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DESCRIPTION
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DESCRIPTION
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Package: sfreemap
Type: Package
Title: Simulation Free Stochastic Mapping
Version: 1.1
Author: Diego Giovane Pasqualin, Marcos Barbeitos and Fabiano Silva
Depends: R (>= 3.6.0)
Imports: Rcpp (>= 1.0), RcppArmadillo (>= 0.9), ape (>= 5.3), phytools (>= 0.6), reshape2(>= 1.4), ggplot2(>= 3.2), parallel (>= 3.6), phangorn (>= 2.5), seqinr (>= 3.6)
Suggests: testthat (>= 2.3), knitr (>= 1.26), rmarkdown (>= 2.0)
Maintainer: Diego Giovane Pasqualin <[email protected]>
Description: SFREEMAP is an analytical approach to obtain accurate, per-branch
expectations of numbers of state transitions and dwelling times. It also
provides an intuitive way of visualizing the results by integrating over
the posterior and summarizing the parameters onto a target reference
topology (such as a consensus or MAP tree) provided by the user.
License: GPL (>= 2)
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr