Kong. +

+

+ + Avian Influenza in Poultry + +
+ France (HPAI H5N1) +

+

+ The Agriculture Minister of France has reported an outbreak of the highly pathogenic H5N1 virus in backyard flock of 30 chickens.  Twenty-two broilers and layers died and the rest of the flock has been destroyed.  Preliminary sequence analysis suggests that the virus began as a low pathogenic form that has been previously found in Europe. The outbreak is the first reported in France since 2007.  To prevent the virus from spreading, France has activated the national intervention emergency plan, which includes such measures as the creation of a monitoring zone around the outbreak location.  The ministry is reassuring citizens that avian influenza cannot be transmitted through meat, eggs and fois gras or the consumption of any food. +

+

+ + Ghana (HPAI H5N1) + +
+ The World Organisation for Animal Health Report (OIE) has reported two additional cases of highly pathogenic H5N1 avian influenza on a farm and in a village in the Greater Accra Region. A total of 176 birds died from the disease, and the remaining 2,453 were culled to prevent further spread of the disease. In addition to culling the following measures were taken: movement control, disinfection, quarantine and stamping out. The source of the outbreak is unknown. +

+

+ + Nigeria (HPAI H5N1) + +
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of highly pathogenic H5N1 avian influenza virus in a poultry farm in the Rivers State. A total of 310 birds died from the disease, and the remaining 1790 were culled to prevent further spread of the disease. In addition to culling the following measures were taken: movement control; disinfection; quarantine; destruction of animal products, by-products, carcasses, and waste; surveillance and stamping out. The source of the outbreak is unknown but poor biosecurity was reported by the OIE. +

+

+ + Vietnam (HAP H5N6) + +
+ The World Organisation for Animal Health Report (OIE) has reported two more cases of highly pathogenic H5N6 avian influenza virus in backyard bird flocks in the Quang Ngai Province. A total of 824 birds died and the remaining 861 birds were culled to prevent further spread of the disease. In addition to culling, disinfection, surveillance, and stamping out measures were taken as well. The source of the outbreak is unknown +

+

+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ The Guangdong Provincial Health and Family Planning Commission has reported a human case of highly pathogenic H7N9 avian influenza virus in the Guangdong Province in southern China. The patient, a farmer in his 70s, is in the hospital. This infection is under investigation. To prevent further spread of the disease, all live poultry markets within the town are suspended for a week, and people are advised by health specialists to avoid live poultry. Several cases of H7N9 in humans were reported in China last winter, this is the first case to be reported this winter. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_12_04.html b/data/flu-report-html/usgs_avian_flu_report_2015_12_04.html new file mode 100644 index 0000000..c0fcf10 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_12_04.html @@ -0,0 +1,2068 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Dec 04, 2015 +

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+ News Update December 4, 2015 +

+
+

+ + Avian Influenza in Animals + +
+ Canada (LPAI H5N2) +
+ The BC Poultry Association in Canada has reported a case of low pathogenic H5N2 avian influenza virus in a wild duck shot by a hunter. The case in Fraser Valley was detected by a random test by the province of British Columbia. The source of the outbreak is unknown, and although the risk to farm flock is low, experts are urging poultry farms to implement extra biosecurity measures. Precautions suggested include movement control, and making sure that workers change outerwear and footwear when entering and exiting barns. +
+

+

+ + Avian Influenza in Poultry + +
+ France (HPAI H5N1 & H5N2) +
+ The Agriculture Ministry of France has reported that additional cases of highly pathogenic H5N1 avian influenza virus have been detected at two separate poultry farms in the Dordogne region. The source of the outbreak was not reported, and all animals in the two affected farms were culled to prevent spread of the disease. The ministry restated to the public that avian influenza cannot be transmitted to humans by consuming food, including meat, eggs, and foie gras. +

+

+ The World Organisation for Animal Health Report (OIE) has reported a case of highly pathogenic H5N2 avian influenza virus in a goose and duck farm in the Dordogne region. The National Reference Laboratory for Avian Influenza and Newcastle Disease tested one gosling positive for the disease, and the remaining 1,337 birds were culled to prevent further spread of the virus. In addition to culling the following measures were taken: movement control; screening; disinfection; disposal of carcasses, by-products, and waste; surveillance and zoning. The source of the outbreak is unknown. +

+

+ Italy (LPAI H5N2) +
+ The Ministry of Health in Italy has reported a case of low pathogenic H5N2 avian influenza virus in turkeys at a farm in the Forlì-Cesena province. A total of 21,850 animals were destroyed, as required by Italian legislation. In addition to destruction, movement control and disinfection were measures taken. The source of the outbreak was not reported, but a restricted area has been set up around the affected farm. +

+

+ Vietnam (HPAI H5N1 & H5N6) +
+ The World Organisation for Animal Health Report (OIE) has reported an additional case of highly pathogenic H5N1 avian influenza virus in a backyard bird flock in the province of Nghe An. A total of 220 birds died, and the remaining 300 birds were culled to prevent further spread of the disease. The OIE also reported two cases of highly pathogenic H5H6 avian influenza virus in backyard bird flock in the provinces of Nghe An and Lai Chau. A total of 721 birds died, and the remaining 5,133 were culled to prevent further spread of the disease. In each case, disinfection, stamping out, and surveillance were used in addition to culling to control the disease. The sources of these outbreaks are unknown. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_12_16.html b/data/flu-report-html/usgs_avian_flu_report_2015_12_16.html new file mode 100644 index 0000000..286ddf7 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_12_16.html @@ -0,0 +1,2115 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Dec 16, 2015 +

+
+ + newer + +
+

+ + + News Update 12/10/2015 +
+
+
+ + Avian Influenza in Animals + +
+ USA (Eurasian H5) +
+
+ The United States Department of Agriculture's Animal and Plant Health Inspection Service (USDA APHIS) has confirmed a case of H5 avian influenza virus in a wild mallard duck shot by a hunter in Oregon. Because of the low amount of genetic material available in the sample, tests were only able to confirm that it was Eurasian H5, but not the specific strain of the virus, nor whether it was low pathogenic or highly pathogenic. As part of their avian monitoring program, APHIS plans to sample more than 40,000 wild birds by July 1, 2016, 24,000 of which have already been sampled. The United States has been declared free of highly pathogenic avian influenza since November 18, and the USDA urges anyone involved in any form of poultry production to improve their biosecurity measures, and prevent any contact between their animals and wild birds. +
+
+ + + Avian Influenza in Poultry + +
+ France (HPAI H5N1) +
+
+ The World Organisation for Animal Health (OIE) has reported four additional cases of highly pathogenic H5N1 avian influenza virus in birds on commercial poultry farms and backyard flocks in the Dordogne and Haute-Vienne Departments. Of the nineteen birds confirmed to have the disease, twelve died, and another 15,021 birds were culled to prevent further spread of the disease. The National Reference Laboratory for Avian Influenza and Newcastle Disease confirmed the virus after testing samples from all four farms. In addition to culling the following precautions were utilized: movement control; screening; disinfection; traceability; surveillance; stamping out; disposal of all animal carcasses, by-products and waste; zoning; and prohibition of vaccination. Officials also plan to control nearby wildlife reservoirs, as the source of the outbreaks is unknown. +
+
+ + France (LPAI H5N2) + +
+ The World Organisation for Animal Health (OIE) has confirmed two new cases of low pathogenic H5N2 avian influenza virus in ducks on two different farms in the Landes Department. As part of the national surveillance program, the National Reference Laboratory tested samples and confirmed the manifestation of the virus on December fourth. No birds have died or have been culled, but measures have been taken in the form of screening, disinfection, traceability, stamping out, and vaccine prohibition. The source of these outbreaks is unknown. +
+
+ + France (HPAI H5N2) + +
+ The World Organisation for Animal Health (OIE) reports that 5,000 birds susceptible to highly pathogenic H5N2 avian influenza virus have been culled at a farm in the Dordogne Department. The farm was within the restriction zone implemented after a previous outbreak in the region. Further measures to prevent spread of the disease include screening, disinfection, traceability, surveillance, stamping out, prohibition of vaccination, and disposal of carcasses, by-products, and waste. The source of the outbreak is unknown. +
+
+ + France (HPAI H5N9) + +
+ The World Organisation for Animal Health (OIE) has reported three new cases of highly pathogenic H5N9 avian influenza virus in poultry farms in the Dordogne and Landes Departments. A total of 754 birds died from the disease, and an additional 24,376 susceptible birds were culled to prevent its spread. Further measures implemented include movement control, screening, disinfection, traceability, surveillance, zoning, vaccine prohibition, and disposal of carcasses, by-products, and waste. The source of the outbreak is unknown. +
+ +
+ Germany (LPAI H5N2) +
+
+ The World Organisation for Animal Health (OIE) has reported a case of low pathogenic H5N2 avian influenza virus at a poultry farm in the state of Bayern. The Friedrich-Loeffler Institute tested one bird positive for the virus; all 13,100 birds at the farm were culled to prevent further spread of the disease. In addition to culling, further prevention measures include screening, disinfection, stamping out, zoning, and vaccine prohibition. The source of the outbreak is unknown. +
+
+ + Germany (H7N7) + +
+ The animal health body in Germany has reported a case of highly pathogenic H7N7 avian influenza virus at a farm in the south-east portion of the country. More than 13,000 birds were culled after the case was discovered; the source of the outbreak was not reported. +
+
+ + Ghana (HPAI H5N1) + +
+ According to a World Organisation for Animal Health Report (OIE), an additional case of the highly pathogenic H5N1 avian influenza virus has been reported in chickens in backyard flock in the Greater Accra Region.  A total of 17 birds died and the remaining 583 birds were culled to prevent the disease from spreading.  In addition to culling, the premises were quarantined, disinfected, movement control and stamping out measures were also taken.  The source of the outbreaks is unknown. +
+ +
+ Taiwan (HPAI H5N8 and HPAI H5N2) +
+
+ According to a World Organisation for Animal Health Report (OIE), four additional cases of the highly pathogenic H5N2 avian influenza virus has been reported in chickens and ducks on farms in Pingtung and Hualien Counties  and two cases of H5N8 in geese in Chiayi and Tainan Counties.  In the H5N2 cases, 12,779 birds died and the remaining 14,099 birds were culled to prevent the disease from spreading.  In the H5N8 cases, 1,329 birds died and the remaining 1,671 birds were culled.  The outbreaks were discovered when abnormal mortalities were observed. +
+ In addition to culling, the farms have been quarantined and disinfected and poultry farms within a 3km radius are under increased surveillance. Movement control, screening, zoning and stamping out were also utilized.  The source of the outbreaks is unknown. +
+
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2015_12_18.html b/data/flu-report-html/usgs_avian_flu_report_2015_12_18.html new file mode 100644 index 0000000..75e5ecc --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2015_12_18.html @@ -0,0 +1,2092 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ + older + + +

+ Avian Influenza Archive from Dec 18, 2015 +

+
+ + newer + +
+ + + News Update 12/17/2015 +
+
+
+ + Avian Influenza in Poultry + +
+ China (HPAI H5N6) +
+
+ The World Organisation for Animal Health (OIE) reports an additional case of highly pathogenic H5N6 avian influenza virus in a peacock farm in the Hunan province. This diagnosis was confirmed after tests at the Harbin Veterinary Research Institute came back positive. A total of 381 birds died from the disease, and the remaining 5433 were culled to prevent further spread of the disease. In addition to culling, the following measures were taken: movement control; screening; disinfection; stamping out; and zoning. The source of the outbreak is unknown. +
+
+ + France (HPAI H5N1, H5N2, H5N9) + +
+ The World Organisation for Animal Health (OIE) has reported additional cases of highly pathogenic avian influenza viruses in France. The National Reference Laboratory for Avian Influenza and Newcastle Disease confirmed the presence of H5N2 on a duck farm in the Landes department; 25 H5N9 related deaths among ducks on a farm in the Pyrénées-Atlantiques department (the remaining 475 birds were culled to prevent further spread of the disease); and the presence of H5N1 among ducks on a farm in the Dordogne department. In order to control spread of these diseases, the following measures were utilized by all three departments: movement control; screening; disinfection; traceability; surveillance; stamping out; disposal of carcasses, by-products and waste; zoning; and prohibition of vaccination. The Dordogne department also plans to control wildlife reservoirs, and all have implemented protection and surveillance zones. The sources of these outbreaks are unknown. +
+
+ On top of the above cases confirmed by the OIE, the Ministry of Agriculture has report that the number of cases of highly pathogenic avian influenza virus in France have doubled in the last two days to thirty. The new cases have occurred in the same four departments previously affected, all in the southwest region of France. In Landes, nine outbreaks were reported, three among poultry tested prior to slaughter; in Dordogne three outbreaks were reported, one among poultry headed to slaughter; in Pyrénées Atlantiques one outbreak was reported among breeding ducks; and in Gers two outbreaks were reported among ducks and guinea fowls on poultry farms. The strains of these outbreaks are unknown, as are the number of fatalities and the causes of the outbreaks. Due to the relative closeness of these outbreaks to Spain, Spanish producers and authorities are on high alert for any potential spread of the virus. +
+
+ + Nigeria (HPAI H5N1) + +
+ The World Organisation for Animal Health (OIE) reports additional cases of highly pathogenic H5N1 avian influenza viruses in poultry farms in the Edo, Lagos, and Kaduna states. Confirmation took place after tests run by the National Veterinary Research Institute Vom came back positive. A total of 3580 birds died, the remaining 8870 were culled to prevent further spread of the disease. All three states have implemented the following control measures: movement control; quarantine; disposal and destruction of animal products, carcasses, by-products and waste; modified stamping out; and prohibition of vaccination. Lagos and Edo have also utilized surveillance and disinfection to regulate the spread of the virus. The causes of these outbreaks are unknown, although poor biosecurity was noted at the Kaduna farm, and movement control mandates in the Lagos and Edo states have not been properly enforced. +
+
+ + Taiwan (HPAI H5N2, H5N8) + +
+ The Animal Disease Control Center has confirmed that an outbreak of highly pathogenic H5N2 avian influenza virus has taken place among chickens on a poultry farm in Changhua county. After a slaughterhouse reported unusual deaths in a shipment of chickens, the remaining 18,810 chickens from the originating farm were culled and the premise disinfected to prevent further spread of the disease. The cause of this outbreak is unknown, but it is noted that the farm owner will be fined for failing to report suspicious deaths on his farm to authorities. +
+
+ Officials in Pingtung county have reported the presence of highly pathogenic H5N8 avian influenza virus among ducks at a poultry farm. A total of 8,881 ducks were culled, the area was disinfected, and monitoring and sampling zone has been set up around the farm in question. The source of the outbreak is unknown, but officials report that the operator of the farm confined the birds in a closed environment; a violation of the law. The operator will be fined for failing to comply with infectious disease prevention measures. +
+
+ The Bureau of Animal and Plant Health Inspection and Quarantine has confirmed an outbreak of H5 avian influenza virus at a slaughterhouse in Taipei, the exact serotype of the virus is not yet known. A total of 32 chickens were observed to have symptoms of avian influenza, and were culled. The slaughterhouse and surrounding area were disinfected to prevent further spread of the disease. The infected chickens were reported to have come from a farm in Yunlin county, the source of this outbreak is unknown. +
+
+ + Vietnam (HPAI H5N1, H5N6) + +
+ The VN Express news source has reported a case of highly pathogenic H5N1 avian influenza virus on a chicken farm in the Chau Duc District in the province of Ba Ria-Vung Tau. A total of 1,900 chickens have died and 43,000 birds were culled to prevent further spread of the disease. In addition to culling the farm was disinfected. The source of the outbreak is unknown. +
+
+ According to the World Organisation for Animal Health (OIE), an additional case of highly pathogenic H5N6 avian influenza virus has been reported in quails in backyard flock in the Quang Nam Province.  A total of 500 birds died and the remaining 3,500 birds were culled to prevent the disease from spreading.  In addition to culling, the premises were disinfected, a surveillance zone was created, and stamping out measures were taken.  The source of the outbreaks is unknown. +
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_01_08.html b/data/flu-report-html/usgs_avian_flu_report_2016_01_08.html new file mode 100644 index 0000000..1f549ba --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_01_08.html @@ -0,0 +1,2103 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 08, 2016 +

+
+ + newer + +
+

+ + + News Update 1/7/2016 +
+
+
+ + Avian Influenza in Animals + +
+ Hong Kong (HPAI H5N6) +
+
+ The Agriculture, Fisheries and Conservation Department (AFCD) in Hong Kong report a new case of highly pathogenic H5N6 avian influenza virus found in a great egret in Diamond Hill, Wong Tai Sin District. The bird, found dead in a non-public area of a popular park, was confirmed to be infected with H5N6 avian influenza by the Tai Lung Veterinary Laboratory. The immediate area was cleaned and disinfected, and monitoring of wild birds will continue to take place. There are no poultry farms within 3 miles of where the great egret was found, but the AFCD has reminded farmers and pet shop owners to take proper biosecurity precautions. The source of this outbreak is unknown. +
+
+ + + Avian Influenza in Poultry + +
+ France (HPAI H5N1) +
+
+ The World Organisation for Animal Health (OIE) has reported additional cases of highly pathogenic H5N1 avian influenza virus in the Dordogne and Lot Departments. The National Reference Laboratory confirmed the presence of the H5N1 virus from samples taken from 45 hens and guinea fowls which were found dead on farms in Celles, Dordogne and in Miers, Lot. A total of 1450 birds remaining on the farms were deemed susceptible, and all are scheduled to be culled to prevent further spread of the disease. Lot is the 7th Department to be affected by a case of avian influenza. All departments have been in the southwestern region of France. The most recent outbreak, the 67th case of highly pathogenic avian influenza in France, comes from Gabat, in the Pyrénées Atlantiques Department. In addition to culling, the following measures were taken: movement control; screening; disinfection; traceability; zoning; stamping out; disposal of carcasses, by-products, and waste; and control of wildlife reservoirs. The source of these outbreaks is unknown. +
+
+ + Nigeria (HPAI H5N1) + +
+ The World Organisation for Animal Health (OIE) reports an additional case of highly pathogenic H5N1 avian influenza virus on a poultry farm in the state of Enugu. This diagnosis was confirmed after testing at the National Veterinary Research Institute came back positive for the virus. A total of 25,000 16 week old layers died from the disease, and the remaining 95,000 birds were culled to prevent further spread of the disease. Further control measures include movement control, disinfection, quarantine, surveillance, modified stamping out, and official disposal of carcasses, waste, animal products and by-products. The source of this outbreak is unknown, but poor farm biosecurity was observed. +
+
+ + Taiwan (HPAI H5N2) + +
+ The Chiayi County Livestock Disease Control Center and the World Organisation for Animal Health (OIE) have reported multiple cases of highly pathogenic H5N2 avian influenza virus in poultry farms in the counties of Changhua, Chiayi, Pingtung, and Yunlin; and Taipei City. The disease was confirmed after samples from all affected farms were sent to the Animal Health Research Institute. A total of 7,250 birds died, and the remaining 34,944 were culled to prevent further spread of the virus. In addition to culling, the following measures were taken: movement control; screening; disinfection; quarantine, stamping out, and zoning. The source of these outbreaks is unknown. The Chiayi County Center reminded farmers to report any abnormal signs or deaths to the authorities immediately. Failure to report an infectious disease can lead to a fine and lack of compensation for any culled animal under Taiwan?s Statute for Prevention and Control of Infectious Animal Disease. +
+
+ + Taiwan (HPAI H5N8) + +
+ The World Organisation for Animal Health (OIE) reports additional cases of highly pathogenic H5N8 avian influenza virus in poultry in Kaohsiung and the counties of Chiayi and Pingtung. The Animal Health Research Institute confirmed the presence of the virus after testing samples from affected birds. At total of 1,608 geese, chickens, and ducks died from the disease, and the remaining 9,783 were culled to prevent it spreading further. Other control measures include movement control, screening, disinfection, quarantine, stamping out, and zoning. The source of this outbreak is unknown. +
+
+ + + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+
+ Highly pathogenic H5N6 avian influenza virus has infected 3 people in the Guangdong Province within the last 2 weeks. The first case, a 26-year-old female, began displaying symptoms on December 24, was admitted to the hospital on December 27, and died on December 30. Gene analysis by the Shenzhen Municipal Disease Control and Prevention Center indicated that the patient?s infection came from contact with live poultry or a poultry market. The second case, a 40-year-old female, began displaying symptoms on December 22, was admitted to the hospital on December 28, and remains in critical condition. The third case, a 25-year-old man, is currently hospitalized and in serious condition. A total of seven cases of H5N6 in people have been reported in China since 2014. +
+
+ + China (LPAI H7N9) + +
+ The Centre for Health Protection (CHP) reports that on January 6 a 58-year-old woman in Jieyang, Guangdong Province was hospitalized with low pathogenic H7N9 avian influenza virus. The woman, the 667th human case of H7N9 in China since 2013, remains in critical condition. +
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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_01_15.html b/data/flu-report-html/usgs_avian_flu_report_2016_01_15.html new file mode 100644 index 0000000..957abd8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_01_15.html @@ -0,0 +1,2118 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ + older + + +

+ Avian Influenza Archive from Jan 15, 2016 +

+
+ + newer + +
+

+ + + News Update 1/14/2016 +
+
+
+

+

+ + + Avian Influenza in Animals + +
+ Taiwan (HPAI H5) +
+
+ The Council of Agriculture (COA) in Taipei reported Taiwan's first cases of sparrows infected with the new H5 subtype of highly pathogenic avian influenza virus. Two dead sparrows picked up by a resident of Taichung's Situn District tested positive for the H5 subtype on January 8. Poultry farm operators and government agencies should remain alert to the possibility of sparrows transmitting avian influenza viruses among farms. To reduce this risk, authorities initiated disinfection of three farms within a 3 km radius of the area where the dead sparrows were collected. The COA also reported detection of one new H5 highly pathogenic subtype in a pigeon found dead on the roof of a residence in Taipei's Wenshan District on January 11. The source of the outbreak is unknown. +
+
+ + + Avian Influenza in Poultry + +
+ France (HPAI H5N1, H5N2) +
+
+ According to the French Ministry of Agriculture, one case of highly pathogenic avian influenza H5N1 has been reported in poultry in the town of Lafitte-Vigordane, in the Department of Haute-Garonne which is outside of the restriction zone previously established in southwestern France. The farm had 10,000 chickens and 7,000 ducks at the time of detection. A second outbreak was detected in a farm with 1,280 ducks in town of Orin in the Department Pyrenees-Atlantiques. Highly pathogenic avian influenza H5N2 has been detected in the ducks. French officials have instituted sanitary regulations and poultry movement limitations to prevent spread. The source of the outbreaks is unknown. +
+
+ + Nigeria (HPAI H5N1) + +
+ Multiple cases of highly pathogenic H5N1 avian influenza have been reported in Nigeria by the World Organisation for Animal Health (OIE).  The first began on January 2 in Yenagoa, Bayelsa.  A total of 850 birds were found dead and 2,150 were destroyed. +
+
+ Additionally six outbreaks were reported on farms in the states of Kano and Plateau as well as the Federal Capital Territory on January 8.  Diagnostic tests were completed by the National Veterinary Research Institute, Vom (Regional Reference Laboratory) and came back positive for highly pathogenic H5N1 avian influenza.  A total of 21,463 birds were found dead and 179,870 were destroyed. +
+
+ A further nine outbreaks were reported in the states of Nasarawa, Kano, Plateau and the Federal Capital Territory on January 11.  Diagnostic tests were completed by the National Veterinary Research Institute, Vom (Regional Reference Laboratory) and came back positive for highly pathogenic H5N1 avian influenza.  A total of 22,453 birds were found dead and 87,287 were destroyed.  Control measures also included movement control, disinfection, quarantine, stamping out, official destruction of animal products, and official disposal of carcasses, by-productions, and waste.  The source of the outbreaks is unknown. +
+ +
+ UK (LPAI H5N1) +
+
+ According to the Scottish Government, low pathogenic H5N1 avian influenza was identified in chickens on a broiler-breeder farm in Fife, Scotland on January 11.  The infection was detected following tests on several dead birds on the premises.  On January 13, 400,000 birds were culled.  A one kilometer control zone has been placed around the farm restricting the movement of poultry, carcasses, eggs, used poultry litter and manure, and restrictions on bird gatherings.  The source of the outbreak is unknown. +
+ +
+ Vietnam (HPAI H5N6) +
+
+ The World Organisation for Animal Health (OIE) has reported two cases of highly pathogenic H5N6 avian influenza in Vietnam.  The first outbreak began on January 5 in the Quang Ngai province where 454 birds were found dead and 546 were destroyed.  The second outbreak occurred in the Kon Tum province on January 6.  Local authorities tested samples from 550 dead chickens and 440 dead geese and burned the carcasses of all infected birds.  Other control measures include stamping out, disinfection, and surveillance within and outside the containment zone.  The source of the outbreak is unknown. +
+
+ + + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+
+ According to a statement from Hong Kong's Centre for Health Protection (CHP), a 42 year-old man from Guangdong province was hospitalized in Ganzhou in Jiangxi province with highly pathogenic H5N6 avian influenza.  The infection was detected during routine surveillance and the man also had severe pneumonia upon testing.  The man began having symptoms on December 12, was admitted to the hospital on December 19, and died on December 21.  A total of eight cases of H5N6 in people have been reported in China since 2014, four of them being reported in the last few weeks. +
+ +
+ China (LPAI H7N9) +
+
+ The Centre for Health Protection (CHP) reports that eight additional human cases of H7N9 avian influenza have occurred with onset of symptoms between November 24, 2015 and December 24, 2015.  Six of the cases are from Zhejiang province including a 65 year-old male, 53 year-old male, 58 year-old female, and 29 year-old female all in critical condition.  Also in Zhejiang province a 51 year-old female died on December 25, 2015 and a 77 year-old male died on December 11, 2015.  In Jiangsu province, cases of H7N9 avian influenza were reported in a 41 year-old female who remains in serious condition and a 52 year-old female who remains in critical condition.  At the time of this report, 678 cases of H7N9 had been reported in China since 2013. +
+
+ A patient died of H7N9 avian influenza on January 8 in Shaoxing City, Zhejiang Province according to local health authorities.  No additional information about the patient is known. +
+
+ In a statement on January 11, the Centre for Health Protection (CHP) reports there are two new cases of H7N9 avian influenza both thought to have occurred in the Zhejiang province city of Ningbo.  No additional information was provided by Mainland authorities.  According to FluTrackers, 705 cases of H7N9 cases have been reported globally. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_01_22.html b/data/flu-report-html/usgs_avian_flu_report_2016_01_22.html new file mode 100644 index 0000000..8a8466c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_01_22.html @@ -0,0 +1,2125 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 22, 2016 +

+
+ + newer + +
+ + + News Update 1/21/2016 +
+
+
+ + Avian Influenza in Poultry + +
+ China (HPAI H5N6) +
+
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N6 avian influenza virus on a farm rearing black swans and peacocks in the province of Hunan. Of the 165 birds confirmed by the Harbin Veterinary Research Institute to have the disease, 91 died, and an additional 1,132 were culled to prevent further spread of the disease. Further control measures include movement control, screening, disinfection, modified stamping out, and zoning. The source of this outbreak is unknown. +
+
+ + Egypt (HPAI H5N1) + +
+ The Poultry Epidemics and Diseases at the Agriculture Ministry confirmed cases of avian influenza in 16 locations in the Sohag, Qena, Aswan, and North Sinai Governorates. The director of the Ministry, Moussa Suleiman, reports that all birds at these locations, 14 in farms and 2 at markets, have been vaccinated. As a precaution against the disease, a ban on importing birds is currently in place until March. On January 16 in the Sharqia Governorate a 30-month-old child reportedly died of avian influenza. The Ministry further notes that although 1,024 cases of suspected avian influenza in people have been reported in Egypt since November, most of these tested negative. +
+
+ + India (H5N1) + +
+ Officials from the Animal Resource Development Department (ARDD) have reported a case of H5N1 avian influenza virus in chickens and ducks at a government poultry farm at Gandhigram. Samples were taken after suspicious deaths were observed; avian influenza was confirmed by a laboratory in Bhopal. To prevent any spread of the disease, over 8,500 birds were culled and 10,500 eggs destroyed. As a further precaution, officials have plans to cull poultry within a 1 km radius in the near future. The cause of this outbreak is unreported. +
+
+ + Nigeria (HPAI H5N1) + +
+ The World Organisation for Animal Health (OIE) have reported 23 cases of highly pathogenic H5N1 avian influenza virus in farms and backyards in the states of Adamawa, Bauchi, Delta, Ebonyi, Enugu, Kaduna, Kano, Katsina, and Plateau. As many as 6,384 birds have died from the disease, and over 90,000 have been culled to prevent it spreading further. Samples from all cases listed were confirmed to be avian influenza by the National Veterinary Research Institute, Vom. In addition to culling, the following control measures have been implemented: movement control; disinfection; quarantine; stamping out; surveillance; and official disposal of animal carcasses, products, by-products, and waste. The source of theses outbreaks is unknown, but poor farm biosecurity was observed. +
+
+ + Taiwan (HPAI H5N2) + +
+ The Council of Agriculture (COA) and the World Organisation for Animal Health (OIE) have confirmed 8 new cases of highly pathogenic H5N2 avian influenza virus in poultry in the counties of Chianghua, Chiayai, and Yunlin, and the cities of Kaohsiung, Tainan, and Taipei. A total of 11,122 birds died, and 21,615 others were culled to prevent further spread of the disease. A surveillance zone of 3 km has been put into effect around the affected farms for 3 months. Additional control measures include movement control, screening, disinfection, quarantine, and stamping out. The source of these outbreaks is unknown. +
+
+ + USA (HPAI H7N8) + +
+ The Animal and Plant Health Inspection Service (APHIS) and the World Organisation for Animal Health (OIE) report a new case of highly pathogenic H7N8 avian influenza virus in a commercial turkey flock in Dubois County, Indiana. Suspicious mortality events were observed at the farm, and were confirmed by National Veterinary Services Laboratories to be a result of a North American strain of avian influenza. A total of 900 turkeys died of the disease, and the remaining 42,600 were culled to prevent further spread of the virus. In addition to culling, further control measures include movement control, quarantine, heightened surveillance, stamping out, and zoning. Disinfection and disposal of carcasses, by-products and waste will be implemented after necessary testing is finished. APHIS urges anyone involved with poultry to review their biosecurity measures, the cause of this outbreak is unknown. +
+
+ + USA (LPAI H7N8) + +
+ The Animal and Plant Health Inspection Service (APHIS) has confirmed 8 cases of low pathogenic H7N8 avian influenza virus in turkey flocks in Dubois, County, Indiana. After a case of highly pathogenic H7N8 avian influenza virus was detected in the area, 8 nearby flocks were confirmed, and one flock is suspected to have a related but low pathogenic strain of the virus.  Testing on the 9th flock is still ongoing. APHIS is monitoring the area closely, in order to identify any spread or mutation of the low pathogenic virus. +
+
+ + Vietnam (HPAI H5N6) + +
+ The World Organisation for Animal Health (OIE) has reported an additional case of highly pathogenic H5N6 avian influenza virus in a backyard flock in the Lang Son province. A total of 155 birds died, and the remaining 65 were culled to prevent further spread of the disease. Besides culling, the control measures include disinfection, surveillance, and stamping out. The source of this outbreak is unknown. +
+
+ + + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+
+ The Centre for Health Protection (CHP) has reported that another person has been diagnosed with highly pathogenic H5N6 avian influenza virus in Shenzhen. The patient, a 31-year-old woman, began displaying symptoms on January 8, and remains hospitalized in critical condition. This is the 9th human case of H5N6 in China since 2014. +
+
+ + China (LPAI H7N9) + +
+ On January 16 Zhangpu County authorities have confirmed Fujian Province's first human infection of low pathogenic H7N9 avian influenza virus this winter. The patient is in stable condition, and receiving treatment. Livestock sales in 3 surrounding townships have been stopped in order to decrease the public's risk of infection. +
+
+ + Taiwan ex China (H7N9) + +
+ Taiwan's Centers for Disease Control (CDC) reports that on January 19 a Taiwanese man died in China from H7N9 avian influenza virus. The Taiwanese man was exposed to poultry in a market in China's Jiangsu province before falling sick. This is the 23rd confirmed human case of H7N9 avian influenza virus since autumn of 2015 in China. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_01_29.html b/data/flu-report-html/usgs_avian_flu_report_2016_01_29.html new file mode 100644 index 0000000..e7aba7d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_01_29.html @@ -0,0 +1,2080 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jan 29, 2016 +

+
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+

+ + + News Update 1/28/2016 +
+
+
+ Avian Influenza in Animals +
+ +
+
+ Avian Influenza in Poultry +
+
+ Indonesia (HPAI H5N1) +
+ The Ministry of Agriculture said that 12 outbreaks of highly pathogenic H5N1 avian influenza virus were detected in seven provinces in Indonesia in the month of December last year. There were one event in each of the provinces of Banten, South Sulawesi, Central Java and Yogyakarta, the provinces of Benkulu had two, West Java had four and South Sumatra had two outbreaks. In total, as many as 7,003 chickens, ducks, and quails died or were culled. There were 123 cases of avian influenza in Indonesia in 2015, and is consistent with the trend seen over the past 5 years, where cases of avian influenza have dropped significantly each year. +
+
+ Ivory Coast (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N1 avian influenza virus in chickens at a poultry market in Abidjan. After 3 chickens died, the National Laboratory for Agricultural Development confirmed avian influenza as the cause. The remaining 1,997 susceptible birds were not culled. Instead, control measures including movement control, screening, disinfection, spraying, quarantine, and stamping out, were implemented. The cause of the outbreak is unknown, but the animals in transit did have contact with wild birds. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported 17 new cases of highly pathogenic H5N1 avian influenza virus in birds in the states of Kaduna, Kano, and Plateau, and the Federal Capital Territory. Confirmed by the National Veterinary Research Institute, 4,034 birds died of the disease, and the remaining 59,293 were culled to prevent further spread. In addition to culling, the following measures were applied: movement control; disinfection; quarantine; surveillance; stamping out; and official destruction of animal products. Traceability will be implemented at a later time. The cause of the outbreak is unknown, but poor farm biosecurity was reported at all locations. +
+
+ + Avian Influenza in Humans + +
+ China (HPAI H7N9) +
+ Regional Health and Family Planning Commissions in Guangdong, Hunan, and Zhejiang provinces have each reported new cases of highly pathogenic H7N9 avian influenza cases in humans. In Guangdong province, a 74-year-old man from Meizhou was reported to be infected with avian influenza. On January 27, a 33-year-old man from Yongzhou with a previous history of poultry contact was reportedly hospitalized with the disease in Hunan Province. On January 28, a 59-year-old woman from Shaoxing City in Zhejiang province was reported to be hospitalized after buying a hen from Dahutou Village, and slaughtering it herself. The Centre for Health Protection (CHP) urges the public to be alert, and to avoid contact with poultry. From 2013 to the present, there have been 682 cases of H7N9 reported in humans. +
+
+ Egypt (HPAI H5N1) +
+ Ahmed Ganzoury, Director General of the Ambulance Facility in Kafr al-Sheikh has announced that on January 25, a 47-year-old woman died of highly pathogenic H5N1 avian influenza virus. The woman, originally from Metobas, was transferred to a fever hospital in Cairo on January 22, where she died. In 2015, a total of 41 people died in Egypt from avian influenza. The Health Ministry reminds people to take protective measures when dealing with, or handling poultry. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_02_08.html b/data/flu-report-html/usgs_avian_flu_report_2016_02_08.html new file mode 100644 index 0000000..2f1e493 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_02_08.html @@ -0,0 +1,2084 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Feb 08, 2016 +

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+ + + News Update 2/4/2016 +
+
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+ Avian Influenza in Poultry +
+
+
+ Ivory Coast (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports 2 new cases of highly pathogenic H5N1 avian influenza virus in Abidjan. The National Laboratory for Agricultural Development confirmed the presence of the virus on two farms. Of the 2,723 susceptible birds, 1,122 died from the virus and 150 were slaughtered. Control measures implemented include movement control, screening, disinfection, dipping and spraying, quarantine, stamping out, and official destruction of animal carcasses, waste, products, and by-products. The cause of this outbreak is unknown, but it was reported that the birds had contact with wild species in transit. +
+
+ Macao (H7) +
+ The Civic and Municipal Affairs Bureau (IACM) and the Health Bureau (SSM) have reported that chickens in a wholesale market have tested positive for a H7 avian influenza virus. All chickens at the stall were from Guangdong province, and had been sold before the test results were received. In response, sale of live poultry across Macao has been suspended for 3 days, all stalls in the market have been ordered to disinfect, and 15,000 other chickens from Guangdong were culled. Employees of the stall have been placed under a 10-day medical observation at the Conde de Sao Januario Hospital Centre. +
+
+ South Africa (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported 3 new cases of low pathogenic H5N2 avian influenza virus on ostrich farms in Western Cape Province. A total of 575 birds tested positive for the virus, and the remaining 1231 have been classified as susceptible. To prevent further spread of the disease, the following measures have been utilized: movement control; screening; and quarantine. The cause of these outbreaks is unknown. +
+
+ South Africa (LPAI H7N3) +
+ The World Organisation for Animal Health (OIE) reports 2 new cases of low pathogenic H7N3 avian influenza virus on commercial ostrich farms in Western Cape Province. A total of 598 birds tested positive for the virus, the remaining 4,447 birds were screened and quarantined. The cause of these outbreaks is unknown. +
+
+ Taiwan (HPAI H5N2) +
+ The World Orgainisation for Animal Health (OIE) has reported 4 new cases of highly pathogenic H5N2 avian influenza virus on farms in Taoyuan City and Tainan City. A total of 17,287 birds died, the Animal Health Research Institute confirmed the cause as avian influenza. To prevent further spread of the disease, the remaining 17,343 birds were culled. Additional control measures include movement control, screening, disinfection, quarantine, stamping out, and zoning. The cause of these outbreaks is unknown. +
+
+ Taiwan (HPAI H5N8) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N8 avian influenza virus in an abattoir in Kaohsiung. The presence of the virus was confirmed after samples from chickens were sent to the Animal Health Research Institute. The remaining 426 birds were culled to prevent further spread of the disease. Further control measures implemented include movement control, screening, disinfection, quarantine, stamping out, and zoning. The cause of this outbreak is unknown. +
+
+ + Avian Influenza in Humans +
+
+ China (H7N9) +
+ The Centre for Health Protection (CHP) has announced that it is monitoring the health of a 60-year-old man from Yongzhou. On February 4 the patient was diagnosed with H7N9 avian influenza virus. On the same day, a 48-year-old man, also from Yongzhou, died from the same strain of the virus. This patient was admitted to the hospital on February 3, and died the next day of liver and kidney failure. How either of the men contracted the virus is unknown. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_02_16.html b/data/flu-report-html/usgs_avian_flu_report_2016_02_16.html new file mode 100644 index 0000000..1afcde8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_02_16.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Feb 16, 2016 +

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+ + Avian Influenza in Poultry + +
+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N1 avian influenza virus in the Federal Capital Territory, and the states of Adamawa, Ebonyi, Jigawa, Kaduna, Kano, and Plateau.  Samples were sent to the National Veterinary Research Institute, where avian influenza was confirmed.  A total of 4,708 birds died of the virus, and the remaining 41,105 were culled to prevent it spreading further.  Additional control measures include: movement control; disinfection; quarantine; surveillance; stamping out; and official destruction of animal products. The cause of these outbreaks is unknown, but poor farm biosecurity was observed. +
+
+ Taiwan (HPAI H5N2) +
+ The Animal Health Inspection and Protection Office confirmed a case of highly pathogenic H5N2 avian influenza virus at a chicken farm in Tainan.  After suspicious deaths were reported, the farm was quarantined, and samples were taken for laboratory testing.  The remaining 5,847 birds were culled to prevent further spread of the disease.  This is the 15th farm in Taiwan to be infected with avian influenza this year, the cause of this outbreak was not reported. +
+
+ + Avian Influenza in Humans + +
+ China (H7N9) +
+ The Centre for Health Protection (CHP) has announced that 2 additional human cases of H7N9 avian influenza virus have been diagnosed.  The first, a 73-year-old man from Guangdong province began displaying symptoms on February 2, and was confirmed to have poultry contact before this.  The patient was admitted to the hospital on February 5, and he remains in serious condition.  The second patient is a 66-year-old man who was also admitted to a hospital on February 5, and is currently under management. +
+
+ A report published on February 11 in the New England Journal of Medicine confirms that last year there was an occurrence of avian influenza spreading person to person.  During January and February of 2015, a 28-year-old man was hospitalized in Shantou with H7N9 avian influenza virus.  According to the study, 2 doctors who treated him also fell ill with the virus, all 3 patients recovered.  This is the first occurrence of person-to-person transmission of avian influenza in a hospital setting. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_02_22.html b/data/flu-report-html/usgs_avian_flu_report_2016_02_22.html new file mode 100644 index 0000000..771c7a1 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_02_22.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Feb 22, 2016 +

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+ + + News Update 2/18/2016 + +
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+ Avian Influenza in Animals +
+
+ Bangladesh (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N1 avian influenza virus in the state of Rajshahi.  The deaths of 40 house crows that died on February 1 were confirmed on February 15 by the National Reference Laboratory for Avian Influenza to be H5N1.  According to the report to OIE the outbreak originated from the crows eating "city waste". Bangladesh had last reported HPAI H5N1 outbreaks in June, 2014. +
+
+ USA (HPAI H5N2/H5N8) +
+ The United States Department of Agriculture (USDA) and other agencies have tested samples from more than 43,000 wild birds since July, looking for evidence of Eurasian strains of highly pathogenic avian influenza virus and their reassorted descendants.  The last HPAI H5 sample was from a mallard sampled in Utah on July 31, 2015.  Between late 2014 and mid-2015, the Eurasian HPAI H5 strains was present in 15 states.  The less severe North American strains of avian influenza have been present this year, but no evidence of the circulation of the introduced Eurasian strains have been found this fall and winter. +
+
+ + Avian Influenza in Poultry + +
+ France (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N2 avian influenza virus at a poultry farm in the Department of Landes.  Samples were taken from a hatchery in Hinx as a part of previously implemented surveillance, and tested positive by the ANSES National Reference Laboratory for avian influenza and Newcastle disease.  The 2,200 susceptible birds will be culled in order to prevent further spread of the virus.  Further control measures include movement control, screening, disinfection, traceability, surveillance, zoning, stamping out, and official disposal of carcasses, by-products and waste.  The source of this outbreak is unknown. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported 4 new cases of highly pathogenic H5N1 avian influenza virus at poultry farms in the states of Katsina, Plateau, and Zamfara.  A total of 3,795 birds died, and the remaining 32,289 were culled to prevent the disease spreading further.  Besides culling, the following control measures have been applied: movement control; disinfection; quarantine; surveillance; stamping out, and official destruction of animal products. Traceability will also be implemented. The source of these outbreaks is unknown, but poor farm biosecurity was noted. +
+
+ Taiwan (HPAI H5N2) +
+ The Council of Agriculture (COA) has reported the presence of highly pathogenic H5N2 avian influenza virus at a chicken farm in Pingtung County.  The 3,088 chickens present at the farm were culled to prevent further spread of the disease.  In accordance with standard procedures, the Bureau of Animal and Plant Health Inspection and Quarantine also cleaned and disinfected the area.  The source of this outbreak was not reported. +
+
+ Vietnam (HPAI H5N6) +
+ The World Organisation for Animal Health (OIE) has reported an additional case of highly pathogenic H5N6 avian influenza virus in a backyard poultry flock in the province of Nghe An.  A total of 415 birds died, and the remaining 2,615 were culled to prevent further spread of the disease.  Other control measures include vaccination, disinfection, surveillance, and stamping out.  The source of this outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ The Health and Family Planning Commission of Guangdong Province reported 3 additional cases of low pathogenic H7N9 avian influenza virus in humans.  The cases, reported to the Centre for Health Protection (CHP) on February 1, involve a 60-year-old woman from Chaozhou, a 59-year-old man from Jiangmen, and a 76-year-old woman from Zhaoqing.  There has been no report on their current condition, or how they contracted the disease. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_02_29.html b/data/flu-report-html/usgs_avian_flu_report_2016_02_29.html new file mode 100644 index 0000000..829c108 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_02_29.html @@ -0,0 +1,2089 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+

+ + Avian Influenza in Poultry + +
+ France (HPAI H5) +
+ It has been reported that 2 new cases of highly pathogenic H5 avian influenza virus have appeared at duck farms in the Department of Dordogne in France.  A total of 8,000 ducks were scheduled to be culled on February 25 and 26 to prevent further spread of the disease.  This is the 2nd time avian influenza has hit one of the farms; in November 2015 it was thoroughly cleaned and disinfected. The cause of these outbreaks was not reported. +
+
+ + Hong Kong (HPAI H5N6) + +
+ The Agriculture, Fisheries, and Conservation Department (AFCD) has reported 2 cases of highly pathogenic H5N6 avian influenza virus in chickens in Tai O and Tuen Mun.  Highly decomposed chicken carcasses were found in or near the water in both cases; samples taken tested positive for the virus.  There are no poultry farms within 3 km of the locations, and officials are searching the nearby towns for any evidence of illegal backyard poultry flocks. +
+
+ + Taiwan (HPAI H5N2) + +
+ The World Organisation for Animal Health (OIE) reports 4 new cases of highly pathogenic H5N2 avian influenza virus in the counties of Changhua , Pingtung  and Yunlin and in the municipality of Tainan city.  A total of 18,259 birds died from the disease, confirmed by the Animal Health Research Institute, and the remaining 22,866 were culled to prevent it spreading further.  In addition to culling, the following control measures were implemented: movement control; screening; disinfection; quarantine; stamping out; and zoning.  The source of these outbreaks is unknown. +
+
+ + Taiwan (HPAI H5N8) + +
+ An additional H5N8 case has been detected in Pingtung County. Since the outbreaks began in Jan 2015, a total of 304 premises have been affected and 631,402 birds destroyed in an effort to contain the outbreak. +
+
+ + Avian Influenza in Humans +
+ China (LPAI H7N9) +
+
+ The City Health and Family Planning Commission has reported a human case of low pathogenic H7N9 avian influenza virus in Cangnan County, Zhejiang Province.  On February 19, the 69-year-old man was confirmed to have the virus, he is currently being treated at the Sixth People's Hospital.  The source of this infection is not confirmed, but it was noted that the patient visited the local farmer's market on occasion, and slaughtered their own backyard hens. +
+
+ The Centre for Health Protection (CHP) reported a human case of low pathogenic H7N9 avian influenza virus on February 23 in Hong Kong.  The patient, a 60-year-old man who lives in Hong Kong, but works in Jiangsu Province, first began on February 8 to exhibit symptoms of fever, chills, cough, and shortness of breath.  He was not diagnosed with avian influenza until February 23, when he was admitted to Princess Margaret Hospital for treatment.  The patient's son has also been hospitalized for observation after displaying a sore throat, his wife remains asymptomatic.  The source of this infection is unknown, the initial patient reportedly visited a wet market before exhibiting symptoms, but claims to have had no poultry contact. The man's son who had a sore throat along with all other close contacts have all tested negative for the virus. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_03_14.html b/data/flu-report-html/usgs_avian_flu_report_2016_03_14.html new file mode 100644 index 0000000..380e316 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_03_14.html @@ -0,0 +1,2100 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Mar 14, 2016 +

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+ + + News Update 3/14/2016 +
+
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+ Avian Influenza in Poultry +
+
+ China (HPAI H5N6) +
+ The World Organisation for Animal Health (OIE) has reported an additional case of highly pathogenic H5N6 avian influenza virus at a farm in Guizhou Province.  A total of 3,120 birds died of the disease, and the remaining 17,001 were culled to prevent further spread.  The Harbin Veterinary Research Institute confirmed the serotype after testing samples from the infected birds.  Other control measures implemented include: movement control; screening; disinfection; modified stamping out; and zoning.  The cause of this outbreak is unknown. +
+
+ Egypt (HPAI H5N1) +
+ A total of 25 cases of highly pathogenic H5N1 avian influenza occurred in Egypt in the month of January.  The Central Department for Preventive Medicine announced that after implementing preventative measures, they now have control over each of these cases.  Measures used include quarantine, disposal of carcasses, disinfection, surveillance, and immunization.  The causes of these outbreaks were not reported. +
+
+ Mexico (HPAI H7N3) +
+ The World Organisation for Animal Health (OIE) has reported 4 cases of highly pathogenic H7N3 avian influenza virus in the states of Jalisco and Puebla.  Originally categorized as resolved, a re-emergence of the disease was identified on one farm in Jalisco State as part of the national surveillance program.  Previous measures include movement control, screening, disinfection, quarantine, and zoning.  Other control measures that are scheduled to be applied are stamping out and official disposal of carcasses, by-products and waste.  The cause of this outbreak is unknown. +
+
+ Myanmar (H5N6) +
+ The Livestock Breeding and Veterinary Department has reported a case of H5N6 avian influenza virus in markets on the Myanmar-China border.  This testing is a result of routine border investigations to limit the spread of avian influenza. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported new cases of highly pathogenic H5N1 avian influenza virus in the Federal Capital Territory, and the states of Benue, Kaduna, Kano, and Plateau.  Samples from affected birds were sent to the National Veterinary Research Institute Vom for diagnostic analysis.  A total of 6,212 birds died of the virus, and the remaining 174,223 were culled to prevent further spread.  In addition the culling, the following control measures have been applied: movement control; disinfection; quarantine; surveillance; stamping out; and official destruction of animal products.  The cause of these outbreaks is unknown, but poor farm biosecurity was reported. +
+
+ Taiwan (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported 2 new cases of highly pathogenic H5N2 avian influenza virus on farms in Changhua County and Tainan City.  Samples were sent to the Animal Health Research Institute after abnormal mortalities were observed in native chickens and geese on the farms.  A total of 3,024 birds died from the virus, and the remaining 12,919 were culled to prevent it spreading further.  Additional control measures include movement control, screening, disinfection, quarantine, stamping out, and zoning.  Because both farms were closed to the outside, neither was prone to infection by wild birds.  Although the cause of the outbreak is unknown, officials believe the virus was brought in from the outside. +
+
+ Taiwan (HPAI H5N8) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N8 avian influenza virus at a farm in Yunlin County.  Samples were sent to the Animal Health Research Institute after abnormal chicken deaths were observed.  A total of 10,691 chickens died of the virus, and the remaining 9,659 were culled to prevent further spread.  Besides culling, other control measures include: movement control; screening; disinfection; quarantine; stamping out; and zoning.  The cause of this outbreak is unknown. +
+
+ Taiwan (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported new cases of low pathogenic H5N2 avian influenza virus on farms in Changhua, Chiayi, and Pingtung Counties.  Samples were sent to the Animal Health Research Institute for diagnosis after abnormal chicken mortalities were observed on 5 farms.  A total of 38,106 birds died of the virus, and the remaining 211,384 were culled to prevent it spreading further.  Additional control measures include movement control, screening, disinfection, quarantine, stamping out, and zoning.  The cause of this outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ The Centre for Health Protection (CHP) announced another human case of low pathogenic H7N9 avian influenza virus.  The status of the patient, a 37-year-old man who lives in Jieyang, was not reported.  Since 2103, this is the 708th case of H7N9 in humans reported in China. +
+
+ Egypt (HPAI H5N1) +
+ On March 7 the national authorities in Egypt announced a human case of highly pathogenic H5N1 avian influenza virus.  The patient, located in Suhag, began observing symptoms on February 26, and was confirmed on March 3 to have the virus.  No further information was reported about the patient, their status, or how they contracted the disease. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_03_21.html b/data/flu-report-html/usgs_avian_flu_report_2016_03_21.html new file mode 100644 index 0000000..d522041 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_03_21.html @@ -0,0 +1,2097 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Mar 21, 2016 +

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+ + News Update 3/17/2016 +
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+ Avian Influenza in Poultry +
+
+ China (HPAI H5N6) +
+ The World Organisation for Animal Health (OIE) reports a case of highly pathogenic H5N6 avian influenza virus at a farm in Jiangxi Province.  This diagnosis was confirmed after samples were tested by the Harbin Veterinary Research Institute.  A total of 14,705 birds died of the virus, and the remaining 19,528 were culled to prevent further spread.  Additional control measures include: movement control; screening; disinfection; modified stamping out; and zoning.  The source of this outbreak is unknown. +
+
+ France (HPAI H5N9) +
+ The World Organisation for Animal Health (OIE) has reported 2 cases of highly pathogenic H5N9 avian influenza virus at farms in the Landes Department.  Samples were tested by the National Reference Laboratory for Avian Influenza and Newcastle Disease, ANSES,  as part of programmed surveillance.  All 16,920 birds were culled to prevent the virus spreading further.  Measures implemented in addition to culling are movement control, screening, disinfection, traceability, stamping out, surveillance, and official disposal of carcasses, by-products, and waste.  The source of these outbreaks is unknown. A total of 31 outbreaks have been reported in Landes since the HPAI outbreaks began in 2015. This is the 23rd HPAI H5N9 outbreak in France. +
+
+ Indonesia (HPAI H5N1) +
+ The Animal Husbandry Department of East Java Province has reported 2 new cases of highly pathogenic H5N1 avian influenza virus at poultry farms in Banyuwangi and Lamongan.  The virus causes the deaths of over 6,000 birds, which were not reported until a week later.  Control measures implemented include disinfection and official disposal of animal carcasses and by-products.  They government does not compensate farmers for losses caused by the virus but will provide free vaccines.  The cause of this outbreak is unknown. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N1 avian influenza virus in the states of Kaduna, Kano, and Plateau.  This analysis was confirmed after testing by the National Veterinary Research Institute, Vom.  A total of 893 birds died of the virus, and the remaining 12,812 were culled to prevent it spreading further.  Additional control measures to be implemented are: movement control; disinfection; quarantine; surveillance; stamping out; and official destruction of animal products.  The source of this outbreak is unknown, but poor farm biosecurity was noted. +
+
+ South Africa (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported new cases of low pathogenic H5N2 avian influenza virus in Eastern Cape Province and Western Cape Province.  A total of 3,720 birds have contracted the disease, and 175 have died from it.  Some of the outbreaks date back to the beginning of December, 2015. Control measures applied are movement control, screening, and quarantine.  The source of this outbreak is unknown. +
+
+ Taiwan (HPAI H5) +
+ The Animal Disease Control Center reports a case of highly pathogenic H5 avian influenza virus at a chicken farm in Changhua County.  All 16,880 chickens were culled after the National Animal Health Research Institute confirmed that the farm was infected with the virus.  In addition to culling, disinfection and surveillance were also implemented.  The cause of this outbreak was not reported. +
+
+ + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+ The National Health and Family Planning Commission reported a case of highly pathogenic H5N6 avian influenza virus in a human on March 15 to the Centre for Health Protection.  The patient, a 40-year-old woman from Huizhou, Guangdong province, displayed symptoms of fever and cough on February 20, and on February 22 was admitted to the hospital.  The patient remains in critical condition.  Officials note that the patient visited a live poultry market before developing symptoms. +
+
+ China (LPAI H7N9) +
+ The Centre for Health Protection (CHP) announced 2 new human cases of low pathogenic H7N9 avian influenza virus.  The patients are a 39-year-old woman from Zhongshan, and a 56-year-old man from Shantou.  The 56-year-old began displaying symptoms of chills, fever, dizziness, headache and body aches on March 6, and was admitted to the hospital.  This patient has a clear history of poultry exposure from farming and restaurant work.  She died on March 17. +
+
+ The Longyan Municipal Propaganda Department and Hubei Provincial Health and Family Planning Commission have also reported human cases of low pathogenic H7N9 avian influenza virus is Longyan City and Hubei Province.  The patient in Longyan City began displaying symptoms on March 16, and is currently in the hospital.  The patient in Hubei Province is currently being treated in the hospital for severe pneumonia, severe sepsis, and multiple organ failure.  The Hubei Province patient has a history of being engaged in poultry business activities. +
+
+ Egypt (HPAI H5N1) +
+ The Food and Agriculture Organization and national authorities have confirmed 2 human cases of highly pathogenic H5N1 avian influenza virus in Cairo and Giza.  The patient in Cairo began displaying symptoms on March 4, and the patient in Giza began on February 24.  No further information is available pertaining to their conditions, or how they contracted the disease. +
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_04_11.html b/data/flu-report-html/usgs_avian_flu_report_2016_04_11.html new file mode 100644 index 0000000..72eb761 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_04_11.html @@ -0,0 +1,2074 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Apr 11, 2016 +

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+ Avian Influenza in Animals +
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+ Avian Influenza in Poultry +
+
+ France (LPAI H5N3) +
+ The World Organization for Animal Health (OIE) issued a follow-up report on the avian influenza outbreak at farms in the Landes Department because the National Reference Laboratory detected H5N3 in scheduled samples taken from a farm with 700 breeding geese. All 700 birds were destroyed. The source of this outbreak is unknown. Measures implemented in addition to destroying the birds are screening, disinfection/disinfestation, traceability, stamping out. +
+
+ Indonesia (HPAI H5N1) +
+ The Animal Husbandry Agency reports that the avian flu virus (presumably HPAI H5N1) has killed 7,000 ducks and 4,000 chickens in the Sidenreng Rappang Regency in South Sulawesi. The Sidenreng Rappang Husbandry Agency was ordered to isolate the affected area. The cause of this outbreak is unknown. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organization for Animal Health (OIE) reports a reoccurrence of H5N1 outbreaks in Nigeria. National Veterinary Research Institute confirmed three outbreaks of the virus and 278 birds have died in the state of Plateau. A total of 18,340 birds were destroyed.  In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. The source of the outbreak is unknown, but the report cites poor farm biosecurity. +
+
+ Taiwan (HPAI H5N2) +
+ The Livestock Disease Control Center of Chiayi County reports that a farm located in Taibao owned approximately 1,700 susceptible geese, among which 200 were suspected of H5N2 infection. All 1,700 birds were culled. Measures implemented to stop the spread of the infection include the incineration of the 1,700 geese, greater sanitization, and fines for failure to report an infection. The cause of the outbreak is unknown. +
+
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+ Page Last Modified: +May 19, 2016 +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_04_20.html b/data/flu-report-html/usgs_avian_flu_report_2016_04_20.html new file mode 100644 index 0000000..579f5a3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_04_20.html @@ -0,0 +1,2077 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Apr 20, 2016 +

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+ Avian Influenza in Poultry +
+
+ Mexico (HPAI H7N3) +
+ The World Health Organisation for Animal Health (OIE) reports additional cases of highly pathogenic H7N3 avian influenza virus associated with an on-going outbreak in multiple commercial and backyard chicken and Indian peafowl (Phasianidae:Pavo cristatus) flocks in Jalisco, Puebla and Veracruz, Mexico. Presence of infection and viral type were confirmed by the Servicio Nacional de Sanidad, Inocuidad y Calidad Agroalmentaria (SENASICA), by intravenous pathogenicity index and virus isolation. Infected farms were first reported during early March. To date, 14,361 chickens and 25 Indian peafowl have died from infection and 145,201 birds have been destroyed. Affected farms have been depopulated and disinfected, and biosecurity measures limiting poultry movements have been instituted. Epidemiologic investigation of this outbreak is on-going. The source of this outbreak is currently unknown. +
+
+ Taiwan (HPAI H5N2) +
+ The World Health Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N2 avian influenza virus in 3 breeding geese farms in Yunlin and Chiayi counties. Samples were submitted to the Animal Health Research Institute after abnormal mortality was observed on the affected farms. All geese on these 3 farms were culled and the facilities were disinfected. A total of 1,148 birds died from infection and 4,787 birds were destroyed. Poultry farms within a 3 km radius of the infected farms will be under intensified surveillance for three months after depopulation and disinfection was completed on affected farms. The source of this outbreak is unknown. +
+
+ Taiwan (HPAI H5N8) +
+ The World Health Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N8 and H5N2 avian influenza viruses in Kaohsiung City. Samples were submitted to the Animal Health Research Institute after observation of suspicious signs in poultry carcasses (species not specified in this report) during postmortem inspection at an abattoir in Kaosiung City. The carcasses were destroyed and the abattoir was thoroughly cleaned and disinfected. The farm of origin was found empty when the inspectors visited and was placed under disinfection and movement restrictions per standard procedures. A total of 677 carcasses were destroyed. The source of this outbreak is unknown. +
+
+ Vietnam (HPAI H5N1) +
+ The World Health Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N1 avian influenza virus in Nghe An Provence. Cases were reported by the Ministry of Agriculture and Rural Development. A total of 94 backyard birds died from infection and 506 were destroyed. Additional control measures implemented included surveillance within a containment or protection zone and stamping out procedures. The source of this outbreak is unknown. +
+ +
+ Avian Influenza in Humans +
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+ Page Last Modified: +May 19, 2016 +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_04_26.html b/data/flu-report-html/usgs_avian_flu_report_2016_04_26.html new file mode 100644 index 0000000..9bc3f90 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_04_26.html @@ -0,0 +1,2140 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Apr 26, 2016 +

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+ gs-mwa-nwhc_LibStudents@usgs.gov +
+ + 160421 Weekly Summary + +
+
+ + + News Update + +
+
+
+ + Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+
+ Egypt (HPAI H5N1) +
+
+ The Central Department for Preventive Medicine of the General Authority for Veterinary Services, Ministry of Agriculture issued a report on April 18 that said a total of 73 HPAI H5N1 outbreaks have been detected in 16 governorates in Egypt this year. 46 farms, 21 markets and 6 backyard flocks have been affected thus far. They followed a program to dispose of dead birds by burning or burial, cleaning affected areas, and conducting immunization procedures for the center of the infection and villages within a 9 km radius of the infected sites.  The cause of the outbreaks is unknown. +
+
+ France (HPAI H5N9) +
+
+ The World Organisation for Animal Health (OIE) issued an updated report following the detection of HPAI H5N9 on April 13 after 350 guinea fowls died over five days on a farm in the municipality of Labastide-Gabausse in the state of Tarn. On April 18, the National Reference Laboratory identified the strain as the highly pathogenic H5N9. The farm site also housed 2,800 free-range chickens which did not present clinical signs. All of the animals were destroyed to prevent spread of the disease. Other control measures include movement control inside the country, screening, disinfection/disinfestation, stamping out, and surveillance. The cause for this outbreak is unknown. This is the first time Tarn has been affected in the HPAI outbreak which began on November 2015 +
+
+ The OIE also notes that the farm housed a batch of 1,000 ducks that left the site for slaughtering on April 6 before the guinea fowl outbreak. According to the National Health Security Agency for Food, Environment and Labour (ANSES), the identified strains are of European origin and not pathogenic for humans. Given the non-transferable nature of the virus to humans, there is no reason for consumers to change their eating habits. +
+
+ Ghana (HPAI) +
+
+ The Veterinary Services Department began investigating a suspected bird flu outbreak at a poultry farm at New Takoradi, a suburb of Tarkwa, in the Western Region of Ghana after 50 birds died. On April 18, it was reported that veterinary and environmental officials destroyed an additional 250 birds. In addition they also destroyed eight crates of eggs, four bags of poultry feed, and empty egg crates in order to stop the spread of the disease. The cause of this outbreak is unknown. +
+
+
+
+ Indonesia (HPAI H5N1) +
+ The Department of Agriculture and Fisheries (Distankan) Depok began an investigation into the deaths of at least seven chickens and three ducks from a farm in Kukusan village. They performed rapid tests on the chicken carcasses and confirmed the presence of the H5N1 strain of avian influenza. The cause of this outbreak is unknown. +
+
+
+ Lebanon (H5N1) +
+ The Agriculture Minister of Lebanon has reported the presence of H5N1 avian influenza virus at a poultry farm in Nabishit.  All the birds at the farm will be culled to prevent further spread of the disease.  In addition to culling, an isolation zone has been set up around the farm.  The cause of this outbreak was not reported. This is the first time that HPAI H5N1 has been detected in Lebanon. +
+
+
+ Myanmar (HPAI H5, H9N2) +
+ The World Organisation for Animal Health (OIE) and the Sagaing Region Livestock Federation report a new case of highly pathogenic H5 and H9N2 avian influenza virus on poultry farms in Monywa.  About 35,000 chickens have been culled on 47 farms since April 3, when the birds began dying.  The diagnosis was confirmed by testing at the Monywa Diagnostic Laboratory, Mandalay Diagnostic Laboratory, and the Yangon Diagnostic Laboratory.  In addition to culling, control measures include movement control, disinfection, quarantine, surveillance, modified stamping out, and zoning.  The source of this outbreak is unknown, but poor farm biosecurity was noted in the area. +
+
+ Taiwan (HPAI H5N2) +
+ The World Orgainsation for Animal Health (OIE) reports 2 new cases of highly pathogenic H5N2 avian influenza virus on poultry farms in Chiayi County.  A total of 558 breeding geese died of the disease, confirmed by testing at the Animal Health Research Institute, and the remaining 2,997 were culled to prevent further spread of the disease.  Additional control measures include: movement control; screening, disinfection; quarantine; stamping out; and zoning.  The source of this outbreak is unknown. +
+
+
+ Taiwan (HPAI H5N8) +
+ The World Organisation for Animal Health (OIE) has reported a new case of highly pathogenic H5N8 avian influenza virus in an abattoir in Kaohsiung City.  Signs of the virus were found in 2 native chickens during postmortem inspection, and confirmed by the Animal Health Research Institute.  The remaining carcasses were destroyed, and the abattoir cleaned and disinfected to prevent any further spread of the disease.  The original farm has undergone additional control measures, including movement control, screening, disinfection, quarantine, stamping out, and zoning.  The source of this outbreak is unknown. +
+
+
+ + Avian Influenza in Humans +
+
+
+ China (HPAI H5N6) +
+
+ The Center for Health Protection (CHP) of the Department of Health (DH) was notified of an additional human case of avian influenza A (H5N6) in Hubei by the National Health and Family Planning Commission on April 21. The patient, a 35-year-old man from the Shennongjia Forestry District, displayed symptoms of fever on April 9 and was admitted to a hospital on April 12. The patient is in critical condition.  Officials note the patient was in contact with live poultry before developing symptoms. +
+
+ China (LPAI H7N9) +
+
+ The Jiangxi Provincial Health and Family Planning Commission confirmed two cases of H7N9 avian influenza virus in the Jiangxi Province on April 17.  The patients are a 43-year-old woman and her 23-year-old son who are hospitalized in Nanchang.  The woman's condition is unknown. The man's condition is stable. +
+
+ The Ministry of Health and Family Planning Commission reported one new case of H7N9 on April 19 in Ma'anshan City.  The patient is a 62-year-old man who is currently in critical condition. The patient had exposure to a live poultry market before the onset of illness.  Since 2016 the province reported a total of six cases of H7N9 influenza with 4 deaths. +
+
+
+ Hong Kong (LPAI H7N9) +
+
+ The Center for Health Protection (CHP) of the Department of Health (DH) started investigating a case of the H7N9 avian influenza infection on April 19 in Hong Kong. The patient, an 80-year-old man, had travelled to Dongguan, Gunagdong, China between April 1-5 and displayed symptoms of a cough with sputum, headache, and gouty attack upon return to Hong Kong on April 6. On April 14, he displayed symptoms of a fever. On April 17 he displayed confusion, refused to eat, and was sent by ambulance to the Accident and Emergency Department of United Christian Hospital where he was admitted into the isolation ward. The patient's sputum tested positive for H7N9 upon laboratory testing, and he was transferred to the Hospital Authority of Infectious Disease Center in Princess Margaret Hospital.  His condition is stable. Officials note that on April 3 the patient bought and slaughtered a live chicken from a wet market while he was in China. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_05_03.html b/data/flu-report-html/usgs_avian_flu_report_2016_05_03.html new file mode 100644 index 0000000..70d58e4 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_05_03.html @@ -0,0 +1,2075 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from May 03, 2016 +

+
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+ +

+ 160428 Weekly Summary +
+
+ News Update +
+

+
+ Avian Influenza in Poultry +
+
+ Lebanon (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported a case of highly pathogenic H5N1 avian influenza virus at a farm in Al Biqa' province.  The National Reference Laboratory identified the disease after abnormal deaths were reported among birds at the farm.  The 20,000 birds on the farm and another 60,000 were culled to prevent the disease spreading further.  Additional control measures include: disinfection; traceability; dipping/spraying; quarantine; stamping out; surveillance; zoning; and official destruction of animal products, carcasses, by-products, and waste.  The source of this outbreak has been traced to the illegal movement of animals. This is the first time that HPAI H5N1 has been detected in Lebanon. +
+
+ Iraq (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N1 avian influenza virus in the governorates of Al Qadisiyah, As Sulaymaniyah, Baghdad, Dahuk, and Diyala.  The virus was identified after samples were tested by the Baghdad Central Veterinary Laboratory, Duhuk Laboratory, Erbil Central Veterinary Laboratory, and the Weybridge Laboratory.  A total of 77,101 birds died of the virus, and the remaining 718,599 were culled to prevent further spread.  In addition to culling, further control measures include movement control, screening, disinfection, traceability, quarantine, surveillance, stamping out, zoning, control of wildlife reservoirs, and official destruction of animal products, carcasses, by-products, and waste.  Highly pathogenic avian influenza H5N1 was last detected in Iraq in January 2006, and the source of the outbreak is unknown. +
+
+ Vietnam (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported an additional case of highly pathogenic H5N1 avian influenza virus in a backyard in Can Tho province in the Mekong Delta region of the country.  A total of 140 birds died of the disease, and the remaining 255 were culled to prevent the virus spreading further.  Additional control measures include stamping out, vaccination, disinfection, and surveillance.  The source of this outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (H5N6) +
+ The Hunan Province Disease Prevention and Control Center reports China's first pediatric case of H5N6 avian influenza virus.  The patient, an 11-year-old female from Zhuzhou City, first began displaying pneumonia-like symptoms on April 11, and on April 13 was admitted to the 13th Hunan Provincial Children's Hospital of Infectious Diseases.  Testing done on April 20 determined that avian influenza was the cause of the child's symptoms.  The child's condition has gradually improved, and she remains in isolation. +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_05_06.html b/data/flu-report-html/usgs_avian_flu_report_2016_05_06.html new file mode 100644 index 0000000..a035ded --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_05_06.html @@ -0,0 +1,2120 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from May 06, 2016 +

+
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+ gs-mwa-nwhc_LibStudents@usgs.gov +
+ + 160505 Weekly Summary +
+
+ News Update +
+
+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ Italy (HPAI H7N7) +
+ The World Organisation for Animal Health (OIE) has reported a case of highly pathogenic H7N7 avian influenza virus at a commercial free-range layer farm in the Emilia-Romagna Region.  Testing of samples was performed at the Experimental Zooprophylactic Institute.  At total of 600 hens died of the disease, and the remaining 16,400 were culled to prevent it spreading further.  In addition to culling, control measures include: disinfection; traceability; stamping out; surveillance; zoning; and official disposal of carcasses, by-products and waste.  The cause of this outbreak is unknown. +
+
+ South Africa (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports 2 cases of low pathogenic H5N2 avian influenza virus on commercial ostrich farms in Western Cape Province from outbreaks that began in February and March.  A total of 847 out of ostriches have been infected, with no fatalities.  Applied measures to control the disease include movement control, screening, and quarantine.  The cause of this outbreak is unknown. +
+
+ Taiwan (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported a case of highly pathogenic H5N2 avian influenza virus on a farm in Tainan City.  Samples were tested at the Animal Health Research Institute.  A total of 3,583 chickens died of the disease, and the remaining 4,887 were culled to prevent it spreading further.  Additional control measures implemented are movement control, screening, disinfection, quarantine, stamping out, and zoning.  The cause of this outbreak is unknown. +
+
+ Taiwan (HPAI H5N8) +
+ The World Organisation for Animal Health (OIE) reports 2 cases of highly pathogenic H5N8 avian influenza virus at a farm in Tainan City, and an abattoir in Kaohsiung City.  Testing of samples were performed by the Animal Health Research Institute.  A total of 109 birds died of the disease, the remaining 1,080 carcasses at the abattoir were destroyed and the remaining 1,832 birds at the farm were culled.  In addition to culling, further control measures applied are movement control, screening, disinfection, quarantine, stamping out, and zoning.  The cause of these outbreaks is uknown. +
+
+
+ USA (LPAI H5N1) +
+ A commercial flock of 39,000 turkeys was destroyed in Jasper County, Missouri after some of the birds tested positive for low pathogenic H5N1 avian influenza on April 30. The farm was quarantined by state officials. The virus is of North American wild bird lineage, but the cause for the outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (HPAI H5N6) +
+ The Centre for Health Protection (CHP) of the Department of Health (DH) reports an additional +
+ human case of avian influenza A (H5N6) in Anhui. The patient is a 65 year old woman with a +
+ history of poultry contact developed symptoms on April 24 and was admitted to a local hospital +
+ on April 27; she is now in critical condition. From 2014 to the present, a total of 13 human cases +
+ of influenza A (H5N6) have been reported by the Mainland health authorities. +
+
+
+ China (LPAI H7N9) +
+ The National Health and Family Planning Commission (NPHFPC) of China reports of an +
+ additional 17 cases of laboratory confirmed cases of human infection with avian influenza +
+ (H7N9) from six provinces and municipalities: Anhui (4), Jiangsu (4), Fujian (3), Guangdong +
+ (3), Zhejiang (2), and Hubei (1).  Of the 17 cases, 11 were male patients. A likely cluster of human to human transmission was reported in an 85-year-old woman, from the Zhejiang province showed an onset of symptoms on March 1 and died on March 8. She shared the ward with another confirmed case between February 22 and 23, this patient was a 29 year old man from Zhejiang province who developed symptoms on February 15 from exposure to live poultry at a market or a household contact with a confirmed case from the Fujian province who developed symptoms on February 4 from contact with a live poultry market. Of the 17 cases, there were 5 deaths. +
+
+
+ Subsequent to the NPHFPC report, a 58 year old male patient was admitted to the Laizhou City People's Hospital and is in critical condition and confirmed infected with H7N9. He was admitted to the hospital after displaying symptoms of a cough, body aches, and high fever. The source of the infection has not been detected, but may stem from handling the family's chicken flock while not wearing protective measures. +
+
+
+ Egypt (LPAI H9 (N2?) +
+ National authorities in Egypt report a confirmed case of Avian Influenza H9 LPAI in the +
+ Minshat Nasir area. On April 20, 2016 a patient tested positive for the avian influenza. No other details were given about the patient. +
+
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_05_20.html b/data/flu-report-html/usgs_avian_flu_report_2016_05_20.html new file mode 100644 index 0000000..db7db5d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_05_20.html @@ -0,0 +1,2101 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 20, 2016 +

+
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+ + 160512 (5/12/2016) Weekly Summary +
+
+ News Update +
+
+ Avian Influenza in Poultry +
+
+ Egypt (HPAI H5N1) +
+ The Food and Agriculture Organization of the United Nations (FAO) reports 2 cases of highly pathogenic H5N1 avian influenza virus in the Governorates of Al Sharqia and Beni Suef.  A total of 32 birds were culled after becoming infected with the disease.  The source of this outbreak was not reported. +
+
+ Ghana (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported 4 cases of highly pathogenic H5N1 avian influenza virus at farms in the Centra and Eastern provinces, and the Greater Accra Regions.  A total of 1,278 birds died from the disease, and the remaining 7,722 were culled to prevent it spreading further.  Additional control measures include: movement control; disinfection; quarantine; and stamping out.  The source of this outbreak is unknown. +
+
+ Indonesia (HPAI H5N1) +
+ Data from the Agriculture Ministry show 148 cases of avian influenza in Indonesia in the first 4 months of the year.  This is a significant increase, considering in 2015 only 123 cases were reported.  The Director of Animal Health Services at the Agriculture Ministry cites a lack of public awareness as the main reason for the spread of highly pathogenic H5N1 avian influenza virus.  This, coupled with lowered poultry immunity due to the El Nino effect, make the threat of a more widespread avian influenza epidemic more imminent. +
+
+ Italy (HPAI H7N7) +
+ The World Organisation for Animal Health (OIE) reports a case of highly pathogenic H7N7 avian influenza virus on a turkey farm in the region of Emilia-Romagna.  The Experimental Zooprophylactic Institute confirmed that 2,170 of the 49,472 birds are infected with the disease, and 170 of them have died from it.  Control measures implemented include disinfection, traceability, stamping out, surveillance, and official disposal of carcasses, by-products, and waste.  The source of this outbreak is unknown. +
+
+ Cambodia (HPAI H5N1) +
+ The Ministry of Health in Laos reported an outbreak of H5N1 in the Kampot province on May 10.  A total of 349 chickens, one duck, and 37 chicken eggs from seven families in Chhouk district's Koh Russei village were culled and burned by health officials. The source of the outbreak is unknown. A girl had died from H5N1 in Kampot in 2014. +
+
+ Taiwan (HPAI H5N2) +
+ The Tainan City Animal Health Inspection and Protection Office report that in Taipei on May 4, around 5,000 chickens were culled after an avian influenza outbreak was confirmed. The Animal Health Research Institute under the Council of Agriculture confirmed that on May 2, the dead chicken had been infected with the avian flu virus H5N2 after conducting tissue sample tests. The office also completed the disinfection of the affected farm, other poultry farms within a 1 kilometer radius, and the surrounding paths and highways. As of the time of press, no abnormal poultry deaths had been reported on any other poultry farms. The cause of the outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+
+ China (LPAI H7N9) +
+ In April 2016, the Jiangsu Province reported six cases of human infection with the H7N9 avian +
+ influenza with five deaths. Since the beginning of 2016 there were a total of twenty-one cases of +
+ H7N9 avian influenza and a total of nine deaths. +
+
+ Egypt (HPAI H5N1) +
+ The Egyptian MOH posted a confirmation of a human avian flu infection in the Dakahalia +
+ Governate. A fifty-year-old man is under hospital treatment in Mansoura as of May 14. +
+ It is suspected to be a case of H5N1.  This is the 5th case reported in Egypt in 2016. +
+
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_05_27.html b/data/flu-report-html/usgs_avian_flu_report_2016_05_27.html new file mode 100644 index 0000000..24febc2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_05_27.html @@ -0,0 +1,2059 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from May 27, 2016 +

+
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+ + News Update 160526 (5/26/2016) +
+
+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ Cameroon (HPAI H5N1) +
+ The Minister of Public Health, Minister of Livestock, Fisheries, and Animal Industries, and Minister of Communication reported a case of highly pathogenic H5N1 avian influenza virus at a government-run poultry complex in Mvog Beti, Yaounde.  As many as 15,000 birds have died beginning on 5/22 and the remaining birds were slaughtered and disposed of this week.  Surveillance measures have been implemented in order to prevent the virus from spreading.  The source of this outbreak was not reported.  Cameroon last reported H5N1 in 3/12/2006, but adjacent Nigeria has had multiple H5N1 outbreaks in 2016. +
+
+ + Avian Influenza in Humans + +
+ China (H7N9) +
+ Officials have reported 2 new human cases of H7N9 avian influenza virus in China.  There has been no further information released about the first patient, a 63-year-old male from Meizhou City in Guangdong.  The second patient, a 57-year-old male from Xinji City in Hebei province, began exhibiting symptoms of headache and fever on May 10, and on May 16 was admitted to Hengshui City hospital.  This patient continues to undergo treatment, and remains in serious condition.  It is unknown how either of these men contracted the disease. +
+
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_06_07.html b/data/flu-report-html/usgs_avian_flu_report_2016_06_07.html new file mode 100644 index 0000000..c4ab2bd --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_06_07.html @@ -0,0 +1,2091 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 07, 2016 +

+
+ + newer + +
+ + News Update 160602 +
+
+
+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ China (H9) +
+ Chinese Medical Journal published a study reporting that the nucleic acid material from H9 avian influenza virus was found in samples taken from a live poultry market (LPM) in Guangxi. In addition to airborne detection, the same study showed that 699/1525 (45.8%) of environmental samples of cages, sewage and surfaces were positive for avian influenza virus. Of these, 20.0% were positive for H5 and 30.5% positive for H9. Previous studies have shown that LPMs were closely linked to infections of humans with H9N2, H5N1, and H7N9, while chickens have been directly shown to be infected with airborne H5N1 and H9N2. The researchers did not explain why only H9 was detected in the airborne samples but not H5. They advocated for active surveillance of LPMs as the markets plays an important role in the dissemination of avian influenza viruses and surveillance should be carried out as an early warning system for avian influenza outbreaks. +
+
+ Egypt (HPAI H5N1) +
+ The Central Department for Preventive Medicine of the General Authority for Veterinary Services, Ministry of Agriculture reports control of the 101 total outbreaks in 18 governorates and municipalities including: Assiut, Aswan, Beheira, Cairo, Dakahlia, Fayoum, Giza, Luxor, Menoufia, Minya, Qena, Qalyubia, Sinai, and Sohag. The precautionary measures taken to counter the poultry disease include: the application of home education about biosafety controls for birds, the follow-up biosecurity on farms and routine immunization, the quarantine of the affected farm, the safe disposal of infected and dead birds, and to disinfect and clean nests of infected poultry farms. +
+
+ France (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports a low pathogenic outbreak of avian influenza H5N2 in the Coudures, in the Landes Department in France. Samples taken as part of surveillance measures confirmed the presence of H5N2 influenza on April 28, 2016 on a farm with 10,300 breeders. The birds have been destroyed. Control measures implemented were screening, disinfection, traceability, and stamping out. The source of the outbreak is unknown. A total of 11 LPAI H5N2 outbreaks have been reported in France since 10/15/15. +
+
+ Indonesia (HPAI H5N1) +
+ The Agriculture and Food Sovereignty office in East Jakarta reports that city administration officials in the Rambutan subdistrict of the Ciracas district, confirmed that two out of five birds have tested positive for bird flu. A total of 113 chickens had died and the owner reported the case to the subdistrict officer. Government workers disassembled the remaining chicken coops and destroyed the remaining chickens to prevent the possible spread of the virus. The cause of the outbreak is unknown. +
+
+ Niger +
+ The World Organisation for Animal Health (OIE) confirmed an outbreak of highly pathogenic H5N1 in Niamey reported in February. The 86,000 ISA Brown layers affected were destroyed. Control measures implemented include disinfection, quarantine, and surveillance. Further measures to be implemented are movement control within the country, dipping/spraying, and official disposal of carcasses, by-products, and waste. The source of the outbreak is unknown, but neighboring Cameroon had also reported the detection of HPAI H5N1 last week. +
+
+ Taiwan (HPAI H5N2) +
+ The Council of Agriculture confirmed a new bird flu case on June 2 involving a chicken farm in Taixi Township, Yunlin County. Test results showed that some chickens were infected a new strain of the highly pathogenic H5N2 avian influenza. All 10, 356 animals were culled.  The cause of the outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+
+ China (HPAI H5N6) +
+ The provincial center for disease control and prevention reported a case of H5N6 in central China's Hunan Province. The patient is a 50-year-old male from Guzhang County in the Tujia-Miao Autonomous Prefecture of Xiangxi. He developed symptoms while working in Jishou City of the prefecture and is in critical condition. +
+
+ China (LPAI H7N9) +
+ The Beijing Municipality Health and Family Planning Department reports a case of H7N9 influenza in the Tongzhou district of Beijing at the end of May. The patient is a 49-year-old male. It is unknown how this man contracted the disease. This is the 7th case reported by Beijing since the virus first appeared in 2013. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_06_10.html b/data/flu-report-html/usgs_avian_flu_report_2016_06_10.html new file mode 100644 index 0000000..7b7d25a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_06_10.html @@ -0,0 +1,2091 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jun 10, 2016 +

+
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+ + 160609 Weekly Summary +
+
+ News Update +
+
+ Avian Influenza in Poultry +
+
+ Egypt  (suspected H5N8) +
+
+ On June 8, 2016, 500 samples from three Egyptian governorates: Beni Suef, Minya and Eastern, were sent to the laboratories of Research Institute of Animal Health for testing. Some local media had said that the H5N8 strain of avian influenza, which devastated the United States poultry industry in 2015, has been found for the first time in Egypt. +
+
+ The General Union of Poultry Producers asked the Minister of Agriculture Dr. Essam Fayed, to approve the disbursement of more than 5.1 million pounds for funding to protect the poultry industry in anticipation of a positive result.  High mortality rated in poultry farms has doubled in farms throughout the country. +
+
+ Hong Kong (LPAI H7N9) +
+
+ On June 5, 2016, as a result of routine surveillance testing at the University of Hong Kong, fecal droppings of live poultry have tested positive for the H7N9 avian influenza virus. The samples were taken from a poultry stall in Yan Oi Market in Tuen Mun on May 16. The Agriculture, Fisheries and Conservation Department (AFCD) declared the status of the live poultry stalls at Yan Oi Market in Tuen Mun as infected.  Yan Oi and a second live bird market were closed for thorough disinfection and cleansing.  Live poultry stall operators normally slaughter all live poultry in the stalls before 8pm every evening and no live poultry can be kept on the premises between 8pm and 5am the following day so premises can be disinfected. In the present case, the markets were closed for three days but were re-opened on Jun 9, right before the popular Dragon Boat Festival. +
+
+ Each month, a total of 300 fecal and drinking samples are taken from 30 venues, including 25 live poultry stalls at Food and Environmental Hygiene Department approved markets and five licensed fresh provision shops with endorsement to sell live poultry for testing by University of Hong Kong. +
+
+ The AFCD has conducted inspection on all local chicken farms and all samples collected for AI testing have been negative.  Import of live poultry will also be suspended.  Surveillance and monitoring of local chicken farms will continue. All poultry farmers are instructed to immediately report any abnormalities and adhere strictly to the biosecurity measures at the farms. +
+
+ Nigeria (HPAI H5N1) +
+ The World Organization for Animal Health (OIE) reports a reoccurrence of H5N1 outbreaks in Nigeria. National Veterinary Research Institute confirmed 1,053 birds have died in the state of Rigasa, Kaduna South, Kaduna. A total of 3,947 birds were destroyed.  A second H5N1 outbreak had occurred in Zaia where 6000 birds have died on a farm with 30,000 19-week-old layers. In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
+
+ Taiwan (HPAI H5N2) +
+ On June 8, 40,864 chickens at a chicken farm in Pingtung County, southern Taiwan, were culled after the farm was confirmed to have been infected with H5 subtype avian influenza. The Pingtung County government has begun monitoring and specimen collection within one kilometer of the chicken farm to make sure neighboring poultry farms are virus-free. +
+
+ The animal health authorities in Tainan, southern Taiwan, reported Saturday a new bird flu case involving a chicken farm in the municipality's Xiaying District.  The farm was sampled for tests May 23, and the test results, released two days later, indicate that it was infected with the H5 avian influenza virus, according to the Animal Health Inspection and Protection Office.  All 13,926 chickens on the farm were culled. +
+
+
+ + Avian Influenza in Humans + +
+
+ China (HPAI H5N6) +
+
+ The Centre for Health Protection (CHP) of the Department of Health (DH )reported a case of H5N6 in central China's Hunan Province. The patient is a 50-year-old male who lives in Xiangxi, Hunan. The patient developed symptoms on May 23 and was admitted to a local hospital on May 28. He is now in a critical condition. +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_06_17.html b/data/flu-report-html/usgs_avian_flu_report_2016_06_17.html new file mode 100644 index 0000000..8065128 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_06_17.html @@ -0,0 +1,2073 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jun 17, 2016 +

+
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+ News Update +
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+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ Indonesia (Suspect HPAI H5N1) +
+ The Department of Agriculture, Fisheries, and Livestock (Distankakan) reports a possible outbreak of avian influenza HPAI H5N1 in East Barito, Central Kalimantan Province where dozens of chickens died suddenly. They suspect the chickens died of bird flu, and are waiting for results from the samples sent to the Veterinary Banjar Baru laboratory. +
+
+ Lebanon (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports that an outbreak of highly pathogenic avian influenza virus (H5N1) in Sariin Tehta, Bekaa District, ALlBiqa' province that began on 5/10/16 has been resolved as of June. There were 126,000 birds susceptible of which 20,000 were infected and died. The remaining 106,000 birds were destroyed. Control measures implemented were disinfection, traceability, dipping/spraying, quarantine, stamping out, surveillance, official destruction of animal products, and official disposal of carcasses, by-products, and waste. The source of the outbreak stemmed from the illegal movement of animals. +
+
+ The Netherlands (Poss LPAI H7N9) +
+ The World Organisation for Animal Health (OIE) reports an outbreak of low pathogenic avian influenza LPAI H7N9 in Hiaure in Friesland province. They have established a transportation ban for poultry, poultry manure, eggs, used litter an area of one kilometer around the holding in the municipality Dongeradeel. There were no deaths, but all 44, 630 chickens were destroyed. Control measure implemented were stamping out, movement control inside the country, screening, and zoning. The source of the outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+
+ Eight new human cases of avian influenza in Tianjin, Beijing, Hebei, Jiangsu, and Laioning were announced this week. On June 7, 2016, a patient from the Dachang area in Jiangsu province was reported to have been infected with avian influenza. On June 15, 2016, the Tianjin Municipal Commission of Health and Family Planning, said two patients from the provinces of Hebei and Tianjin were hospitalized for the management of severe pneumonia were infected with H7N9; both had contact with poultry, but were not epidemiologically linked. Another patient, a 68-year-old woman was also hospitalized in Hebei with H7N9 , but was later transferred to the capital when her symptoms took a turn for the worst. She had no recent contact with poultry. The Tiexi District of Shenyang in Liaoning province reports a 67-year-old patient who was hospitalized with a H7N9 after disposing of some sick poultry he raised. He is in stable condition following initial reports of fever. In addition, another three cases were reported: A 57-year-old male from Shijiazhung, Hubei province was in serious condition, a 45-year-old male from Changzhou, Hubei province who worked in a market with poultry, and a 53-year-old woman from Huai'an, Jangsu province who had live poultry contact. They were in serious condition. +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_06_24.html b/data/flu-report-html/usgs_avian_flu_report_2016_06_24.html new file mode 100644 index 0000000..bc3516c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_06_24.html @@ -0,0 +1,2087 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Jun 24, 2016 +

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+ News Update +
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+ Avian Influenza in Animals +
+
+ Russia (HPAI H5) +
+ The World Organisation for Animal Health (OIE) reports of an outbreak of highly pathogenic avian influenza virus (HPAI H5) on June 17, in Ubsu-Nur, Ovyursky District, in the Republic of Tuva. The positive animals include four grey herons, one great crested grebe, six black-headed gulls, one common tern, four great cormorants, and one unidentified duck. Wild birds were shot and tested for avian influenza as part of a surveillance program. The total number of birds tested was not provided and the neuraminidase subtype was also not provided. Sequencing of a portion of the hemagglutinin gene indicated that the viruses belong to the clade 2.3.4.4, which is the same lineage as the highly pathogenic avian influenza viruses found in Europe, Asia and North America in 2014/2015 +
+
+ + Avian Influenza in Poultry + +
+ China (HPAI H5N6) +
+ The World Organisation for Animal Health (OIE) issued a follow up report on June 7 to confirm the outbreak of highly pathogenic avian influenza virus (HPAI H5N6) on a farm in Sangzhi in Hunan province. There was a susceptible population of 29,918 birds and 605 cases of avian influenza resulting in 293 deaths. 293 birds died on a farm with a total of 29,625 birds. The remaining birds were destroyed. Control measures implemented were movement control inside the country, disinfection, modified stamping out, and zoning. The source of the outbreak is unknown. This is the 35th H5N6 outbreak in China since the virus was first detected in 8/24/14. +
+
+ Egypt (HPAI H5N1) +
+ The national authorities reported a confirmed outbreak of H5N1 HPAI in from Ind Elaas, Sharqia governorate on June 18 in a population of 4,000 ducks. They tested positive for the virus and were destroyed. The source of the outbreak is unknown. +
+
+ The national authorities also reported a confirmed outbreak of H5N1 HPAI in Kafr Elawy, Cairo on June 18 in ten chickens. The chickens were destroyed. The source of the outbreak is unknown. +
+
+ Macao (H7) +
+ On June 22, the Civic and Municipal Affairs Bureau suspended live poultry trade for three days in Macao after samples have tested positive for an H7 avian influenza virus at the Iao Hon Market in the Portuguese Territories. They culled 8,000 chickens and 1,000 pigeons from the market. Control measures implemented were inspection and disinfection of the slaughterhouses and markets. The cause of the outbreak is unknown. This is the second suspension of live poultry trade this year in Macao. In February, the live poultry trade suspended poultry sales for three days due to an H7 avian influenza virus strain detected in poultry at a different market. +
+
+ Taiwan (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) issued a follow up report on June 20 for the HPAI H5N2 avian influenza outbreaks in Taichung City and Yunlin County. In the Da'an District of Taichung City, 19 native chickens were destroyed. In the Waipu District of Taichung City, 495 native chickens were susceptible, there were 68 cases that ended in death, and 427 chickens destroyed. In the Taixi Township of Yunlin County, there were 13,580 susceptible native chickens, 3,224 cases that ended in death, and 10,356 native chickens destroyed. The totals of the three outbreaks in chickens were 14,094 susceptible, 3292 cases, 3292 deaths, and 10,802 destroyed. Control measures include movement control inside the country, screening, disinfection/disinfestation, quarantine, and stamping out. The cause of the outbreak is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (HPAI H9N2) +
+
+ The Health and Family Planning Commission of the Guangdong Province reported a new case of H9N2 in Meizhou on June 19. The patient is a four-year-old girl who is hospitalized and in serious condition.  The cause of the outbreak is unknown. The Guangdong CDC experts issued a warning that the public should remain vigilant, avoid live poultry markets, and not buy product of birds with unknown origins. +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_07_05.html b/data/flu-report-html/usgs_avian_flu_report_2016_07_05.html new file mode 100644 index 0000000..a50d1f9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_07_05.html @@ -0,0 +1,2078 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 05, 2016 +

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+ News Update +
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+ Avian Influenza in Animals +
+
+ China (H5N1) +
+
+
+ Veterinary officials announced that H5N1 was detected in 2 African lions kept in a zoo in the Hubei province city of Ezhou. Testing was done at a military veterinary hospital. Testing was triggered by illness in two African lions who had high fevers. The male lion ultimately died, but the female has recovered. No similar illnesses have been seen in the zoo's other animals, but the the park's birds were vaccinated against H5N1. The detection is the first known H5N1 infection in lions, though China reported fatal infections in tigers in 2014 and 2015. +
+
+ + Avian Influenza in Poultry +
+
+ Ghana (H5N1) +
+
+
+ On June 28, 2016, the World Organization for Animal Health (OIE) reported 2 H5N1 outbreaks in Ghana.  Dr Kenneth M. K. Gbeddy, Chief Veterinary Officer, Veterinary Services Directorate, Ministry of Food and Agriculture, Accra, Ghana confirmed 3944 birds have died.  A total of 1,764 birds were destroyed in outbreaks in Ashanti province and in the Greater Accra Metropolitan Area.  In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
+
+ + Nigeria (H5N1) + +
+
+ The World Organization for Animal Health (OIE) reports a reoccurrence of H5N1 outbreaks in Nigeria. National Veterinary Research Institute confirmed 1,355 birds have died in Olorunda, Lagos. A total of 2,645 birds were destroyed.  In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
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+ Page Last Modified: +May 19, 2016 +
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+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_07_12.html b/data/flu-report-html/usgs_avian_flu_report_2016_07_12.html new file mode 100644 index 0000000..f1eaa26 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_07_12.html @@ -0,0 +1,2096 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Jul 12, 2016 +

+
+ + newer + +
+ + 160706 Weekly Summary +
+
+ News Update +
+
+ Avian Influenza in Poultry +
+
+
+ Cameroon (HPAI H5N1) +
+
+ A total of 16 outbreaks of avian influenza in poultry farms, as early as May 20, 2016 were reported to the OIE on July 4 by Dr Gaston Djonwe, Directeur des Services Vétérinaires, Services Vétérinaires, Ministère de l'Elevage, des Pêches & des Industries Animales, Yaoundé, Cameroon.  The total number of birds susceptible totaled 34,157 of which 7040 died and 26,981 were destroyed.  In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
+
+ Ontario (LPAI H5N2) +
+
+ On July 8, 2016, Canadian officials reported that a low pathogenic subtype of the H5N2 avian influenza was detected on a commercial duck farm near the town of St Catharines in the province of Ontario.  30 birds were sampled on July 4, 2016 as part of pre-export testing. 15 of the samples tested positive for avian influenza and 14 for the H5 subtype by RT-PCR. Sequencing of a portion of the H5 hemagglutinin gene showed that the virus was most closely related to North American low pathogenic H5 avian influenza viruses of wild bird origin and not to the strains of highly pathogenic avian influenza H5N2/H5N8 that affected the US and Canada last year. Chief CFIA veterinary officer Harpreet Kochhar said all 14,000 birds would be humanely killed and disposed of. The farm is under quarantine, and recent movements of birds and farm equipment onto and off the property are being tracked. A surveillance zone 3km in radius was established and all poultry operations within the zone have tested negative for avian influenza. +
+
+ Taiwan (HPAI H5) +
+
+
+ The animal health authorities in the Xinhua District of Tainan in southern Taiwan, reported Saturday a new bird flu case involving a goose farm. The farm was sampled for disease after the farmer reported abnormal deaths beginning on July 1.  All 1,048 geese on the farm were culled. The county government has begun monitoring and doing specimen collection within one kilometer of the farm to make sure neighboring poultry farms are virus-free. Nothing abnormal was detected as of July 5, 2016. +
+
+
+ Vietnam (HPAI H5N6) +
+
+ The World Organization for Animal Health (OIE) reports a reoccurrence of H5N6 outbreaks inVietnam.  Dr Dong Pham Van, Director General, Chief Veterinary Officer, Department of Animal Health, Ministry of Agriculture and Rural Development, Hanoï, Vietnam reported 1 new outbreak on a farm in the central coastal province of Quang Ngai.  700 birds died, and a total of 3,000 birds were destroyed.  In addition to destroying susceptible birds, measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
+
+
+ + Avian Influenza in Humans + +
+
+ China (LPAI H7N9) +
+
+ On June 17, the Centre for Health Protection (CHP) of the Department of Health (DH) reported the death of a 67-year-old male from Shenyang in central China's Liaoning Province from H7N9.  The man became feverish after he butchered a chicken at home. He was admitted to a local hospital, where his condition was stabilized before getting worse, the commission said. Close contacts and those with the same exposure were put under medical observation with no abnormalities so far. This is the first case of human infection with H5N6 in Liaoning province and is the 5th case in June. +
+
+
+ Egypt (HPAI H5N1) +
+
+ The Directorate of Health in Qena province reported a human case of H5N1 in the northern province of Qena.  Imran Mustafa Khalifa, age 27, has been admitted to the Qena Fever Hospital for treatment. Close contacts and those with the same exposure were put under medical observation to make sure they are free of the disease. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_07_19.html b/data/flu-report-html/usgs_avian_flu_report_2016_07_19.html new file mode 100644 index 0000000..812a41b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_07_19.html @@ -0,0 +1,2078 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 19, 2016 +

+
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+ News Update +
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+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+
+ Egypt (HPAI H5N1) +
+
+ The Food and Agriculture Organization of the United Nations reported that four separate outbreaks of avian influenza in farms with mixed flocks in four govenorates. Two were in Qaliubiya, and one each in   Assiut, and Menia. A total of 56 birds were destroyed. The first outbreak occurred on 7/4/16 and the last on 7/5/16. +
+
+ Ghana (HPAI H5N1) +
+
+ Dr Kenneth M. K. Gbeddy, Chief Veterinary Officer, Veterinary Services Directorate, Ministry of Food and Agriculture, reported 2 different outbreaks of avian influenza in Ghana.  The first began in Old Amanfro, Ga South, Greater Accra on 7/01/16 where 250 birds died.   The second was in Kasoa, Ewutu Senya East Municipality, Central province where 766 adult cockerals, hens, and cocks either died or were destroyed. +
+
+ Iraq (unspecificd bird flu-likely to be HPAI H5N1) +
+
+ The Governor of Wasit, Iraq, Malik Khalaf Elwadi, announced today on 7/10/16 that entry of live chickens and eggs was banned to the province because of the spread of bird flu among people in the areas south of Baghdad. The ban was imposed after the governor received information and reports indicating the exposure of a number of citizens in the areas south of Baghdad, including the Al Madaen, and Al Wehdah neighborhoods. Local media sources are reporting outbreaks in adjacent Wasit province. A statement from the ministry of Agriculture as well as the Ministry of Health may be forthcoming to clarify the situation since so few details were provided. +
+
+ Taiwan (HPAI H5N8) +
+
+ The Bureau of Animal and Plant Health Inspection and Quarantine (BAPHIQ) reported on three new cases of avian influenza infection from July 3 to 5.  A total of 495 geese were culled after H5N8 was confirmed at a poultry farm in the eastern county of Hualien.  In Kaohsiung, a total of 834 chicken carcasses were destroyed, and local health authorities traced the origin of the contaminated chicken carcasses to a poultry farm in neighboring Pingtung County and disinfected the premises.  Thirdly, 1,048 geese at a farm in the Xinhua District of Tainan in southern Taiwan were destroyed after samples from the farm tested positive. +
+
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+ Page Last Modified: +May 19, 2016 +
+
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+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_07_26.html b/data/flu-report-html/usgs_avian_flu_report_2016_07_26.html new file mode 100644 index 0000000..b45654c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_07_26.html @@ -0,0 +1,2082 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 26, 2016 +

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+ + 160721 Weekly Summary +
+ News Update +
+
+ Avian Influenza in Animals +
+
+ Avian Influenza in Poultry +
+
+ France (HPAI H5 and H5N1) +
+ The French Ministry of Agriculture has announced two new outbreaks of avian influenza.  On July 18, 2016, the town of La Dornac in the department of Dordogne reported that 4400 outdoor chickens were infected with HPAI H5N1.  1000 died and 3400 were destroyed.  This outbreak brings the total in this region to 16. +
+

+

+ In the town of Vareilles in the department of Aveynon, HPAI H5 avian influenza has been detected in 2080 6-week-old ducks and 2917 two-week-old ducklings were affected, 1875 were destroyed. The neuraminidase subtype wwas not reported. This is the first time that Aveynon has been affected. +
+

+

+ All of the new subtypes are described as European lineage as opposed to the more dangerous Asian H5N1 virus.  Control measures implemented were: movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ Hong Kong's Center for Health Protection (CHP) were notified of three additional cases of avian influenza (H7N9) in the Mainland and have issued a warning to the public to maintain strict personal, food, and environmental hygiene locally and while traveling. +
+

+

+ Those affected include a 61-year-old man in Jiangsu who had poultry exposure, a 54-year-old woman in Anhul with no poultry exposure, and a 52-year-old man who worked in a market in Zhejiang.  The market worker died, and the remaining two patients are listed in serious condition. +
+
+ From 2013 to date, 770 human cases of avian influenza A(H7N9) have been reported by the Mainland health authorities, while since October 2015 to date, 113 have been recorded. The DH's Port Health Office conducts health surveillance measures at all boundary control points using thermal imaging systems to detect suspected cases by monitoring body temperatures. Suspected cases are immediately referred to public hospitals for checkups. The display of posters and broadcasting of health messages is underway. +
+

+

+ The public is advised to remain vigilant and take heed of the following advice against avian influenza: Do not visit live poultry markets and farms; avoid contact with poultry, birds and their droppings; if contact has been made, thoroughly wash hands with soap; avoid entering areas where poultry may be slaughtered and contact with surfaces which might be contaminated by droppings of poultry or other animals; poultry and eggs should be thoroughly cooked before eating; wash hands frequently with soap, especially before touching the mouth, nose or eyes, handling food or eating, after going to the toilet, or touching public installations or equipment (including escalator handrails, elevator control panels and door knobs), and when hands are dirtied by respiratory secretions after coughing or sneezing; cover the nose and mouth while sneezing or coughing, hold the spit with a tissue and put it into a covered dustbin; avoid crowded places and contact with fever patients; and wear masks when respiratory symptoms develop or when taking care of fever patients. +
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+ Page Last Modified: +May 19, 2016 +
+
+
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_07_29.html b/data/flu-report-html/usgs_avian_flu_report_2016_07_29.html new file mode 100644 index 0000000..762be9f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_07_29.html @@ -0,0 +1,2096 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Jul 29, 2016 +

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+ Avian Influenza in Animals +
+
+
+ New research in the Proceedings of the National Academy of Sciences by St. Jude Children's Research Hospital suggests that highly pathogenic flu viruses do not persist in wild birds.  The results of the study indicates that while migratory waterfowl are known carriers of low pathogenic flu viruses this is not the case with highly pathogenic flu viruses that could be associated with more severe illness. In the study, researchers analyzed throat swabs and other biological samples from 22,892 wild ducks and other aquatic birds collected before, during, and after a 2014-15 clade 2.3.4.4 HPAI H5 outbreak in poultry. This outbreak has been linked to a highly pathogenic H5N8 influenza virus A spread from Asia via migratory waterfowl. The H5N8 virus mixed with other influenza viruses in North America and caused 248 outbreaks in commercial and backyard turkey farms in the U.S and Canada. Officials worked to end these outbreaks by quarantining and eliminating infected poultry. In spite of the worry that the highly pathogenic virus would be re-introduced into poultry farms by aquatic birds carrying the virus, none of the birds analyzed were infected with a highly pathogenic flu virus during the subsequent fall and spring migration. In the paper, the sampling was conducted in Canada, the Mississippi flyaway, and along the U.S. Atlantic coast by David Stalknecht and Rebecca Poulson of the University of Georgia and Richard Simmons, Andrew Bowman, Jacqueline Nolting from the Ohio State University in conjunction with Scott Krauss and James Knowles of St. Jude. The sampling was done as part of the federally funded Centers of Excellence for Influenza Research and Surveillance. Highly pathogenic viruses have not been identified in any of the more than 100,000 wild birds tested since the flu surveillance started 43 years ago. Existing immunity in wild birds is one of the possible explanations for why highly pathogenic viruses do not become established in wild bird populations. There were no reported cases of human cases of influenza in this outbreak, but other H5 viruses are known to spread to humans with deadly results. +
+
+ + Avian Influenza in Poultry + +
+ Denmark (LPAI H7N7) +
+
+ On July 27, the Danish Veterinary and Food Administration reported an outbreak of LPAI H7in a flock of ducks on the island of Funen. A herd of mallard ducks on Funen in Brenderup affected by the less severe avian flu H7N7. The crew consists of 3,000 ducklings. To prevent infection and to prevent the virus evolving the infected ducklings will be killed, and the DVFA created a 1km restricted zone around the farm. Those in the restricted zone are not allowed to move poultry, other captive birds, lay poultry, day-old chicks and eggs within, into, and from the restricted zone; hold fairs, exhibitions, markets, kapflyvninger or any other collection of poultry or other birds in the restricted zone; expose feathered to reconstruction of wildlife in the restricted zone; and remove or spread used litter, manure, or slurry within the restricted zone.  The ban on the movement of poultry, captive birds, lay poultry, day-old chicks, and eggs does not apply to direct transportation by road or rail. The cause of this outbreak is unknown. +
+
+ France (HPAI H5N1) +
+
+ The French Ministry of Agriculture has reported a case of highly pathogenic avian influenza H5N1 in Aveyron and two cases in Dordogne Departments last week as part of the monitoring strategy accompanied by increased vigilance of the actors in the poultry sector.  These outbreaks, which began in November of last year, have produced no fewer than 5 new strains of avian flu, including HPAI H5N1, H5N2, and H5N9, along with LPAI H5N2 and H5N3. All of these subtypes are described as being of European lineage and have not infected humans. They are also not descended from the more dangerous Asian H5N1 virus. +
+
+ In one of the outbreaks, H5N1 was reported on a farm in Dordogne housing a flock of ducks for fattening located in a range within a few hundred meters from a previously identified farm that had tested positive on 13 July 2016. The flock was detected through sampling within the framework of epidemiological investigations of this first outbreak in La Dornac. There were no clinical signs. The United Kingdom's Department of Environment, Farming and Rural Affairs (DEFRA) said: "These new cases suggest that disease is still circulating or that viral contamination is still present in certain areas.". +
+
+ Ivory Coast (HPAI H5N1) +
+
+ The World Organisation for Animal Health (OIE) reported 10 new outbreaks in Agnibilekrou (1), Abidjan (7), and Bouake (2). There were a total of 33,348 birds susceptible, 4253 cases, 4248 deaths, 25395 slaughtered, and 7 slaughtered. The source of the outbreak is unknown or inconclusive, but thought to be introduced by new live animals. Some of the outbreaks reported this week dates from March. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+
+ On July 26, The Beijing CDC confirmed a new case of a human infected with H7N9 avian influenza.  The patient is a 36-year-old male from Yanjiao-a, Langfang City, Hebei Province in critical condition being treated in isolation in a hospital in Beijing. Up to now, Beijing reported three cases of human infection with H7N9 influenza in 2016. The man has a history of live poultry exposure. +
+
+ In the Henan province, the Family Planning Committee reported its first case of H7N9 avian influenza in humans. The patient is a 54-year-old female farmer whose exposure to poultry or live bird markets is unknown. This is the first case in Henan since 2013. +
+
+ Egypt (HPAI H5N1) +
+
+ The World Health Organisation reports three new human cases of avian influenza A (H5N1) virus. In the Cairo Governorate, the patient is a 2-year-old male who had the onset of influenza-like illness symptoms on May 30, tested positive for A(H5N1).  The patient was hospitalized, treated with antivirals for pneumonia, and recovered. Prior to his illness, the patient had visited a family member who raised birds. In addition to the male patient, an 8-year old girl had an onset of illness on June 18 after being exposed to poultry or poultry-related environments. She was hospitalized with pneumonia, received antiviral therapy, and recovered. +
+
+ In the Menia Governorate, a 30-year-old female had onset of illness on June 11 after exposure to poultry or poultry-related environments. She was hospitalized with pneumonia, received antiviral therapy, and has recovered. +
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+
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+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_08_17.html b/data/flu-report-html/usgs_avian_flu_report_2016_08_17.html new file mode 100644 index 0000000..76e773f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_08_17.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ + 160811 Weekly Summary +
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+ Avian Influenza in Poultry +
+
+ Denmark (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports cases of low pathogenic H5N2 avian influenza virus at a mallard duck farm in the province of West Jutland.  This was confirmed by the Danish Veterinary and Food Administration (Fødevarestyrelsen), after samples were tested by the National Veterinary Institute.  Samples were taken as part of a national surveillance program, and all 1,200 ducklings on the farm will be culled to prevent the disease spreading.  Additional control measures include movement control, quarantine, zoning, disinfection and disinfestation, stamping out, and official disposal of carcasses, by-products, and waste.  The source of this outbreak is unknown. +
+
+ France (LPAI H5N3) +
+ The World Organisation for Animal Health (OIE) has reported a case of low pathogenic H5N3 avian influenza virus on farms in the Department of Tarn.  Samples, taken as a part of programmed surveillance and pre-movement sampling, tested positive for the disease.  All 120 ducks and 50 geese were culled to prevent spread of the disease.  In addition to culling other control measures implemented include: movement control; screening; disinfection and disinfestation; traceability; stamping out; surveillance; and zoning.  The source of this outbreak is unknown. +
+
+ France (LPAI H5) +
+ The World Organisation for Animal Health (OIE) has reported a case of low pathogenic H5N3 avian influenza virus on farms in the Department of Gers.  Samples, taken from a farm with 6,000 free-living ducks has tested positive for the virus.  The neuraminidase subtype could not be determined. +
+
+ Ghana (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports cases of highly pathogenic H5N1 avian influenza virus in the province of Central and in the Greater Accra Region.  A total of 1,649 birds died of the disease, and the remaining 1,245 were culled to prevent further spread.  Additional control measures include movement control, disinfection and disinfestation, quarantine, and stamping out.  The source of these outbreaks is unknown. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ In July of this year, a total of 5 people in China were infected with low pathogenic H7N9 avian influenza virus.  In June, China reported 7 people infected, unusually high numbers for the war months.  Details are on the 5 July cases are lacking, and the public is warned to be extra careful when around live poultry. +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_09_01.html b/data/flu-report-html/usgs_avian_flu_report_2016_09_01.html new file mode 100644 index 0000000..5eefb12 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_09_01.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Sep 01, 2016 +

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+
+ USA (HPAI H5N2) +
+ An apparently healthy mallard, sampled as part of a national surveillance program to detect highly pathogenic avian influenza has been confirmed by the USDA to have been infected with the same HPAI H5N2 virus that affected poultry farms in the Midwest in 2014/2015. The bird was among a group of waterfowl sampled at a wildlife refuge located outside Fairbanks, Alaska. This is the first appearance of the H5N2 virus since June 2015, and the first time any HPAI viruses have been reported in Alaska. +
+
+ + Avian Influenza in Poultry + +
+ Togo (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reported two cases of highly pathogenic H5N1 avian influenza virus on poultry farms in the Maritime Region. In Adetikope, 10,350 birds died on a semi-modern farm without biosecurity, H5N1 was confirmed after samples were tested by the National Veterinary Laboratory.  The remaining 3000 birds were culled to prevent further spread of the disease. In Adidogome, 950 birds died on a farm with no biosecurity and the remaining 30 birds were destroyed. Additional control measures include movement control, disinfection and disinfestation, traceability, quarantine, surveillance, and official disposal of carcasses, by-products, and waste.  Other measures that are scheduled to be applied are screening, stamping out, and control of wildlife reservoirs.  The last time Togo was affected with HPAI H5N1 was in 2008. The cause of this outbreak is unknown, but the adjacent countries in western Africa have been battling H5N1 since 2015. +
+
+ + Avian Influenza in Humans + +
+ China (LPAI H7N9) +
+ The Centre for Health Protection (CHP) of the Department of Health (DH) reports 5 cases of low pathogenic H7N9 avian influenza virus in Beijing, Hebei Province, and Fujian Province.  A 79-year-old man in Fujian died on July 10 after visiting a market, and a 78-year-old man in Fujian is in serious condition after being exposed to poultry.  A 35-year-old man in Beijing is in serious condition after being exposed to poultry in Jiangxi.  Two patients who live together in Hebei (a 13-year-old girl and a 68-year-old woman) are both in stable condition.  A total of 118 cases of H7N9 avian influenza have been recorded by health authorities since last October. +
+
+ China (H9N2) +
+ In February, a human case of H9N2 avian influenza virus occurred in the city of Chengdu.  The patient, a 53-year-old female, was admitted to Chengdu Public Health Clinical Medical Center on February 15, and died on February 19.  The patient had no history of contact with live poultry. +
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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_09_09.html b/data/flu-report-html/usgs_avian_flu_report_2016_09_09.html new file mode 100644 index 0000000..c3b108a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_09_09.html @@ -0,0 +1,2070 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 09, 2016 +

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+ News Update September 9, 2016 +

+
+

+ + Avian Influenza in Poultry + +
+ China (HPAI H5N6) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N6 avian influenza virus in Guizhou Province.  Testing was performed at the Harvin Veterinary Research Institute.  A total of 7,167 birds died of the disease, and the remaining 16,717 were culled to prevent further spread.  In addition to culling, control measures include: movement control; screening; disinfection and disinfestation; modified stamping out; zoning; and vaccination.  The source of this outbreak is unknown. +
+

+

+ Ghana (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) has reported additional cases of highly pathogenic H5N1 avian influenza virus in the Central Region and Greater Accra Region.  A total of 1,442 birds died, and the remaining 936 were culled to prevent the disease spreading further.  Additional control measures include movement control, disinfection and disinfestation, quarantine, and stamping out.  The source of this outbreak is unknown. +

+

+ South Africa (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports additional cases of low pathogenic H5N2 avian influenza virus in the Western Cape Province.  A total of 278 ostriches on the farm of 1,790 have been infected.  Control measures consist of movement control, screening, and quarantine.  The source of this outbreak is unknown. +

+

+ South Korea (HPAI H5N8) +
+ The World Organisation for Animal Health (OIE) has reported that the stamping-out and disinfection of the last highly pathogenic H5N8 avian influenza virus affected farm has been completed.  In April total of 49 ducks and chickens were culled on the farm in Gyeonggi-do Province.  This was in accordance to the control measures implemented in March, which included: movement control; disinfection and disinfestation; quarantine; stamping out; zoing; and control of wildlife reservoirs.  There has been no recurrence of this disease in South Korea. +

+

+ + Avian Influenza in Humans + +
+ China (H9N2) +
+ New human cases of H9N2 avian influenza virus have emerged in Jiangxi province and Yunnan province.  The patient in Jiangxi, a 4-year-old girl, was diagnosed on August 19.  The patient in Yunnan, a 10-month-old boy, was diagnosed on August 25.  Both children have recovered, it is unknown how they contracted the disease. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_09_16.html b/data/flu-report-html/usgs_avian_flu_report_2016_09_16.html new file mode 100644 index 0000000..5a29ba2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_09_16.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Sep 16, 2016 +

+
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+

+ News Update September 16, 2016 +

+
+

+ + Avian Influenza in Poultry + +
+ Cameroon (HPAI H5N1) +
+

+

+ The World Organisation for Animal Health (OIE) updated a report on the avian influenza outbreak in Nzemgouen, Bafoussam where owners of a poultry farm indicated high mortality in breeding poultry and through compulsory surveillance avian influenza H5N1 was found.  There were 34400 susceptible birds, 2628 cases, 2628 deaths, and 31772 destroyed. Control measures include movement control, disinfection and disinfestation, traceability, quarantine, surveillance, and official disposal of carcasses, by-products, and waste. The source of the outbreak is unknown. +

+

+ On September 14, the Ministry of Livestock reported a new outbreak of avian influenza H5N1 at a market in Mvog Ada in chicken carcasses. The most recent outbreak was in May. The cause of this outbreak is unknown.  This outbreak has not been officially reported to OIE at the present time. +

+

+ France (LPAI H5N3) +
+ The World Organisation for Animal Health (OIE) reported an outbreak of H5N3 avian influenza in Athos Aspis, in the Department of Pyrénées-Atlantiques. Samples were taken as part of routine surveillance where a laboratory confirmed the presence of low pathogenic H5 virus. All 6,000 birds on the farm were destroyed. Control measures include movement control, disinfection and disinfestation, traceability, stamping out, and surveillance. +

+

+ Ghana (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reported an outbreak of highly pathogenic avian influenza H5N1 in Amanfrom, Ga South, Greater Accra; Mallam Kokrokoo, Mallam, Ga South, Greater Accra; Juma, Ga South, Ablekuma, Greater Accra; Kasoa American Town, Kasoa, Ewutu Senya East Municipal Assembly, Central; Nungua Odukomata, Krowor, Lekma, Greater Accra; and Nungua Estates, Nungua, Lekma, Greater Accra. +

+

+ In Amanfrom, there were 250 susceptible birds, 250 cases, and 250 deaths. In Mallam, there were 702 susceptible birds, 20 cases, 20 deaths, and 682 destroyed. In Juma, there were 390 susceptible birds, 200 cases, 200 deaths, and 190 birds destroyed. In Kasoa American Town, there were 1036 susceptible, 972 cases, 972 deaths, and 64 eight-weeks-old pullets destroyed. In Nungua Odukomata, the affected populations were cockerels, guinea fowls, and local fowls of which 90 birds were susceptible, 32 cases, 32 deaths, and 58 birds destroyed.  In Nungua Estates, there were one-and-a-half-year-old layers affected, of which 400 were susceptible, there were 119 cases, 119 deaths, and 281 birds destroyed. Control measures include movement control, disinfection and disinfestation, stamping out, and quarantine. The cause of this outbreak is unknown. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_10_03.html b/data/flu-report-html/usgs_avian_flu_report_2016_10_03.html new file mode 100644 index 0000000..a640dc2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_10_03.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Oct 03, 2016 +

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+ News Update October 3, 2016 +

+
+

+ + Avian Influenza in Animals + +
+ Antarctica +
+ A new strain of avian influenza (H5N5) has been discovered in Antarctic penguins. In 2015, four chinstrap penguins were found to carry the H5N5 strain. The hemagglutinin gene shared striking similarities with the North American while the neuraminidase gene shared similarities with Eurasian strains. The new strain follows the earlier detection of H11N2 strain in 2013 in Adelie penguins and was also present the following year in a snowy sheathbill suggesting that avian influenza viruses may survive under the ice during the winter and resurface in the summer when migrating penguins return to the area. The influenza has not made the penguins ill.  While the cause of the outbreak is unknown, the mostly likely suspects for delivering the viruses to Antarctica are Arctic tern and skua. +
+

+

+ + Avian Influenza in Poultry + +
+ Iraq (HPAI H5N1) +
+ Iraq’s Ministry of Agriculture Veterinary Department has reported that highly pathogenic H5N1 avian influenza virus has become endemic in the country. The virus has been characterized as belonging to clade 2.3.2.1c, which has also been found in adjacent countries including Bulgaria, Kurdistan and Pakistan. +

+

+ South Africa (LPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports a case of low pathogenic H5N2 avian influenza virus on an ostrich farm in Western Cape Province. A total of 4,198 birds are on the farm, and 2,799 birds have been infected. Control measures implemented include quarantine, movement control, screening, and prohibition of vaccine. The cause of this outbreak is unknown. +

+

+ Taiwan (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) reports a new case of highly pathogenic H5N2 avian influenza virus in Hsinchu County. A total of 114 birds died of the disease, and the remaining 394 were culled to prevent further spread. Additional control measures include: movement control; screening; disinfection; quarantine; stamping out; and zoning. The cause of this outbreak is unknown. +

+

+ USA (HPAI H5N2/H5N8) +
+ A new publication has been published in the journal Virology documenting the outbreak of highly pathogenic H5N2 and H5N8 avian influenza virus in the United States. This publication examines the adaptations made by the virus, and discusses the transmission rate among domestic and wild poultry. +

+

+ + Avian Influenza in Humans + +
+ China (H5N1 & H7N9) +
+ A study was conducted to understand the risks of H7N9 and H5N1 virus infections in Northern China by surveying poultry workers, swine workers, and the general population in Beijing, China. The study issued and evaluated three surveys in November 2013, April 2014, and April 2015. The surveys showed that in comparison to the general population, poultry workers were at higher risk of contracting both H7N9 and H5N1. The outcome of the study suggest that while risk of H7N9 and H5N1 infections are low in Beijing, continued preventative measures are still warranted for poultry workers, because exposure to live poultry is the most significant risk for infection. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_10_17.html b/data/flu-report-html/usgs_avian_flu_report_2016_10_17.html new file mode 100644 index 0000000..5c93dae --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_10_17.html @@ -0,0 +1,2079 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ Avian Influenza Archive from Oct 17, 2016 +

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+ News Update October 17, 2016 +

+
+

+ + Avian Influenza in Animals + +
+ HPAI H5N8 +
+ A recent study published in the journal Science, by an international consortium of scientists from every country affected by clade 2.3.4.4 highly pathogenic avian influenza virus,  investigates how migration patterns of wild birds can help scientists predict where outbreaks of avian influenza might occur. Researchers focused on the distribution of H5N8 in 2014 and 2015and tracked its spread from South Korea to Europe, Japan, and North America. Combining epidemiological data from each country with distribution of domestic poultry, short and long distance wild bird migration patterns, the consortium found that the long distance spread was associated with bird migration followed by local and regional spread by other mechanisms. +
+

+

+ + Avian Influenza in Poultry + +
+ China (HPAI H5N6) +
+ The Ministry of Agriculture has announced 2 new outbreaks of highly pathogenic H5N6 avian influenza virus in Gansu Province and Hubei Province. A total of 21,934 birds died of the disease, and the outbreaks have been controlled by culling and carcass disposal. The source of these outbreaks was not reported. +

+

+ Ghana (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports 2 new outbreaks of highly pathogenic H5N1 avian influenza virus among backyard flocks in the Greater Accra Region. A total of 444 birds died of the disease, and the remaining 277 were culled to prevent further spread. In addition to culling, control measures include: movement control; disinfection and disinfestation; quarantine; and stamping out. The source of these outbreaks is unknown. +

+

+ Indonesia (HPAI H5N1) +
+ Authorities in Indonesia have reported new cases of highly pathogenic H5N1 avian influenza virus in the provinces of North Sulawesi and Bangka-Belitung. The disease has infected and killed chickens, ducks, and in the case of an outbreak in Kalapa in Bangka-Belitung, even pigs. In all cases, the identification is based on initial testing using dip-stick style tests and samples have been sent to laboratories for H5N1 confirmation. Indonesia is attempting to prevent spread of the disease by culling and burning the carcasses. The cause of these outbreaks is unknown. +

+

+ Laos (HPAI H5N1) +
+ The Director General of the Department of Livestock and Fisheries reports a new case of highly pathogenic H5N1 avian influenza virus in Luang Prabang Province. A total of 47 birds died of the disease, and the remaining 103 were culled to prevent it spreading further. Additional control measures include: movement control; disinfection and disinfestation; dipping and spraying; quarantine; surveillance; and modified stamping out. The cause of this outbreak is unknown. Laotian officials consider this outbreak to be a new introduction, as the country was declared free of H5N1 in 2015. +

+

+ + Avian Influenza in Humans + +
+ Egypt (HPAI H5N1) +
+ The World Health Organization (WHO) reports 2 new human cases of highly pathogenic H5N1 avian influenza virus in Fayoum Governorate and Giza Governorate. The case in Fayoum is a 3-year-old boy who began displaying symptoms on May 7, and died on May 20. The case in Giza is a 3-year-old girl who began displaying symptoms on July 24, and died on July 31. Both cases had a history of contact with poultry. There have been 10 human cases of H5N1 avian influenza virus in Egypt so far this year, 4 of which have been fatal. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_10_21.html b/data/flu-report-html/usgs_avian_flu_report_2016_10_21.html new file mode 100644 index 0000000..8af247f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_10_21.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ +

+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Oct 21, 2016 +

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+ News Update October 21, 2016 +

+
+

+ + Avian Influenza in Animals + +
+ Germany (LPAI H7N3) +
+ The City Council of Mannheim reported a case of low pathogenic H7N3 avian influenza virus among pheasants at Luisen Park in that city. The Veterinary Office of the City of Mannheim confirmed that two pheasants that died in the park were infected with the virus. To prevent spread of the disease, and additional 6 pheasants, 26 ducks, and 2 peacocks that were in contact with the dead birds were culled, and other birds in the park are being tested. The cause of this outbreak is unknown. +
+

+

+ India (HPAI? H5N1) +
+ Officials at the National Zoological Park in Delhi reported an outbreak of possible highly pathogenic H5 avian influenza virus among the zoo’s waterbirds.  A total of nine birds have died including ducks, painted storks, and pelicans.  The details are poorly reported but two unspecified birds died on 10/14, 6 on 10/15 and a “waterbird” died on 10/17. From the samples tested, two birds (also unspecified) have tested positive for H5.  The zoo has been closed until further notice as of 10/18. A day after the closing, three additional birds, two pelicans and a “wild hen” were found dead at the zoo.  The new carcasses have been sent for post mortem examination and laboratory testing. The source of this outbreak is unknown. Prior to the closing, the zoo had 20 ducks and 40 pelicans. The same zoo was cloed in May when 46 spotted deer died of rabies. +
+ Two birds were found dead at Hauz Khas Deer Park in Delhi on 10/21. No laboratory results are available at the present time, but the park was also closed as a precaution. This is the second site in the capital to be shut. As many as 18 other wild birds have been found dead in locations around Delhi. Fifteen painted storks have died at Gwalior Zoo in Madhya Pradesh; 3 crows died in Sundar Nagar near the zoo and one bird was found dead in Tughlakabad in south Delhi. These carcasses and additional wild bird and poultry samples have been collected and submitted for testing. +

+

+ + Avian Influenza in Poultry + +
+ Laos (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports a case of highly pathogenic H5N1 avian influenza virus on a farm in LuangPrabang Province. A total of 47 chickens died of the disease, and the remaining 83 chickens and 20 ducks were culled to prevent further spread. Additional control measures include: quarantine; movement control; disinfection and disinfestation; surveillance; dipping and spraying; and modified stamping out. The cause of this outbreak is unknown. The outbreak is considered to be a new introduction, as Laos had declared itself free of HPAI H5N1 in 2015. +

+

+ Taiwan (HPAI H5N2) +
+ The World Organisation for Animal Health (OIE) has reported a case of highly pathogenic H5N2 avian influenza virus on a farm in Changhua County. A total of 5,192 native chickens died of the disease, and the remaining 23,008 were culled to prevent further spread. In addition to culling, control measures include surveillance, movement control, screening, disinfection and disinfestation, quarantine, stamping out, and zoning. The source of this outbreak is unknown. Since the outbreaks becan on 1/7/15, a total of 585 farms have been affected and 1.8 million birds culled. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_11_07.html b/data/flu-report-html/usgs_avian_flu_report_2016_11_07.html new file mode 100644 index 0000000..d374411 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_11_07.html @@ -0,0 +1,2091 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+
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+ National Wildlife Health Center +

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+ Avian Influenza Archive from Nov 07, 2016 +

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+ News Update November 7, 2016 +

+
+

+ + Avian Influenza in Animals + +

+

+ Hungary (HPAI H5N8) +
+ National authorities have reported two cases of highly pathogenic H5N8 avian influenza virus. In Csongrad County, the disease was detected in a dead wild mute swan found on 10/19/16. It is unknown how the bird contracted the virus, but it is thought that wild bird migration may play a factor in the spread. In Bekes County, 2,374 birds have died on a farm with 10,201 118-days old fattening turkeys. HPAI H5N8 has been confirmed in the dead birds and the remainder of the flock will be destroyed. Indirect contact with wild birds is believed to have led to the introduction. +
+

+

+ + Avian Influenza in Poultry + +

+

+ Bhutan (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports a case of highly pathogenic H5N1 avian influenza virus on farms and backyards in Alubari, Wangkha village in the Chukha District beginning on October 13, 2016. A total of 13 chickens died of the disease, and 61 were destroyed out of a susceptible population of 3,000. Additional control measures include: quarantine; movement control; disinfection and disinfestation; surveillance; dipping and spraying; and modified stamping out. The cause of this outbreak is unknown.  No further infection in flocks in close proximity was detected. The last time Bhutan had detected HPAI H5N1 was in November, 2015. +

+

+ India (HPAI H5N8) +
+ The World Organization for Animal Health (OIE) reports two case of the highly pathogenic H5N1 avian influenza virus in the District of Alappuzha, in the state of Kerala in southern India on October 27, 2016.  HPAI H5N8 infection in poultry in the panchayats of Ramankari and Thakazhy were reported to OIE on 11/4/16. But local media sources have reported that birds in additional panchayats in Alappuzha including Anari, Kainadi, Karuvatta, Mampuzhakkara, Neelamperoor, Pallippad and Pandi are also positive. Special Rapid Response Teams, deputed in Thakazhy, Cheruthana, and Muttom Grama panchayats, conducted surveys at the locations where ducks were affected by the disease. 1,167 ducks affected by the disease-causing virus were culled: six hundred ducks were culled at Muttom and 396 ducks at Thakazhy; 180 ducks infected by the virus were killed at Cheruthana. The culling operations could not be carried out at Kainadi in Neelamperoor. The non-affected ducks are under close observation. +

+

+ India (HPAI H5N8) +
+ The Animal Husbandry Department reports a case of highly pathogenic H5N8 avian influenza virus in Arpookkara panchayat, in the district of Kottayam, in the state of Kerala. Samples sent to the National Institute of High Security Animal Diseases all came back positive for the virus. This outbreak was not included in the OIE report of 11/4/16. A total of 3,125 birds have died in the district, and the remaining susceptible birds will be culled to prevent further spread. The cause of this outbreak is unknown. +

+

+ The National Zoological Park in the capital, New Delhi, is closed because of highly pathogenic H5N8 avian influenza virus. Nine birds died beginning on 10/14 and included 5 rosy pelicans, three ducks and one painted stork. Two birds have tested positive for H5N8.  Following the detection, additional birds including a grey partridge, a free-living rosy pelican, a munia have died. Three crows have died in the Delhi neighborhood of Sundar Nagar and have tested positive for H5N8. The Ghazipur murga mandi (chicken market) consistently tested negative. Local reports are confusing, but at least 80 wild birds have died around Delhi including in the Hauz Khas Deer Park and Shakti Sthal, where the memorial to Indira Gandhi is and at least 12 are said to have tested positive for H5N8. None of these have been reported to OIE. Officials have stated likely causes of this outbreak are domestic cross-infection, climatic conditions, and lack of cleanliness in the area. The National Zoological Park is undergoing an extensive cleaning and fumigation process, and will be closed for the next 3 months. +

+

+ In the province of Madhya Pradesh,18 birds, including 15 painted storks,  have died in the Gandhi Zoological Park over a three day period. Two of the 15 painted storks have tested positive for HPAI H5N8 as of 10/22/16. Two days later, the remaining six painted storks at the zoo had died. There has been no update as to the test results on the second set of birds at present. +

+

+ In the Punjab province, two ducks found dead at a reservoir in Rajpura have tested positive for H5N8. There is no further information on this case at the present time. How the H5N8 viruses in the various Indian outbreaks relate to each other and to other H5N8 viruses found elsewhere in the world is unknown at present. +

+

+ Indonesia (HPAI H5N1) +
+ The Department of Agriculture, Farm, and Ranch reports cases of highly pathogenic H5N1 avian influenza virus in Bangka Belitung province. The disease affected chickens, ducks, and pigs, and all susceptible animals were culled to prevent it spreading further. The cause of this outbreak was not reported. +

+

+ The Netherlands (LPAI H5) +
+ The Ministry of Economic Affairs reports a case of low pathogenic H5 avian influenza virus at a poultry farm in Deurne. The farm houses 11,000 turkey, 3,500 pheasants, and 2,000 ducks. According to European guidelines, a culling operation took place, conducted by the Dutch Foods and Goods Authority. In addition to culling, control measures include zoning, surveillance, and a ban on the transport of poultry and poultry by-products. The cause of this outbreak was not reported. The neuraminidase subtype was not determined at the time of the report to OIE. +

+

+ Nigeria (HPAI H5N1) +
+ The World Organisation for Animal Health (OIE) reports a case of highly pathogenic H5N1 avian influenza virus on a farm in State of Rivers that began on 10/28/16. A total of 50 birds died of the disease, and the remaining 1,950 were culled to prevent it spreading further. Additional control measures include: movement control; disinfection and disinfestation; quarantine; stamping out; and surveillance. The source of this outbreak is unknown, but poor biosecurity was observed at the affected farm. +

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+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_11_15.html b/data/flu-report-html/usgs_avian_flu_report_2016_11_15.html new file mode 100644 index 0000000..c97828d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_11_15.html @@ -0,0 +1,2144 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ News Update November 15, 2016 +

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+ Austria (HPAI H5N8) +
+
+
+ The National Reference Laboratory of the Agency for Health and Food Security (AGES) is investigating an outbreak of H5N8 in Lake Constance in the state (Bundesland) of Vorarlberg where four heron and one pochard had died. Since then, more than 100 dead water birds (especially herons) have been found around Lake Constance. Control measures are still being decided but may include setting up a protection zone around the shore of the lake, stabling domestic poultry, and increased hygiene measures. The cause of this outbreak is listed as unknown. +

+

+ + Croatia (HPAI H5N8) + +
+ The World Organization for Animal Health (OIE) reports a new outbreak of highly parthenogenic avian influenza H5N8 from swans found dead in the River Bidj near Cerje village in Vukovarsko-Srijemska county. Ten mute swans had died, but only two were available for laboratory testing. The Croatian Veterinary Institute took organ samples on October 31 and identified H5N8 through nucleotide sequencing. The cause of this outbreak is listed as unknown. +

+

+ + Denmark (HPAI H5N8) + +
+ The Danish Veterinary and Food Administration reported two outbreak of highly pathogenic avian influenza H5N8 in wild birds this week. The virus was confirmed in one tufted duck that died in Christiana on Nov 8 near Copenhagen and in 10 tufted ducks found dead in Stege on the Island of Moen on Nov 9. +

+

+ + Germany (HPAI H5N8) + +
+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in a wild bord mortality event on the Ploner See in Schleswig-Holstein. 58 tufted ducks, 1 common coot and 1 great black-backed gull have died and H5N8 confirmed in some of the samples. The mortality event began on Nov 7. Separately, a dead wild duck of unspecified identity found near Cospudener Lake, near Leipzig in the state of Saxony in the same week has tested positive for highly pathogenic avian influenza H5N8. +

+

+ + Netherlands (HPAI H5N8) + +
+ Dutch authorities have reported an outbreak of highly pathogenic avian influenza H5N8 in wild birds on a wetland near Monnickendam, in Noord-Holland province. Two great-crested grebes and three tufted ducks have died beginning on Nov 8 and H5N8 is confirmed. +

+

+ + Poland (HPAI H5N8) + +
+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in Lubczyna in the state of West Pomerania after five ducks and one seagull were found dead on Oct 28 in an area of the country which borders Germany. The cause of this outbreak is listed as unknown. +

+

+ + South Korea (HPAI H5N6) + +
+ The highly pathogenic avian influenza virus H5N6 has been detected in wild bird fecal samples collected on the shores of the Bonggang Stream, Cheonan City in South Chungcheong province. Sequencing of the virus has shown that it is similar to H5N6 previously isolated from a white heron in Hong Kong. This is the first time HPAI H5N6 has been found in South Korea,  previously the virus was only found in China, Vietnam and Laos. The virus has been isolated from wild birds, poultry, cats and pigs and is known to infect people and is associated with at least one death. +

+

+ + Switzerland (HPAI H5N8) + +
+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 where three tufted ducks were found dead on Nov 4 at the Swiss sided of Lake Constance, Kreuzlingen District. Control measures to be applied are surveillance within containment and/or protection zone, and zoning. The cause of this outbreak is unknown. The Federal Office for Food Safety and Veterinary Affairs (BLV) in Switzerland reported that highly pathogenic avian influenza H5N8 has been detected in wild birds (a heron dove? and an unidentified gull) that died at Lake Geneva near Lausanne. +

+

+ + Avian Influenza in Poultry + +
+ Austria (HPAI H5N8) +
+ Highly parthenogenic avian influenza H5N8 has been detected in samples from a farm in Bregebz, in the state of Vorarlberg. The farm had 1,150 free ranging turkeys, of which 70 died beginning on Nov 9.  A total of 4,000 birds on the farm and adjacent area will be culled. The farm is located near the area where wild birds have also tested positive for H5N8. +

+

+ + Germany (HPAI H5N8) + +
+ Highly parthenogenic avian influenza H5N8 has been found on a small farm with 45 hens and 13 ducks in Meskenhagen in the German state of Mecklenburg-Vorpommern.  Among the flock, 32 has died beginning on Nov 11 and H5N8 has been confirmed. No species breakdown among the dead birds is available at present. +

+

+ Highly parthenogenic avian influenza H5N8 has been found on a farm with 36,000 breeding chickens located in Twedt in the state of Schleswig-Holsten. 3,000 birds have died beginning on Nov 11 and H5N8 has been confirmed. In the same state, H5N8 was also detected on a small farm located in Lubeck, near Grumby. The farm had 18 turkeys, 25 geese and 67 ducks and all 18 turkeys has died beginning on Nov 9. +

+

+ + Hungary (HPAI H5N8) + +
+ The World Organization for Animal Health (OIE) reports a new outbreak of highly pathogenic avian influenza at a turkey farm in Tótkomlós in Bekes County. There were 10,201 birds susceptible, 3774 cases, 2374 deaths, and 7827 birds destroyed. The start date is listed as Nov 1. The source of the outbreak is listed as unknown, but is thought to have occurred from contact with wild birds. On Nov 14, the World Organization for Animal Health (OIE) reports four new outbreaks of highly pathogenic avian influenza in Hungary. All were in commercial farms and all four were in Bacs-Kiskun county. These farms began experiencing mortality between Nov 8 - 10. +

+

+ + India (HPAI H5N8) + +
+ A bird flu outbreak of highly pathogenic avian influenza H5N8 is reported in Alappuzha and Kottayam districts of India. Currently, there have been 1,80,000 ducks culled by Rapid Response Teams deployed by the Animal Husbandry Department in the affected areas out of an estimated 3,000,000 more to be culled. Farmers will be compensated for dead birds. The cause of this outbreak is unknown. +

+

+ A bird flu outbreak of highly pathogenic avian influenza H5N8 is reported at the Blue Bird Tourist Complex in the Sultanpur National Park in Hisar, Haryana state. The identity of the virus was originally reported as H5N8 on Nov 5, changed the World Organization for Animal Health (OIE). Fourteen birds are dead and tested positive for H5N8, after that the samples were sent to the National Institute of High Security Animal Diseases in Bhopal, where the results were confirmed. Once confirmed a mass culling of ducks, hens, cocks, and other birds with in one kilometre from the tourist complex took place and so far husbandry officials have culled 929 birds including 120 ducks, 598 hens/cocks, and other birds. In addition, the park has been closed as a control measure. The cause of the outbreak is unknown. +

+

+ The World Organization of Animal Health (OIE) an outbreak of highly pathogenic avian influenza H5N8 in Rajpurain in the northern Indian state of Punjab. Ten birds are dead, and 33 others destroyed. The outbreak is listed as beginning on Oct 23. Control measures applied include stamping out, quarantine, movement control, screening, disinfection, and dipping/spraying. The cause of this outbreak is unknown. +

+

+ Local media is reporting that highly pathogenic avian influenza H5N8 has been detected in Itagi villafe in the southern Indian state of Karnataka. Around a dozen chickens have died and H5N8 has been confirmed by the National Institute of High Security Animal Diseases in Bhopal. +

+

+ + Israel (HPAI H5N8) + +
+ 1,500 birds have died in a flock of 34,500 21-weeks-old heavy breeders at Kibbitz Heftzibah, in the Jezreel valley in the northern Israeli province of Hazafon. Only one of four pens were affected on the kibbitz, but in the affected pen, 1,500 birds out of 5,200 has died beginning on Nov 9. In the epidemiology note included in the report to the World Organization of Animal Health (OIE): “Israel is on the migration route of wild birds coming from Europe to Africa. The migration is ongoing and this virus strain probably arrived from Europe with migrating birds. The farm is located in an aquaculture area with multiple fish ponds, attracting migrating birds.” +

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+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_11_18.html b/data/flu-report-html/usgs_avian_flu_report_2016_11_18.html new file mode 100644 index 0000000..b114a68 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_11_18.html @@ -0,0 +1,2124 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
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+ National Wildlife Health Center +

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+ ...advancing wildlife and ecosystem health +

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+ Avian Influenza Archive from Nov 18, 2016 +

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+ News Update November 18, 2016 +

+
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+ + Avian Influenza in Animals + +

+

+ + Denmark (H5N8) + +

+

+ The World Organization for Animal Health (OIE) issued a report of highly pathogenic avian influenza H5N8 in  Denmark  The affected species included two gulls found dead in Kalvehave Harbor on November 10th; two tufted ducks found dead in a wetland area near the town of Bøjden on the Island Funen;  eight dead tufted ducks found in a gravel pit near the village of Darup;  a mute swan and a great black-backed gull that were found dead on the Island of Lindholm in southeast of Zealand; and two great black-backed gulls found dead in Høruphav harbor on the Island Als. The food authority in Fødevarestyrelsen is taking precautions. Bird breeders are required to keep animals indoors.  Source of the outbreak is unknown. +

+

+ + Germany (HPAI H5N8) + +

+

+ The Ministry of the Environment reports the first case of bird flu in the state of Hesse in a duck found dead at the Twistestausee. The Ministry of Environment is establishing a restricted area; within 3 kilometers of the site, poultry animals must be stabled, and all birds will be examined by veterinarians for signs of disease. +

+

+ + Japan (HPAI H5N6) + +

+

+ While conducting environmental sampling, Kagoshima University detected highly pathogenic avian influenza virus (H5N6 subtype) in Izumi.  The location is a main overwintering site for hooded cranes and other waterfowl and birds have tested positive for HPAI H5N8 in 2014 and for HPAI H5N1 in 2010-2011. in the Kagoshima Prefecture. On November 7, a dead whooper swan found in Hokkaido Shibetsu-gun, Nakashibetsu and on November 15th a captive black swan died in a zoo in Akita, Akita Prefecture. Both birds have tested positive for avian influenza and tests are being conducted to further characterize the virus. Authorities are increasing wild bird monitoring in a 10 km radius. +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports the identification of highly pathogenic avian influenza H5N8 in a herring gull found dead on Nov 9. The site is located adjacent to areas in Germany where H5N8 has also been detected. Control measures include control of wildlife reservoirs. No vaccinations or treatment of affected animals are in use at this time. +

+

+ + South Korea (HPAI H5N6) + +

+

+ The Ministry of Food, Agriculture and Rural Affairs reports that highly pathogenic avian influenza (H5N6) was found on October 31st in wild bird samples collected on the Mankyung River, near Iksan in North Jeolla province. This is the second time that HPAI H5N6 has been identified in wild birds in Korea this fall and preceeded detection of the same virus in poultry (see below) +

+

+ + Switzerland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports recurrences of highly pathogenic avian influenza virus (H5N8) as evidenced in 22 new outbreaks in Bern, Fribourg, Neuchatel, Schaffausen, Thurgau, Valais, and Vaud between November 5 and November 9. In Lake Constance, 12 tufted ducks, two unidentified ducks, and one great crested grebe were found dead. Five tufted ducks, 3 black-headed gulls, 1 red-crested pochard, and 1 common pochard were found dead in Lac Leman. In Lac de Neuchâtel two tufted ducks, two mute swans, two herring gulls, and one great crested grebe were found dead. An additional tufted duck and black-headed gull were found dead in Bielersee. Control measures in include surveillance within containment and/or protection zone and zoning. +

+

+ + Avian Influenza in Poultry + +

+

+ + Nigeria (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reports a reoccurrence of highly pathogenic avian influenza virus (H5N1) in samples from a poultry farm in Ikwere in Rivers State. On November 14th, the farm had 2,000 20-week-old layers, 196 of which died of avian influenza. The remaining 1,804 birds were culled. Control measures in place include movement control inside the country, disinfection/disinfestation, quarantine, stamping out, and surveillance within containment and/or protection zone. +

+

+ + South Korea (HPAI H5N6) + +

+

+ The Ministry of Food, Agriculture and Rural Affairs confirmed an outbreak of highly pathogenic avian influenza (H5N6) at a chicken farm in Haenam, South Jeolla Province and a duck farm in Eumseong District, North Chungcheong Province. Approximately 40,000 chickens and 22,000 ducks have been culled. Control measures include quarantine and prohibiting breeders from moving within a 3 km radius. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + +

+

+ The Centre for Health Protection (CHP) of the Department of Health (DH) reports two additional cases of avian influenza in humans (H7N9) in Huzhou in the province of Zhejiang and Suzhou and the province of Jiangsu. The case in Huzhou is a 77 year-old female farmer in serious condition. She purchased poultry from a live poultry market before experiencing symptoms. The second case is an 89 year-old man who is in serious condition. CHP is advising the public to avoid contact with live poultry, birds, and droppings. Since 2013, there have been 777 human cases of avian influenza A (H7N9) in mainland China. +

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+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_12_01.html b/data/flu-report-html/usgs_avian_flu_report_2016_12_01.html new file mode 100644 index 0000000..28052c9 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_12_01.html @@ -0,0 +1,2140 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Dec 01, 2016 +

+
+ + newer + +
+

+ News Update December 1, 2016 +

+
+

+ + Avian Influenza in Animals + +

+

+ + Croatia (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a recurrence of highly pathogenic avian influenza virus (H5N8) in Croatia.  Five mute swans were found dead on November 12, on the River Drava in Osijek-Baranja County in western Croatia.  This follows a report of ten mute swans found dead on the Bidj River, in the adjacent Vukovar-Srijem County, on October 30.  As a control measure, exhibitions, fairs, and sports competitions for poultry and birds have been prohibited throughout Croatia.  In addition, poultry owners throughout the country have been advised to keep their animals indoors, and owners within three kilometers of the locations where the infected wild birds were found are required to do so.  The cause of the outbreak is unknown.  Testing was conducted by the Poultry Centre of the Crotatian Veterinary Institute in Zagreb. +

+

+ + Denmark (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports three separate outbreaks of highly pathogenic avian influenza (H5N8) on the island of Zealand in Denmark.  On November 14th, three mute swans were found dead in the town Kalvehave, Vordingborg Municipality.  Also on that date, two tufted ducks were found dead near the town Faxe Ladeplads, Faxe Municipality.  The third outbreak occurred on November 19: it affected a mixed backyard poultry flock, and is described below, in the “Poultry” section.  This series of outbreaks is believed to have been caused by contact with wild species; control measures include movement control inside the country, traceability, stamping out, zoning, disinfection/disinfestation, official disposal of carcasses, by-products and waste, and surveillance within containment and/or protection zones.  Testing was conducted by the National Veterinary Institute in Kalvehave. +

+

+ + Japan (HPAI H5N6) + +

+

+ The World Organization for Animal Health (OIE) reports two cases of highly pathogenic avian influenza (H5N6) in Akita Prefecture in, northern Japan.  On November 15, a black swan was found dead at a zoo in Akita, Akita Prefecture; on November 17, a second black swan was found dead at the same zoo.  The first swan was reported in the previous issue of AI News (November 18), but the virus had not been characterized at that time.  Testing was conducted at the OIE Reference Laboratory at Hokkaido University, and the swans were confirmed positive for H5N6 on November 21.  The origin of the outbreak is unknown; screening was instituted as a control measure.  Because of this and other recent reports of HPAI H5 and H5N6 in Japan and South Korea, Japan has raised its Avian Flu Alert to Level 3. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports four separate outbreaks of highly pathogenic avian influenza (H5N8) in the Netherlands.  On November 11, ten wild birds were found dead in the village of Slootdorp, in North Holland Province in the northern Netherlands: species included the great black-backed gull, mew gull, black-headed gull, tufted duck, common shelduck, and common teal.  On November 14, four tufted ducks were found dead in the village of Werkendam, North Brabant Province, in the southern part of the country.  Also on that date, three unidentified ducks, geese, or swans (Anatidae) were found dead in the village of Oostzaan, North Holland Province, and one tufted duck was found dead in the village of Bergplas, South Holland Province (both provinces are in the midwestern part of the country).  In summary, HPAI H5N8 was confirmed in 18 wild birds (comprising at least six species of ducks and gulls), which were found dead in four different locations between November 11 and 14.  All testing was conducted by the Wageningen Bioveterinary Research in Lelystad, Flevoland Province.  The source of these outbreaks is unknown, and no control measures have been undertaken. +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports the identification of highly pathogenic avian influenza (H5N8) in five unidentified ducks, geese, or swans (Anatidae) found dead on November 18.  The animals were found in Goleniów County in northwestern Poland.  All testing was conducted by the National Veterinary Research Institute in Pulawy, Poland; control measures include control of wildlife reservoirs. +

+

+ + Avian Influenza in Poultry + +

+

+ + Denmark (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports three separate outbreaks of highly pathogenic avian influenza (H5N8) on the island of Zealand in Denmark.  Two of them occurred on November 14th, and involved wild birds; they are described in the “Animals” section above.  The third outbreak occurred on November 19, in Ålsgårde, Helsingør municipality: this outbreak affected a mixed backyard poultry flock, and is described below, in the Poultry section.(13 chickens, 35 ducks, 16 geese and 5 turkeys).  Of the 69 animals, 11 died of avian flu and the remaining 58 were destroyed on November 21.  This series of outbreaks is believed to have been caused by contact with wild species; control measures include movement control inside the country, traceability, stamping out, zoning, disinfection/disinfestation, official disposal of carcasses, by-products and waste, and surveillance within containment and/or protection zones.  Testing was conducted by the National Veterinary Institute in Kalvehave. +

+

+ + Germany (LPAI H5) + +

+

+ A strain of LPAI (H5) has been discovered at two goose farms in northern Germany (Schleswig-Holstein state).  All geese will be destroyed at both farms (1,800 at one and 7,000 at the second); culling began on Wednesday November 23.  Several countries are restricting imports of German poultry, and poultry farmers are being ordered to keep flocks indoors.  The source of the outbreak was not reported. +

+

+ + Iran (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza virus (H5N8) in Malard, Tehran Province, Iran.  Both outbreaks occurred on November 14, and they concerned two different farms.  The first farm had 50,621 commercial layers: 13,355 became sick, 4,455 died, and 46,166 were destroyed.  The second farm had 232,840 commercial layers: 47,510 became sick, 1,128 died, and 231,712 were destroyed.  Control measures in place include screening, disinfection/disinfestation, quarantine, stamping out, official disposal of carcasses, by-products and waste, surveillance within and outside containment and/or protection zone, control of wildlife reservoirs, and zoning.  The source of the outbreaks is unknown, but an investigation is ongoing.  Testing was conducted by the Laboratory of Tehran Province and the Central Veterinary Laboratory in Tehran. +

+

+ + Nigeria (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reports a recurrence of highly pathogenic avian influenza virus (H5N1) in samples from a poultry farm in Ikwerre, Rivers State, Nigeria. On November 24, the farm had 800 38-week-old layers, 54 of which died of avian influenza. The remaining 746 birds were culled. Control measures in place include movement control inside the country, disinfection/disinfestation, quarantine, stamping out, and surveillance within containment and/or protection zone.  The cause of the outbreak is unknown, but investigators noted poor biosecurity at the farm.  Testing was conducted by the National Veterinary Research Institute in Vom. +

+

+ + South Korea (HPAI H5N6) + +

+

+ Two outbreaks of highly pathogenic avian influenza (H5N6) are reported in South Korea.  On Saturday November 19, at a chicken farm in Yangju, Gyeonggi Province, 240 chickens died and tested positive for HPAI H5N6.  As a control measure, 15,000 chickens were culled at that farm, and travel has been restricted at 119 farms within a three-kilometer radius.  This outbreak was reported by provincial authorities.  On Tuesday November 22, the Ministry of Food, Agriculture and Rural Affairs confirmed an outbreak of HPAI H5N6 at two duck farms - one in Cheongju, North Chungcheong Province, and one in Muan, South Jeolla Province.  Approximately 8,500 ducks have been slaughtered in Cheongju, and 22,000 have been culled in Muan.  Movements of animals, people and vehicles at the farms have been restricted, and the Ministry will continue to conduct quarantines and surveillance on poultry.  The source of both outbreaks is unknown. +

+

+ + Avian Influenza in Humans + +

+

+ + China (HPAI H5N6) + +

+

+ The Hunan Provincial Disease Control Center reports that a 47-year-old farmer from Shaoyang City (Hunan Province, central China) has died after contracting H5N6 avian flu.  The woman (surname Luo) was admitted to a local hospital on Friday November 18, and died the following Sunday.  The Provincial Disease Control Center reports that her health was already critical when she was admitted. +

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_12_06.html b/data/flu-report-html/usgs_avian_flu_report_2016_12_06.html new file mode 100644 index 0000000..02e91b8 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_12_06.html @@ -0,0 +1,2215 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from Dec 06, 2016 +

+
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+ News Update December 6, 2016 +

+
+

+ + Avian Influenza in Animals + +

+

+ + Egypt (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in Dumyat, Damietta Governorate, in northeastern Egypt. This is the first record of this strain in Egypt.  Two common coots were found dead during routine surveillance; the source of the outbreak is unknown.  Control measures include disinfection/disinfestation and surveillance within and outside the containment and/or protection zone.  Vaccination is permitted (if a vaccine exists).  Testing was conducted by the Animal Health research Institute in Cairo. +

+

+ + Finland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 on the island of Vårdö in southwestern Finland. This is the first record of this strain in Finland.  On November 12, approximately 60 tufted ducks were found dead in different places in the Åland archipelago. Four birds have been submitted for testing, and two birds have tested positive for HPAI H5N8.  Control measures include movement control inside the country, screening, and surveillance within containment and/or protection zones.  Vaccination is prohibited.  Testing was conducted by the Finnish Food Safety Authority (Evira) in Helsinki. +

+

+ + France (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in Marck, in the Pas-de-Calais department of northern France. This is the first record of this strain in France.  On November 17, 25 wild ducks (gadwalls, Anas strepera and Eusasian widgeons, Anas penelope) were found dead: they were part of a flock of 75 which was kept on a private body of water and used as call-ducks by hunters.  On November 26, H5N8 was confirmed in samples taken from the dead ducks.  A group of 35 ducks remained on the body of water after the mortality event; they were slaughtered on November 28.  The outbreak was caused by contact with wild species, and control measures include screening, disinfection/disinfestation, stamping out, and official disposal of carcasses, by-products and waste.  Vaccination is prohibited and affected animals are not being treated.  Testing was conducted by the ANSES Reference National Laboratory in Maisons-Alfort. +

+

+ + Germany (HPAI H5N8, LPAI H5) + +

+

+ The World Organization for Animal Health (OIE) reports that a gull was found dead in Potsdam-Mittelmark, Brandenburg State, northwestern Germany, on November 25.  In addition, the Senate Department for Consumer Protection reports that as of November 25, at least six swans and seagulls found dead in the Berlin area have tested positive for avian influenza (some of which have been confirmed infected with the H5N8 strain).  There is debate about the source of the Berlin outbreak: some believe the virus was transmitted in food provided recreationally by humans, while others attribute it to contact with other wild birds.  Poultry stabling is required in the affected area, and dogs and cats must be kept on leashes. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports four outbreaks of HPAI H5N8 in locations around the Netherlands since November 14.  Two of the cases involved one or a few birds found dead; notable exceptions include Kampen, Overijssel, where 11 wild waterfowl were found dead on November 17; and Monnickendam, North Holland, where 15 gulls were found dead on November 17. +

+

+ + Romania (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports that highly pathogenic avian influenza H5N8 has been detected in Romania for the first time.  On November 23, a mute swan was found dead in Constanta harbor, on the Black Sea in southeastern Romania.  On November 24, the Institute for Diagnosis and Animal Health (Bucharest) confirmed that H5N8 was present in samples from the swan.  Control measures are in place, and include movement control inside the country, zoning, screening, official disposal of carcasses, by-products and waste, and control of wildlife reservoirs. +

+

+ + Sweden (HPAI H5N8) + +

+

+ The Swedish Board of Agriculture reported on November 23 that H5N8 has been found in a wild bird from Skåne, in southern Sweden.  This is the first detection of H5N8 in the country. +

+

+ + Avian Influenza in Poultry + +

+

+ + Ghana (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza H5N1 in the Greater Accra region of southern Ghana.  The outbreaks occurred on October 24 and 26.  Both cases involved flocks of several hundred layers kept in deep litter; approximately 50% of the birds died, and the rest were destroyed.  This is the final report of this disease in Ghana, indicating that authorities believe there will be no more outbreaks for the foreseeable future. +

+

+ + Germany (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports four outbreaks of highly pathogenic avian influenza H5N8 in Germany, on November 22, 24, 27, and 28.  The outbreaks occurred in central Germany in the town of Kronberg im Taunus, and in northern Germany in Ueckermünde, Neukloster, and Hamburg.  The reports involve three zoos and two farms, and in all but one case, three or fewer animals were suspected of having AI.  The exception was the outbreak on November 28, which involved a backyard flock of mixed poultry in Neukloster: of 329 hens, geese, and ducks, 124 died and 205 were destroyed. +

+

+ Low-pathogenic avian influenza H5 has been detected at a turkey farm in Lower Saxony, northern Germany; 16,000 turkeys will be culled, according to a report dated November 23. +

+

+ + India (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in Igati Village, Karnataka State, southwestern India.  The outbreak occurred on November 5, and involved a flock of 1593 birds (species was not provided).  900 birds died and 693 were destroyed.  Control measures are in place, and include movement control inside the country, disinfection/disinfestation, screening, quarantine, stamping out, and dipping/spraying. +

+

+ + Italy (LPAI H5) + +

+

+ On November 23, low-pathogenic avian influenza H5 was detected on a duck farm in Milan province, northern Italy. +

+

+ + Iraq (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N1 in the district of Amirabad, Tehran.  On November 22, a flock of 26,873 commercial layers was affected by H5N8: 13,436 became sick, 1,401 dies, and 25,472 were destroyed.  In addition, 155,000 birds from nearby, unaffected farms were slaughtered to prevent further spread: these birds were tested and confirmed negative for HPAI.  Control measures in place include screening, disinfection/disinfestation, quarantine, stamping out, official disposal of carcasses, by-products and waste, surveillance within and outside of containment and/or protection zone, control of wildlife reservoirs, and zoning. +

+

+ + Japan (HPAI H5N8) + +

+

+ Three new outbreaks of highly pathogenic H5N8 avian influenza have been reported in Japan.  On November 28, 130 chickens died on a farm in Sekikawa, Niigata Prefecture, on the eastern coast of Honshu; the remaining 310,000 chickens on the farm have been culled, and H5N8 AI has been confirmed in samples from the dead birds.  Also on November 28, 10 ducks were found dead on a farm in Aomori, Aomori Prefacture, in northern Honshu.  The remaining 16,500 ducks have been culled, and H5N8 avian influenza was confirmed present.  On November 30, 100 chickens were found dead on a farm in Joetsu, Niigata Prefecture; the remaining 230,000 were culled without waiting for confirmation of AI.  H5N8 has been confirmed. AI is suspected due to recent confirmed outbreaks in nearby areas.  Control measures include movement control inside the country, screening, disinfection/disinfestation, quarantine, and stamping out. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ Four outbreaks of H5N8 have been reported in The Netherlands.  On November 11, HPAI was detected in two dead birds from a hobby flock of black swans in Den Oever, North Holland.  The remainder of the flock was culled, and in total 34 black swans and a wild duck died or were destroyed.  This incident has not triggered any control measures beyond the culling.  During the period of November 26 to December 1, three duck farms in Biddinghuizen, Flevoland Province experienced HPAI H5N8 mortality events.  All susceptible birds at those farms have been culled; in addition, the ducks kept at several farms owned by the same company as one of the affected farms have been culled as a precautionary measure.  Farms near the affected farms have been screened and found negative for AI.  Additional control measures include movement control inside the country, screening, disinfection/disinfestation, stamping out, control of wildlife reservoirs, and zoning. +

+

+ + Nigeria (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza H5N1 in two adjacent states in northern Nigeria.  On November 21, 274 chickens were found dead and 240 were destroyed at a farm in Toro, Bauchi State.  On November 23, 33 birds were found dead and 398 were destroyed in a flock of mixed chickens, ducks, and guinea fowl, in Kumbotso, Kano State.  Control measures include movement control inside the country, disinfection/disinfestation, quarantine, surveillance outside containment and/or protection zone, stamping out, and official destruction of animal products. +

+

+ + Russia (HPAI H5) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza in Russia.  Both occurred on November 7, in Yashaltinsky district, Kalmykia province, southwestern Russia.  In both cases, flocks of mixed backyard birds were involved; 95 of 122 birds died at one location, and 137 of 203 birds at the other.  While the neuraminidase subtype has yet to be determined, the H5 hemagglutinin gene was shown to belong to clade 2.3.4.4, which is the same as other H5N8 viruses currently circulating in Europe and elsewhere. Control measures are in place, and include movement control inside the country, disinfection/disinfestation, screening, quarantine, stamping out, official disposal of carcasses, by-products and waste, and control of wildlife reservoirs. +

+

+ + South Africa (LPAI H5N2) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of low pathogenic avian influenza H5N2 in the Western Cape Province on the southern coast of South Africa.  The outbreaks occurred in October, and the OIE was informed on November 25.  On October 13, 228 ostriches (of a flock of 490) were found sick on a farm in Hessequa.  On October 20, 1769 ostriches were found sick (of a flock of 2948), on a farm in Oudtshoorn.  No birds died and none were destroyed at either farm.  Control measures include movement control inside the country, screening, and quarantine. +

+

+ + South Korea (HPAI H5N6) + +

+

+ The World Organization for Animal Health (OIE) reports 14 outbreaks of highly pathogenic avian influenza H5N6 in South Korea.  The outbreaks occurred between November 16 and November 21, and affected ducks and laying hens at commercial farms.  Some of the outbreaks included reports of neurologic symptoms, torticollis, and ataxia.  The apparent mortality rate was between 1.5 and 3%, and all susceptible animals at all affected farms have been destroyed.  Other control measures include movement control inside the country, screening, disinfection / disinfestation, traceability, quarantine, surveillance outside containment and/or protection zone, stamping out, official destruction of animal products, official disposal of carcasses, by-products and waste, surveillance within containment and/or protection zone, control of wildlife reservoirs, and zoning. +

+

+ + Sweden (HPAI H5N8) + +

+

+ Highly pathogenic avian influenza (H5N8) was detected at a chicken farm in Mörarp, in Skåne County, southern Sweden, on November 24.  On November 25, 200,000 chickens were slaughtered to prevent the spread of the disease, and the farm was disinfected. +

+

+ + Avian Influenza in Humans + +

+

+ + Hong Kong (HPAI H5N6) + +

+

+ The Hong Kong Centre for Health Protection (CHP) reports two cases of HPAI in humans in mainland China.  The first report is dated November 28: on November 18, a 47-year-old female patient from Wugang in Hunan province developed symptoms and was hospitalized in critical condition and has since died on November 20.  No information is available about her occupation or suspected source of infection.  The second report is dated December 1: a 30-year-old female farmer from Liuzhou in Guangxi province is in serious condition, after developing symptoms on November 8 and being hospitalized on November 18.  She had had contact with dead poultry before developing symptoms. +

+
+

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+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_12_13.html b/data/flu-report-html/usgs_avian_flu_report_2016_12_13.html new file mode 100644 index 0000000..15b04de --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_12_13.html @@ -0,0 +1,2207 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 13, 2016 +

+
+ + newer + +
+

+ News Update December 13, 2016 +

+
+

+ + Avian Influenza in Animals + +

+

+ + Austria (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) has reported additional cases of highly pathogenic H5N8 avian influenza virus in the state of Vorarlberg. A total of 19 wild birds were found dead; the diagnosis was confirmed after testing by the Austrian Agency for Health and Food Safety. Zoning has been put into place, and the source of the outbreak has been confirmed as contact with wild species. +

+

+ + Denmark (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports cases of highly pathogenic H5N8 avian influenza virus among wild birds. A total of 22 birds of various species were found dead in 17 separate events distributed across the eastern (Zealand, n = 13) and western (South Denmark, n = 4) areas of the country. Control measures include movement control, disinfection and disinfestation, traceability, stamping out, surveillance, zoning, and official disposal of carcasses, by-products, and waste. The source of this outbreak has been reported as contact with wild species. +

+

+ + Finland (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports new cases of highly pathogenic H5N8 avian influenza virus in the Åland islands and the southwestern archipelago. A total of 9 peacocks in a zoo died of the disease, and the remaining 28 birds in the group were culled to prevent further spread. Wild tufted ducks were also found to have died of the disease in the southwestern archipelago. In addition to culling, other control measures implemented include: movement control; screening; traceability; stamping out; surveillance; disinfection and disinfestation; and official disposal of carcasses, by-products, and waste. The source of this outbreak is unknown. +

+

+ + France (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) has reported a new case of highly pathogenic H5N8 avian influenza virus in the department of Haute-Savoie. A wild gull was found dead at Evian on  November 25, and the disease was confirmed after testing by the National Reference Laboratory. Farms in the area will be contained, have extra biosecurity enforced, and will undergo a veterinary check-up. Additional control measures include screening, disinfection and disinfestation, stamping out, and official disposal of carcasses, by-products, and waste. The source of this outbreak has been stated as contact with wild species. +

+

+ + Germany (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports additional cases of highly pathogenic H5N8 avian influenza virus in the states of Bavaria, Mecklenburg-Vorpommern, Lower Saxony, Saxony, North Rhine-Westphalia, Sachsen-Anhalt, and Schleswig-Holstein. A total of 60 wild coots, ducks, geese, grebes, gulls, swans, and birds of prey tested positive for the disease after being found dead. Control measures include: movement control; screening; disinfection and disinfestation; traceability; quarantine; surveillance; stamping out; zoning; control of wildlife reservoirs; and official disposal and destruction of animal carcasses, products, by-products, and waste. The source of these outbreaks is unknown. +

+

+ + Hong Kong (HPAI H5N6) + +

+

+ The Agriculture, Fisheries, and Conservation Department (AFCD) reports that a total of 4 fecal samples have tested positive for highly pathogenic H5N6 avian influenza virus at the Mai Po Nature Reserve. The samples were collected at a “gei wai”, a traditional shrimp cultivation system over a span of five days. The initial set of three samples were identified as being from northern pintails. This is the first detection of HPAI H5N6 in Hong Kong since last February. Cleaning and disinfection have taken place, and the AFCD warns people to maintain good personal hygiene and avoid contact with wild birds. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza (H5N8) in Noord-Holland province: one in De Waal, where 5 Eurasian wigeons were found dead; the second in Durgerdam, where 1 Eurasian buzzard was found dead.  Vaccination is prohibited in the Netherlands as a matter of policy. The cause of this outbreak is unknown. +

+

+ + Romania (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports that highly pathogenic avian influenza H5N8 has been detected for the first time in Romania.  On November 23, a great cormorant was found dead in Constanta harbor, on the Black Sea in southeastern Romania.  This is the same day that a mute swan was found dead 300 m away; the swan also tested positive for H5N8, but the OIE is treating these two occurrences as separate outbreaks.  Control measures are in place, and include movement control inside the country, zoning, screening, official disposal of carcasses, by-products and waste, and control of wildlife reservoirs. This same region has had a history of HPAI H5N1 infection. +

+

+ + Serbia (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports the first ever outbreak of highly pathogenic avian H5N8 in Serbia. Six mute swans were found dead in a natural park near Kovilj, in the Vojvodina province of northern Serbia. Control measures include surveillance within containment and/or protection zones, control of wildlife reservoirs, and zoning. Vaccination is prohibited. The cause of this outbreak is unknown. +

+

+ + Switzerland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports two outbreaks of highly pathogenic avian influenza (H5N8) in Switzerland.  The first was in Lake Biel, near Täuffelen, canton of Bern (northwestern Switzerland), where a mute swan was found dead on November 28.  The second was on December 12, in Lake Lucerne near Stansstad, canton of Nidwalden (central Switzerland) where a tufted duck was found dead. Control measures include surveillance within the containment and/or protection and zoning. Vaccination is prohibited. The cause of this outbreak is unknown. +

+

+ + Tunisia (HPAI H5) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5 in Ichkeul Natural Park, near Bizerte Governorate in northern Tunisia. On November 24, 17 common coots and 13 Eurasian wigeons were found dead.  On November 30, the laboratory of the Veterinary Research Institute in Tunis confirmed the presence of H5 virus in the samples taken on the animals. Control measures include movement control of wildlife reservoirs and surveillance within and outside of containment and/or protection zones. Vaccination is prohibited.  The cause of this outbreak is unknown at this time, but is thought to have been carried over by migrating birds because Tunis is a main migratory corridor for wild birds. +

+

+ + Avian Influenza in Poultry + +

+

+ + France (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports 8 outbreaks of highly pathogenic avian influenza H5N8 in southern France, in the towns of Almayrac, Monlezun, Lacapelle-Segalar, Beaumont sur l'Osse, Monbahus, Ibos, and Eauze.  The outbreaks occurred on November 25 (1), December 1 (6), and December 2 (1), and all involved duck farms (except for one unspecified poultry farm).  All ducks on the affected farms were destroyed, and a 3-km protection zone and a 10-km surveillance zone have been implemented around the affected farms.  Other control measures include screening, disinfection/disinfestation, and traceability.  The outbreak was caused by contact with wild species. +

+

+ + Hungary (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a reocurrence of highly pathogenic avian influenza H5N8 in poultry in Hungary. New outbreaks were found in 24 sites in two provinces (Bacs-Kiskun n =21, and Jasz-Nagykun-Szolnok, n=3), and includes both commerical farms and backyard flocks. In total, 10,050 birds were killed; an additional 38,230 were destroyed. The source of the outbreak is inconclusive and control measures include movement control inside the country, disinfection/disinfestation, traceability, stamping out, official disposal of carcasses, by-products and waste, surveillance within containment and/or protection zone, zoning, and vaccination is prohibited. +

+

+ + Iran (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports outbreaks of a new strain of highly pathogenic avian influenza that killed 1,148 commercial layers at 2 poultry farms in Tehran. An additional 248,834 birds were destroyed. These outbreaks were detected during ongoing avian influenza surveillance in the region. The outbreak was confirmed through laboratory testing and necropsy. Control measures include ongoing surveillance, screening, disinfection/disinfestation, quarantine, stamping out, official disposal of carcasses, by-products and waste, surveillance within containment and/or protection zone, control of wildlife reservoirs, and zoning. Vaccination is prohibited and there is no treatment of affected animals. 523,000 birds in a 3km radius of the farms with negative test results were slaughtered as a preventative measure. Surveillance will begin outside the containment and protection zones. +

+

+ + Israel (HPAI H5N8) + +

+

+ Outbreaks of highly pathogenic avian influenza H5N8 were discovered by the Agriculture and Rural Development Ministry at poultry farms in Be’er Tuvia, En Zurim, and Kibbutz Revadim. All three outbreaks are in Ashkelon district in northern Israel. Two farms raised turkeys and the third raised “heavy” breeders. The Ministry is working to eradicate the virus from each site. Officials are monitoring the area. Samples from chicken coops in a 10km radius of the farms have been collected for testing and officials encourage breeders in the region to keep flocks inside. +

+

+ + Japan (HPAI H5N8) + +

+

+ The government of the Prefecture of Aomori has confirmed a second outbreak of highly pathogenic avian influenza at a duck farm in the city of Aomori.  The new farm is located only 350 meters apart from the index farm and both are run by the same company; the first experienced mortality on November 28 (reported in the previous AI news), and the second on December 2.  All 4,800 ducks have been culled at the second farm. +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic avian influenza H5N8 in Deszczno, Lubuskie Province in western Poland.  The outbreak occurred on December 1, when about 700 geese were found dead on a farm.  The number of cases rose to 1,201 by the end of the outbreak, and the remaining 638 geese were destroyed.  In addition, a 3-km protection zone and a 10-km surveillance zone were implemented around the affected farms.  Other control measures include screening, disinfection/disinfestation, traceability, stamping out, and official destruction of animal products, carcasses, by-products and waste.  This is the first time that the province of Lubuskie is affected, Poland had previously detected the HPAI H5N9 virus in wild birds in West Pomerania province in November.  The outbreak was caused by contact with wild species. +

+

+ + Russia (HPAI H5) + +

+

+ Three outbreaks of HPAI H5 are reported in western Russia: two outbreaks occurred on November 23, in backyard poultry flocks in the Republic of Kalmykia; the third occurred on December 8 at a commercial poultry farm in the adjacent Astrakhan Oblast.  The poultry farm "Harabalinskom" has 10 layer sheds and 4 breeder sheds. 5,100 birds have died in Unit 7 that has 54,360 layers in total. Unspecified control and preventative measures are being taken. +

+

+ + South Korea (HPAI H5N6) + +

+

+ The South Korean Ministry of Agriculture, Food, and Rural Affairs reports that as of December 8, highly pathogenic avian influenza has been found at nearly 100 farms in the country, and about 5.8 million birds have been culled at 161 farms (some of which were unaffected by AI but culled preventatively).  The OIE issued a new report on December 2, detailing 6 new outbreaks that occurred on poultry farms on November 21 and 22.  Control measures are in place, and include movement control inside the country, screening, disinfection / disinfestation, traceability, quarantine, surveillance outside containment and/or protection zone, stamping out, official destruction of animal products, official disposal of carcasses, by-products and waste, surveillance within containment and/or protection zone, control of wildlife reservoirs, and zoning. +

+

+ + Avian Influenza in Humans + +

+

+ There are no human cases of Avian Influenza to report this week. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_12_20.html b/data/flu-report-html/usgs_avian_flu_report_2016_12_20.html new file mode 100644 index 0000000..1e49789 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_12_20.html @@ -0,0 +1,2196 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 20, 2016 +

+
+ + newer + +
+

+ News Update December 20, 2016 +

+
+

+ + Avian Influenza in Animals + +

+

+ + Finland (HPAI H5N6) + +

+

+ The World Organisation for Animal Health (OIE) reports cases of highly pathogenic H5N6 avian influenza virus among wild birds in the regions of Lounais-Suomi and Ahvenanmaam Maakunta. Both are located in the southern archepeligo and islands of Finland. Species affected include 3 tufted ducks and 2 white-tailed eagles. Control measures include movement control inside the country and screening. Vaccination is prohibited and no affected animals were treated. The source of the outbreak is unknown. +

+

+ + Germany (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports 21 outbreaks of highly pathogenic avian influenza H5N8 throughout Germany. Affected species include 30 wild ducks, 6 wild swans, 4 wild geese, 4 birds of prey, and 2 gulls. Control measures include movement control inside the country; screening; disinfection/disinfestation; traceability; quarantine; surveillance outside containment/protection zones; stamping out; official destruction of animal products; official disposal of carcasses, by-products, and/or protection zone; control of wildlife reservoirs; and zoning. Vaccination is prohibited and affected animals are not being treated. The source of the outbreak is unknown. +

+

+ + Japan (HPAI H5N6) + +

+

+ The Ministry of the Environment reports a total of 64 cases of highly pathogenic avian influenza H5N6 in 11 prefectures across the country. The virus has been found in wild bird carcasses and droppings as well as birds in captivity. Birds at Akita Omoriyama Zoo in northeastern Japan and Higashiyama Zoo in the city of Nagoya in central Japan have tested positive for the virus.  The Ministry is calling on local officials to increase surveillance and communication efforts. +

+

+ + Romania (HPAI H5N8) + +

+

+ The World Organization for Animal Health reports a case of highly pathogenic H5N8 in Constanta. Three dead mute swans found in the Constanta harbor zone were tested positive for the disease by the Institute of Diagnostic and Animal Health. Control measures implemented include: movement control; screening; zoning; control of wildlife reservoirs; and official disposal of carcasses, by-products, and waste. The source of this outbreak is reported as contact with wild species. +

+

+ + Sweden (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports additional cases of highly pathogenic H5N8 avian influenza virus in two European herring gulls found dead in the locality of Degerhamn in Sweden. The carcasses were found as part of routine surveillance of avian influenza and testing at the National Veterinary Institute confirmed presence of the virus. Control measures include surveillance inside and outside the containment/protection zone. Vaccination is prohibited and no affected animals have been treated. The cause of the outbreak is unknown. +

+

+ + Switzerland (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports a recurrence of highly pathogenic H5N8 avian influenza virus in Switzerland. On December 5, 1 mute swan was found dead in Lac Léman and on December 12, 1 tufted duck was found dead in Lake Constance. Necropsy and laboratory testing was completed by the Swiss Federal Veterinary Office.  Control measures include zoning and surveillance within the containment/protection zone. Vaccination is prohibited and no affected animals were treated. The cause of the outbreak is unknown. +

+

+ + Avian Influenza in Poultry + +

+

+ + France (LPAI H5N1) + +

+

+ The World Organisation for Animal Health (OIE) reports an outbreak of low-pathogenic H5N1 avian influenza virus in Pallanne, Gers Department, in southern France.  This outbreak was detected during surveillance of a protection zone established after an earlier H5N8 outbreak: H5N1 was found on a duck farm, and 1,000 ducks were destroyed as a precaution.  This is the first detection of the low pathogenic H5N1 strain this season in France. A 1km regulated zone was established around the outbreak; other control measures include screening, disinfection/disinfestation, traceability, and stamping out.  Vaccination is permitted (if a vaccine exists), and there has been no treatment of affected animals. +

+

+ + France (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports 7 new poultry-farm outbreaks of highly pathogenic H5N8 avian influenza in France (bringing the total number of such outbreaks this season up to 18).  The outbreaks occurred between December 7 and 10, in the Departments of Gers, Lot-et-Garonne, Pyrénées-Atlantiques, and Aveyron, in southern France.  Five of the outbreaks occurred on commercial duck and chicken farms, and were discovered by investigating epidemiological links and/or sampling within the protection zones of previous outbreaks.  One additional commercial farm was tested following clinical suspicion, and the outbreak in Aveyron involved mortality in a backyard flock.  In all cases, all animals in the affected flocks have been destroyed.  A 3 km surveillance zone and a 1km protection zone have been established around the outbreaks; other control measures include screening, disinfection/disinfestation, traceability, surveillance within and outside containment and/or protection zone, zoning, and stamping out.  Vaccination is prohibited, and there has been no treatment of affected animals. +

+

+ + Hungary (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports 32 new poultry-farm outbreaks of highly pathogenic H5N8 avian influenza in Hungary.  The outbreaks occurred between November 25 and December 6, in the counties of Bács-Kiskun, Csongrád, and Békés in southern Hungary.  Turkeys, chickens, geese, and ducks were involved; one of the outbreaks occurred in a backyard flock and the rest were commercial farms.  The report does not provide information about the number of cases, deaths, or destroyed animals, and the laboratory tests used to confirm the presence of H5N8 are not reported.  Control measures include movement control inside the country, disinfection/disinfestation, traceability, surveillance within containment and/or protection zone, zoning, official disposal of carcasses, by-products and waste, and stamping out.  Vaccination is prohibited, and there has been no treatment of affected animals. +

+

+ + Macao SAR (LPAI H7N9) + +

+

+ On December 14, H7N9 avian influenza was detected in samples from a shipment of live chickens at a wholesale chicken market in Macao; 10,000 birds (including chickens and pigeons) were culled to prevent the spread of the virus.  The market was closed for three days as a precautionary measure, and the site has been disinfected.  Two people had contacts with the infected birds (see the next section for further details). +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza in Poland.  On December 12, 275 birds (species was not given) died at a farm in the village of Glinik, Lubuskie Province, western Poland.  The remaining 37,123 susceptible birds at that farm have been destroyed.  Control measures include screening, disinfection/disinfestation, traceability, surveillance within and outside containment and/or protection zone, zoning, official disposal of animal products, carcasses, by-products and waste, and stamping out.  Vaccination is prohibited, and there has been no treatment of affected animals.  The outbreak is believed to have been spread via fomites. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ An outbreak of highly pathogenic H5N8 avian influenza virus has occurred at a poultry farm in the village of Abbega. Over 1,000 chickens have died of the disease, and the rest of the 63,000 birds will be culled. Additional control measures include zoning, surveillance, and a transport ban. The source of this outbreak was not reported. +

+

+ + Nigeria (Suspected HPAI H5N1) + +

+

+ The Ministry of Agriculture and Natural Resources has reported a case of avian influenza (suspected highly pathogenic H5N1) on a poultry farm in Kano state. All the birds on the farm were culled to prevent further spread of the disease. In addition to culling, disinfection of the farm will take place, as will surveillance of other farms in the area. The source of this outbreak was not reported. +

+

+ + Russia (HPAI H5) + +

+

+ The World Organisation for Animal Health reports a case of highly pathogenic H5 avian influenza virus at a farm in Astrakhan (Astrakhanskaya Oblast). A total of 7,136 birds have died of the disease so far, and 99,345 of the 335,125 birds have been culled so far to prevent further spread. Additional control measures include movement control, screening, quarantine, stamping out, control of wildlife reservoirs, and official disposal of carcasses, by-products, and waste. The source of this outbreak is unknown. +

+

+ + South Korea (HPAI H5N6) + +

+

+ The Minister of Agriculture, Food and Rural Affairs reports 4 new suspected cases of highly pathogenic H5N6 avian influenza virus in the provinces of Chungcheong North and South, and North Jeolla. A total of 177 farms have been affected in the last month, and over 9 million birds have been slaughtered. The source of this outbreak was not reported. +

+

+ + Taiwan (HPAI H5N8) + +

+

+ The World Organisation for Animal Health reports a new case of highly pathogenic H5N8 avian influenza in a abattoir in Taichung City. A total of 750 chicken carcasses exhibited suspicious signs, and tested positive for the disease by the Animal Health Research Institute. The farm of origin is being tested for avian influenza, and other measures include: movement control; screening; disinfection and disinfestation; quarantine; stamping out; and zoning. The source of this outbreak is unknown. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + +

+

+ Eleven human cases of avian influenza have been reported in the provinces of Guangdong, Fujian, and Jiangsu. On December 9, Guangdong Provincial Health and Family Planning Commission reported a new human case of highly pathogenic avian influenza H7N9 in an 81-year-old male patient in the city of Meizhou. The man has recovered and was discharged from the hospital. On December 13, the Centre for Health Protection reported five new patients in critical condition: a 59-year-old man from the town of Fuzhou in Fujian; a male farmer from Kunshan in Jiangsu, a 63-year-old man from Nantong in Jiangsu, a 32-year-old man from Kunshan in Jiangsu, and a 64-year-old man from Suzhou in Jiangsu. 4 of these cases originated from exposure in poultry markets. Control measures include health surveillance measures at all boundary control points, including body temperature checks. Travelers from affected areas are advised to wear masks and seek immediate treatment if symptoms present. +

+

+ + Macao SAR (LPAI H7N9) + +

+

+ On December 14, the Macao SAR Government Health Bureau reported a human case of highly pathogenic avian influenza H7N9 in a 58-year-old poultry trader at a wholesale market stall selling silky fowl, where specimens tested positive for the virus. The patient was hospitalized and placed in isolation but is not showing symptoms of the virus. The trader’s wife is also under quarantine but she has tested negative for the virus. Officials shut down the market and destroyed over 10,000 live birds. Other control measures include review of 3 additional markets and cleaning and disinfection work. Officials are also monitoring a van driver who had contact with the infected birds. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2016_12_29.html b/data/flu-report-html/usgs_avian_flu_report_2016_12_29.html new file mode 100644 index 0000000..c2ece8f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2016_12_29.html @@ -0,0 +1,2997 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Dec 29, 2016 +

+
+ + newer + +
+

+ News Update December 29, 2016 +

+
+

+ Avian Influenza in Animals +

+

+

+

+ + Global (HPAI H5N8) + +

+

+ Since the last report, highly-pathogenic H5N8 avian influenza has been detected in wild birds in 7 countries across Europe, and also in South Korea.  In Europe, 22 outbreaks occurred between November 23 and December 23, in southwestern Finland, the Netherlands, Scotland and Wales, Switzerland, southwestern France, and Romania and Montenegro; species involved include raptors (1 white-tailed sea eagle, 2 peregrine falcons), corvids (1 magpie, 1 unspecified corvid), and anatids (1 whooper swan, 2 greylag geese, 1 black-headed gull, and many ducks - up to 60 in a single morality event).  The South Korean outbreak occurred in Gyeonggi Province, in northern South Korea, where H5N8 was detected in wild bird droppings collected on November 23. +

+

+

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in wild birds between December 16 and 22, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + Finland + +

+
+

+ Town of Rauma (southwestern) +

+
+

+ December 20 +

+
+

+ 1 white-tailed sea eagle +

+
+

+ First case of H5N8 on mainland +

+
+

+ http://bit.ly/2hqKlJS +

+
+

+ + France + +

+
+

+ Tarn department (southwest) +

+
+

+ December 11 +

+
+

+ 1 magpie +

+
+

+ Area has been disinfected +

+
+

+ http://bit.ly/2huzzEj +

+
+

+ + Montenegro + +

+
+

+ Lake Skadar (eastern) +

+
+

+ December 20 +

+
+

+ 1 duck +

+
+

+ First case of AI in Montenegro +

+
+

+ http://reut.rs/2i4vpSy +

+
+

+ + Netherlands + +

+
+

+ Throughout +

+
+

+ December 2 - 20 +

+
+

+ 1 corvid, 108+ ducks, 1 peregrine falcon +

+
+

+ 14 outbreaks total +

+
+

+ http://bit.ly/2hlo0ub +

+

+ http://bit.ly/2hqL0ek +

+
+

+ + Romania + +

+
+

+ Constanza Harbor +

+
+

+ November 23 +

+
+

+ 1 whooper swan +

+
+

+

+
+

+ http://bit.ly/2hunaAj +

+

+

+
+

+ Teleorman County (southern) +

+
+

+ December 8 +

+
+

+ 2 greylag geese +

+
+

+ Spread to new area +

+
+

+ http://bit.ly/2hlo0ub +

+
+

+ + South Korea + +

+
+

+ Gyeonggi Province (northern) +

+
+

+ November 23 +

+
+

+ Wild bird feces +

+
+

+ First H5N8 this winter in Korea +

+
+

+ http://bit.ly/2ioquJN +

+
+

+ + Switzerland + +

+
+

+ Zurich +

+
+

+ December 19 +

+
+

+ 1 black-headed gull +

+
+

+

+
+

+ http://bit.ly/2huqqLW +

+
+

+ + UK + +

+
+

+ Carmarthenshire, southern Wales +

+
+

+ Reported on December 22 +

+
+

+ 1 Eurasian widgeon +

+
+

+ First wild bird detection in UK +

+
+

+ http://bbc.in/2hlvUDL +

+
+

+ Southern Scotland +

+
+

+ Reported on December 23 +

+
+

+ 1 peregrine falcon +

+
+

+

+
+

+ http://bbc.in/2hlt5Ti +

+
+

+

+

+

+

+ + South Korea (HPAI H5N6) + +

+

+ A wild swan found dead on December 11 has tested positive for highly-pathogenic H5N6 avian influenza.  The swan was fond in the city of Gyeongsan, in southeastern South Korea.  Poultry movement has been restricted within 10 km of the location where the swan was found, and officials are optimistic that the strain will not spread in this region. +

+

+

+

+ + South Korea (H5, suspect HPAI H5N6) + +

+

+ On December 19, the zoo in Seoul Grand Park reported that 2 storks and 5 of 8 endangered Mandarin ducks that were in the same enclosure have died from H5 infections.  Eight remaining ducks in the enclosure have been culled as a preventative measure, and other birds at the zoo are being screened for the infection. +

+

+

+

+ + Bulgaria and Ukraine (HPAI H5, suspect H5N8) + +

+

+ On December 16, 10 mute swans were found dead in Kherson Oblast, southern Ukraine, and on December 21, 2 grey herons were found dead at a natural park in Yambol Province, southeastern Bulgaria.  Samples from both incidents have tested positive for HPAI H5 avian influenza. +

+

+

+

+ + USA (LPAI H7N2) + +

+

+ On December 15, officials announced that low-pathogenic H7N2 avian influenza has infected at least 45 cats at an animal shelter in Manhattan, New York.  One older cat with other health problems has died; all other cats have only mild respiratory symptoms and are being kept in a quarantine area.  The virus has not been found in any of the shelter’s dogs, and testing is ongoing for other animal species housed there. +

+

+

+

+

+

+ Avian Influenza in Poultry +

+

+

+

+ + Global (HPAI H5N8) + +

+

+ Since the last report, highly-pathogenic H5N8 avian influenza has been detected in poultry in 10 countries globally.  In Europe, 35 outbreaks occurred between December 7 and 20 in southern France, northern Germany, southern Hungary, northern Netherlands, eastern and western Poland, northern Serbia, and in England; species involved include ducks, chickens, turkeys, and guineafowl, and outbreaks occurred on commercial farms and in backyard flocks.  In Africa, an outbreak was reported in a flock of mixed guinea fowl, turkeys, and pigeons in Kano State, northern Nigeria on December 19.  In Asia, South Korea and Taiwan reported 5 outbreaks between November 27 and December 9; the outbreaks all occurred among chickens, at farms and in slaughterhouses. +

+

+

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in poultry between December 16 and 22, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + France + +

+
+

+ Gers Department (southern) +

+
+

+ December 13 and 20 +

+
+

+ Ducks, chickens, guineafowl +

+
+

+ 4 outbreaks on poultry farms +

+
+

+ http://bit.ly/2ioDO0L +

+

+ http://bit.ly/2huF6Le +

+
+

+ + Germany + +

+
+

+ Lower Saxony (northern) +

+
+

+ December 14 +

+
+

+ Turkeys +

+
+

+ 1 outbreak on a poultry farm +

+
+

+ http://bit.ly/2iBUL7x +

+
+

+ + Hungary + +

+
+

+ Békés, Bács-Kiskun, and Csongrad Counties (southern) +

+
+

+ December 7, 8, 9 +

+
+

+ Geese, ducks, and unspecified birds +

+
+

+ 22 outbreaks on poultry farms; 2 outbreaks in backyard flocks +

+
+

+ http://bit.ly/2ibTBAC +

+
+

+ + Netherlands + +

+
+

+ Friesland Province (northern) +

+
+

+ December 18 +

+
+

+ Ducks and chickens +

+
+

+ 2 outbreaks on poultry farms +

+
+

+ http://bit.ly/2hHTDCy +

+
+

+ + Nigeria + +

+
+

+ Kano State (northern) +

+
+

+ November 19 +

+
+

+ Guineafowl, turkeys, pigeons +

+
+

+ 1 outbreak +

+
+

+ http://bit.ly/2hlJfvW +

+
+

+ + Poland + +

+
+

+ Podkarpackie Province (eastern) and Lubuskie Province (western) +

+
+

+ December 13, 16 and 17 +

+
+

+ Unspecified birds +

+
+

+ 3 outbreaks on poultry farms +

+
+

+ http://bit.ly/2hLuKSZ http://bit.ly/2huBEQx +

+
+

+ + Serbia + +

+
+

+ South Ba?ka District (northern) +

+
+

+ December 10 +

+
+

+ Unspecified birds +

+
+

+ 2 outbreaks in backyard flocks +

+
+

+ http://bit.ly/2hqZ7Aq +

+
+

+ + South Korea + +

+
+

+ Gyeonggi Province (northern) +

+
+

+ Reported on December 18 +

+
+

+ Chickens +

+
+

+ 1 outbreak on a poultry farm +

+
+

+ http://bit.ly/2ioHEai +

+
+

+ + Taiwan + +

+
+

+ Throughout +

+
+

+ November 27 – December 9 +

+
+

+ Chickens +

+
+

+ 4 outbreaks in slaughterhouses +

+
+

+ http://bit.ly/2hr4Arf +

+
+

+ + UK + +

+
+

+ Lincolnshire county, eastern England +

+
+

+ December 11 +

+
+

+ Turkeys +

+
+

+ 1 outbreak at a poultry farm +

+
+

+ http://bit.ly/2ioIcNC +

+
+

+

+

+

+

+ + Japan and South Korea (HPAI H5N6) + +

+

+ Highly pathogenic H5N6 avian influenza has been detected in poultry in Japan and South Korea.  On December 16, 30 chickens were found dead at a farm in Shizuoka Prefecture, central Japan.  Testing confirmed the presence of HPAI H5N6, and the remaining 210,000 chickens were culled the next day.  In South Korea, H5N6 has been detected in the province of South Jeolla for the first time; two outbreaks on commercial duck farms were reported on December 17.  Adjacent North Jeolla Province has had 14 outbreaks of H5N6 to date, and the disease appears to be spreading rapidly. +

+

+

+

+ + Bulgaria, Russia, Ukraine (HPAI H5, suspect H5N8) + +

+

+ Highly pathogenic H5 avian influenza has been detected in poultry in Bulgaria, Russia, and Ukraine.  In Bulgaria, 7 outbreaks occurred between December 19 and 22; all occurred in the western half of the country.  Of the 7, 5 were in backyard flocks, 1 was at a commercial farm, and 1 was in a flock of captive mallards at a natural park.  Authorities believe the strain involved was H5N8, but were unable to confirm the identification at the current time.  The outbreak in Russia occurred in Krasnodar Krai, in the western part of the country, on December 8; a flock of backyard birds was affected.  Finally, on December 16, two outbreaks occurred among backyard flocks in Kherson Oblast, southern Ukraine. +

+

+

+

+ + France (LPAI H5N1) + +

+

+ The World Organisation for Animal Health (OIE) reports two new outbreaks of low-pathogenic H5N1 avian influenza.  The outbreaks took place on December 13 and 15 in the Hautes-Pyrénées department in southwestern France. Both outbreaks involved unspecified birds on farms, and all susceptible birds were destroyed by December 20.  Control measures include screening, disinfection/disinfestation, traceability, and stamping out.  The outbreak is epidemiologically linked to an earlier outbreak in Eugénie-les-Bains, in the nearby department of Landes. +

+

+

+

+ + France (LPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of low-pathogenic H5N8 avian influenza.  The outbreak occurred on December 18, at a duck farm in the Landes Department in southern France.  The disease was detected during routine sampling within a protection zone: no animals were clinically affected, but all 1700 susceptible ducks were slaughtered as a precaution.  Control measures include screening, disinfection/disinfestation, and traceability; in addition, a 1-km protection zone has bene established around the outbreak location. +

+

+

+

+ + France (LPAI H5N9) + +

+

+ The World Organisation for Animal Health (OIE) reports two new outbreaks of low-pathogenic H5N9 avian influenza.  The outbreaks occurred on December 8 and 12 at commercial duck farms in the Gers Department of southern France.  The disease was detected because the ducks were required to be tested upon leaving an established protected area; none of the animals showed clinical signs. +

+

+

+

+ + Israel (AI) + +

+

+ An unspecified strain of avian influenza was detected on December 15 among poultry (chickens and/or turkeys) in the city of Bet Shemesh, near Jerusalem in Israel.  The affected animals have been destroyed. There has been no independent confirmation of this story. +

+

+

+

+

+

+ Avian Influenza in Humans +

+

+

+

+ + Hong Kong ex China (LPAI H7N9) + +

+

+ The Centre for Health Protection confirms the first human contraction of avian influenza in Hong Kong this season. The patient, a 75-year-old man, visited Changping, in Guangdong province, China between November 28 to December 9. He experienced chest discomfort on December 8 and visited a hospital in Changping. He returned to Hong Kong on December 9 and was hospitalized from the point of entry directly to a hospital. Initial tests on that day was negative for influenza but positive for enterovirus and rhinovirus. After a he developed a fever on December 17, tests confirmed a diagnosis of low pathogenic H7N9 avian influenza virus from samples taken on December 19. The patient was in serious condition, and has since died. While in China he had visited a wet market in Changpin and bought a dressed chicken. +

+

+

+

+ + China (LPAI H7N9) + +

+

+ Authorities report 7 cases of low pathogenic H7N9 avian influenza virus across the country. 2 people have died from the disease, and the remaining patients include a 44-year-old man from Fujian Province, a 45-year-old man from Jiangsu Province, and a person from Anhui Province. +

+

+

+

+ + USA (LPAI H7N2) + +

+

+ The Department of Health reports that a veterinarian has contracted low pathogenic H7N2 avian influenza virus in New York City. The patient experienced only a mild illness, and has recovered. The disease was contracted from close contact with H7N2-infected cats in New York animal shelters. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_01_10.html b/data/flu-report-html/usgs_avian_flu_report_2017_01_10.html new file mode 100644 index 0000000..4ef4031 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_01_10.html @@ -0,0 +1,2230 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 10, 2017 +

+
+ + newer + +
+

+ News Update January 10, 2017 +

+
+

+ Avian Influenza in Animals +

+

+ + Greece (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports that highly pathogenic avian influenza (H5N8) was found in a wild swan found in the Evros river delta in Eastern Macedonia and Thrace. +

+

+ + Ireland (HPAI H5N8) + +

+

+ A new case of highly pathogenic avian influenza (H5N8) was discovered in a wild duck in the town of Wexford in Ireland. The bird was found alive but unable to fly. Control measures include mandatory housing of poultry. The public was advised to report multiple wild bird deaths in the same location. Further testing will determine whether the virus found in Ireland is the same strain that has been found in Great Britain and Europe. +

+

+ + Japan (HPAI H5N6) + +

+

+ The Kyoto Municipal Government reports that highly pathogenic avian influenza (H5N6) was found in seven wild swans. Eight mute swans at the Kyoto Racecourse in the Fushimi Ward died suddenly. Genetic testing confirmed that seven of the eight birds were infected with H5N6. The remaining 38 swans on the premises were culled. As of December 27, a total of 117 wild birds in 15 prefectures have tested positive for HPAI H5N6. +

+

+ + Korea (HPAI H5N6) + +

+

+ A provincial government official reports that highly pathogenic avian influenza (H5N6) was found in two dead cats in the city of Pocheon in South Korea 2 kilometers from a chicken farm. A domestic cat mated with a stray female; both parents and three of the kittens have died, and H5N6 was detected in the male and one of the kittens. The government has “sterilized” farms and ponds within 10 km of where the cats died. Twelve people who had contact with the two positive cats have been placed on antivirals. Two dogs raised together with the cats have tested negative. The government will test stray cats in heavily affected districts elsewhere in the country to determine the extent of their exposure to H5N6. +

+

+ + Sweden (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports that highly pathogenic avian influenza (H5N8) was found in three wild birds in Sweden. 1 hooded crow was found dead in the province of Gotland, 1 Eurasian sparrowhawk was found dead in the city of Norrköping, and 1 tufted duck was found on the island of Utö. The birds were sent to the National Veterinary Institute where PCR testing confirmed the presence of the virus. The source of the outbreak is unknown. Control measures include surveillance inside and outside the containment zone and vaccination is prohibited. +

+

+ + UK (HPAI H5N8) + +

+

+ On January 4, highly pathogenic avian influenza (H5N8) was found in 3 wild ducks, 1 wild gull, and 1 wild cormorant found dead in the county of Merseyside in the UK. The same strain was found in a backyard flock of chickens and ducks in Pontyberem in South Wales. Control measures include 3km protection and 10km surveillance zones. +

+

+ + USA (LPAI H7N2) + +

+

+ On December 27, an outbreak of low pathogenic avian influenza sickened a total of 125 shelter cats in New York City. 91 cats in Manhattan, 30 cats in Brooklyn, and 4 in Staten Island tested positive for the virus. Adoptions were suspended until the authorities could control the outbreak. The infected cats have been quarantined and the facilities have been disinfected. 350 people have been screened for the virus. No other species at the shelters have been affected. +

+

+ Avian Influenza in Poultry +

+

+ + Bulgaria (HPAI H5) + +

+

+ The World Organization for Animal Health (OIE) reports an ongoing occurrence of highly pathogenic avian influenza in poultry farms in the Provdiv province of Bulgaria. 4,344 birds were affected on a farm in the village of Skutare, 456 birds died and the remaining 3,886 were culled. According to the Agriculture Ministry, the ongoing outbreak affects at least 26 poultry farms. Control measures include a nation-wide prohibition on hunting wild birds and a mandatory cull of over 110,000 affected birds as well as a continued ban on poultry markets and fishing in areas inhabited by wild migratory birds. An additional 15,000 birds will be culled from poultry farms in the area of Stara Zagora in Bulgaria. Control measures will also be imposed on poultry farms in the area of Plovdiv. +

+

+ + Chile (LPAI) + +

+

+ On January 5, the Agriculture and Livestock Service reports an outbreak of avian influenza at a turkey production plant in the Valparaiso region of Chile. Testing is underway to determine the strain of the virus, but the strain is said to be of the low pathogenic type. The affected birds will be culled and a quarantine will be imposed in the area. +

+

+ + China (HPAI H5N6) + +

+

+ The Ministry of Agriculture reports an outbreak of highly pathogenic avian influenza (H5N6) in a poultry farm has been reported in the city of Yining in the Xinjiang region of China. 10,716 out of 16,000 birds has died of the infection, and officials have culled 55,000 chickens and other poultry in the vicinity. An additional 13,000 cases of H5N6 were found on a poultry farm in Deyang in the Sichuan province. 11,000 birds died and the remaining 38,000 were culled. Testing by the Harbin National Avian Influenza Laboratory was positive for H5N6. Control measures include screening, disinfection, quarantine, surveillance outside the containment zone, stamping out, and official destruction of animal products, official disposal of carcasses, by-products, and waste. Animals are not being treated and vaccination is prohibited. The source of the outbreak is inconclusive. +

+

+ + India (HPAI H5N1) + +

+

+ Highly pathogenic avian influenza H5N1 has been detected in two places in India.  First, On December 26, officials informed the public that H5N1 avian influenza had been found in Keranga Village, Odisha State in eastern India.  The outbreak was detected after an unusual chicken mortality event.  Preventative measures include closing poultry and egg markets in the area, movement restrictions, and a 10-km protection and surveillance zone around the location of the morality event.  In addition, poultry-culling is taking place on nearby farms. The second outbreak occurred on January 3, when officials confirmed that H5N1 was present in samples taken following a mortality event among turkeys at an animal rescue facility in Ahmedabad, Gujarat State, western India.  As a precautionary measure, other birds at the rescue facility and backyard poultry housed near the facility will be culled; movement of animals, droppings, and farm equipment is also restricted.  This is the first outbreak of H5N1 in Gujarat since 2006. +

+

+ + Indonesia (HPAI H5N1) + +

+

+ In a mortality event that started on December 19, over 100 ducks have now died in the village of Basarang, in the province of Central Kalimantan on the Indonesian part of the island of Borneo.  Highly pathogenic H5N1 avian influenza has been confirmed as the cause of death.  A source reported that the duck carcasses have been dumped in a river or partially buried. +

+

+ + Iran (HPAI H5N8) + +

+

+ An outbreak of highly pathogenic H5N8 avian influenza occurred at a farm in Quazvin Province, central Iran; 63,000 chickens and 800,000 fertilized eggs and day-old chicks have been culled to prevent its spread.  In addition, over 1,000 wild birds have been found dead of undetermined causes at Mighan wetland, about 250 km south of the farm.  Hunting licenses have been suspended as a precaution.  These events were reported on December 26. +

+

+ + Japan (HPAI H5N6) + +

+

+ An outbreak of highly pathogenic H5N6 avian influenza has occurred in Kumamoto Prefecture, on the island of Kyushu (the southernmost in the main Japanese archipelago).  On December 19, 50 chickens were found dead at the farm; the remaining 93,000 birds were culled over the next two days.  Officials have inspected all poultry farms in Kunamoto Prefecture and found no other signs of avian influenza. +

+

+ + Nigeria (HPAI) + +

+

+ Kano State, northern Nigeria, continues to be affected by avian influenza.  A recent report described culling 9,000 birds at two affected poultry farms (depopulating both farms).  Further details about the outbreaks themselves were not provided.  Surveillance and disinfection is being conducted at nearby farms, and an educational campaign is underway to help farmers prevent further spread of the disease. These outbreaks have not been reported to the World Organization for Animal Health (OIE). +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports four new outbreaks of highly pathogenic H5N8 avian influenza in Poland, and Flutrackers.com reports three additional outbreaks. The outbreaks took place between December 21 and 28.  Five of them involved commercial poultry farms in Gorzów County, Lubuskie Province (western Poland); the remaining two outbreaks occurred in a flock of backyard poultry in Malopolska Province, southeastern Poland, and in a flock of 70 ducks and chickens in Swietokrzyskie province, south-central Poland.  All susceptible birds were destroyed at farms involved in the OIE-reported outbreaks; Flutrackers.com did not supply that information for the outbreaks they reported.  Other control measures in place include screening, disinfection/disinfestation, traceability, surveillance within and outside containment and/or protection zone, stamping out, official destruction of animal products, carcasses, by-products and waste, and zoning. +

+

+ + Russia (HPAI) + +

+

+ On December 30, the Russian agriculture safety watchdog Rosselkhoznadzor reported two new outbreaks of unspecified avian influenza in Russia.  One occurred in the Krasnodar Krai in southwestern Russia; geese were affected.  The other occurred among turkeys in Yaroslavl Oblast, western Russia. These outbreaks have not been reported to the World Organization for Animal Health (OIE). +

+

+ + Slovakia (HPAI H5) + +

+

+ An outbreak of highly pathogenic H5 avian influenza has been reported in Bratisava, western Slovakia.  A backyard flock of hens was affected; all but one of the 65 birds was killed by the disease, and the surviving bird has been destroyed. +

+

+ + Taiwan (HPAI H5N2, H5N8) + +

+

+ Two new outbreaks of avian influenza have been reported in Taiwan.  On December 27, 12 chickens were found dead with AI symptoms, at a slaughterhouse in New Taipei City, northern Taiwan; the remaining 336 chickens in the batch were destroyed, and the slaughterhouse and the source farm have been disinfected.  Testing revealed the presence of H5N8 and H5N2 AI.  On January 5, it was reported that 23,000 chickens were destroyed on a farm in Yunlin County after an inspection found H5N8 avian influenza in samples from the farm. +

+

+ + UK (HPAI H5N8) + +

+

+ A report dated January 3 describes an outbreak of highly pathogenic H5N8 avian influenza in a backyard flock of ducks and chickens in Carmarthenshire County, Wales.  As reported previously, H5N8 was detected in December in a dead wild duck in this county.  To prevent further spread of the disease, a 3-km protection zone and 10-km surveillance zone were established around the site; in addition, poultry keepers are required to keep their animals indoors or otherwise ensure their separation from wild birds.  The protection zone will stay in place until February 28. +

+

+ Avian Influenza in Humans +

+

+ + China (LPAI H7N9) + +

+

+ Five new human cases of H7N9 avian influenza are reported from mainland China; four patients are being treated, and one has died.  On December 22, a 45-year-old patient from Nantong City, Jiangsu Province was reported to have been diagnosed with the disease.  On December 25, a 49-year-old male chicken trader from Qiannan prefecture developed symptoms (cough, sputum, fever and other upper respiratory symptoms); the diagnosis of H7N9 was confirmed on December 31, and he is now being treated at Qiannan Chinese Medicine Hospital.  On December 31, a 34-year-old man named Liu from Sichuan Province was diagnosed; he is currently being treated in a Shanghai hospital.  On December 31, samples from a 53-year-old man named Wang from Jingdezhen City confirmed his diagnosis; he is in critical condition at a hospital in Nanchang.  Finally, a 77-year-old man from Rizhao, Shandong Province was diagnosed and passed away on January 3.  A news release dated January 2 reported that H7N9 has infected at least 19 people and killed at least three in China so far this winter. On January 9, the National Health and Family Planning Commission in China reported to Hong Kong's Centre for Health Protection (CHP) of the Department of Health 83 additional cases of H7N9 including 25 deaths (30% fatality rate) for the month of December. "The 54 male and 29 female patients aged from 23 to 91 from Jiangsu (52 cases), Zhejiang (21 cases), Anhui (nine cases) and Fujian (one case) had their onset from November 22 to December 29, 2016. Among them, 58 reported exposure to poultry or poultry market while the source of infection of 17 cases was under investigation." +

+

+ + Hong Kong (LPAI H7N9) + +

+

+ In Hong Kong, a 75-year-old man died from H7N9 avian influenza on December 25.  On December 26, a 70-year-old man with an underlying illness developed symptoms of avian influenza (fever, cough with sputum, shortness of breath, vomiting and diarrhea); he tested positive for H7N9 on December 28 and is now in stable condition at Princess Margaret Hospital in Hong Kong.  Both men had traveled to Guangdong Province, mainland China, and had contact with poultry shortly before becoming ill. +

+

+ + USA (LPAI H7N2) + +

+

+ A news report dated December 27 reported that a veterinarian has tested positive for H7N2 avian influenza.  The veterinarian had mild flu symptoms and has completely recovered.  The virus was likely acquired through contact with cats at a New York animal shelter, where an outbreak of H7N2 was detected in November. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_01_13.html b/data/flu-report-html/usgs_avian_flu_report_2017_01_13.html new file mode 100644 index 0000000..041cc45 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_01_13.html @@ -0,0 +1,2815 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 13, 2017 +

+
+ + newer + +
+

+ News Update January 13, 2017 +

+
+

+ + OIE Press Release: New AI Web Portal + +

+

+ The World Organization for Animal Health has launched a + + new avian influenza web portal + + to share information about this disease. +

+

+ + Avian Influenza in Wild Animals + +

+

+ + Global (H5N8) + +

+

+ The Food and Agriculture Organization of the United Nations warns of a potential highly pathogenic avian influenza (H5N8) virus pandemic in Africa, Asia, Europe, and the Middle East. The virus has been found in domestic and wild birds, but to date there are no known human cases. The FAO recommends increased surveillance and raising awareness in affected countries and those at risk. At this time, there is no justification for preemptive culling of wild birds or habitat destruction. +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in wild birds between January 6 and January 12, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + Finland + +

+
+

+ Southwestern Finland +

+
+

+ December 23 and 29 +

+
+

+ 1 white-tailed sea eagle, 1 tufted duck +

+
+

+ 2 outbreaks +

+
+

+ http://bit.ly/2jcahdI +

+
+

+ + Germany + +

+
+

+ Throughout +

+
+

+ December 21 through January 9 +

+
+

+ 7 ducks, 1 grebe, 2 gulls, 5 geese, 4 swans, 2 raptors, 1 heron +

+
+

+ 17 outbreaks +

+
+

+ http://bit.ly/2iM35BS +

+
+

+ + Italy + +

+
+

+ Town of Grado +

+
+

+ January 3 +

+
+

+ 1 Eurasian wigeon +

+
+

+

+
+

+ http://bit.ly/2jAVHJL +

+
+

+ + Romania + +

+
+

+ Fortuna lake +

+
+

+ December 28 +

+
+

+ 3 whooper swans +

+
+

+

+
+

+ http://bit.ly/2jo9dRL +

+
+

+ City of Iasi +

+
+

+ December 30 +

+
+

+ 1 mute swan +

+
+

+

+
+

+ http://bit.ly/2jogb9p +

+
+

+ + Serbia + +

+
+

+ Northern Serbia +

+
+

+ December 16 and January 9 +

+
+

+ 3 mute swans +

+
+

+ 3 outbreaks +

+
+

+ http://bit.ly/2j5nOBL +

+
+

+ + Slovenia + +

+
+

+ City of Maribor +

+
+

+ January 8 +

+
+

+ 1 swan +

+
+

+ Second occurrence in the area +

+
+

+ http://bit.ly/2iPAdZu +

+
+

+ + Spain + +

+
+

+ City of Palencia +

+
+

+ January 3 +

+
+

+ 1 greylag goose +

+
+

+

+
+

+ http://bit.ly/2iPnl5I +

+
+

+ + Sweden + +

+
+

+ Kalmar County, southern Sweden +

+
+

+ December 1 and 11 +

+
+

+ 2 white-tailed eagles +

+
+

+ 2 new outbreaks +

+
+

+ http://bit.ly/2iPuxyW +

+
+

+ + United Kingdom + +

+
+

+ Dorset +

+
+

+ Reported January 9 +

+
+

+ 9 mute swans +

+
+

+

+
+

+ http://bbc.in/2jrXa62 +

+
+

+

+
+

+ North Wales +

+
+

+ Reported January 9 +

+
+

+ 1 teal +

+
+

+

+
+

+ http://bit.ly/2jvjtea +

+
+

+ + USA (HPAI H5N2) + +

+

+ The World Organisation for Animal Health (OIE) reports that samples from a wild mallard harvested on December 27 in Fergus County, Montana, USA has tested positive for highly pathogenic H5N2 avian influenza virus.  The sample was tested as part of a routine avian influenza surveillance program.  The virus appears to be the same strain that was detected in the United States in 2014 and 2015.  No control measures are in place at this time. +

+

+ Avian Influenza in Poultry +

+

+ + Global (H5N8) + +

+

+ The World Organisation for Animal Health (OIE) and other news organizations report 45 new poultry outbreaks of highly pathogenic H5N8 avian influenza reported between January 6 and 12.  All outbreaks reported in this timeframe occurred in Europe and the Middle East. +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in poultry between January 6 and January 12, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + France + +

+
+

+ Gers, Landes, and Deux-Sèvres departments (southern, western) +

+
+

+ December 22 to 31 +

+
+

+ Ducks, chickens, and turkeys +

+
+

+ 20 outbreaks +

+
+

+ http://bit.ly/2ioKNFS +

+
+

+ + Germany + +

+
+

+ Lower Saxony and Saxony-Anhalt states (northwestern, central) +

+
+

+ December 13 to January 5 +

+
+

+ Turkeys and chickens +

+
+

+ 7 outbreaks +

+
+

+ http://bit.ly/2iM35BS +

+

+ http://reut.rs/2jgGTDb +

+
+

+ + Iran + +

+
+

+ Northwestern +

+
+

+ December 18 to 25 +

+
+

+ Backyard poultry, commercial layers +

+
+

+ 5 outbreaks: 1 farm and 4 backyard +

+
+

+ http://bit.ly/2jNsyze +

+
+

+ + Poland + +

+
+

+ Southwestern +

+
+

+ December 28 to January 6 +

+
+

+ Unspecified +

+
+

+ 12 outbreaks: 6 on farms, 6 backyard +

+
+

+ http://bit.ly/2jNl8fk +

+
+

+ + Romania + +

+
+

+ Tulcea county (eastern) +

+
+

+ December 28 +

+
+

+ Chickens, turkeys, and ducks +

+
+

+ 1 outbreak +

+
+

+ http://bit.ly/2jo9dRL +

+
+

+ + France (LPAI H5N1) + +

+

+ The World Organisation for Animal Health (OIE) reports that low-pathogenic H5N1 avian influenza has been detected in samples from guinea fowl at a poultry farm in the Department of Deux Sèvres, western France.  The farm also housed turkeys, ducks, and chickens; those species tested negative for the virus, but all birds at the farm were destroyed as a precautionary measure (the total population was 4,670 birds).  Control measures include a 1-km restricted zone around the outbreak, screening, disinfection/disinfestation, traceability, and stamping out. +

+

+ + India (HPAI H5N1) + +

+

+ Highly pathogenic H5N1 avian influenza has been found in two places in India. +

+

+ On January 2, an unreported number of backyard chickens were found dead in Kacharu village, Odisha state, in eastern India; a news release now confirms that samples from the dead chickens tested positive for highly pathogenic H5N1 avian influenza.  In December, several dead crows and other birds were found in the neighboring city of Rourkela: locals believe that they may also have been infected.  Officials began culling poultry in Karachu on January 8. +

+

+ Also on January 8, a news organization reported that HPAI H5N1 had been detected in two chicken samples from Kadaiya village in Daman district, western India.  Officials have declared the Daman district to be a ‘surveillance zone’ for the next 30 days (ending February 7), and they have prohibited the import, sale and storage of poultry products, and banned restaurants from serving chicken and egg products. +

+

+ + Taiwan (HPAI H5N2) + +

+

+ The Yunlin County government has reported a 5 + + th + + case of highly pathogenic H5N2 avian influenza virus this year on poultry farms in the county. In each case, the remaining birds on the farm were culled to prevent further spread of the disease, after positive testing by the county’s Animal Disease Control Center. The cause of these outbreaks is unknown. +

+

+ + UK (susp H5N8) + +

+

+ Senior veterinarians report a case of avian influenza, potentially the H5N8 strain, among a backyard flock in Yorkshire. Several of the 17 chickens and ducks have already died of the disease, and the remainder will be culled. In addition to culling, protection and surveillance zones have been put in place. The cause of this outbreak is unknown. +

+

+ + Avian Influenza in Humans + +

+

+ + China (LPAI H7N9) + +

+

+ A total of 8 new human cases of low pathogenic H7N9 avian influenza have been reported by authorities in China. +

+
    +
  • + Shenzhen Center for Disease Control reports 2 cases, a 50-year-old male in stable condition, and a 53-year-old male in critical condition. Both patients are reported to have a history of live poultry exposure. It is unknown if these 2 cases are included in the 14 H7N9 (7 fatal) reported to have occurred in Guangdong Province in December. +
  • +
  • + Jiangxi Provincial Health Family Planning Commission reports 4 new cases in Jiangxi Province. These patients are a 72-year-old female in critical condition, an 83-year-old female in critical condition, a 48-year-old male in stable condition, and a 55-year-old female in critical condition. It is unknown how the patients contracted the virus. +
  • +
  • + The Shanghai Municipal Health and Family Planning Commission reports that the city has its 3 + + rd + + case of H7N9 this season. The patient, a 58-year-old male, is currently being treated for the virus. It is unknown how he contracted the virus. +
  • +
  • + Health authorities in Guizhou Province have reported their 2 + + nd + + case of H7N9 this year. The patient, a 52-year-old male, is a poultry vendor, and is receiving treatment in a hospital. +
  • +
+

+ + Hong Kong (ex China, LPAI H7N9) + +

+

+ The Centre for Health Protection reports Hong Kong’s 3 + + rd + + imported case of low pathogenic H7N9 avian influenza virus in 3 weeks. The patient, a 62-year-old male, contracted the disease while traveling in the mainland before returning to Hong Kong. He is now in critical condition, and denies any recent exposure to poultry. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_01_23.html b/data/flu-report-html/usgs_avian_flu_report_2017_01_23.html new file mode 100644 index 0000000..7f7e302 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_01_23.html @@ -0,0 +1,2914 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jan 23, 2017 +

+
+ + newer + +
+

+ News Update January 23, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ + Global (H5N8) + +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in wild birds between January 12 and January 19, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + China + +

+
+

+ City of Wuhan (east-central) +

+
+

+ Reported January 12 +

+
+

+ 314 black swans +

+
+

+ At a zoo; 99 died, 215 slaughtered +

+
+

+ http://reut.rs/2jPLXw9 +

+
+

+ + Czech Republic + +

+
+

+ Olomouc Region (east) and Prague (west) +

+
+

+ January 11-16 +

+
+

+ 4 mute swans +

+
+

+ Found dead in 3 separate outbreaks +

+
+

+ http://bit.ly/2jCZEAM +

+
+

+ + Czech Republic + +

+
+

+ Cities of Prague (west) and Olomouc (east) +

+
+

+ January 11-16 +

+
+

+ 4 mute swans +

+
+

+ Found dead in 3 separate outbreaks +

+
+

+ http://bit.ly/2jCZEAM +

+
+

+ + France + +

+
+

+ Landes Department (southwest) +

+
+

+ January 11 +

+
+

+ 1 Eurasian buzzard +

+
+

+ Found dead +

+
+

+ http://bit.ly/2jCcBvg +

+
+

+ + Ireland + +

+
+

+ Tipperary County (central) +

+
+

+ Reported January 18 +

+
+

+ 1 whooper swan +

+
+

+ Found dead +

+
+

+ http://bit.ly/2jCisAN +

+
+

+ + Netherlands + +

+
+

+ Utrecht province (central) +

+
+

+ December 17 and January 10 +

+
+

+ Wild ducks +

+
+

+ 2 outbreaks: 55 found dead and 81 slaughtered in total +

+
+

+ http://bit.ly/2jcuWf2 +

+
+

+ + Romania + +

+
+

+ Eastern Romania +

+
+

+ January 2-10 +

+
+

+ 4 whooper swans, 2 mute swans +

+
+

+ Found dead in 3 separate outbreaks +

+
+

+ http://bit.ly/2jDcL53 +

+
+

+ + Slovakia + +

+
+

+ Cities of Nitra (west) and Košice (east) +

+
+

+ January 2 +

+
+

+ 4 muscovy ducks, 27 mute swans +

+
+

+ Found dead in 2 outbreaks; ducks were at a zoo. +

+
+

+ http://bit.ly/2jDtk0X +

+
+

+ + Slovenia + +

+
+

+ Maribor (east) +

+
+

+ January 1-10 +

+
+

+ 5 swans +

+
+

+ Found dead in 3 outbreaks +

+
+

+ http://bit.ly/2jDuHg6 +

+
+

+ + Ukraine + +

+
+

+ Chortoryia (west) +

+
+

+ January 1 +

+
+

+ 23 swans +

+
+

+ Found dead +

+
+

+ http://bit.ly/2k51XK5 +

+
+

+ + India (HPAI H5N1) + +

+

+ Highly pathogenic H5N1 avian influenza has been confirmed in samples from 53 crows which were found dead in the city of Bhubaneswar, Odisha State, in the first two weeks of January.  To date, no domestic chickens from the area have been affected, and there are no restrictions on poultry consumption.  Chickens are being vaccinated against HPAI H5N1 as a precaution, and any carcasses of crows and cranes are to be burned. +

+

+ + Uganda (HPAI H5) + +

+

+ A news report dated January 16 stated that mass mortality of wild birds (white-winged black terns) has been observed in a bird sanctuary on the shore of Lake Victoria, and that highly pathogenic avian influenza of the H5 subtype has been confirmed as the cause of the die-off.  The strain of AI involved in the mass deaths is unclear, but some of the birds had migrated from Europe, suggesting a possible link to the H5N8 outbreak occurring on that continent.  Some domestic fowl have also been affected. +

+

+ Avian Influenza in Poultry +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+

+ + Summary of HPAI H5N8 outbreaks reported in poultry between January 12 and January 19, 2016 + +

+
+

+ + Country + +

+
+

+ + Region + +

+
+

+ + Date of outbreak(s) + +

+
+

+ + Species + +

+
+

+ + Notes + +

+
+

+ + Link(s) + +

+
+

+ + Egypt + +

+
+

+ Sharqia Governorate (northeast) +

+
+

+ December 29 +

+
+

+ Ducks and chickens +

+
+

+ 1 outbreak +

+
+

+ http://bit.ly/2jQVntD +

+
+

+ + Greece + +

+
+

+ Tripoli (south) +

+
+

+ January 7 +

+
+

+ Caged hens +

+
+

+ 1 outbreak +

+
+

+ http://bit.ly/2j5EPu4 +

+
+

+ + India + +

+
+

+ Kerala State (south) +

+
+

+ October 19 – November 24 +

+
+

+ Not specified +

+
+

+ 23 outbreaks +

+
+

+ http://bit.ly/2j5QDfy +

+
+

+ + Japan + +

+
+

+ Yamagata (central) +

+
+

+ January 14 +

+
+

+ Chickens +

+
+

+ 1 outbreak +

+
+

+ http://bit.ly/2kjRhLQ +

+

+ http://bit.ly/2jJC2sp +

+
+

+ + Nigeria + +

+
+

+ Kaduna and Bauchi states (central) +

+
+

+ January 9-12 +

+
+

+ Chickens +

+
+

+ 3 outbreaks +

+
+

+ http://bit.ly/2jQTDjY +

+
+

+ + Poland + +

+
+

+ Southwest +

+
+

+ January 9-16 +

+
+

+ Not specified +

+
+

+ 3 outbreaks +

+
+

+ http://bit.ly/2kjZOy3 +

+

+ http://bit.ly/2kk28oM +

+
+

+ + Romania + +

+
+

+ Prahova county (southeast) +

+
+

+ January 3 +

+
+

+ Not specified +

+
+

+ Backyard flock +

+
+

+ http://bit.ly/2jDcL53 +

+
+

+ + Ukraine + +

+
+

+ Chortoryia (west) +

+
+

+ January 3 +

+
+

+ Not specified +

+
+

+ Backyard flock +

+
+

+ http://bit.ly/2jQYnpM +

+
+

+ + United Kingdom + +

+
+

+ Lincolnshire (east) +

+
+

+ Reported January 17 +

+
+

+ Turkeys +

+
+

+ Second outbreak in the area. +

+
+

+ http://bbc.in/2k9h1Hd +

+
+

+ + Bulgaria (HPAI H5N8) + +

+

+ A news report dated January 15 confirmed that highly pathogenic H5N8 avian influenza has been detected in 63 different locations in Bulgaria so far this season.  This is the highest number of outbreaks that the country has experienced in any winter to date.  An estimated 430,000 birds have been culled or have died from the disease. +

+

+ + France (HPAI H5N8) + +

+

+ On January 4, the French Ministry of Agriculture ordered a cull of nearly all healthy, outdoor-reared ducks and geese in Gers, Landes, and Haute-Pyrenees, the three departments which have been most severely affected by H5N8 this season.  On January 17, this order was expanded to include 45 additional municipalities outside of those departments.  The country had experienced 136 farm outbreaks and 9 wildlife detections as of January 17. +

+

+ + Uganda (HPAI H5) + +

+

+ The mass mortality event described in the Wild Animals section also affected some domestic ducks and chickens in the Masaka District, killing 7 and sickening 20 birds.  "In Masaka alone, wild and domestic birds are dying at alarming numbers, and in Lutembe wetland, white-winged terns are the ones dying," the report to OIE stated. +

+

+ + North Korea (HPAI) + +

+

+ Highly pathogenic avian influenza has been detected on a farm in Sunchon, South Pyongan Province, in central North Korea.  The North Korean government has responded by tightening hygiene and security measures around the ranch producing food for Kim Jong Un, banning the sale of chicken meat in public markets, and educating the public.  Official advice included suggesting that people to gargle with salt water and drink garlic juice.  Despite these measures, meat from infected or culled birds is still being sold on the black market. +

+

+ + Chile (LPAI H7) + +

+

+ Low-pathogenic H7 avian influenza has been detected at a turkey farm in Valparaiso, central Chile.  This is the second outbreak of this strain in the region so far in January, and the two outbreaks are linked.  According to the report, dated January 18, no turkeys died from the disease: testing was done when respiratory symptoms were observed among the birds.  35,000 turkeys will be culled to prevent the spread of the disease, and other preventative measures will be taken, including sanitary burial of culled birds and disinfection of the site. +

+

+ + Taiwan (HPAI H5N2) + +

+

+ Avian influenza has been detected in a duck farm in Taiwan for the first time this year.  This is the sixth outbreak in the country so far, and all previous outbreaks have involved chickens.  Highly pathogenic H5N2 avian influenza was confirmed in samples from the duck farm, according to a report from January 16; the farm is in Yilan County, northeast Taiwan.  The farm is in an area where other AI strains have been detected this year, and H5N2 was found during a monitoring program instituted because of those detections. +

+

+ Avian Influenza in Humans +

+

+ + China (LPAI H7N9) + +

+

+ Several new cases of low-pathogenic H7N9 avian influenza have occurred in China (including Hong Kong), although official reports from that country make it difficult to track the exact number.  At least 8 new cases have been reported in the week before January 16: +

+
    +
  • + 36-year-old female from Hengyang, who had poultry exposure; hospitalized in critical condition as of January 17. +
  • +
  • + 36-year-old male duck trader from Zhejiang province: became sick December 25 and died January 11. +
  • +
  • + 35-year-old male from Wuhan City, hospitalized in critical condition +
  • +
  • + 79-year-old patient from Kaili City +
  • +
  • + 4 new cases from Anhui Province (no more details were provided) +
  • +
+

+ + Macau (LPAI H7N9) + +

+

+ A 72-year old woman from Guangdong was hospitalized on January 8 in her hometown, with symptoms including fever and a cough.  On January 9, she left the hospital; she traveled to Macau on January 10, where she was hospitalized again.  As of January 13, she was in stable condition, and was being isolated in the hospital.  She raises chickens at home, and has frequent exposure to the local chicken market. +

+
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+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_02_01.html b/data/flu-report-html/usgs_avian_flu_report_2017_02_01.html new file mode 100644 index 0000000..f27defc --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_02_01.html @@ -0,0 +1,2154 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 01, 2017 +

+
+ + newer + +
+

+ News Update February 1, 2017 +

+
+

+ + Bangladesh (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) has reported cases of highly pathogenic H5N1 Avian influenza virus in the Rajshashi Medical College Campus in the Rajshahi Division in western Bangladesh. A total of 17 House Crows were found dead. Control measures include disinfection, dipping, surveillance outside containment and/or protection zone, surveillance within containment and/or protection zone, official disposal of carcasses, by-products and wastes, vaccination permitted, and no treatment of affect animals. The source of the outbreak is unknown, but HPAI H5N1 was also detected in crows in February 2016. +

+

+ + Croatia (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reported an outbreak of highly pathogenic H5N1 avian influenza virus in the village Muzilovcica in Sisacko-Moslavacka county in central Croatia. A total of 3 mute swans were found dead beginning on Dec 29, 2016. The diagnosis was confirmed by the Croatian Veterinary Institute in Zagreb.  Control measures include vaccination prohibited and no treatment of affect animals. The source of the outbreak is unknown. +

+

+ + Germany (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported two outbreaks of the highly pathogenic H5N8 avian influenza virus in the towns of Cottbus and Gersten in the states of Brandenburg and Lower Saxony respectively. The first outbreak occurred in a zoo in which an undentified duck was found dead. The second outbreak occurred on a farm in which a total of 32 birds were found dead and the remaining 2,968 birds were culled.  The diagnosis was confirmed by the Friedrich Loeffler Institute.  Control measures included movement control inside the country, screening, disinfection, traceability, quarantine, surveillance within and outside containment and/or protection zone, stamping out, official destruction of animal products, official disposal of carcasses, by-products, and wastes, control of wildlife reservoirs, zoning, vaccination prohibited, and no treatment of affected animals.  The source of the outbreak is unknown +

+

+ + Israel (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported three outbreaks of the highly pathogenic H5N8 avian influenza virus in 3 natural parks Beer Toviyya, Eilat, and Ramat Gan.  A total of 9 Glossy Ibis, Western Cattle Egret, Greater Flamingo, Mallard, Greylag Goose, Muscovy Duck, Black-headed Gull, Hooded Crow, and Armenian Gull were found dead. Control measures include movement control inside the country, screening, disinfection, dipping/spraying, quarantine, surveillance outside and within containment and/or protection zone, stamping out, official disposal of carcasses, by-products, and waste, zoning, vaccination prohibited, and no treatment of affected animals. The source of the outbreak is from contact with wild species. +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported nine outbreaks of the highly pathogenic H5N8 avian influenza virus in the states of Dolnoslaskie, Zachodnio-Pomorskie, Malopolske, Opolskie, and Mazowieckie. A total of 60 Mute Swans and Mallards were found dead. The diagnosis was confirmed by the National Veterinary Research Institute. Control measures include control of wildlife reservoirs, vaccination prohibited, and no treatment of affected animals. The source of the outbreak is unknown. +

+

+ + Avian Influenza in Poultry + +

+

+ + Bangladesh (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reported one outbreak of the highly pathogenic H5N1 avian influenza virus in the SS Agro Complex in Dhamrai in the state of Dhaka. A total of 732 birds were found dead and 2268 were destroyed.  Control measures include disinfection, spraying, surveillance within and outside the containment and/or protection zone, stamping out, official disposal of carcasses, by-products, and waste, vaccination permitted, and no treatment of affect animals. The source of the outbreak is unknown. +

+

+ + Czech Republic (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported two outbreaks of the highly pathogenic H5N8 avian influenza virus in the towns of Sobeslav and Preov in Johocesky and Olomoucky province respectively. In the first outbreak, 7 birds were found dead and 37 birds destroyed. In the second outbreak, 69 birds were found dead and 484 were destroyed. The diagnosis was confirmed by the State Veterinary Institute in Prague. Control measures include movement control inside the country, screening, disinfection, quarantine, stamping out, zoning, vaccination prohibited and no treatment of affected animals. The source of the outbreak is contact with wild species. +

+

+ + Germany (HPAI H5N8) + +

+

+ A news article reported multiple outbreaks of the highly pathogenic H5N8 avian influenza virus in the states of Brandenburg and Schleswig-Holstein. In the outbreaks, more than 45,000 turkeys were destroyed. The source of the outbreak is unknown. +

+

+ + Italy (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported an outbreak of highly pathogenic H5N8 avian influenza virus in the town of Mira in Veneto province. In the outbreak, 600 birds were found dead on a farm with 20,500 turkeys. The outbreak is reported to have begun on 1/20/17.The diagnosis was confirmed by the Experimental Zooprophylactic Institute. Control measures include movement control inside the country, screening, traceability, surveillance within containment and/or protection zone, zoning, vaccination permitted, and no treatment of affected animals. The source of the outbreak is unknown. +

+

+ + Japan (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported an outbreak of highly pathogenic H5N8 avian influenza virus in the town of Kijo in Miyazaki prefecture. In the outbreak, 150 birds in a flock of 168,400 broilers were found dead beginning on 1/24/17. The diagnosis was confirmed by the Mitazaki Livestock Hygiene Service Centre. Control measures include movement control inside the country, screening, disinfection, quarantine, stamping out, vaccination prohibited, and no treatment of affected animals. The source of the outbreak is unknown. +

+

+ + Kuwait (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported one outbreak of highly pathogenic H5N8 avian influenza virus in the town of Sulaibiyah in the Al Jahrah governorate. In the outbreak, 144 ducks, geese and pheasants were found dead and 141 of them were destroyed. The diagnosis was confirmed by Central Veterinary & Research Laboratory and Animal & Plant Health Agency in the U.K. Control measures include movement control inside the country, screening, disinfection, quarantine, surveillance outside and within the containment and/or protection zone, stamping out, official destruction of animal products, official disposal of carcasses, by-products, and waste, control of wildlife reservoirs, vaccination prohibited, and not treatment of affected animals. The source of the outbreak is unknown. +

+

+ + Slovenia (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reported three outbreaks of highly pathogenic H5N8 avian influenza virus in Lake Ptuj in Ptuj province, Pragersko in Maribor province, and Rankovci in Murska Sobata province. In the first two outbreaks, 2 mute swans were found dead. In the third outbreak, 3 mute swans were found dead. The diagnosis was confirmed by National veterinary institute. Control measures include vaccination prohibited and no treatment of affected animals. The source of the outbreak is unknown. +

+

+ + Taiwan (HPAI H5, H5N2) + +

+

+ A news article reported two outbreaks of highly pathogenic subtype H5, and H5N2 avian influenza virus in the Yunlin county. In this outbreak, more than 30,000 chickens have been culled. Control measures include control of movement of chickens and collecting specimen for testing. The source of the outbreak is unknown. +

+

+ + UK (HPAI H5N8) + +

+

+ A news article has reported an outbreak of highly pathogenic H5N8 avian influenza virus in the town of Preesall, Lancashire. 10,000 breeding pheasants have been culled. Control measures include keeping poultry away from wild birds. The source of the outbreak is unknown. A second farm located in Wyre with 1,000 pheasants has also been confirmed positive for the virus. The two farms have an unspecified business link and are located less than a mile from each other. +

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_02_07.html b/data/flu-report-html/usgs_avian_flu_report_2017_02_07.html new file mode 100644 index 0000000..12cd87b --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_02_07.html @@ -0,0 +1,2187 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Feb 07, 2017 +

+
+ + newer + +
+

+ News Update February 7, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ + Czech Republic (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports five new outbreaks of highly pathogenic H5N8 avian influenza in the Czech Republic.  The outbreaks occurred in the administrative units of South Bohemia, in southwestern Czech Republic, and in Olomouc and the Moravian-Silesian Region in the east.  The outbreaks occurred between 24 and 28 January, and in all cases involved single mute swans which were found dead and tested positive for H5N8.  Wildlife reservoir control has been implemented as a control measure. +

+

+ + Republic of Ireland (HPAI H5N8) + +

+

+ A news article dated 26 January reported that a whooper swan found dead in Gortermone in central Ireland has tested positive for highly pathogenic H5N8 avian influenza.  This is the fourth case of a wild bird testing positive for this strain in Ireland this season; no outbreaks have been reported in poultry. +

+

+ + Netherlands (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports five new outbreaks of highly pathogenic H5N8 avian influenza in the Netherlands.  The outbreaks occurred throughout the country between 18 and 28 January.  Three of the five outbreaks involved between 1 and 3 waterfowl found dead (in total: 3 mute swans, 2 greylag geese, 1 tufted duck).  In the fourth case, 3 unidentified waterfowl were found dead and 87 were slaughtered; in the fifth, 66 unidentified waterfowl were found dead and 14 were slaughtered.  No control measures are reported in response to these outbreaks. +

+

+ + Northern Ireland (HPAI H5N8) + +

+

+ A news article dated 2 February reported the first confirmed case of highly pathogenic H5N8 avian influenza in Northern Ireland.  A whooper swan was found dead on Lough Beg in County Londonderry, and reported by the public to an avian influenza surveillance program.  Testing of the swan confirmed the presence of the virus.  This is the first time that that virus was found in Northern Ireland. Poultry farmers are required to keep their animals indoors whenever possible, and to prevent contact with wild birds when indoor housing is not possible. +

+

+ + Portugal (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza, in the Algarve region of southern Portugal.  The disease was detected in samples from a grey heron, which was found dead on 27 January.  This is the first time that the virus has been detected in Portugal.  This outbreak has triggered an increase in biosecurity in the region, including a ban on poultry trading in local markets. +

+

+ + Romania (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports 10 new outbreaks of highly pathogenic H5N8 avian influenza among wild birds in Romania.  The outbreaks were concentrated in the eastern half of the country, and all occurred on 27 January.  In total, 23 whooper swans, 5 common teals, and 1 great black-backed gull were found dead.  This set of outbreaks occurred on the same day and in the same region as a set of outbreaks among backyard poultry (see next section).  Control measures include movement control inside the country, screening, disinfection/disinfestation, official disposal of carcasses, by-products and waste, stamping out, control of wildlife reservoirs, and zoning.  Vaccination is prohibited and affected animals were not treated. +

+

+ + Serbia (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports seven new outbreaks of highly pathogenic H5N8 avian influenza in Serbia.  The outbreaks occurred between 25 and 27 January, in the Autonomous Province of Vojvodina (northern Serbia).  All seven outbreaks involved mute swans found dead in natural parks: between 1 and 20 swans were found at each site, for a total of 43 swans.  Movement of potentially infectious material or animals is restricted within the country. +

+

+ + Avian Influenza in Poultry + +

+

+ + Cambodia (HPAI H5N1) + +

+

+ A new article dated January 31 reported that highly pathogenic H5N1 avian influenza has been found in samples from a chicken farm in Cambodia, in the southeastern province of Svay Rieng.  68 chickens were killed by the virus, and 322 were culled as a precautionary measure.  Cambodia had last reported the detection of HPAI H5N1 in May 2016. +

+

+ + Czech Republic (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports four new outbreaks of highly pathogenic H5N8 avian influenza among poultry in the Czech Republic.  The outbreaks occurred throughout the country between January 28 and 31, and involved three backyard flocks of chickens or mixed poultry, and one commercial duck farm.  In total, 1,283 birds died from the disease and 12,947 were destroyed; all susceptible birds died or were destroyed.  The outbreaks were caused by contact with wild birds; control measures include movement control inside the country, screening, disinfection/disinfestation, quarantine, stamping out, and zoning.  Vaccination is prohibited and affected animals were not treated. +

+

+ + Germany (HPAI H5N5) + +

+

+ A news article dated January 26 reported that highly pathogenic H5N5 avian influenza has been found at a turkey farm in the state of Schleswig-Holstein, in northern Germany.  This is the first time that this strain has been found in poultry in Germany, although it has been found in wild birds in Germany and several other countries.  In this case, 15,000 turkeys have been culled at the affected farm.  The strain has also been found at two other units of that farm, which are located in different villages, and the turkeys at those locations will also be culled. +

+

+ + Macau (LPAI H7) + +

+

+ A news article dated January 27 reported that low-pathogenic H7 avian influenza has been found in a sample from a live poultry market in Macau.  The infected chicken had been imported from mainland China.  Authorities have sealed the market in question, and have confirmed that no infected poultry reached retail markets; they will also cull 14,000 chickens and 4,000 pigeons.  In addition, all live poultry markets in the territory have been closed for three days and are being sterilized. +

+

+ + Macedonia (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza among poultry, in a backyard flock in Struga, western Macedonia.  The outbreak occurred on 20 January; out of 438 susceptible birds, 3 died and 125 were destroyed.  Control measures include movement control inside the country, screening, traceability, disinfection/disinfestation, surveillance outside containment and/or protection zone, and stamping out.  Vaccination is prohibited and affected animals were not treated. +

+

+ + Poland (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports three new outbreaks of highly pathogenic H5N8 avian influenza among poultry in Poland.  The outbreaks occurred throughout the country on 26 and 27 January, and involved unspecified poultry at two commercial farms and one backyard flock.  In total, 3,410 birds died from the disease and 2,842 were destroyed; all susceptible birds died or were destroyed.  Control measures include movement control inside the country, screening, disinfection/disinfestation, traceability, surveillance within and outside containment and/or protection zone, official disposal of animal products, carcasses, by-products and waste, stamping out, and zoning.  Vaccination is prohibited and affected animals were not treated. +

+

+ + Romania (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports five new outbreaks of highly pathogenic H5N8 avian influenza among backyard poultry in Romania.  The outbreaks were concentrated in the eastern half of the country, and all occurred on 27 January.  In total, 250 birds died from the disease and 335 were destroyed; all susceptible birds died or were destroyed.  Control measures include movement control inside the country, screening, disinfection/disinfestation, official disposal of carcasses, by-products and waste, stamping out, control of wildlife reservoirs, and zoning.  Vaccination is prohibited and affected animals were not treated. +

+

+ + UK (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza in Wyre, Lancashire, in northern England.  On or before 28 January, clinical signs and several deaths were observed in a flock of about 1,000 breeding pheasants at a game farm where other species are also housed: in total, 66,000 birds are scheduled to be culled.  The outbreak comes after a previous outbreak at a different pheasant farm located less than a kilometer away in Wyre, earlier that week. There is a business link between the two farms. Control measures include movement control inside the country, traceability, disinfection/disinfestation, official disposal of animal products, carcasses, by-products and waste, stamping out, zoning, a 3-kilometer protection zone, and a 10-km surveillance zone.  Vaccination is prohibited and affected animals were not treated. +

+

+ In addition, a news article reported that H5N8 was confirmed at a turkey farm in Lincolnshire, eastern England, on 26 January.  The farm housed 19,500 turkeys; an unspecified number died from the disease, and the remainder have been culled.  A 3-kilometer protection zone and a 10-km surveillance zone are in place around the farm. +

+

+ + Sweden (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza in a flock of backyard poultry in Stockholm County, eastern Sweden.  The outbreak occurred on 26 January; 4 birds in a flock of mixed poultry were found dead, and the remaining 28 birds have been euthanized.  Control measures include movement control inside the country, traceability, disinfection/disinfestation, official disposal of animal products, carcasses, by-products and waste, stamping out, and zoning.  Vaccination is prohibited and affected animals were not treated. +

+

+ Avian Influenza in Humans +

+

+ + China (LPAI H7N9) + +

+

+ On 25 January, The New York Times published an article summarizing the current state of low-pathogenic H7N9 avian influenza in China.  So far in this season, China has reported more than 225 human cases of the disease, including two which may have involved human-to-human transmission.  The fatality rate from H7N9 is not yet knows for this season, but China’s four-year average is 39%.  Sampling has been conducted in live poultry markets in Guangdong Province, and 9% of swabs (usually taken from cages, sewage gutters, feeding troughs, and chopping and de-feathering machines) tested positive for H7N9 – a number that officials consider ‘substantial.’  Upcoming Lunar New Year activities, which often include travel and increased purchases of live poultry, may cause an increase in human cases of H7N9. +

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_03_03.html b/data/flu-report-html/usgs_avian_flu_report_2017_03_03.html new file mode 100644 index 0000000..10acbbd --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_03_03.html @@ -0,0 +1,2144 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Mar 03, 2017 +

+
+ + newer + +
+

+ News Update March 3, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ + Spain (HPAI H5N8) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza in Catalonia, northeastern Spain.  On February 20, a white stork was found dead in a natural park; testing confirmed the presence of H5N8.  Earlier in January, two greylag geese found dead in Castilla y Leon province had tested positive for HPAI H5N8. The detection of the virus in the stork came as the same time as an outbreak in poultry (see below). Passive surveillance and biosecurity measures have been strengthened; no other control measures were enacted. +

+

+ Avian Influenza in Poultry +

+

+ + China (HPAI H7N9) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H7N9 avian influenza in a livestock market in Guangdong, China.  Samples were collected at a live bird market on January 10 2017, and an unspecified number of samples have tested positive for the virus.  This is the first time that the highly pathogenic form of the H7N9 virus has been detected in poultry.  Since the appearance of H7N9 in Chinese poultry in 2013, all previous detections have been of the low pathogenicity form. The markets in question have been closed and regional surveillance has increased; additional control measures include movement control inside the country, screening, disinfection/disinfestation, and quarantine.  Vaccination is permitted, and there has been no treatment of affected animals +

+

+ + France (HPAI H5N8) + +

+

+ The Agricultural Ministry of France is conducting another preemptive duck cull in the Landes department (southwestern France).  Previously in January, 1.3 million birds were preemptively culled in three departments on a selective basis, but H5N8 outbreaks continue to occur. The ministry now plans to cull all remaining 600,000 ducks in the region. +

+

+ + South Korea (HPAI H5N8) + +

+

+ A new outbreak of highly pathogenic H5N8 avian influenza was reported on February 22.  It occurred at a duck farm in Haenam county, South Jeolla province in southwestern South Korea. 23,000 ducks have been culled. Most of Korea’s avian influenza domestic poultry outbreaks this winter has been with the H5N6 strain, this is the first time that H5N8 has been involved. +

+

+ + South Korea (AI) + +

+

+ A new outbreak of unspecified avian influenza was reported at a chicken farm in South Chungcheong Province, central South Korea: 100 chickens died, and 90,000 were slaughtered at the farm after samples from that farm tested positive for avian influenza.  Another 1,108 chickens and ducks were slaughtered at farms within 1.9 miles of the affected chicken farm.  Officials believe that feces from migrating birds were the source of this outbreak; the virus may have been transported in feces-contaminated water. +

+

+ + Spain (HPAI H5N8) + +

+

+ On February 23, the Ministry of Agriculture, Livestock, Fisheries & Food in Catalonia (northeastern Spain) reported that highly pathogenic H5N8 avian influenza was found at a duck farm in the Catalonian province of Girona.  As a precautionary measure, all 17,327 ducks at the affected farm have been culled and all farms within a 3-kilometer protection zone will be inspected.  The source of the outbreak is suspected to be contact with migrating wild birds (a stork found dead in Catalonia on February 20 tested positive for H5N8; see above), and hunting of wild birds has been banned within 10 kilometers of the farm.  This is the first poultry outbreak of avian influenza in Spain this season. +

+

+ + Taiwan (HPAI H5N2) + +

+

+ On February 15, a chicken with avian influenza-like symptoms was found at a wholesale market in Taipei City; the chicken tested positive for H5N3 on February 17.  The market was shut down and sterilized, and chicken carcasses from that batch were destroyed. +

+

+ + Taiwan (HPAI H5N6) + +

+

+ A news article dated February 20 reports that H5N6 avian influenza was found in a batch of 400 abandoned chicken carcasses in Hsinchu County, northern Taiwan.  This is the first case of H5N6 in Hsinchu County this year.  Authorities suspect that the dead chickens were dumped by a nearby farm. +

+

+ On February 18, officials confirmed several new cases of HPAI H5N6 avian influenza: outbreaks occurred at a goose farm in Chiayi County, among ducks in a slaughterhouse in Yilan County, and at a chicken farm in Yunlin County, where 22,000 chickens have been culled.  Transportation and slaughter of poultry was banned for seven days, starting on February 17. +

+

+ + Vietnam (HPAI H5N1) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N1 avian influenza in a flock of backyard poultry in B?c Liêu Province, southern Vietnam.  The outbreak occurred on February 14; 2000 birds died and the remaining 4160 were destroyed.  Control measures include vaccination in response to the outbreak, disinfection/disinfestation, stamping out, and surveillance within containment and/or protection zone.  There has been no treatment of affected animals +

+

+ + Vietnam (HPAI H5N6) + +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N6 avian influenza in a flock of backyard poultry in Qu?ng Ngãi Province, central Vietnam.  The outbreak occurred on February 12; 400 birds died and the remaining 2385 were destroyed.  Control measures include vaccination in response to the outbreak, disinfection/disinfestation, stamping out, and surveillance outside containment and/or protection zone.  There has been no treatment of affected animals +

+

+ Avian Influenza in Humans +

+

+

+

+ + China (LPAI H7N9) + +

+

+ Chinese scientists have discovered that the low-pathogenic H7N9 virus, which causes disease in humans but often is asymptomatic in poultry, may have mutated to become more dangerous to birds.  If this is the case, it would be easier to detect and contain, but also could become more damaging to poultry farmers. +

+

+

+

+ The WHO released a report on February 20 that summarizes human cases of H7N9 in China between January 19 and February 14.  In that time, China reported 304 laboratory-confirmed cases (including 36 deaths).  Over half of the cases came from Jiangsu (67), Zhejiang (53), and Guangdong (32); 28% of the cases were female; and the median age of the patients was 58 years.  144 cases reported exposure to poultry, 11 cases have no clear exposure to poultry, and 149 cases were under investigation at the time of the report +

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_03_08.html b/data/flu-report-html/usgs_avian_flu_report_2017_03_08.html new file mode 100644 index 0000000..862cde2 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_03_08.html @@ -0,0 +1,2142 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
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+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Mar 08, 2017 +

+
+ + newer + +
+

+ News Update March 8, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ Lithuania (HPAI H5N8) +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza in the city of Kaunas. On Feburary 27th, 6 mute swans were found dead near the river Nemunas. The presence of the virus was confirmed by laboratory testing at the National Food and Veterinary Risk Assessment Institute. Control measures include surveillance outside containment zones, official disposal of carcasses, and control of wildlife reservoirs. This is the first time that the HPAI H5N8 virus has been detected in Lithuania. +

+

+ Slovenia (HPAI H5N5) +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N5 avian influenza in three small villages in the municipality of Novo Mesto. According to laboratory results reported on January 27th by the National Veterinary Institute 3 mute swans found dead in the river Krka tested positive for the virus. The source of the outbreak is unknown. Slovenia has had a number of HPAI H5N8 outbreaks, most recently in January, but this is the first time that HPAI H5N5 has been found in Slovenia. +

+

+ Serbia (HPAI H5N5) +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N5 avian influenza in the city of Zrenjanin. Laboratory testing by the Veterinary Specialist Institute, Kraljevo confirmed the presence of the virus in a mute swan found dead in a natural park on January 20th. Authorities are restricting movement within the country; vaccination is permitted. This is the first time that HPAI H5N5 has been detected in Serbia. +

+

+ Uganda (“bird flu”) +

+

+ The Ministry of Agriculture is surveilling the districts of Budaka and Kirsoro following unconfirmed reports of avian influenza in wild birds. These suspected outbreaks come after an outbreak that killed over 1,200 wild birds in the vicinity of Lake Victoria. Officials are implementing an awareness campaign and increasing surveillance in the country. There has been no confirmation or further details besides an initial report. +

+

+ Avian Influenza in Poultry +

+

+ Czech Republic (HPAI H5N8) +

+

+ The World Organisation for Animal Health (OIE) reports a new outbreak of highly pathogenic H5N8 avian influenza at two poultry farms in the city of Cheb on February 28th. Affected species include: 2,196 broilers, 414 turkeys and 32,073 ducks. The outbreak resulted from contact with wild species. Control measures include movement control inside the country, screening, disinfection, quarantine, stamping out, and zoning. Vaccination is prohibited and affected animals are not being treated. +

+

+ France (HPAI H5N8) +

+

+ As of February 24th, French officials confirmed an additional 38 outbreaks at poultry farms across the country, bringing the total to 341 outbreaks in farms this year. 32 of the outbreaks were in the heavily affected Department of Landes. +

+

+ South Korea (HPAI H5) +

+

+ Authorities report an outbreak of highly pathogenic avian influenza (H5) at a chicken farm in the city of Nonsan in the South Chungcheong Province. Approximately 70,000 chickens were culled in response to the outbreak and authorities have disposed of eggs at 3 hatcheries and closed a feed factory and 2 fertilizer farms in the vicinity. Authorities are investigating the source of the outbreak, but the farm is near a reservoir where migratory birds gather as well as a meat processing plant. Control measures include quarantine measures, disinfection, and distribution of vaccines. +

+

+ Nepal (HPAI H5N1) +

+

+ The World Organisation for Animal Health reports a new outbreak of highly pathogenic avian influenza (H5N1) in backyard flocks of chickens and ducks the city of Pokhara. A total of 2,162 birds were culled after the virus was detected during post-operative surveillance outside the containment zone of the initial outbreak in the Khalte Masina region. None of the birds had showed clinical signs. Laboratory testing by the Central Veterinary Laboratory confirmed the presence of the virus. Officials have issued a 10-day suspension on the trade of eggs, meat, and poultry in Pokhara. Other control measures include movement control inside the country, screening, disinfection, quarantine, surveillance inside and outside containment zones, stamping out, and official destruction and disposal of animal products, carcasses, by-products, and waste. Vaccination is prohibited. +

+

+ Nigeria (HPAI H5N1) +

+

+ The World Organisation for Animal Health reports a new outbreak of highly pathogenic avian influenza (H5N1) in layers and pullets in backyard flocks and poultry farms throughout the country. A total of 6 cases were confirmed and an additional 12,806 susceptible birds were culled. The source of the outbreak is unknown and poor farm biosecurity is a concern in the region. Control measures in place include movement control inside the country, disinfection, quarantine, and official destruction or disposal of animal products, carcasses, by-products, and waste. Vaccination is prohibited. Over a hundred farms have been affected since H5N1 reappeated in Nigeria in 2014. +

+

+ Poland (HPAI H5N8) +

+

+ The World Organisation for Animal Health reports a new outbreak of highly pathogenic avian influenza (H5N8) in the town of Mikstat. A total of 11,215 birds were culled from a poultry farm after laboratory testing by the National Veterinary Research Institute confirmed the presence of the virus. Control measures include screening, disinfection, traceability, surveillance inside and outside the containment zone, stamping out, and official destruction or disposal of animal products, carcasses, by-products, and waste. Vaccination is prohibited. +

+

+ Taiwan (HPAI H5) +

+

+ Officials in Taiwan report outbreaks of highly pathogenic avian influenza at 3 poultry farms in Yunlin County (H5) and 1 farm in Pingtung County in Taipei (H5N8). Affected species include 18,000 chickens, 1,456 ducks, and 750 geese. A spokesperson for Yunlin’s Animal and Plant Disease Control Center reported that this was the first outbreak in the county this year. The 3 Yunlin County outbreaks were discovered on the same day that officials lifted the nationwide ban on the slaughter and transport of poultry. +

+

+ UK (HPAI) +

+

+ Officials have ordered the slaughter of 55,000 birds in response to the confirmation of the virus on an second farm on the Norfolk/Suffolk border near the town of Diss. The farm was tested as part of the investigation of the Feburary outbreak near Diss. Other control measures include cleansing, disinfection, and ongoing 3 km protection and 10 km surveillance zones around Redgrave. The Food Standards Agency stated that the outbreaks do not pose a food safety risk for consumers. +

+

+ USA (HPAI H7N9) +

+

+ The U.S. Department of Agriculture’s Animal and Plant Health Inspection Service reported that highly pathogenic avian influenza (H7N9) at a broiler breeder farm in southern Tennessee. The farm has been placed under quarantine and the flock of 73,500 birds will be culled. Approximately 30 additional farms in a 10km radius of the farm have been placed under quarantine. Producers in the area have imposed heightened biosecurity measures. Genetic characterization of the virus showed that it is entirely of North American wild bird origin and not related to the H7N9 strain in China. +

+

+ USA (LPAI H5N2) +

+

+ The World Organisation for Animal Health (OIE) has reported an outbreak of low pathogenic H5N2 avian influenza at a turkey farm in Barron County, Wisconsin. The flock of 84,000 birds was tested after birds at the farm exhibited signs of depression. None of the birds had died as of the time of the reporting. The premises have been quarantined. Testing confirmed that the virus originated from wild birds from North America. +

+

+ Avian Influenza in Humans +

+

+ China (H7N9) +

+

+ The National Health and Family Planning Commission announced 35 new cases of H7N9 in humans from February 14th-24th. Although authorities are reporting a slowdown in the spread of the virus, experts encourage people to avoid contact with live and dead birds and practice proper food hygiene. +

+

+ Egypt (HPAI H5N1) +

+

+ On February 25th, The Health Ministry reported that a 48-year-old farm laborer from the village of Tawfikia died from highly pathogenic avian influenza (H5N1). The Directorate of Veterinary Medicine reported that the man worked at a duck farm that had recent had an outbreak of the disease. Affected birds were culled and healthy birds were vaccinated. This is the first human fatality in the country this year. +

+
+

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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_03_22.html b/data/flu-report-html/usgs_avian_flu_report_2017_03_22.html new file mode 100644 index 0000000..c078f6f --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_03_22.html @@ -0,0 +1,2176 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Mar 22, 2017 +

+
+ + newer + +
+

+ News Update March 22, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ + Austria (HPAI H5N8) + +

+

+ Highly pathogenic H5N8 avian influenza was detected in 21 Dalmatian pelicans at the Schoenbrunn Zoo in Vienna.  The zoo’s pelicans have been kept in a tent since December to prevent infection, but on March 6, one pelican became ill. It was euthanized the same day because of the severity of the disease, and subsequent tests confirmed that it had been infected with HPAI H5N8.  The entire flock was then tested, and all 20 remaining birds were positive for the virus; on March 10, they were also euthanized. Until this happened, the Schoenbrunn Zoo had the world’s largest flock of the endangered Dalmatian pelicans. +

+

+ + Nepal (HPAI H5N1) + +

+

+ Highly pathogenic H5N1 avian influenza has been detected in a zoo in the Sunsari District, southeastern Nepal.  Authorities suspected avian influenza after several birds were found dead, over the course of about a week, in a village children’s park; the virus was confirmed present on 6 March.  The park has been closed for a month as a precaution.  The species involved included a turkey, a peacock, an eagle owl, and a guinea pig; it is unclear whether the birds were free-ranging or kept in enclosures. +

+

+ Avian Influenza in Poultry +

+

+ + Iran (HPAI H5N8) + +

+

+ A news report dated 13 March summarized the impacts of avian influenza on poultry in Iran so far this season.  Avian influenza was detected in the country starting in November of 2016.  As of 13 March 2017, it has been found in 24 of Iran’s 31 provinces, and 12 million chickens have been culled.  The news report did not specify the influenza strain or strains involved, but HPAI H5N8 has been the only strain reported in the country since 2016. +

+

+ + Malaysia (HPAI H5N1) + +

+

+ Highly pathogenic H5N1 avian influenza has been detected in Kelantan State, in the northern part of West (Peninsular) Malaysia.  The outbreak was first detected on 6 March, in backyard poultry in a small village; authorities implemented control measures (including culling at least 170 chickens), and initially believed it was contained in that area.  However, the virus has subsequently been detected in at least 20 more villages, and 24,000 birds have been culled in an renewed effort to control the spread of the virus.  Backyard poultry have been affected thus far, but none in commercial farms as of 16 March. The H5N1 strain of avian influenza has been known to infect humans in the past (although it is not known to be transmitted well from person to person), and villagers are being screened; so far no human cases have been found.  The source of the outbreak is unknown, but it may have been imported into the area by birds transported for cockfighting. +

+

+ + Nepal (HPAI H5N8) + +

+

+ The World Organization for Animal Health (OIE) reports an outbreak of highly pathogenic H5N8 avian influenza among layer chickens in the Sunsari district of southeastern Nepal.  The outbreak began on 1 March; 3,650 layers died and 2,550 were destroyed.  26 local hens were also destroyed.  Control measures include movement control inside the country, screening, disinfection/disinfestation, quarantine, surveillance within and outside containment and/or protection zone, stamping out, and official disposal of carcasses, by-products and waste.  The source of the outbreak is unknown.  This is the same district which experienced an outbreak of HPAI H5N1 among birds at a park, which occurred over about two weeks prior to 6 March, when it was confirmed (see previous section). +

+

+ + Poland (HPAI H5N8) + +

+

+ The world organization for animal health reports two new outbreaks of highly pathogenic H5N8 avian influenza in the province of Wielkopolska (Greater Poland), in west-central Poland.  Both occurred at farms; one began on 6 March and the other on 8 March.  In both cases, all susceptible animals have been destroyed (for a total of 734 birds which died or were destroyed at the first farm, and 17,510 at the second).  Control measures include screening, disinfection/disinfestation, traceability, surveillance within and outside containment and/or protection zone, stamping out, official destruction of animal products, carcasses, by-products and waste, and zoning.  The source of the outbreak is unknown +

+

+ + Russia (HPAI H5N8) + +

+

+ Highly pathogenic H5N8 avian influenza has been detected at least one poultry farm in Moscow Oblast, in western Russia.  The outbreak was confirmed on 1 March; 6,000 birds died from the disease, and 250,000 will be culled.  Reports are inconclusive, but suggest that there may have been one or two additional outbreaks at other commercial poultry farms in Moscow Oblast.  It is possible that up to 4 million animals may have to be culled to contain the outbreak.  In addition, 14 farm workers have been hospitalized, reportedly with symptoms of avian influenza; however, HPAI H5N8 is not known to infect humans. +

+

+ + South Korea (HPAI H5N6 & H5N8) + +

+

+ On 8 March, the South Korean Ministry of Agriculture, Food, and Rural Affairs reported two new outbreaks of avian influenza: one involved HPAI H5N6 at a chicken farm near Seoul, and the other involved HPAI H5N8 at a duck farm in southwestern South Korea.  50,000 birds have been culled between the two outbreaks; in total, South Korea has culled 35 million birds so far this season.  This has been South Korea’s worst season for avian influenza. +

+

+ + Taiwan (HPAI H5N2, H5N8, H5N6 and unspecified H5) + +

+

+ Several recent news articles have reported on avian influenza in Taiwan.  As of March 15, countrywide 754,524 birds have been culled at 91 poultry farms so far this season, according to the Council of Agriculture (COA).  Six new outbreaks were reported between 8 and 16 March; details were not provided for four of the outbreaks, except that three involved H5N2 and one involved H5N8.  The fifth outbreak involved H5N6, and occurred at a duck farm in Hualien County: all 14,647 ducks were culled on 9 March.  40 workers involved in that outbreak are being monitored for signs of avian influenza, and two, who had failed to wear protective gear at work, have been given precautionary antivirals.  The sixth outbreak occurred on 16 March, on a farm in Changhua County; 1,277 ducks were culled.  The COA currently requires ducks to be tested for avian influenza before they can be slaughtered for sale, and H5 avian influenza was detected in ducks from this farm during this routine testing. +

+

+ + USA (LPAI H7N9) + +

+

+ The World Organization for Animal Health (OIE) reports that low-pathogenic H7N9 avian influenza was found on 6 March during routine pre-slaughter testing of broiler chickens in Giles County, Tennessee, southeastern USA.  The birds did not show any external symptoms, but all 16,500 were destroyed as a precautionary measure. Other control measures include movement control inside the country, quarantine, surveillance within and outside containment and/or protection zone, stamping out, official disposal of carcasses, by-products and waste, zoning, and disinfection/disinfestation.  This is the first time H7N9 LPAI has been detected in commercial poultry in the United States this year, and the first time it has been detected in poultry in Tennessee. +

+

+ + USA (HPAI H7N9) + +

+

+ The United States Department of Agriculture (USDA) Animal and Plant Health Inspection Service (APHIS) issued a bulletin on 16 March confirming that there have been two outbreaks of highly pathogenic H7N9 avian influenza in Lincoln County, Tennessee, southeastern USA.  Details of the fist outbreak were not reported, but the second outbreak involved a commercial flock of 55,000 chickens, which were tested after they began showing symptoms.  The flock will be destroyed, and the premises have been quarantined; in addition, commercial and backyard poultry within a 10-kilometer radius of the site will be tested. +

+

+ + USA (unknown AI) + +

+

+ The Alabama Department of Agriculture and Industries reports that three outbreaks of avian influenza are suspected to have recently occurred in the state (in southeastern USA).  The first two suspected outbreaks occurred prior to 12 March (dates were not reported), and occurred in a commercial chicken flock in Lauderdale County and in a backyard flock in Madison County.  The third suspected outbreak involved samples collected as part of a routine surveillance effort; the samples were taken at a flea market in Jackson County on 12 March.  Samples from all three potential outbreaks are currently being tested.  A precautionary Stop Movement Order has been issued by the Alabama State Veterinarian to preclude the possible spread of the disease. The Madison and Jackson county events are reported as LPAI H7N9 but no official USDA statement has been released on them as yet. +

+

+ + Vietnam (HPAI H5N1) + +

+

+ The World Organization for Animal Health (OIE) reports two new outbreaks of highly pathogenic H5N1 avian influenza in Vietnam.  Both outbreaks occurred on 3 March; one involved a backyard poultry flock in B + + ? + + c Ninh Province, in the northern part of the country, and the other involved a backyard poultry flock in Tây Ninh Province in southern Vietnam.  Between the two, 2,050 birds died from the disease and 4,550 were destroyed.  Other control measures include vaccination in response to the outbreak, disinfection/disinfestation, stamping out, and surveillance within containment and/or protection zone. +

+

+ + Vietnam (HPAI H5N6) + +

+

+ An outbreak of highly pathogenic H5N6 avian influenza was reported in Quang Ngai Province, southern Vietnam, on 7 March.  The outbreak began on 2 March at a poultry farm.  Authorities have culled over 4,000 chickens in response to the outbreak.  This is the first report of this strain in Vietnam. +

+

+ Avian Influenza in Humans +

+

+ + China (H7N9) + +

+

+ In China, between 3 and 9 March, 22 new human cases of H7N9 avian influenza were reported by the Chinese National Health and Family Planning Comission.  Those cases included 3 deaths.  The 22 patients, 18 of which had known exposure to poultry, first reported symptoms between 19 February and 4 March; they included 15 males and seven females; and their ages were between 15 and 79. The patients were from Henan and Jiangxi )four cases each), Guangxi and Sichuan (three cases each), Fujian, Hunan and Jiangsu (two cases each), and Guizhou and Hubei (one case each). +

+

+ The commission also reported that avian influenza was found in 8.3% of environmental samples collected inpoultry markets in Guangdong between February 27 and March 5 (n=939). +

+

+ A corrected news article reports that there were 61 fatalities and 160 cases of human H7N9 avian influenza in February 2017.  Since October 2016, there have been 161 deaths.  This is higher than in previous years. +

+
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+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_05_12.html b/data/flu-report-html/usgs_avian_flu_report_2017_05_12.html new file mode 100644 index 0000000..bcf5197 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_05_12.html @@ -0,0 +1,2142 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
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+ Avian Influenza Archive from May 12, 2017 +

+
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+ News Update May 12, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ Bangladesh (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza has been detected in Dhaka Bangladesh. The outbreak of the virus resulted in the death of 124 house crows; 42 additional crows were culled. The virus was first detected on January 14 + + th + + , 2017, with a previous outbreak occurring in February, 2016. The source of the outbreak is unknown but the outbreak has been declared resolved as of March 16, 2017. +

+

+ Hong Kong (HPAI H5N6) +

+

+ An outbreak of highly pathogenic H5N6 avian influenza has been reported by the Fisheries and Conservation Department in Hong Kong, China on April 12, 2017. A red-whiskered bulbul found dead on a playground in Kowloon was found to have been infected with the virus. The AFCD has advised farmers to strengthen precautionary and biosecurity measures against avian influenza. +

+

+ Avian Influenza in Poultry +

+

+ Italy (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza has been detected in Northern Italy’s Pordenone and Verona provinces. The outbreak of the virus has resulted in the death of 56 birds on two local farms.  The virus outbreak was first seen on January 20 + + th + + in Italy’s Venezia province and resulted in the death of 600 birds and the culling of 19,900 turkeys. Control measure applied include movement control inside the country, screening, traceability, surveillance within containment, zoning, vaccination prohibited, and no treatment of affected animals. +

+

+ Mexico (HPAI H7N3) +

+

+ On April 4, 2017 it was reported that highly pathogenic H7N3 avian influenza has been detected on a commercial farm in Jalisco, Mexico. The virus was detected among 15,000 laying hens whom had been previously vaccinated. The farm is now quarantined and the birds will be culled. A similar outbreak was detected in the same facility in 2012. Discovery of the virus was aided by a surveillance program implemented after the 2012 detection. +

+

+ Nigeria (HPAI H5N1) +

+

+ Highly pathogenic H5N1 avian influenza was been detected in that state of Toro, Nigeria on March 24, 2017. The recurrence of the virus caused the death of 315 birds and resulted in additional 4,400 being culled. The outbreak was first confirmed on January 8 + + th + + , 2015. The source of the outbreak is unknown. Control measures applied include movement control inside the country, disinfection, quarantine, vaccination prohibited, and no treatment of affected animals. +

+

+ Romania (HPAI H5N8) +

+

+ On April 12, 2017 highly pathogenic H5N8 avian influenza virus was detected in the following Romanian counties of Teleorman, Ialomita, and Bucuresti. This is the first time this particular strain of the virus was detected in Romania. The virus killed 9 mute swans and resulted in the culling of an additional 24. The cause of the virus was determined to be contact with wild species. +

+

+ South Korea (H5) +

+

+ Highly pathogenic H5 avian influenza was reported to be confirmed in South Korea’s Chungcheong and Jeolla Provinces on March 30, 2017. 22 thousand birds were culled after the recent test resulted in a positive confirmation of the H5 strain. Avian influenza was first detected in South Korea on November 16, 2016 and roughly 38 million poultry birds have been culled since. +

+

+ Taiwan (HPAI H5N2) +

+

+ On March 30, 2017 it was reported that highly pathogenic H5N2 avian influenza was confirmed in Changhua County in central Taiwan. The county’s Animal Disease Control Center reported that the detection of the virus lead to the culling of 16,989 birds. Since the beginning of the year, 112 poultry farms have been infected with the virus and 1,034,582 birds have been culled. +

+

+ Taiwan (HPAI H5) +

+

+ On April 6, 2017 it was reported that highly pathogenic H5 avian influenza was detected in Taipei, Taiwan. The virus resulted in the culling of more than 10,000 chickens on a farm in Chiayi County.  A total of 1,034,592 birds have been culled from 112 poultry farms infected with the virus across Taiwan in 2017. +

+

+ USA (H7N9) +

+

+ On March 27, 2017 it was reported that Low-pathogenic H7N9 avian influenza has been detected for the first time in Georgia, the United States’ leading chicken meat-producing state. The low-pathogenic strain has the potential to mutate into highly pathogenic avian influenza and as a precaution the 18,000 breeder birds have been culled. In Georgia, Alabama, Tennessee, and Kentucky over 200,000 breeding chickens have died due or been culled to contain the virus in the past month. +

+

+ UK (HPAI H5N8) +

+

+ It was reported on May 5, 2017 that highly pathogenic H5N8 avian influenza has been detected in a flock of chickens in a backyard flock in Lancashire, England. The flock contained an estimated 30 chickens: many have died from the virus, and the remaining live birds will be culled.  The outbreak comes on the heels of the lifting of restrictions on free-rang birds being kept indoors. The farm is located near a previous outbreak among pheasants that resulted in the culling of 10,000 in late January, 2017. +

+

+ Vietnam (HPAI H5N1) +

+

+ Highly pathogenic H5N1 avian influenza was detected in four provinces within Vietnam including Vinh Long, Dak Lak, Quang Ninh, and Thua Thien-Hue on April 19, 2017. The virus resulted in the death of 75 birds and an additional 2425 culling’s. The cause of the outbreak is unknown. The animal health department of Vietnam stated that the country faces a high risk of bird flu epidemic. Currently, the H7N9 and H5N2 strains of avian influenza haven’t been found in Vietnam. +

+

+ Avian Influenza in Humans +

+

+ Tibet (H7N9) +

+

+ On April 8, 2017 Chinese authorities have halted live poultry trade after the first human case of highly pathogenic avian influenza was reported in Tibet. A 41 year-old man was diagnosed with the H7N9 infection in Tibet’s Sichuan province. The man was involved in the live poultry trade and is currently being quarantined. +

+

+ China (H7N9) +

+

+ China has reported 46 human fatalities from highly pathogenic H7N9 avian influenza in March, 2017. A total of 96 cases of human infection were reported from March. In February, 2017 a total of 61 human fatalities from the virus were reported by China. +

+
+

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+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_05_30.html b/data/flu-report-html/usgs_avian_flu_report_2017_05_30.html new file mode 100644 index 0000000..a14e3e5 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_05_30.html @@ -0,0 +1,2112 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from May 30, 2017 +

+
+ + newer + +
+

+ News Update May 30, 2017 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ Netherlands (HPAI H5N5) +

+

+ Highly pathogenic H5N5 avian influenza was confirmed from samples from Utrecht on June 1, 2017. The event is considered ongoing and the source of the outbreak is unknown. The outbreak resulted in the death of two wild graylag geese found dead on May 22. Control measures applied include vaccination prohibition and no treatment of affected animals. +

+

+ USA (dogs, Canine H3N2) +

+

+ H3N2 canine influenza was detected by the University of Florida College of Veterinary Medicine on May 31, 2017. Seven dogs have been diagnosed and six others are suspect pending further testing. Common symptoms of dog flu include sneezing, nasal discharge and frequent coughing. According to the CDC, there is no evidence that dog flu can infect humans and the percentage of dogs that die from the virus is small. +

+

+ + Avian Influenza in Poultry + +

+

+ China (HPAI H7N9) +

+

+ Highly pathogenic H7N9 avian influenza was detected in Yulin in Shaanxi province, China on May 23, 2017. The event is ongoing and the source of the outbreak is currently unknown. The outbreak of the virus caused the death of 20,000 chickens at an egg farm with 45,000 birds. Control measures applied include movement control inside the country, screening, quarantine, stamping out, disinfection, and no treatment of affected animals. +

+

+ Congo (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza was detected in the Democratic Republic of Congo on April 25, 2017. The virus has been detected in three locations in Ituri province which borders Uganda where H5N8 was recently reported. The event is considered ongoing and the cause of the virus is currently unknown. The outbreaks have caused the death of over 12,000 birds in the country. Control measures applied include movement control inside the country, quarantine, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ Luxembourg (AI) +

+

+ Detection of avian influenza in Luxembourg has been reported on June 2, 2017. The country has banned the transportation of live poultry for one week in an attempt to limit the spread of the virus to other farms. Luxembourg?s Ministry of Agriculture has called for farmers to report all abnormal poultry deaths to the vet immediately. No further information, such as the subtype of the virus is available at this time and the outbreak has not been reported to OIE. +

+

+ Nigeria (AI, suspect HPAI H5N1) +

+

+ The Federal Ministry of Agriculture and Rural Development of Nigeria reported an outbreak of avian influenza in seven states of the country on June 2, 2017. The states affected by the outbreak include Bauchi, Kaduna, Kano, Katsina, Nasarawa, Plateau, and Federal Capital Territory. The director expressed regret over the poor bio-security practices by some poultry farmers believed to be the cause of the continuing spread of the disease across the country. +

+

+ Russia (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza was detected in the districts of Malopurginsky and Bol?sheboldinsky in the Udmurtia Republic (Udmurtskaya), Russia. The event is considered ongoing and the source of the outbreak is unknown. The virus has caused the death of 282 birds. Control measures applied include movement control, disinfection, screening, quarantine, official disposal of carcasses, stamping out, vaccination prohibition, and no treatment of affected animals. +

+

+ South Korea (H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the province of Jeju and North Jeolla, South Korea. A farmer on Jeju Island had purchased five silkie chickens from a local ?traditional? market and added them to his backyard flock. They all died over the next two days, but the deaths were un-reported until other chickens began to die. HPAI H5N8 was detected in the samples collected from his farm. The silkies originate from a farm in Gunsan, North Jeolla province, which has sold birds to Gyeonggi and South Gyeongsang in addition to Jeju province. Roughly 12,000 chickens and ducks in a 3 km radius of the index farm in Jeju and 13,400 chickens in North Jeolla have been culled since the confirmation of the virus. Other locations are being tested. The Korean government has prohibited all sales of live poultry in the country as of June 5, 2017 and raised the bird flu warning level. +

+

+ Zimbabwe (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the Seke district in Mashonaland East province, Zimbabwe on May 17, 2017. The event is considered ongoing and the source of the outbreak is currently unknown. The outbreak has caused the death of 7845 birds and the culling of 75,155 birds at one location of a farm with 8 sites and a total of 2 million birds. The sites are over a kilometer away from each other. The outbreak occurred on one site with a parent breeding flock with 83,000 birds. 3.045 of which died within a span of seven days. ?The affected site is close to a small dam where there are a number of different migratory waterfowl, which are tentatively suspected to be source of infection.? This is the first time that HPAI H5N8 has been detected in the country. Control measures applied include movement control inside the country, screening, quarantine, stamping out, zoning, disinfection, vaccination prohibition, and no treatment of affected animals. +

+

+ + Avian Influenza in Humans + +

+

+ China (H7N9) +

+

+ Highly pathogenic H7N9 avian influenza was reported in a man in Bayan Nur City, Wuyuan County, Inner Mongolia on May 31, 2017. This is Mongolia?s first H7N9 confirmed human infection, but the virus is likely to have been in the self-administered region (SAR) earlier because a female farmer who from Ordos, Inner Mongolia but lives in Yulin was infected with the H7N9 virus. According to the patient?s epidemiological history, it is inferred that the source of the infection is possibly poultry. The man is in stable condition. +

+
+

+ + Back + +

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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_06_06.html b/data/flu-report-html/usgs_avian_flu_report_2017_06_06.html new file mode 100644 index 0000000..b60c236 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_06_06.html @@ -0,0 +1,2112 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jun 06, 2017 +

+
+ + newer + +
+

+ News Update June 6, 2017 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ Netherlands (HPAI H5N5) +

+

+ Highly pathogenic H5N5 avian influenza was confirmed from samples from Utrecht on June 1, 2017. The event is considered ongoing and the source of the outbreak is unknown. The outbreak resulted in the death of two wild graylag geese found dead on May 22. Control measures applied include vaccination prohibition and no treatment of affected animals. +

+

+ USA (dogs, Canine H3N2) +

+

+ H3N2 canine influenza was detected by the University of Florida College of Veterinary Medicine on May 31, 2017. Seven dogs have been diagnosed and six others are suspect pending further testing. Common symptoms of dog flu include sneezing, nasal discharge and frequent coughing. According to the CDC, there is no evidence that dog flu can infect humans and the percentage of dogs that die from the virus is small. +

+

+ + Avian Influenza in Poultry + +

+

+ China (HPAI H7N9) +

+

+ Highly pathogenic H7N9 avian influenza was detected in Yulin in Shaanxi province, China on May 23, 2017. The event is ongoing and the source of the outbreak is currently unknown. The outbreak of the virus caused the death of 20,000 chickens at an egg farm with 45,000 birds. Control measures applied include movement control inside the country, screening, quarantine, stamping out, disinfection, and no treatment of affected animals. +

+

+ Congo (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza was detected in the Democratic Republic of Congo on April 25, 2017. The virus has been detected in three locations in Ituri province which borders Uganda where H5N8 was recently reported. The event is considered ongoing and the cause of the virus is currently unknown. The outbreaks have caused the death of over 12,000 birds in the country. Control measures applied include movement control inside the country, quarantine, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ Luxembourg (AI) +

+

+ Detection of avian influenza in Luxembourg has been reported on June 2, 2017. The country has banned the transportation of live poultry for one week in an attempt to limit the spread of the virus to other farms. Luxembourg?s Ministry of Agriculture has called for farmers to report all abnormal poultry deaths to the vet immediately. No further information, such as the subtype of the virus is available at this time and the outbreak has not been reported to OIE. +

+

+ Nigeria (AI, suspect HPAI H5N1) +

+

+ The Federal Ministry of Agriculture and Rural Development of Nigeria reported an outbreak of avian influenza in seven states of the country on June 2, 2017. The states affected by the outbreak include Bauchi, Kaduna, Kano, Katsina, Nasarawa, Plateau, and Federal Capital Territory. The director expressed regret over the poor bio-security practices by some poultry farmers believed to be the cause of the continuing spread of the disease across the country. +

+

+ Russia (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza was detected in the districts of Malopurginsky and Bol?sheboldinsky in the Udmurtia Republic (Udmurtskaya), Russia. The event is considered ongoing and the source of the outbreak is unknown. The virus has caused the death of 282 birds. Control measures applied include movement control, disinfection, screening, quarantine, official disposal of carcasses, stamping out, vaccination prohibition, and no treatment of affected animals. +

+

+ South Korea (H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the province of Jeju and North Jeolla, South Korea. A farmer on Jeju Island had purchased five silkie chickens from a local ?traditional? market and added them to his backyard flock. They all died over the next two days, but the deaths were un-reported until other chickens began to die. HPAI H5N8 was detected in the samples collected from his farm. The silkies originate from a farm in Gunsan, North Jeolla province, which has sold birds to Gyeonggi and South Gyeongsang in addition to Jeju province. Roughly 12,000 chickens and ducks in a 3 km radius of the index farm in Jeju and 13,400 chickens in North Jeolla have been culled since the confirmation of the virus. Other locations are being tested. The Korean government has prohibited all sales of live poultry in the country as of June 5, 2017 and raised the bird flu warning level. +

+

+ Zimbabwe (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the Seke district in Mashonaland East province, Zimbabwe on May 17, 2017. The event is considered ongoing and the source of the outbreak is currently unknown. The outbreak has caused the death of 7845 birds and the culling of 75,155 birds at one location of a farm with 8 sites and a total of 2 million birds. The sites are over a kilometer away from each other. The outbreak occurred on one site with a parent breeding flock with 83,000 birds. 3.045 of which died within a span of seven days. ?The affected site is close to a small dam where there are a number of different migratory waterfowl, which are tentatively suspected to be source of infection.? This is the first time that HPAI H5N8 has been detected in the country. Control measures applied include movement control inside the country, screening, quarantine, stamping out, zoning, disinfection, vaccination prohibition, and no treatment of affected animals. +

+

+ + Avian Influenza in Humans + +

+

+ China (H7N9) +

+

+ Highly pathogenic H7N9 avian influenza was reported in a man in Bayan Nur City, Wuyuan County, Inner Mongolia on May 31, 2017. This is Mongolia?s first H7N9 confirmed human infection, but the virus is likely to have been in the self-administered region (SAR) earlier because a female farmer who from Ordos, Inner Mongolia but lives in Yulin was infected with the H7N9 virus. According to the patient?s epidemiological history, it is inferred that the source of the infection is possibly poultry. The man is in stable condition. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_06_13.html b/data/flu-report-html/usgs_avian_flu_report_2017_06_13.html new file mode 100644 index 0000000..e66779c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_06_13.html @@ -0,0 +1,2076 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jun 13, 2017 +

+
+ + newer + +
+

+ News Update June 13, 2017 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ USA (H3N8) +

+

+ H3N8 canine influenza has been confirmed in 12 cases within Florida. Officials believe the disease spread through dog shows and competitions. Georgia has five confirmed cases of the influenza and is asking show attendees to keep dog cages and equipment at least 20 feet from one another. Additionally, hand sanitizer and gloves will be provided at shows in an attempt to avoid spreading the disease further. Dogs from eight states (Florida, Georgia, Illinois, Kentucky, North and South Carolina, Tennessee and Texas) have tested positive. The best way to prevent the disease is to obtain a canine flu vaccination which doesn’t provide full protection, but will reduce the severity of symptoms. The disease cannot affect humans and is treatable akin to human influenza. +

+

+ + Avian Influenza in Poultry + +

+

+ France (LPAI H7) +

+

+ Low pathogenic LPAI H7 avian influenza was detected in Saulnay, Indre Department, France on May 5, 2017. The H7 virus was found on a rural farm with 4,980 ducks and pheasants. All of the animals have been culled and the outbreak is considered resolved. The source of the outbreak is unknown and control measures applied include screening, traceability, stamping out, zoning, disinfection, vaccination prohibition, and no treatment of affected animals. +

+

+ South Korea (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was reported in Jeju, South Korea on June 7, 2017. Nearly 700 birds in the country’s southern resort island have been culled in order to contain the spread of avian influenza. The farmer had purchased 5 ogol (silkie) chickens from a traditional market on JeJu. The silkies originated from a farm in Gunsan in North Jeolla province, The farm had also shipped potentially infected birds to a number of other provinces. As of Jun 10, 33 farms have in at least 6 cities and provinces have tested positive for avian influenza and 12 confirmed infected with H5N8. Officials have already culled more than 144,000 poultry to control this outbreak. South Korea is attempting to contain the spread of the highly pathogenic H5N8 virus and a two week ban on the sale of live poultry has been imposed. The event should be considered ongoing. +

+

+ + Avian Influenza in Humans + +

+

+ China (H7N9) +

+

+ China’s National Health & Family Planning Commission released its lasted monthly report on infectious diseases across mainland China. Highly pathogenic H7N9 avian influenza in May, 2017 resulted in 72 human infections with 27 deaths. May’s numbers are roughly 5 times higher than any previous month of May since the H7N9 virus emerged in 2013. For the sixth month in a row, China reports no H5 human infections. +

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_06_27.html b/data/flu-report-html/usgs_avian_flu_report_2017_06_27.html new file mode 100644 index 0000000..922f16d --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_06_27.html @@ -0,0 +1,2077 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jun 27, 2017 +

+
+ + newer + +
+

+ News Update June 27, 2017 +

+
+

+ + Avian Influenza in Wild Animals + +

+

+ Finland (H5) +

+

+ Highly pathogenic H5 avian influenza was detected in Sastamala, Western Finland Province (Lansi-Ja Sisa-Suomi) on June 2, 2017. The virus resulted in the culling of one whooper swan that was collected on May 26. The source of the outbreak is unknown and the event is considered resolved. Control measured applied include screening, vaccination prohibition, and no treatment of affected animals. +

+

+ + Avian Influenza in Poultry + +

+

+ Belgium (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in Maffle, Belgium on June 20, 2017. The outbreak caused the death of 57 birds and the additional culling of 110. The outbreak was caused by the introduction of new live animals. The event is considered ongoing and control measures applied include surveillance outside containment, traceability, stamping out, control of wildlife reservoirs, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ South Africa (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in Dipaleseng, South Africa on June 22, 2017. The outbreak resulted in the death of 5,000 birds and over 25,000 will be culled. The facility has 12 self-contained units with a total of 285,000 birds. Only a single unit with 24,000 birds is affected. A ban on the sale of live poultry was imposed for two weeks. The source of the outbreak is unknown and the event is considered ongoing. Control measured applied include surveillance within containment, traceability, quarantine, vaccination prohibition, and no treatment of affected animals. +

+

+ South Korea (HPAI H5N8 and unknown HPAI) +

+

+ Highly pathogenic H5N8 and an uncharacterized strain of HPAI avian influenza were confirmed in nine outbreaks within South Korea. The animals affected include 5 mallards, 2 grey herons, 3 greater white-fronted geese, 1 great egret, and 1 falcated duck. The outbreak is attributed to movements of animals and the event is considered ongoing. +

+

+ Taiwan (HPAI H5N2) +

+

+ Highly pathogenic H5N2 avian influenza was confirmed in Taipei, Taiwan on June 23, 2017. Six total outbreaks were confirmed and over 55,000 birds have been culled. The source of the outbreak is unknown and the event is considered ongoing. Control measures applied include movement control inside the country, screening, quarantine, stamping out, zoning, vaccination prohibition, and no treatment of affected animals. The animal inspection authorities have said they strengthened quarantine and sanitation measures on nearby farms to prevent further infections. +

+
+

+ + Back + +

+
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+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_07_05.html b/data/flu-report-html/usgs_avian_flu_report_2017_07_05.html new file mode 100644 index 0000000..7c83c2c --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_07_05.html @@ -0,0 +1,2063 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jul 05, 2017 +

+
+ + newer + +
+

+ News Update July 5, 2017 +

+

+ + Avian Influenza in Wild Animals + +

+

+ USA (H3N8) +

+

+ H3N8 canine influenza has been confirmed in 4 cases in Greene county, Tennessee. The illness in three dogs is believed to have originated at a dog show in Perry, Georgia. Cases have been detected in a total of eight (FL, GA, IL, KY, SC, NC, TN and TX) states so far in the current outbreak. Canine influenza is spread through nasal or lung secretions typically via sneezing or coughing. Canine influenza is not known to cause illness in humans. The Tennessee state veterinarian suggests making sure your dog is up-to-date on vaccinations, washing your hands after contact with any dogs, avoiding co-mingling dogs, not sharing equipment or toys between dogs, and immediately isolating any dog that shows signs of illness and contacting your veterinarian. +

+

+ + Avian Influenza in Poultry + +

+

+ Belgium (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza has been confirmed in Trazegnies, Belgium on June 1, 2017. The virus has resulted in the death of 57 birds and an additional 29 being culled. The event is considered ongoing and the source of the outbreak is attributed to the introduction of new live animals. Control measured applied include surveillance outside and within the protection zone, traceability, official destruction of animal products, official disposal of carcasses, stamping gout, control of wildlife reservoirs, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ France (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza has been reported in the northern Brillon region of France on June 30, 2017. The farm is located only 8 miles from where a confirmed outbreak of the same virus occurred in Belgium in June 2017. France?s agriculture ministry said a protection and surveillance zone was set up immediately to stop the spread of the virus. Additionally, movement of all susceptible animals is prohibited and bio-security measures have been reinforced. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_07_14.html b/data/flu-report-html/usgs_avian_flu_report_2017_07_14.html new file mode 100644 index 0000000..6631baa --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_07_14.html @@ -0,0 +1,2078 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Jul 14, 2017 +

+
+ + newer + +
+

+ + + News Update July 14, 2017 + + +

+

+ + Avian Influenza in Wild Animals + +

+

+ USA (Canine Influenza) +

+

+ The Centers for Disease Control and Prevention said that two strains of the virus including H3N8 and H3N2 can infect dogs. The virus is not known to infect humans but it can infect cats. The H3N8 strain originated in horses and was first identified in greyhounds in Florida in 2004. The H3N8 strain is the cause of a multi-state outbreak in dogs this summer centered on the southern states. But on July 6, 2017, 32 cases were confirmed in Minnesota. The H3N2 strain originated in birds and eventually adapted to infect dogs. It was identified for the first time in dogs in 2007 in South Korea and was found in the United States in 2015. Signs that a dog is infected include cough, runny nose, fever, lethargy, eye discharge, and reduced appetite. Canine influenza spreads through the air or virus cells left on surfaces. A vaccine is available for both strains of canine influenza in the United States. +

+

+ + Avian Influenza in Poultry + +

+

+ Taiwan (HPAI H5) +

+

+ Highly pathogenic H5N2 avian influenza has been confirmed in Taiwan on July 3, 2017. The virus has caused the death of 5,899 birds and culling of over 47,000 since June 27, 2017. The outbreak occurred on poultry farms in Tainan City, Yunlin County and Pingtung County. Ducks, turkeys, geese, and native chickens were infected and all of the farms have been placed under movement restriction. The source of the outbreak is unknown and the event is considered ongoing. Control measured applied include movement control inside the country, disinfection, screening, quarantine, stamping out, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ Togo (HPAI H5N1) +

+

+ Highly pathogenic H5N1 avian influenza has been confirmed in Maritime Region (province), Togo on July 3, 2017. The outbreak caused the death of 3,448 birds and the culling of an additional 152 according to media reports but 3,448 birds are listed as having died on a layer farm with a total of 35,000 birds according to the official report to the World Organization for Animal Health (OIE). The source of the outbreak is unknown and the event is considered ongoing. Control measures applied included movement control inside the country, quarantine, disinfection, culling, vaccination prohibition, and no treatment of affected animals. +

+

+ + Avian Influenza in Humans + +

+

+ China (H7N9) +

+

+ China?s National Health and Family Planning Commission reported on July 6, 2017 that one additional human case of highly pathogenic H7N9 avian influenza has occurred in the XinJiang Uygur Autonomous Region. The patient passed away on June 30 and was known to have sold chickens at market. China?s Centre for Health Protection (CHP) advises travelers to avoid visiting wet markets, purchasing live or freshly slaughtered poultry, and cooking eggs thoroughly before consumption. Strict observation of personal hygiene should be taken around poultry. +

+
+

+ + Back + +

+
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+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_08_25.html b/data/flu-report-html/usgs_avian_flu_report_2017_08_25.html new file mode 100644 index 0000000..5d423b3 --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_08_25.html @@ -0,0 +1,2067 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
+ +
+ + + + + + + +
+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Aug 25, 2017 +

+
+ + newer + +
+

+ News Update August 25, 2017 +

+

+ Avian Influenza in Poultry +

+

+ China (HPAI H5N6) +

+

+ Highly pathogenic H5N6 avian influenza was reported in Guizhou Province, China on August 18, 2017. The outbreak of the virus resulted in the culling of 8,100 birds. China’s Ministry and Agriculture reported that the outbreak is now under control. +

+

+ Philippines (HPAI H5) +

+

+ Highly pathogenic H5 avian influenza was reported in the Nueva Ecija Province, Philippines on August 18, 2017. The Philippines Bureau of Animal Industry reported the cases in the farming towns of Jaen and San Isidro. The virus resulted in the infection of 200,000 quails, 57,000 native chickens, 28,000 egg-laying chickens, and 22,000 ducks. A 7 kilometer quarantine zone was declared around both sites. The cases were immediately reported and the birds will be culled. +

+

+ South Africa (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the Mpumalanga and Kwazulu-Natal Provinces of South Africa on August 22, 2017. The virus resulted in the death of 93 birds and the culling of an additional 50,135 birds. The outbreak is considered ongoing and the source of the outbreak is considered unknown. Control measures applied include surveillance within the containment zone, traceability, quarantine, vaccination prohibition, and no treatment of affected animals. +

+

+ Avian Influenza in Humans +

+

+

+

+ China (H9N2) +

+

+ Highly pathogenic H9N2 avian influenza was reported in the Guangdong province of China on August 16, 2017. The virus was detected in a two year old child who was in contact with poultry prior to detection. The child’s condition is now considered stable. This strain of bird flu has infected two other people this year. China also faces an epidemic from the H7N9 strain of bird flu. +

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+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +

+
+ + +
+ + diff --git a/data/flu-report-html/usgs_avian_flu_report_2017_09_28.html b/data/flu-report-html/usgs_avian_flu_report_2017_09_28.html new file mode 100644 index 0000000..cffd50a --- /dev/null +++ b/data/flu-report-html/usgs_avian_flu_report_2017_09_28.html @@ -0,0 +1,2064 @@ + + + + + USGS National Wildlife Health Center - Avian Influenza Archive + + + + + + + + + + + + + + + + +
+ +
+
+ +

+ National Wildlife Health Center +

+

+ ...advancing wildlife and ecosystem health +

+
+
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+ + + + + + + + + + + + + + + +
+ +
+ + older + + +

+ Avian Influenza Archive from Sep 28, 2017 +

+
+
+

+ News Update September 28, 2017 +

+
+

+ Avian Influenza in Wild Animals +

+

+ Switzerland (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in Port Valais and Fribourg, Switzerland on August 25, 2017. The outbreak caused the death of three Mute swans and two mallards. The source of the outbreak is unknown and is considered resolved. Control measures applied include surveillance within the containment zone, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ Avian Influenza in Poultry +

+

+ Italy (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in Padova, Italy on September 19, 2017. The outbreak caused the death of 92 birds and the additional culling of 1,332. The source of the outbreak is unknown and is considered ongoing. Control measures applied include movement control within the country, screening, traceability, official disposal, stamping out, zoning, vaccination prohibition, and no treatment of affected animals. +

+

+ Nigeria (possible H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was reported in the Oluyole area of Nigeria on September 12, 2017. The hatchery where the virus was found has been shut down and stopped from doing any business going forward. Containment measures will be applied once the test results are confirmed. +

+

+ South Africa (HPAI H5N8) +

+

+ Highly pathogenic H5N8 avian influenza was detected in the Maquassi Hills, South Africa on September 1, 2017.   This virus infected 132 birds and an additional 54,000 are believed to be susceptible. The source of the outbreak is unknown and is considered ongoing. Control measures applied include surveillance within the containment zone, traceability, quarantine, vaccination prohibition, and no treatment of affected animals. +

+
+

+ + Back + +

+
+ + +
+ + +

+ + Accessibility + + + FOIA + + + Privacy + + + Policies and Notices + +

+

+ + U.S. Department of the Interior + + | + + U.S. Geological Survey + +
+ URL: http://www.nwhc.usgs.gov +
+ Page Contact Information: + + Contact Form + +
+ Page Last Modified: +May 19, 2016 +
+

+
+ + +
+ + diff --git a/flu-report-json/usgs_avian_flu_report_2006_11_07.json b/data/flu-report-json/usgs_avian_flu_report_2006_11_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2006_11_07.json rename to data/flu-report-json/usgs_avian_flu_report_2006_11_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2006_11_14.json b/data/flu-report-json/usgs_avian_flu_report_2006_11_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2006_11_14.json rename to data/flu-report-json/usgs_avian_flu_report_2006_11_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2006_12_01.json b/data/flu-report-json/usgs_avian_flu_report_2006_12_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2006_12_01.json rename to data/flu-report-json/usgs_avian_flu_report_2006_12_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2006_12_04.json b/data/flu-report-json/usgs_avian_flu_report_2006_12_04.json similarity 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diff --git a/flu-report-json/usgs_avian_flu_report_2007_01_08.json b/data/flu-report-json/usgs_avian_flu_report_2007_01_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_01_08.json rename to data/flu-report-json/usgs_avian_flu_report_2007_01_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_01_18.json b/data/flu-report-json/usgs_avian_flu_report_2007_01_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_01_18.json rename to data/flu-report-json/usgs_avian_flu_report_2007_01_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_01_22.json b/data/flu-report-json/usgs_avian_flu_report_2007_01_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_01_22.json rename to data/flu-report-json/usgs_avian_flu_report_2007_01_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_02_07.json b/data/flu-report-json/usgs_avian_flu_report_2007_02_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_02_07.json rename to data/flu-report-json/usgs_avian_flu_report_2007_02_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_02_16.json b/data/flu-report-json/usgs_avian_flu_report_2007_02_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_02_16.json rename to data/flu-report-json/usgs_avian_flu_report_2007_02_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_03_08.json b/data/flu-report-json/usgs_avian_flu_report_2007_03_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_03_08.json rename to data/flu-report-json/usgs_avian_flu_report_2007_03_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_03_20.json b/data/flu-report-json/usgs_avian_flu_report_2007_03_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_03_20.json rename to data/flu-report-json/usgs_avian_flu_report_2007_03_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_03_23.json b/data/flu-report-json/usgs_avian_flu_report_2007_03_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_03_23.json rename to data/flu-report-json/usgs_avian_flu_report_2007_03_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_04_02.json b/data/flu-report-json/usgs_avian_flu_report_2007_04_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_04_02.json rename to data/flu-report-json/usgs_avian_flu_report_2007_04_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_04_06.json b/data/flu-report-json/usgs_avian_flu_report_2007_04_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_04_06.json rename to data/flu-report-json/usgs_avian_flu_report_2007_04_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_04_16.json b/data/flu-report-json/usgs_avian_flu_report_2007_04_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_04_16.json rename to data/flu-report-json/usgs_avian_flu_report_2007_04_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_04_23.json b/data/flu-report-json/usgs_avian_flu_report_2007_04_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_04_23.json rename to data/flu-report-json/usgs_avian_flu_report_2007_04_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_05_03.json b/data/flu-report-json/usgs_avian_flu_report_2007_05_03.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_05_03.json rename to data/flu-report-json/usgs_avian_flu_report_2007_05_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2007_05_11.json b/data/flu-report-json/usgs_avian_flu_report_2007_05_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2007_05_11.json rename to data/flu-report-json/usgs_avian_flu_report_2007_05_11.json diff --git 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rename from data/development-data/usgs_avian_flu_report_2008_02_22.json rename to data/flu-report-json/usgs_avian_flu_report_2008_02_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_03_03.json b/data/flu-report-json/usgs_avian_flu_report_2008_03_03.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_03_03.json rename to data/flu-report-json/usgs_avian_flu_report_2008_03_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_03_07.json b/data/flu-report-json/usgs_avian_flu_report_2008_03_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_03_07.json rename to data/flu-report-json/usgs_avian_flu_report_2008_03_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_03_14.json b/data/flu-report-json/usgs_avian_flu_report_2008_03_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_03_14.json rename to data/flu-report-json/usgs_avian_flu_report_2008_03_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_03_27.json b/data/flu-report-json/usgs_avian_flu_report_2008_03_27.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_03_27.json rename to data/flu-report-json/usgs_avian_flu_report_2008_03_27.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_03_28.json b/data/flu-report-json/usgs_avian_flu_report_2008_03_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_03_28.json rename to data/flu-report-json/usgs_avian_flu_report_2008_03_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_04_03.json b/data/flu-report-json/usgs_avian_flu_report_2008_04_03.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_04_03.json rename to data/flu-report-json/usgs_avian_flu_report_2008_04_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_04_15.json b/data/flu-report-json/usgs_avian_flu_report_2008_04_15.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_04_15.json rename to data/flu-report-json/usgs_avian_flu_report_2008_04_15.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_04_18.json b/data/flu-report-json/usgs_avian_flu_report_2008_04_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_04_18.json rename to data/flu-report-json/usgs_avian_flu_report_2008_04_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_04_30.json b/data/flu-report-json/usgs_avian_flu_report_2008_04_30.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_04_30.json rename to data/flu-report-json/usgs_avian_flu_report_2008_04_30.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_05_02.json b/data/flu-report-json/usgs_avian_flu_report_2008_05_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_05_02.json rename to data/flu-report-json/usgs_avian_flu_report_2008_05_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_05_09.json b/data/flu-report-json/usgs_avian_flu_report_2008_05_09.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_05_09.json rename to data/flu-report-json/usgs_avian_flu_report_2008_05_09.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_05_16.json b/data/flu-report-json/usgs_avian_flu_report_2008_05_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_05_16.json rename to data/flu-report-json/usgs_avian_flu_report_2008_05_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_05_23.json b/data/flu-report-json/usgs_avian_flu_report_2008_05_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_05_23.json rename to data/flu-report-json/usgs_avian_flu_report_2008_05_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_06_02.json b/data/flu-report-json/usgs_avian_flu_report_2008_06_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_06_02.json rename to data/flu-report-json/usgs_avian_flu_report_2008_06_02.json diff --git a/data/development-data/usgs_avian_flu_report_2008_06_06.json b/data/flu-report-json/usgs_avian_flu_report_2008_06_06.json similarity index 100% rename from data/development-data/usgs_avian_flu_report_2008_06_06.json rename to data/flu-report-json/usgs_avian_flu_report_2008_06_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_06_13.json b/data/flu-report-json/usgs_avian_flu_report_2008_06_13.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_06_13.json rename to data/flu-report-json/usgs_avian_flu_report_2008_06_13.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_06_19.json b/data/flu-report-json/usgs_avian_flu_report_2008_06_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_06_19.json rename to data/flu-report-json/usgs_avian_flu_report_2008_06_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_06_26.json b/data/flu-report-json/usgs_avian_flu_report_2008_06_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_06_26.json rename to data/flu-report-json/usgs_avian_flu_report_2008_06_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_07_02.json b/data/flu-report-json/usgs_avian_flu_report_2008_07_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_07_02.json rename to data/flu-report-json/usgs_avian_flu_report_2008_07_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_07_10.json b/data/flu-report-json/usgs_avian_flu_report_2008_07_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_07_10.json rename to data/flu-report-json/usgs_avian_flu_report_2008_07_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_07_18.json b/data/flu-report-json/usgs_avian_flu_report_2008_07_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_07_18.json rename to data/flu-report-json/usgs_avian_flu_report_2008_07_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_07_25.json b/data/flu-report-json/usgs_avian_flu_report_2008_07_25.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_07_25.json rename to data/flu-report-json/usgs_avian_flu_report_2008_07_25.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_08_01.json b/data/flu-report-json/usgs_avian_flu_report_2008_08_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_08_01.json rename to data/flu-report-json/usgs_avian_flu_report_2008_08_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_08_11.json b/data/flu-report-json/usgs_avian_flu_report_2008_08_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_08_11.json rename to data/flu-report-json/usgs_avian_flu_report_2008_08_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_08_15.json b/data/flu-report-json/usgs_avian_flu_report_2008_08_15.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_08_15.json rename to data/flu-report-json/usgs_avian_flu_report_2008_08_15.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_08_22.json b/data/flu-report-json/usgs_avian_flu_report_2008_08_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_08_22.json rename to data/flu-report-json/usgs_avian_flu_report_2008_08_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_08_28.json b/data/flu-report-json/usgs_avian_flu_report_2008_08_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_08_28.json rename to data/flu-report-json/usgs_avian_flu_report_2008_08_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_09_08.json b/data/flu-report-json/usgs_avian_flu_report_2008_09_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_09_08.json rename to data/flu-report-json/usgs_avian_flu_report_2008_09_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_09_11.json b/data/flu-report-json/usgs_avian_flu_report_2008_09_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_09_11.json rename to data/flu-report-json/usgs_avian_flu_report_2008_09_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_09_18.json b/data/flu-report-json/usgs_avian_flu_report_2008_09_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_09_18.json rename to data/flu-report-json/usgs_avian_flu_report_2008_09_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_09_26.json b/data/flu-report-json/usgs_avian_flu_report_2008_09_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_09_26.json rename to data/flu-report-json/usgs_avian_flu_report_2008_09_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_10_02.json b/data/flu-report-json/usgs_avian_flu_report_2008_10_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_10_02.json rename to data/flu-report-json/usgs_avian_flu_report_2008_10_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_10_09.json b/data/flu-report-json/usgs_avian_flu_report_2008_10_09.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_10_09.json rename to data/flu-report-json/usgs_avian_flu_report_2008_10_09.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_10_16.json b/data/flu-report-json/usgs_avian_flu_report_2008_10_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_10_16.json rename to data/flu-report-json/usgs_avian_flu_report_2008_10_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_10_24.json b/data/flu-report-json/usgs_avian_flu_report_2008_10_24.json similarity index 100% rename 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--git a/flu-report-json/usgs_avian_flu_report_2008_11_26.json b/data/flu-report-json/usgs_avian_flu_report_2008_11_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_11_26.json rename to data/flu-report-json/usgs_avian_flu_report_2008_11_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2008_12_12.json b/data/flu-report-json/usgs_avian_flu_report_2008_12_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2008_12_12.json rename to data/flu-report-json/usgs_avian_flu_report_2008_12_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_01_14.json b/data/flu-report-json/usgs_avian_flu_report_2009_01_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_01_14.json rename to data/flu-report-json/usgs_avian_flu_report_2009_01_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_01_21.json b/data/flu-report-json/usgs_avian_flu_report_2009_01_21.json similarity index 100% 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a/flu-report-json/usgs_avian_flu_report_2009_02_23.json b/data/flu-report-json/usgs_avian_flu_report_2009_02_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_02_23.json rename to data/flu-report-json/usgs_avian_flu_report_2009_02_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_03_02.json b/data/flu-report-json/usgs_avian_flu_report_2009_03_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_03_02.json rename to data/flu-report-json/usgs_avian_flu_report_2009_03_02.json diff --git a/data/development-data/usgs_avian_flu_report_2009_03_10.json b/data/flu-report-json/usgs_avian_flu_report_2009_03_10.json similarity index 100% rename from data/development-data/usgs_avian_flu_report_2009_03_10.json rename to data/flu-report-json/usgs_avian_flu_report_2009_03_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_03_17.json b/data/flu-report-json/usgs_avian_flu_report_2009_03_17.json similarity index 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--git a/flu-report-json/usgs_avian_flu_report_2009_04_14.json b/data/flu-report-json/usgs_avian_flu_report_2009_04_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_04_14.json rename to data/flu-report-json/usgs_avian_flu_report_2009_04_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_04_20.json b/data/flu-report-json/usgs_avian_flu_report_2009_04_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_04_20.json rename to data/flu-report-json/usgs_avian_flu_report_2009_04_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_04_28.json b/data/flu-report-json/usgs_avian_flu_report_2009_04_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_04_28.json rename to data/flu-report-json/usgs_avian_flu_report_2009_04_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_05_01.json b/data/flu-report-json/usgs_avian_flu_report_2009_05_01.json similarity index 100% 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a/flu-report-json/usgs_avian_flu_report_2009_05_22.json b/data/flu-report-json/usgs_avian_flu_report_2009_05_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_05_22.json rename to data/flu-report-json/usgs_avian_flu_report_2009_05_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_06_01.json b/data/flu-report-json/usgs_avian_flu_report_2009_06_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_06_01.json rename to data/flu-report-json/usgs_avian_flu_report_2009_06_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_06_05.json b/data/flu-report-json/usgs_avian_flu_report_2009_06_05.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_06_05.json rename to data/flu-report-json/usgs_avian_flu_report_2009_06_05.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_06_12.json b/data/flu-report-json/usgs_avian_flu_report_2009_06_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_06_12.json rename to data/flu-report-json/usgs_avian_flu_report_2009_06_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_06_19.json b/data/flu-report-json/usgs_avian_flu_report_2009_06_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_06_19.json rename to data/flu-report-json/usgs_avian_flu_report_2009_06_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_06_29.json b/data/flu-report-json/usgs_avian_flu_report_2009_06_29.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_06_29.json rename to data/flu-report-json/usgs_avian_flu_report_2009_06_29.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_07_02.json b/data/flu-report-json/usgs_avian_flu_report_2009_07_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_07_02.json rename to data/flu-report-json/usgs_avian_flu_report_2009_07_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_07_10.json b/data/flu-report-json/usgs_avian_flu_report_2009_07_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_07_10.json rename to data/flu-report-json/usgs_avian_flu_report_2009_07_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_07_21.json b/data/flu-report-json/usgs_avian_flu_report_2009_07_21.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_07_21.json rename to data/flu-report-json/usgs_avian_flu_report_2009_07_21.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_07_24.json b/data/flu-report-json/usgs_avian_flu_report_2009_07_24.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_07_24.json rename to data/flu-report-json/usgs_avian_flu_report_2009_07_24.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_08_03.json b/data/flu-report-json/usgs_avian_flu_report_2009_08_03.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_08_03.json rename to data/flu-report-json/usgs_avian_flu_report_2009_08_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_08_07.json b/data/flu-report-json/usgs_avian_flu_report_2009_08_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_08_07.json rename to data/flu-report-json/usgs_avian_flu_report_2009_08_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_08_28.json b/data/flu-report-json/usgs_avian_flu_report_2009_08_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_08_28.json rename to data/flu-report-json/usgs_avian_flu_report_2009_08_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_09_01.json b/data/flu-report-json/usgs_avian_flu_report_2009_09_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_09_01.json rename to data/flu-report-json/usgs_avian_flu_report_2009_09_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_09_08.json b/data/flu-report-json/usgs_avian_flu_report_2009_09_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_09_08.json rename to data/flu-report-json/usgs_avian_flu_report_2009_09_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_09_14.json b/data/flu-report-json/usgs_avian_flu_report_2009_09_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_09_14.json rename to data/flu-report-json/usgs_avian_flu_report_2009_09_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_09_21.json b/data/flu-report-json/usgs_avian_flu_report_2009_09_21.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_09_21.json rename to data/flu-report-json/usgs_avian_flu_report_2009_09_21.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_09_25.json b/data/flu-report-json/usgs_avian_flu_report_2009_09_25.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_09_25.json rename to data/flu-report-json/usgs_avian_flu_report_2009_09_25.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_10_22.json b/data/flu-report-json/usgs_avian_flu_report_2009_10_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_10_22.json rename to data/flu-report-json/usgs_avian_flu_report_2009_10_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_10_27.json b/data/flu-report-json/usgs_avian_flu_report_2009_10_27.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_10_27.json rename to data/flu-report-json/usgs_avian_flu_report_2009_10_27.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_11_06.json b/data/flu-report-json/usgs_avian_flu_report_2009_11_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_11_06.json rename to data/flu-report-json/usgs_avian_flu_report_2009_11_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_11_20.json b/data/flu-report-json/usgs_avian_flu_report_2009_11_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_11_20.json rename to data/flu-report-json/usgs_avian_flu_report_2009_11_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_11_30.json b/data/flu-report-json/usgs_avian_flu_report_2009_11_30.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_11_30.json rename to data/flu-report-json/usgs_avian_flu_report_2009_11_30.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_12_14.json b/data/flu-report-json/usgs_avian_flu_report_2009_12_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_12_14.json rename to data/flu-report-json/usgs_avian_flu_report_2009_12_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2009_12_22.json b/data/flu-report-json/usgs_avian_flu_report_2009_12_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2009_12_22.json rename to data/flu-report-json/usgs_avian_flu_report_2009_12_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_01_12.json b/data/flu-report-json/usgs_avian_flu_report_2010_01_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_01_12.json rename to data/flu-report-json/usgs_avian_flu_report_2010_01_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_01_20.json b/data/flu-report-json/usgs_avian_flu_report_2010_01_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_01_20.json rename to data/flu-report-json/usgs_avian_flu_report_2010_01_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_01_27.json b/data/flu-report-json/usgs_avian_flu_report_2010_01_27.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_01_27.json rename to data/flu-report-json/usgs_avian_flu_report_2010_01_27.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_02_03.json b/data/flu-report-json/usgs_avian_flu_report_2010_02_03.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_02_03.json rename to data/flu-report-json/usgs_avian_flu_report_2010_02_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_02_19.json b/data/flu-report-json/usgs_avian_flu_report_2010_02_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_02_19.json rename to data/flu-report-json/usgs_avian_flu_report_2010_02_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_03_01.json b/data/flu-report-json/usgs_avian_flu_report_2010_03_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_03_01.json rename to data/flu-report-json/usgs_avian_flu_report_2010_03_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_03_09.json b/data/flu-report-json/usgs_avian_flu_report_2010_03_09.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_03_09.json rename to data/flu-report-json/usgs_avian_flu_report_2010_03_09.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_03_11.json b/data/flu-report-json/usgs_avian_flu_report_2010_03_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_03_11.json rename to data/flu-report-json/usgs_avian_flu_report_2010_03_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_03_19.json b/data/flu-report-json/usgs_avian_flu_report_2010_03_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_03_19.json rename to data/flu-report-json/usgs_avian_flu_report_2010_03_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_03_26.json b/data/flu-report-json/usgs_avian_flu_report_2010_03_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_03_26.json rename to data/flu-report-json/usgs_avian_flu_report_2010_03_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_04_02.json b/data/flu-report-json/usgs_avian_flu_report_2010_04_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_04_02.json rename to data/flu-report-json/usgs_avian_flu_report_2010_04_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_04_12.json b/data/flu-report-json/usgs_avian_flu_report_2010_04_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_04_12.json rename to data/flu-report-json/usgs_avian_flu_report_2010_04_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_04_19.json b/data/flu-report-json/usgs_avian_flu_report_2010_04_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_04_19.json rename to data/flu-report-json/usgs_avian_flu_report_2010_04_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_04_26.json b/data/flu-report-json/usgs_avian_flu_report_2010_04_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_04_26.json rename to data/flu-report-json/usgs_avian_flu_report_2010_04_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_05_04.json b/data/flu-report-json/usgs_avian_flu_report_2010_05_04.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_05_04.json rename to data/flu-report-json/usgs_avian_flu_report_2010_05_04.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_05_10.json b/data/flu-report-json/usgs_avian_flu_report_2010_05_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_05_10.json rename to data/flu-report-json/usgs_avian_flu_report_2010_05_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_05_17.json b/data/flu-report-json/usgs_avian_flu_report_2010_05_17.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_05_17.json rename to data/flu-report-json/usgs_avian_flu_report_2010_05_17.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_05_28.json b/data/flu-report-json/usgs_avian_flu_report_2010_05_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_05_28.json rename to data/flu-report-json/usgs_avian_flu_report_2010_05_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_06_07.json b/data/flu-report-json/usgs_avian_flu_report_2010_06_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_06_07.json rename to data/flu-report-json/usgs_avian_flu_report_2010_06_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_06_11.json b/data/flu-report-json/usgs_avian_flu_report_2010_06_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_06_11.json rename to data/flu-report-json/usgs_avian_flu_report_2010_06_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_06_29.json b/data/flu-report-json/usgs_avian_flu_report_2010_06_29.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_06_29.json rename to data/flu-report-json/usgs_avian_flu_report_2010_06_29.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_07_02.json b/data/flu-report-json/usgs_avian_flu_report_2010_07_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_07_02.json rename to data/flu-report-json/usgs_avian_flu_report_2010_07_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_07_12.json b/data/flu-report-json/usgs_avian_flu_report_2010_07_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_07_12.json rename to data/flu-report-json/usgs_avian_flu_report_2010_07_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_07_16.json b/data/flu-report-json/usgs_avian_flu_report_2010_07_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_07_16.json rename to data/flu-report-json/usgs_avian_flu_report_2010_07_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_07_23.json b/data/flu-report-json/usgs_avian_flu_report_2010_07_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_07_23.json rename to data/flu-report-json/usgs_avian_flu_report_2010_07_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_07_30.json b/data/flu-report-json/usgs_avian_flu_report_2010_07_30.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_07_30.json rename to data/flu-report-json/usgs_avian_flu_report_2010_07_30.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_08_06.json b/data/flu-report-json/usgs_avian_flu_report_2010_08_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_08_06.json rename to data/flu-report-json/usgs_avian_flu_report_2010_08_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_08_16.json b/data/flu-report-json/usgs_avian_flu_report_2010_08_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_08_16.json rename to data/flu-report-json/usgs_avian_flu_report_2010_08_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_08_18.json b/data/flu-report-json/usgs_avian_flu_report_2010_08_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_08_18.json rename to data/flu-report-json/usgs_avian_flu_report_2010_08_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_08_20.json b/data/flu-report-json/usgs_avian_flu_report_2010_08_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_08_20.json rename to data/flu-report-json/usgs_avian_flu_report_2010_08_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_08_26.json b/data/flu-report-json/usgs_avian_flu_report_2010_08_26.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_08_26.json rename to data/flu-report-json/usgs_avian_flu_report_2010_08_26.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_09_09.json b/data/flu-report-json/usgs_avian_flu_report_2010_09_09.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_09_09.json rename to data/flu-report-json/usgs_avian_flu_report_2010_09_09.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_09_10.json b/data/flu-report-json/usgs_avian_flu_report_2010_09_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_09_10.json rename to data/flu-report-json/usgs_avian_flu_report_2010_09_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_09_17.json b/data/flu-report-json/usgs_avian_flu_report_2010_09_17.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_09_17.json rename to data/flu-report-json/usgs_avian_flu_report_2010_09_17.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_09_24.json b/data/flu-report-json/usgs_avian_flu_report_2010_09_24.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_09_24.json rename to data/flu-report-json/usgs_avian_flu_report_2010_09_24.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_10_01.json b/data/flu-report-json/usgs_avian_flu_report_2010_10_01.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_10_01.json rename to data/flu-report-json/usgs_avian_flu_report_2010_10_01.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_10_08.json b/data/flu-report-json/usgs_avian_flu_report_2010_10_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_10_08.json rename to data/flu-report-json/usgs_avian_flu_report_2010_10_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_10_15.json b/data/flu-report-json/usgs_avian_flu_report_2010_10_15.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_10_15.json rename to data/flu-report-json/usgs_avian_flu_report_2010_10_15.json diff --git 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from flu-report-json/usgs_avian_flu_report_2010_12_03.json rename to data/flu-report-json/usgs_avian_flu_report_2010_12_03.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_12_09.json b/data/flu-report-json/usgs_avian_flu_report_2010_12_09.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_12_09.json rename to data/flu-report-json/usgs_avian_flu_report_2010_12_09.json diff --git a/flu-report-json/usgs_avian_flu_report_2010_12_17.json b/data/flu-report-json/usgs_avian_flu_report_2010_12_17.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2010_12_17.json rename to data/flu-report-json/usgs_avian_flu_report_2010_12_17.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_01_14.json b/data/flu-report-json/usgs_avian_flu_report_2011_01_14.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_01_14.json rename to data/flu-report-json/usgs_avian_flu_report_2011_01_14.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_01_24.json b/data/flu-report-json/usgs_avian_flu_report_2011_01_24.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_01_24.json rename to data/flu-report-json/usgs_avian_flu_report_2011_01_24.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_01_28.json b/data/flu-report-json/usgs_avian_flu_report_2011_01_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_01_28.json rename to data/flu-report-json/usgs_avian_flu_report_2011_01_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_02_08.json b/data/flu-report-json/usgs_avian_flu_report_2011_02_08.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_02_08.json rename to data/flu-report-json/usgs_avian_flu_report_2011_02_08.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_02_11.json b/data/flu-report-json/usgs_avian_flu_report_2011_02_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_02_11.json rename to data/flu-report-json/usgs_avian_flu_report_2011_02_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_02_22.json b/data/flu-report-json/usgs_avian_flu_report_2011_02_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_02_22.json rename to data/flu-report-json/usgs_avian_flu_report_2011_02_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_02_28.json b/data/flu-report-json/usgs_avian_flu_report_2011_02_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_02_28.json rename to data/flu-report-json/usgs_avian_flu_report_2011_02_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_03_07.json b/data/flu-report-json/usgs_avian_flu_report_2011_03_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_03_07.json rename to data/flu-report-json/usgs_avian_flu_report_2011_03_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_03_15.json b/data/flu-report-json/usgs_avian_flu_report_2011_03_15.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_03_15.json rename to data/flu-report-json/usgs_avian_flu_report_2011_03_15.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_03_22.json b/data/flu-report-json/usgs_avian_flu_report_2011_03_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_03_22.json rename to data/flu-report-json/usgs_avian_flu_report_2011_03_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_03_29.json b/data/flu-report-json/usgs_avian_flu_report_2011_03_29.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_03_29.json rename to data/flu-report-json/usgs_avian_flu_report_2011_03_29.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_04_05.json b/data/flu-report-json/usgs_avian_flu_report_2011_04_05.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_04_05.json rename to data/flu-report-json/usgs_avian_flu_report_2011_04_05.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_04_12.json b/data/flu-report-json/usgs_avian_flu_report_2011_04_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_04_12.json rename to data/flu-report-json/usgs_avian_flu_report_2011_04_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_04_28.json b/data/flu-report-json/usgs_avian_flu_report_2011_04_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_04_28.json rename to data/flu-report-json/usgs_avian_flu_report_2011_04_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_05_18.json b/data/flu-report-json/usgs_avian_flu_report_2011_05_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_05_18.json rename to data/flu-report-json/usgs_avian_flu_report_2011_05_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_05_25.json b/data/flu-report-json/usgs_avian_flu_report_2011_05_25.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_05_25.json rename to data/flu-report-json/usgs_avian_flu_report_2011_05_25.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_05_31.json b/data/flu-report-json/usgs_avian_flu_report_2011_05_31.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_05_31.json rename to data/flu-report-json/usgs_avian_flu_report_2011_05_31.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_06_07.json b/data/flu-report-json/usgs_avian_flu_report_2011_06_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_06_07.json rename to data/flu-report-json/usgs_avian_flu_report_2011_06_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_06_10.json b/data/flu-report-json/usgs_avian_flu_report_2011_06_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_06_10.json rename to data/flu-report-json/usgs_avian_flu_report_2011_06_10.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_06_20.json b/data/flu-report-json/usgs_avian_flu_report_2011_06_20.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_06_20.json rename to data/flu-report-json/usgs_avian_flu_report_2011_06_20.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_07_06.json b/data/flu-report-json/usgs_avian_flu_report_2011_07_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_07_06.json rename to data/flu-report-json/usgs_avian_flu_report_2011_07_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_07_11.json b/data/flu-report-json/usgs_avian_flu_report_2011_07_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_07_11.json rename to data/flu-report-json/usgs_avian_flu_report_2011_07_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_08_02.json b/data/flu-report-json/usgs_avian_flu_report_2011_08_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_08_02.json rename to data/flu-report-json/usgs_avian_flu_report_2011_08_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_08_05.json b/data/flu-report-json/usgs_avian_flu_report_2011_08_05.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_08_05.json rename to data/flu-report-json/usgs_avian_flu_report_2011_08_05.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_08_11.json b/data/flu-report-json/usgs_avian_flu_report_2011_08_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_08_11.json rename to data/flu-report-json/usgs_avian_flu_report_2011_08_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_08_19.json b/data/flu-report-json/usgs_avian_flu_report_2011_08_19.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_08_19.json rename to data/flu-report-json/usgs_avian_flu_report_2011_08_19.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_08_29.json b/data/flu-report-json/usgs_avian_flu_report_2011_08_29.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_08_29.json rename to data/flu-report-json/usgs_avian_flu_report_2011_08_29.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_09_15.json b/data/flu-report-json/usgs_avian_flu_report_2011_09_15.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_09_15.json rename to data/flu-report-json/usgs_avian_flu_report_2011_09_15.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_09_21.json b/data/flu-report-json/usgs_avian_flu_report_2011_09_21.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_09_21.json rename to data/flu-report-json/usgs_avian_flu_report_2011_09_21.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_09_23.json b/data/flu-report-json/usgs_avian_flu_report_2011_09_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_09_23.json rename to data/flu-report-json/usgs_avian_flu_report_2011_09_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_09_30.json b/data/flu-report-json/usgs_avian_flu_report_2011_09_30.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_09_30.json rename to data/flu-report-json/usgs_avian_flu_report_2011_09_30.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_10_07.json b/data/flu-report-json/usgs_avian_flu_report_2011_10_07.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_10_07.json rename to data/flu-report-json/usgs_avian_flu_report_2011_10_07.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_10_18.json b/data/flu-report-json/usgs_avian_flu_report_2011_10_18.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_10_18.json rename to data/flu-report-json/usgs_avian_flu_report_2011_10_18.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_10_24.json b/data/flu-report-json/usgs_avian_flu_report_2011_10_24.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_10_24.json rename to data/flu-report-json/usgs_avian_flu_report_2011_10_24.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_10_31.json b/data/flu-report-json/usgs_avian_flu_report_2011_10_31.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_10_31.json rename to data/flu-report-json/usgs_avian_flu_report_2011_10_31.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_11_17.json b/data/flu-report-json/usgs_avian_flu_report_2011_11_17.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_11_17.json rename to data/flu-report-json/usgs_avian_flu_report_2011_11_17.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_11_23.json b/data/flu-report-json/usgs_avian_flu_report_2011_11_23.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_11_23.json rename to data/flu-report-json/usgs_avian_flu_report_2011_11_23.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_12_06.json b/data/flu-report-json/usgs_avian_flu_report_2011_12_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_12_06.json rename to data/flu-report-json/usgs_avian_flu_report_2011_12_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_12_16.json b/data/flu-report-json/usgs_avian_flu_report_2011_12_16.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_12_16.json rename to data/flu-report-json/usgs_avian_flu_report_2011_12_16.json diff --git a/flu-report-json/usgs_avian_flu_report_2011_12_22.json b/data/flu-report-json/usgs_avian_flu_report_2011_12_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2011_12_22.json rename to data/flu-report-json/usgs_avian_flu_report_2011_12_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_01_06.json b/data/flu-report-json/usgs_avian_flu_report_2012_01_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_01_06.json rename to data/flu-report-json/usgs_avian_flu_report_2012_01_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_02_02.json b/data/flu-report-json/usgs_avian_flu_report_2012_02_02.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_02_02.json rename to data/flu-report-json/usgs_avian_flu_report_2012_02_02.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_02_22.json b/data/flu-report-json/usgs_avian_flu_report_2012_02_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_02_22.json rename to data/flu-report-json/usgs_avian_flu_report_2012_02_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_02_29.json b/data/flu-report-json/usgs_avian_flu_report_2012_02_29.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_02_29.json rename to data/flu-report-json/usgs_avian_flu_report_2012_02_29.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_03_06.json b/data/flu-report-json/usgs_avian_flu_report_2012_03_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_03_06.json rename to data/flu-report-json/usgs_avian_flu_report_2012_03_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_03_12.json b/data/flu-report-json/usgs_avian_flu_report_2012_03_12.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_03_12.json rename to data/flu-report-json/usgs_avian_flu_report_2012_03_12.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_03_23.json b/data/flu-report-json/usgs_avian_flu_report_2012_03_23.json similarity index 100% rename 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a/flu-report-json/usgs_avian_flu_report_2012_04_25.json b/data/flu-report-json/usgs_avian_flu_report_2012_04_25.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_04_25.json rename to data/flu-report-json/usgs_avian_flu_report_2012_04_25.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_05_22.json b/data/flu-report-json/usgs_avian_flu_report_2012_05_22.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_05_22.json rename to data/flu-report-json/usgs_avian_flu_report_2012_05_22.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_06_11.json b/data/flu-report-json/usgs_avian_flu_report_2012_06_11.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_06_11.json rename to data/flu-report-json/usgs_avian_flu_report_2012_06_11.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_06_28.json b/data/flu-report-json/usgs_avian_flu_report_2012_06_28.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_06_28.json rename to data/flu-report-json/usgs_avian_flu_report_2012_06_28.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_07_24.json b/data/flu-report-json/usgs_avian_flu_report_2012_07_24.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_07_24.json rename to data/flu-report-json/usgs_avian_flu_report_2012_07_24.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_08_06.json b/data/flu-report-json/usgs_avian_flu_report_2012_08_06.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_08_06.json rename to data/flu-report-json/usgs_avian_flu_report_2012_08_06.json diff --git a/flu-report-json/usgs_avian_flu_report_2012_08_10.json b/data/flu-report-json/usgs_avian_flu_report_2012_08_10.json similarity index 100% rename from flu-report-json/usgs_avian_flu_report_2012_08_10.json rename to data/flu-report-json/usgs_avian_flu_report_2012_08_10.json diff --git 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rename to data/nlp/validation_calculations.xlsx diff --git a/data/reports-for-er-performance-measure b/data/reports-for-er-performance-measure new file mode 100644 index 0000000..9861a87 --- /dev/null +++ b/data/reports-for-er-performance-measure @@ -0,0 +1,25 @@ +'report_data_2010_05_28_5.txt' +'report_data_2016_12_01_1.txt' +'report_data_2014_10_24_3.txt' +'report_data_2015_05_01_5.txt' +'report_data_2010_07_23_1.txt' +'report_data_2012_08_20_4.txt' +'report_data_2015_10_05_3.txt' +'report_data_2016_12_29_9.txt' +'report_data_2007_11_16_1.txt' +'report_data_2008_02_08_2.txt' +'report_data_2007_02_16_2.txt' +'report_data_2007_01_18_2.txt' +'report_data_2012_03_23_2.txt' +'report_data_2010_03_01_5.txt' +'report_data_2010_12_03_6.txt' +'report_data_2010_12_09_3.txt' +'report_data_2012_02_29_4.txt' +'report_data_2015_01_23_1.txt' +'report_data_2009_06_29_2.txt' +'report_data_2016_02_22_4.txt' +'report_data_2010_01_20_2.txt' +'report_data_2008_02_08_4.txt' +'report_data_2011_02_28_4.txt' +'report_data_2009_04_14_2.txt' +'report_data_2016_03_21_8.txt' \ No newline at end of file diff --git a/entity-resolver.py b/entity-resolver.py deleted file mode 100644 index ce42b47..0000000 --- a/entity-resolver.py +++ /dev/null @@ -1,308 +0,0 @@ -import sqlite3 -import pandas as pd -from datetime import datetime -import itertools -import matplotlib.pyplot as plt -import numpy as np -from collections import Counter - - -def days_between(d1, d2): - d1 = datetime.strptime(d1, "%Y-%m-%d") - d2 = datetime.strptime(d2, "%Y-%m-%d") - return abs((d2 - d1).days) - - -SELECT_OPERATION = input('Will you be adding rows to the table? [y/n] ') - -if SELECT_OPERATION == 'y': - DATA_INPUT = input('Location of csv file: ') - - df = pd.read_csv(DATA_INPUT) - data = df.values.tolist() - - duplicates = list() - - for i in range(len(data) - 1): - epidemic_indv = data[i] - prev_epidemic_indv = data[i - 1] - - prev_report_id = prev_epidemic_indv[0] - prev_flu_pathogen = prev_epidemic_indv[2] - prev_location = prev_epidemic_indv[3] - prev_host = prev_epidemic_indv[5] - - current_report_id = epidemic_indv[0] - current_flu_pathogen = epidemic_indv[2] - current_location = epidemic_indv[3] - current_host = epidemic_indv[5] - - if i == 0 : continue - else: - if current_report_id != prev_report_id : continue - elif current_flu_pathogen == prev_flu_pathogen \ - and current_location == prev_location \ - and current_host == prev_host: - print('Removed duplicate: ', epidemic_indv) - duplicates.append(epidemic_indv) - elif current_flu_pathogen == prev_flu_pathogen \ - and current_location == prev_location \ - and current_host != prev_host: - ch_split = current_host.split('; ') - ph_split = prev_host.split('; ') - - for host in ch_split: - if host in ph_split : continue - else: - ph_split.append(host) - joined_hosts = '; '.join(ph_split) - prev_epidemic_indv.append(joined_hosts) - prev_epidemic_indv.remove(prev_epidemic_indv[5]) - duplicates.append(epidemic_indv) - - for dup in duplicates: - data.remove(dup) - print('Number of rows after de-deupication: ', len(data)) - - labels = ['report_id', 'epidemic_date', 'flu_pathogen', 'location', 'country', 'host'] - deduplicated_data = pd.DataFrame.from_records(data, columns=labels) - df.columns = deduplicated_data.columns.str.strip() - - conn = sqlite3.connect('flu-epidemics-test.db') - c = conn.cursor() - - # Drop the table - c.execute('''DROP TABLE epidemics''') - - # Re-create table with new values - deduplicated_data.to_sql('epidemics', conn) - -else: - - conn = sqlite3.connect('flu-epidemics-test.db') - c = conn.cursor() - - epidemics_over_time = list() - - query = c.execute(''' - SELECT * FROM epidemics - ORDER BY epidemic_date, flu_pathogen, country, location - ''') - - rows = query.fetchall() - same_epidemic = list() - all_epidemics = list() - report_ids = set() - - print(len(rows)) - - for row in rows: - if not same_epidemic: - same_epidemic.append(row) - else: - previous_report = same_epidemic[-1] - - prev_report_id = previous_report[1] - prev_epidemic_date = previous_report[2] - prev_pathogen = previous_report[3] - prev_location = previous_report[4] - prev_country = previous_report[5] - - if row[3] == prev_pathogen and row[5] == prev_country: - - date_1 = prev_epidemic_date - date_2 = row[2] - no_days = days_between(date_1, date_2) - - if no_days < 60: - same_epidemic.append(row) - else: - for epi in all_epidemics: - print(epi) - for e in epi: - e_date = e[2] - e_pathogen = e[3] - e_country = e[5] - - if row[3] == e_pathogen and row[5] == e_country: - no_days2 = days_between(e_date, row[2]) - - if no_days2 < 60: - all_epidemics.remove(epi) - epi.append(row) - all_epidemics.append(epi) - else : continue - - all_epidemics.append(same_epidemic) - same_epidemic = [] - same_epidemic.append(row) - - else: - all_epidemics.append(same_epidemic) - same_epidemic = [] - same_epidemic.append(row) - - report_ids.add(row[1]) - print('Number of reports: ', len(report_ids)) - - additional_matches = set() - changed_epidemics = list() - - for i in range(len(all_epidemics) - 1): - matches = list() - - this_epi = all_epidemics[i] - last_tuple = this_epi[-1] - - if this_epi == all_epidemics[-1] : break - - for epi in all_epidemics[i+1:]: - first_epi = epi[0] - - if first_epi[3] == last_tuple[3] and first_epi[5] == last_tuple[5]: - d0 = last_tuple[2] - d1 = first_epi[2] - - try: - no_days3 = days_between(d0, d1) - except ValueError: - continue - - if no_days3 < 60: - epi = tuple(epi) - additional_matches.add(epi) - #matches.append(epi) - - #matches.append(this_epi) - #new_epi = list(itertools.chain.from_iterable(matches)) - #all_epidemics.append(new_epi) - addnl_match_lst = list(additional_matches) - - for match in addnl_match_lst: - if match in all_epidemics: - all_epidemics.remove(match) - - # Plot number of epidemics per country - ''' - no_of_countries = set() - country_count = list() - - for epidemic in all_epidemics: - country = epidemic[0][5] - - if '1912' in country: - no_of_countries.add('Taiwan') - country_count.append('Taiwan') - elif 'soviet' in country.lower(): - no_of_countries.add('Russia') - country_count.append('Russia') - elif country.lower() == 'east germany': - no_of_countries.add('Germany') - country_count.append('Germany') - elif country.lower() == 'people\'s republic of china': - no_of_countries.add('China') - country_count.append('China') - elif country.lower() == 'united states of america': - no_of_countries.add('United States') - country_count.append('United States') - else: - no_of_countries.add(country) - country_count.append(country) - - country_counter = Counter(country_count).most_common(15) - print(country_counter) - - country_names = list() - country_num = list() - - for c in country_counter: - country_names.append(c[0]) - country_num.append(c[1]) - - - fig, ax = plt.subplots() - ind = np.arange(1,16) - - b = plt.barh(ind, list(reversed(country_num))) - ax.set_yticks(ind) - ax.set_yticklabels(list(reversed(country_names))) - ax.set_xlim(0, 250) - ax.set_xlabel('Number of influenza epidemics (2006-2017)') - - plt.show() - ''' - - # Plot of the number of epidemics that each host was participant in - - ''' - no_of_hosts = set() - host_count = list() - - for epidemic in all_epidemics: - host_str = epidemic[0][6] - hosts_split = host_str.split('; ') - - for host in hosts_split: - no_of_hosts.add(host) - host_count.append(host) - - host_counter = Counter(host_count).most_common(15) - print(host_counter) - - host_names = list() - host_num = list() - - for h in host_counter: - if host == 'Metazoa' : continue - host_names.append(h[0]) - host_num.append(h[1]) - - fig, ax = plt.subplots() - ind = np.arange(1, 16) - x_ind = np.arange(0, 600, 50) - - b = plt.barh(ind, list(reversed(host_num)), color='red') - ax.set_yticks(ind) - ax.set_yticklabels(list(reversed(host_names))) - ax.set_xticks(x_ind) - ax.set_xbound(0, 600) - ax.set_xlabel('Number of influenza epidemics (2006-2017)') - - plt.show() - ''' - - no_of_years = set() - year_count = list() - - for epidemic in all_epidemics: - year_str = epidemic[0][2] - year = year_str.split('-')[0] - - no_of_years.add(year) - year_count.append(year) - - year_counter = Counter(year_count).most_common(15) - print(year_counter) - - years = list() - year_freq = list() - - for y in sorted(year_counter): - years.append(y[0]) - year_freq.append(y[1]) - - fig, ax = plt.subplots() - ind = np.arange(2005, 2018) - - plt.plot(years, year_freq, color='green') - ax.set_ylabel('Number of influenza epidemics (2006-2017)') - plt.xticks(ind, years, rotation=90) - - plt.show() - - '''for epi in all_epidemics: - print('<------------------------- NEW EPIDEMIC ------------------------->') - for e in epi: - print(e)''' - - diff --git a/epidemics.db b/epidemics.db new file mode 100644 index 0000000..e69de29 diff --git a/flu-epidemics-test.db b/flu-epidemics-test.db index 4f0f556c8d3cf6b6b718482338fd9c1756b0727f..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100644 GIT binary patch literal 0 HcmV?d00001 literal 323584 zcmeFad3==B^*?^^Gy9Hc42zh77}<>3WH*LMSV9&E31O9Gk_^dYn=r`$2_QZb7sL&5 zL);KI#0{}kid`&fRa#rcT9Ix_H;V12meyA3;`f|$XL+8<3{L?2`u*{P7oPWIi09n( z+;h)8_uQJf75*-tdu1Tl=IwG9umOy7Hr4HBjJe>yIq+Zfj}1QPqdx$0#phHXT`c>{ zO%C{1$@vj;O#yQ5&$$*j*8=BS;9LuwYk_kuaIOW;wZOR+IM)K_THss@oNIxvvjtX2 z#`L@lzR};_;9KioyWH2|Z}7GG>pPdzH?be}CDqeC^QOCJ&7L-Wp?gH%-yAV#wtGbE z*GITVjUWaiM$5(Al%A2n!!=#rx>jH8S7INe2~N9@YpG5Ib-B%<0vaS>5gt zL0?B8*tOi>Fv2}=`oekiU6k4K25*;7@%_ry(DDv%S5u(T*RJ@wHBj&E@&}Y()dxcD zUBPa}FEs@^yTp&y(FSPqY0egG`8lqCx&Gn$tLszO?_9rjedK!I^^WUJ*Y{noxW4In 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--git a/print_annotation_files.py b/ms_thesis/data_extraction/create_annotation_files.py similarity index 100% rename from print_annotation_files.py rename to ms_thesis/data_extraction/create_annotation_files.py diff --git a/print_datasets.py b/ms_thesis/data_extraction/print_datasets.py similarity index 99% rename from print_datasets.py rename to ms_thesis/data_extraction/print_datasets.py index df82737..7c1c460 100644 --- a/print_datasets.py +++ b/ms_thesis/data_extraction/print_datasets.py @@ -34,4 +34,3 @@ if count == key_ct : break count += 1 - diff --git a/select_reports.py b/ms_thesis/data_extraction/select_reports.py similarity index 100% rename from select_reports.py rename to ms_thesis/data_extraction/select_reports.py diff --git a/standoff2corenlp.py b/ms_thesis/data_extraction/standoff2corenlp.py similarity index 100% rename from standoff2corenlp.py rename to ms_thesis/data_extraction/standoff2corenlp.py diff --git a/tagged_entities_to_csv.py b/ms_thesis/data_extraction/tagged_entities_to_csv.py similarity index 100% rename from tagged_entities_to_csv.py rename to ms_thesis/data_extraction/tagged_entities_to_csv.py diff --git a/ms_thesis/entity_resolver/create_db.py b/ms_thesis/entity_resolver/create_db.py new file mode 100644 index 0000000..74e09c1 --- /dev/null +++ b/ms_thesis/entity_resolver/create_db.py @@ -0,0 +1,16 @@ +import sqlite3 +import pandas as pd + + +data_input = input("Location of csv file: ") +column_labels_input = input("Labels for columns in csv file (separate by comma and a space): ") + +labels = column_labels_input.split(", ") +df = pd.read_csv(data_input, names=labels) + +db_name_input = input("Name for SQLite3 database: ") +conn = sqlite3.connect(db_name_input) +c = conn.cursor() + +table_name_input = input("Name for table: ") +df.to_sql(table_name_input, conn) diff --git a/ms_thesis/entity_resolver/entity-resolver.py b/ms_thesis/entity_resolver/entity-resolver.py new file mode 100644 index 0000000..63e6976 --- /dev/null +++ b/ms_thesis/entity_resolver/entity-resolver.py @@ -0,0 +1,447 @@ +import sqlite3 +import pandas as pd +from datetime import datetime +from datetime import timedelta +import datetime as dt +import itertools +import matplotlib.pyplot as plt +import numpy as np +from collections import Counter +import os + + +def remove_letters(d): + d_split = d.split("-") + yr = d_split[0] + month = d_split[1] + day = d_split[2] + + if day.endswith("th"): + day = day[:-2] + + formatted_d = dt.date(int(yr), int(month), int(day)) + return formatted_d + + +def days_between(d1, d2): + d1 = datetime.strptime(remove_letters(d1), "%Y-%m-%d") + d2 = datetime.strptime(remove_letters(d2), "%Y-%m-%d") + return abs((d2 - d1).days) + + +SELECT_OPERATION = input('Will you be adding rows to the table? [y/n] ') + +if SELECT_OPERATION == 'y': + DATA_INPUT = input('Location of csv file: ') + + df = pd.read_csv(DATA_INPUT) + data = df.values.tolist() + + duplicates = list() + + for i in range(len(data) - 1): + epidemic_indv = data[i] + prev_epidemic_indv = data[i - 1] + + prev_report_id = prev_epidemic_indv[0] + prev_flu_pathogen = prev_epidemic_indv[2] + prev_location = prev_epidemic_indv[3] + prev_host = prev_epidemic_indv[5] + + current_report_id = epidemic_indv[0] + current_flu_pathogen = epidemic_indv[2] + current_location = epidemic_indv[3] + current_host = epidemic_indv[5] + + if i == 0 : continue + else: + if current_report_id != prev_report_id : continue + elif current_flu_pathogen == prev_flu_pathogen \ + and current_location == prev_location \ + and current_host == prev_host: + print('Removed duplicate: ', epidemic_indv) + duplicates.append(epidemic_indv) + elif current_flu_pathogen == prev_flu_pathogen \ + and current_location == prev_location \ + and current_host != prev_host: + ch_split = current_host.split('; ') + ph_split = prev_host.split('; ') + + for host in ch_split: + if host in ph_split : continue + else: + ph_split.append(host) + joined_hosts = '; '.join(ph_split) + prev_epidemic_indv.append(joined_hosts) + prev_epidemic_indv.remove(prev_epidemic_indv[5]) + duplicates.append(epidemic_indv) + + for dup in duplicates: + data.remove(dup) + print('Number of rows after de-deupication: ', len(data)) + + labels = ['report_id', 'epidemic_date', 'flu_pathogen', 'location', 'country', 'host'] + deduplicated_data = pd.DataFrame.from_records(data, columns=labels) + df.columns = deduplicated_data.columns.str.strip() + + conn = sqlite3.connect('flu-tuples.db') + c = conn.cursor() + + # Drop the table + c.execute('''DROP TABLE epidemics''') + + # Re-create table with new values + deduplicated_data.to_sql('epidemics', conn) + +else: + conn = sqlite3.connect('flu-tuples.db') + c = conn.cursor() + + query = c.execute(''' + SELECT * FROM epidemics + ORDER BY epidemic_date, flu_pathogen, country, location + ''') + + q2 = c.execute('''select * from epidemics''') + column_names = [d[0] for d in q2.description] + #print(column_names) + + rows = query.fetchall() + same_epidemic = list() + matched_epidemics = list() + unmatched_epidemics = list() + + print("Number of rows in table: ", len(rows)) + #print(rows) + + report_count = 0 + + while rows: + last_row_id = str(rows[-1][0]) + first = rows.pop(0) + same_epidemic.append(first) + + report_ids = list() + + first_id = first[0] + first_pathogen = first[3] + first_country = first[5] + + report_ids.append(first_id) + + while True: + row_id = "" + for tup in rows: + row_id = str(tup[0]) + + if row_id in report_ids: + continue + elif tup[5] == first_country and tup[3] == first_pathogen: + earliest_epi_date = remove_letters(same_epidemic[0][2]) + latest_epi_date = remove_letters(same_epidemic[-1][2]) + this_epi_date = remove_letters(tup[2]) + margin = timedelta(days=60) + + if earliest_epi_date - margin <= this_epi_date <= latest_epi_date + margin: + same_epidemic.append(tup) + same_epidemic.sort(key=lambda x: remove_letters(x[2])) + report_ids.append(row_id) + break + else: + continue + + if row_id == last_row_id: + break + + if len(same_epidemic) > 1: + matched_epidemics.append(same_epidemic) + else: + unmatched_epidemics.append(same_epidemic[0]) + rows[:] = [row for row in rows if row not in same_epidemic] + same_epidemic = [] + + #print(len(matched_epidemics)) + #print(len(unmatched_epidemics)) + #for epi in matched_epidemics: + #print(epi) + + '''# Plot number of epidemics per country + + no_of_countries = set() + country_count = list() + + for epidemic in all_epidemics: + country = epidemic[0][5] + + if '1912' in country: + no_of_countries.add('Taiwan') + country_count.append('Taiwan') + elif 'soviet' in country.lower(): + no_of_countries.add('Russia') + country_count.append('Russia') + elif country.lower() == 'east germany': + no_of_countries.add('Germany') + country_count.append('Germany') + elif country.lower() == 'people\'s republic of china': + no_of_countries.add('China') + country_count.append('China') + elif country.lower() == 'united states of america': + no_of_countries.add('United States') + country_count.append('United States') + else: + no_of_countries.add(country) + country_count.append(country) + + country_counter = Counter(country_count).most_common(15) + print(country_counter) + + country_names = list() + country_num = list() + + for c in country_counter: + country_names.append(c[0]) + country_num.append(c[1]) + + fig, ax = plt.subplots() + ind = np.arange(1,16) + + b = plt.barh(ind, list(reversed(country_num))) + ax.set_title('Number of Avian Influenza Epidemics by Country (2006-2017)') + ax.set_yticks(ind) + ax.set_yticklabels(list(reversed(country_names))) + ax.set_xlim(0, 250) + ax.set_xlabel('Count of influenza epidemics') + + plt.show() + ''' + + # Plot of the number of epidemics that each host was participant in + + ''' + no_of_hosts = set() + host_count = list() + + for epidemic in all_epidemics: + host_str = epidemic[0][6] + hosts_split = host_str.split('; ') + + for host in hosts_split: + no_of_hosts.add(host) + host_count.append(host) + + host_counter = Counter(host_count).most_common(15) + print(host_counter) + + host_names = list() + host_num = list() + + for h in host_counter: + if host == 'Metazoa' : continue + host_names.append(h[0]) + host_num.append(h[1]) + + fig, ax = plt.subplots() + ind = np.arange(1, 16) + x_ind = np.arange(0, 600, 50) + + b = plt.barh(ind, list(reversed(host_num)), color='red') + ax.set_title('Number of Avian Influenza Epidemics that Affected Each Host (2006-2017)') + ax.set_yticks(ind) + ax.set_yticklabels(list(reversed(host_names))) + ax.set_xticks(x_ind) + ax.set_xbound(0, 600) + ax.set_xlabel('Count of influenza epidemics') + + plt.show() + ''' + + ''' + no_of_years = set() + year_count = list() + + for epidemic in all_epidemics: + year_str = epidemic[0][2] + year = year_str.split('-')[0] + + no_of_years.add(year) + year_count.append(year) + + year_counter = Counter(year_count).most_common() + print(year_counter) + + years = list() + year_freq = list() + + for y in sorted(year_counter): + years.append(y[0]) + year_freq.append(y[1]) + + fig, ax = plt.subplots() + ind = np.arange(2005, 2018) + + plt.plot(years, year_freq, color='green') + ax.set_ylabel('Count of influenza epidemics') + ax.set_title('Number of Avian Influenza Epidemics by Year') + plt.xticks(ind, years, rotation=90) + + plt.show() + ''' + + ''' + no_of_pathogens = set() + pathogen_count = list() + + for epidemic in all_epidemics: + pathogen_str = epidemic[0][3] + pathogens_split = pathogen_str.split('; ') + + for pathogen in pathogens_split: + no_of_pathogens.add(pathogen) + pathogen_count.append(pathogen) + + pathogen_counter = Counter(pathogen_count).most_common(18) + + pathogen_names = list() + pathogen_num = list() + + for p in pathogen_counter: + if p[0] == 'Influenza A virus' : continue + pathogen_names.append(p[0]) + pathogen_num.append(p[1]) + + fig, ax = plt.subplots() + ind = np.arange(1, 18) + x_ind = np.arange(0, 775, 50) + + b = plt.barh(ind, list(reversed(pathogen_num)), color='green') + ax.set_title('Number of Avian Influenza Epidemics by Influenza Subtype (2006-2017)') + ax.set_yticks(ind) + ax.set_yticklabels(list(reversed(pathogen_names))) + ax.set_xticks(x_ind) + ax.set_xbound(0, 775) + ax.set_xlabel('Count of influenza epidemics') + + for i in ax.patches: + if i.get_width() < 40: + x_coord = i.get_width()+5 + y_coord = i.get_y()+.25 + string = 'count=' + str(int(i.get_width())) + ax.text(x=x_coord, y=y_coord, s=string, fontsize=8) + + plt.show() + ''' + + epidemic_count = 0 + + # Remove duplicate epidemic tuples from each set of matched tuples. + # Assign epidemic identifier to remaining tuples. + # Create a merged epidemic tuple from remaining matched tuples. + merged_tuples = list() + + for epi in matched_epidemics: + epidemic_id = "flu_" + epidemic_count += 1 + no_of_leading_zeroes = 5 - len(str(epidemic_count)) + + for z in range(no_of_leading_zeroes): + epidemic_id = epidemic_id + "0" + epidemic_id = epidemic_id + str(epidemic_count) + + no_of_epi_tuples = range(len(epi)) + tuples_to_remove = set() + deleted_tuple_ids = list() + + for i in no_of_epi_tuples: + epidemic_to_check = epi[i] + + if epidemic_to_check[0] in deleted_tuple_ids: + continue + + for e in epi: + tuple_no = e[0] + report_id = e[1] + epi_date = e[2] + epi_location = e[4] + epi_country = e[5] + epi_host = e[6] + + if tuple_no == epidemic_to_check[0]: + continue + elif report_id == epidemic_to_check[1] \ + and epi_date == epidemic_to_check[2] \ + and epi_location == epidemic_to_check[4] \ + and epi_country == epidemic_to_check[5] \ + and epidemic_to_check[6] in epi_host: + tuples_to_remove.add(e) + deleted_tuple_ids.append(tuple_no) + elif "(country)" in epi_location \ + and report_id == epidemic_to_check[1] \ + and epi_date == epidemic_to_check[2] \ + and epi_country == epidemic_to_check[5] \ + and epidemic_to_check[6] in epi_host: + tuples_to_remove.add(e) + + for t in tuples_to_remove: + epi.remove(t) + + #print('<------------------------- NEW EPIDEMIC ------------------------->') + epi_hosts = set() + epi_locations = set() + epi_reports = set() + epi_dates = set() + for e in epi: + if ");" in e[4]: + epi_locations.add(e[4].replace(");", "),")) + else: + epi_locations.add(e[4]) + + epi_reports.add(e[1]) + epi_dates.add(e[2]) + host_lst = e[6].split("; ") + for h in host_lst: + epi_hosts.add(h) + + e_list = list(e) + e_list.append(epidemic_id) + + dates = sorted(epi_dates) + + if len(epi_locations) > 1: + for l in epi_locations.copy(): + if "(country)" in l: + epi_locations.remove(l) + + # Merge each tuple into one epidemic tuple + date_range = "{} to {}".format(dates[0], dates[-1]) + pathogen = epi[0][3] + locations = "; ".join(epi_locations) + country = epi[0][5] + hosts = "; ".join(epi_hosts) + source_reports = "; ".join(epi_reports) + + epidemic_tuple = (epidemic_id, date_range, pathogen, locations, country, hosts, source_reports) + merged_tuples.append(epidemic_tuple) + + print("Number of matched epidemics: ", len(matched_epidemics)) + print("Number of unmatched epidemics: ", len(unmatched_epidemics)) + + # Write merged tuples to a CSV file + epidemic_fields = ["epidemic_id", "date_range", "pathogen", "locations", "country", "hosts", "source_reports"] + + merged_tuples_df = pd.DataFrame.from_records(merged_tuples, columns=epidemic_fields) + + today = datetime.today().strftime("%Y-%m-%d") + path = "data/entity_resolver_output" + epidemics_filename = "er-out-epidemic-tuples-{}.csv".format(today) + epidemics_filename = os.path.join(path, epidemics_filename) + + merged_tuples_df.to_csv(epidemics_filename) + + # Write unmatched tuples to a CSV file + labels = ['index', 'report_id', 'epidemic_date', 'flu_pathogen', 'location', 'country', 'host'] + unmatched_tuples_df = 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[y/n] ") + +conn = sqlite3.connect("../../flu-tuples.db") +c = conn.cursor() + +q = c.execute('''select * from epidemics''') +rows = q.fetchall() +print("Number of rows in table: ", len(rows)) + +if column_names_input == "y": + column_names = [d[0] for d in q.description] + print("Column names: ", ", ".join(column_names)) + +query_input = input("Input query: ") + +query = c.execute("""{}""".format(query_input)) +result = query.fetchall() + +for row in result: + print(row) \ No newline at end of file diff --git a/ms_thesis/entity_resolver/select_tuples.py b/ms_thesis/entity_resolver/select_tuples.py new file mode 100644 index 0000000..89293d2 --- /dev/null +++ b/ms_thesis/entity_resolver/select_tuples.py @@ -0,0 +1,28 @@ +""" +Randomly selects a specified number of tuples from a specified database. +""" + +import sqlite3 +import random +import pandas as pd +from datetime import datetime + + +tuple_number_input = input("Number of tuples to be randomly selected: ") +db_input = input("Database to select tuples from: ") +table_input = input("Table to select tuples from: ") + +conn = sqlite3.connect(db_input) +c = conn.cursor() + +query = c.execute("""select * from {}""".format(table_input)) +column_names = [d[0] for d in query.description] +rows = query.fetchall() + +selected_tuples = random.sample(rows, int(tuple_number_input)) +selected_tuples_df = pd.DataFrame.from_records(selected_tuples, columns=column_names) + +today = datetime.today().strftime("%Y-%m-%d") +filename = "../../data/entity_resolver_output/selected-unmatched-tuples-{}.csv".format(today) + +selected_tuples_df.to_csv(filename, index=False) \ No newline at end of file diff --git a/ms_thesis/entity_resolver/unmatched-tuples-2.db b/ms_thesis/entity_resolver/unmatched-tuples-2.db new file mode 100644 index 0000000000000000000000000000000000000000..609e1303cf4be8070a5e833b260f7ac27722f37f GIT binary patch literal 28672 zcmeHPdu&_hb*J7h^4>TJqbQ0Z%8DX04ny9{ml(xSXjztJy(~-eJ7%t=YwB7QDf1y) 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k=9*sRQk;|1*ui5QHzflY0)*qHrpi7`+e3v$f*~{iA5epAHUIzs literal 0 HcmV?d00001 diff --git a/ms_thesis/entity_resolver/update_table.py b/ms_thesis/entity_resolver/update_table.py new file mode 100644 index 0000000..22ce319 --- /dev/null +++ b/ms_thesis/entity_resolver/update_table.py @@ -0,0 +1,32 @@ +import sqlite3 + + +tuple_number_input = input("List of tuple numbers that need to be updated, separated by semicolons: ") +column_name_input = input("Column name that needs to be updated: ") +value_input = input("Value that is to be added to the tuple(s): ") + +tuple_numbers = tuple_number_input.split(';') + +conn = sqlite3.connect('../../flu-tuples.db') +c = conn.cursor() + +for tuple_no in tuple_numbers: + before_update = c.execute('''SELECT * FROM epidemics WHERE `index`=?''', (tuple_no,)) + print('Before update: ', c.fetchone()) + + update = c.execute(''' + UPDATE epidemics + SET {} = ? + WHERE `index` = ? + '''.format(column_name_input), (value_input, tuple_no,)) + + after_update = c.execute('''SELECT * FROM epidemics WHERE `index`=?''', (tuple_no,)) + print('After update: ', c.fetchone(), '\n') + +commit = input("Commit changes? [y/n] ") + +if commit == 'y': + conn.commit() + conn.close() +elif commit == 'n': + conn.close() \ No newline at end of file diff --git a/html_scraper.py b/ms_thesis/web_scraper/html_scraper.py similarity index 100% rename from html_scraper.py rename to ms_thesis/web_scraper/html_scraper.py diff --git a/scrap_latest_report.py b/ms_thesis/web_scraper/scrap_latest_report.py similarity index 100% rename from scrap_latest_report.py rename to ms_thesis/web_scraper/scrap_latest_report.py diff --git a/scraper.py b/ms_thesis/web_scraper/scraper.py similarity index 100% rename from scraper.py rename to ms_thesis/web_scraper/scraper.py diff --git a/requirements.txt b/requirements.txt new file mode 100644 index 0000000..2d85c96 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,183 @@ +alabaster==0.7.10 +anaconda-client==1.6.3 +anaconda-navigator==1.6.2 +anaconda-project==0.6.0 +appnope==0.1.0 +appscript==1.0.1 +argcomplete==1.0.0 +asn1crypto==0.22.0 +astroid==1.4.9 +astropy==1.3.2 +Babel==2.4.0 +backports.shutil-get-terminal-size==1.0.0 +beautifulsoup4==4.6.0 +biopython==1.68 +bitarray==0.8.1 +blaze==0.10.1 +bleach==1.5.0 +bokeh==0.12.5 +boto==2.46.1 +Bottleneck==1.2.1 +certifi==2018.1.18 +cffi==1.10.0 +chardet==3.0.4 +chest==0.2.3 +click==6.7 +cloudpickle==0.2.2 +clyent==1.2.2 +colorama==0.3.9 +conda==4.3.30 +conda-build==3.0.19 +conda-manager==0.4.0 +conda-verify==2.0.0 +configobj==5.0.6 +contextlib2==0.5.5 +cryptography==1.8.1 +cx-Oracle==6.2.1 +cycler==0.10.0 +Cython==0.25.2 +cytoolz==0.8.2 +dask==0.14.3 +datashape==0.5.4 +decorator==4.0.11 +dill==0.2.6 +distributed==1.16.3 +Django==2.0.4 +docutils==0.13.1 +dynd==0.7.3.dev1 +entrypoints==0.2.2 +et-xmlfile==1.0.1 +fastcache==1.0.2 +filelock==2.0.7 +Flask==0.12.2 +Flask-Cors==3.0.2 +gevent==1.2.1 +Ghost.py==0.2.3 +glob2==0.5 +greenlet==0.4.12 +h5py==2.7.0 +HeapDict==1.0.0 +html5lib==0.999 +idna==2.6 +imagesize==0.7.1 +infinity==1.4 +intervals==0.7.1 +ipykernel==4.6.1 +ipython==5.3.0 +ipython-autotime==0.1 +ipython-genutils==0.2.0 +ipywidgets==6.0.0 +isodate==0.5.4 +isort==4.2.5 +itsdangerous==0.24 +jdcal==1.3 +jedi==0.10.2 +Jinja2==2.9.6 +jsonschema==2.6.0 +jupyter==1.0.0 +jupyter-client==5.0.1 +jupyter-console==5.1.0 +jupyter-core==4.3.0 +lazy-object-proxy==1.2.2 +llvmlite==0.18.0 +locket==0.2.0 +lxml==3.7.3 +MarkupSafe==0.23 +matplotlib==2.0.2 +mistune==0.7.4 +mpmath==0.19 +msgpack-python==0.4.8 +multipledispatch==0.4.9 +navigator-updater==0.1.0 +nbconvert==5.1.1 +nbformat==4.3.0 +networkx==1.11 +nltk==3.2.3 +nose==1.3.7 +notebook==5.0.0 +numba==0.33.0 +numexpr==2.6.2 +numpy==1.12.1 +numpydoc==0.6.0 +odo==0.5.0 +olefile==0.44 +openpyxl==2.4.7 +packaging==16.8 +pandas==0.20.1 +pandocfilters==1.4.1 +partd==0.3.8 +pathlib2==2.2.1 +patsy==0.4.1 +pep8==1.7.0 +pexpect==4.2.1 +pickleshare==0.7.4 +Pillow==4.1.1 +pkginfo==1.4.1 +ply==3.10 +prompt-toolkit==1.0.14 +psutil==5.2.2 +ptyprocess==0.5.1 +py==1.4.33 +pyasn1==0.2.3 +pycorenlp==0.3.0 +pycosat==0.6.2 +pycparser==2.17 +pycrypto==2.6.1 +pycurl==7.43.0 +pyflakes==1.5.0 +Pygments==2.2.0 +pylint==1.6.4 +pyodbc==4.0.16 +pyOpenSSL==17.0.0 +pyparsing==2.1.4 +pytest==3.0.7 +python-dateutil==2.6.0 +pytz==2017.2 +PyWavelets==0.5.2 +PyYAML==3.12 +pyzmq==16.0.2 +QtAwesome==0.4.4 +qtconsole==4.3.0 +QtPy==1.2.1 +rdflib==4.2.2 +redis==2.10.5 +reportlab==3.3.0 +requests==2.18.4 +rope-py3k==0.9.4.post1 +scikit-image==0.13.0 +scikit-learn==0.18.1 +scipy==0.19.0 +seaborn==0.7.1 +simplegeneric==0.8.1 +singledispatch==3.4.0.3 +six==1.10.0 +snowballstemmer==1.2.1 +sockjs-tornado==1.0.3 +sortedcollections==0.5.3 +sortedcontainers==1.5.7 +SPARQLWrapper==1.8.2 +Sphinx==1.5.6 +sphinx-rtd-theme==0.2.4 +spyder==3.1.4 +SQLAlchemy==1.1.9 +statsmodels==0.8.0 +sympy==1.0 +tables==3.3.0 +tblib==1.3.2 +terminado==0.6 +testpath==0.3 +toolz==0.8.2 +tornado==4.5.1 +traitlets==4.3.2 +unicodecsv==0.14.1 +urllib3==1.22 +virtualenv==15.0.2 +wcwidth==0.1.7 +Werkzeug==0.12.2 +widgetsnbextension==2.0.0 +wrapt==1.10.10 +xlrd==1.0.0 +XlsxWriter==0.9.6 +xlwings==0.10.4 +xlwt==1.2.0 +zict==0.1.2 \ No newline at end of file diff --git a/setup.py b/setup.py new file mode 100644 index 0000000..0b4c9c7 --- /dev/null +++ b/setup.py @@ -0,0 +1,20 @@ +from distutils.core import setup + + +with open("README.md") as f: + readme = f.read() + +with open("LICENSE.txt") as f: + license = f.read() + +setup( + name="Flu Scraper and Entity Resolver", + version="0.1.0", + description="Tool for scraping textual web-based reports on influenza epidemics; extracting location, date, pathogen, and host information; identifying individual epidemics; and connecting information about the same epidemic.", + long_description=readme, + author="Matthew Diller", + author_email="diller17@ufl.edu", + url="https://github.com/dillerm/ms_thesis", + license=license, + #packages=find_packages(exclude=[]) +) \ No newline at end of file