Question on Docker part of the course

[rioualen]

Hello, it's been a while!

I was at last year's edition of ARANGS, and I am now starting to use Docker in my job, after using virtual machines for a while. I'd done a makefile to install all the tools that my pipeline requires. Now I'm switching to Docker, I'd like to replace the makefile by my own images.

So I looked at the files from last year, and now I'm wondering if there's a reason for you to use both a bash file and a docker file to install the tools, instead of just using a docker file ? (like this for example : https://github.com/kathrinklee/docker)

Good luck for the next edition of ARANGS, which I believe is coming soon! I liked it a lot last year!

Bye

Claire

[dmlond]

We used the bash scripts as a convenience for complicated multi-image processes. This has been made much easier with docker-compose (https://docs.docker.com/compose/) used in combination with your Dockerfiles.

Darin London

"I am beating out the rhythm for the whole #!"

Office of Research Informatics (ORI), Duke University
School of Medicine
Need help? Call 919-684-2243 and press 4 for Research Support

From: rioualen <[email protected]mailto:[email protected]>
Reply-To: dmlond/arangs2015 <[email protected]mailto:[email protected]>
Date: Wednesday, April 27, 2016 at 9:09 AM
To: dmlond/arangs2015 <[email protected]mailto:[email protected]>
Subject: [dmlond/arangs2015] Question on Docker part of the course (#20)

Hello, it's been a while!

I was at last year's edition of ARANGS, and I am now starting to use Docker in my job, after using virtual machines for a while. I'd done a makefile to install all the tools that my pipeline requires. Now I'm switching to Docker, I'd like to replace the makefile by my own images.

So I looked at the files from last year, and now I'm wondering if there's a reason for you to use both a bash file and a docker file to install the tools, instead of just using a docker file ? (like this for example : https://github.com/kathrinklee/docker)

Good luck for the next edition of ARANGS, which I believe is coming soon! I liked it a lot last year!

Bye

Claire

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