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.gitmodules
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[submodule "bwa_aligner"]
path = bwa_aligner
url = [email protected]:dmlond/bwa_aligner.git
[submodule "bwa_aligner_agent"]
path = bwa_aligner_agent
url = [email protected]:dmlond/bwa_aligner_agent.git
[submodule "bwa_plasmodium_data"]
path = bwa_plasmodium_data
url = [email protected]:dmlond/bwa_plasmodium_data.git
[submodule "bwa_reference_volume"]
path = bwa_reference_volume
url = [email protected]:dmlond/bwa_reference_volume.git
[submodule "bwa_reference"]
path = bwa_reference
url = [email protected]:dmlond/bwa_reference.git
[submodule "google_agent_base"]
path = google_agent_base
url = https://github.com/dmlond/google_agent_base
[submodule "split_raw"]
path = split_raw
url = [email protected]:dmlond/split_raw.git
[submodule "split_agent"]
path = split_agent
url = [email protected]:dmlond/split_agent.git
[submodule "bwa_samtools_base"]
path = bwa_samtools_base
url = [email protected]:dmlond/bwa_samtools_base.git
[submodule "mongo_agent_aligner/mongo_agent_alignment"]
path = mongo_agent_aligner/mongo_agent_alignment
url = [email protected]:dmlond/mongo_agent_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_split_raw"]
path = mongo_agent_aligner/mongo_agent_split_raw
url = [email protected]:dmlond/mongo_agent_split_raw.git
[submodule "mongo_agent_aligner/mongo_agent_align_subset"]
path = mongo_agent_aligner/mongo_agent_align_subset
url = [email protected]:dmlond/mongo_agent_align_subset.git
[submodule "mongo_agent_aligner/mongo_agent_merge_bam"]
path = mongo_agent_aligner/mongo_agent_merge_bam
url = [email protected]:dmlond/mongo_agent_merge_bam.git
[submodule "mongo_agent_aligner/mongo_agent_merge_monitor"]
path = mongo_agent_aligner/mongo_agent_merge_monitor
url = [email protected]:dmlond/mongo_agent_merge_monitor.git
[submodule "mongo_agent_aligner/mongo_agent_seed_alignment"]
path = mongo_agent_aligner/mongo_agent_seed_alignment
url = https://github.com/dmlond/mongo_agent_seed_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_watch_alignment"]
path = mongo_agent_aligner/mongo_agent_watch_alignment
url = https://github.com/dmlond/mongo_agent_watch_alignment.git
[submodule "mongo_agent_aligner/mongo_agent_seed_reference"]
path = mongo_agent_aligner/mongo_agent_seed_reference
url = https://github.com/dmlond/mongo_agent_seed_reference.git