From 26fbba3c216283f3f34e5d9e939b3c7e0f600f93 Mon Sep 17 00:00:00 2001
From: dvklopfenstein <dvklopfenstein@users.noreply.github.com>
Date: Tue, 6 Dec 2022 10:09:20 -0500
Subject: [PATCH 1/2] If arg is "all," return all indices of PubMed queries

---
 src/pmidcite/pubmedqueryicite.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/pmidcite/pubmedqueryicite.py b/src/pmidcite/pubmedqueryicite.py
index a11166a..ea0af73 100644
--- a/src/pmidcite/pubmedqueryicite.py
+++ b/src/pmidcite/pubmedqueryicite.py
@@ -92,6 +92,8 @@ def get_index(argv, queries=None):
         # If no argument was provided, run the last query in the list
         if len(argv) == 1:
             return [-1]
+        if argv[1] == 'all' and queries is not None:
+            return list(range(len(queries)))
         if 'h' in argv[1] and queries:
             for idx, item in enumerate(queries):
                 print('{I:3} {E}'.format(I=idx, E=item))

From f7b88bcf53688d78be46030abeb3a20776457eb0 Mon Sep 17 00:00:00 2001
From: dvklopfenstein <dvklopfenstein@users.noreply.github.com>
Date: Tue, 6 Dec 2022 10:47:38 -0500
Subject: [PATCH 2/2] v0.0.41

---
 CHANGELOG.md                | 8 ++++++--
 setup.py                    | 2 +-
 src/pmidcite/__version__.py | 2 +-
 3 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index dd245e4..2881971 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,8 @@
 ## Summary
 
 * [**Unreleased**](#unreleased)
-* [**Release 2022-11-26 v0.0.38**](#release-2022-11-28-v0040) Added pmidcite.scripts.icite; pip3, not pip from Python2
+* [**Release 2022-12-06 v0.0.41**](#release-2022-12-06-v0041) setup.py updates for make target, install 
+* [**Release 2022-11-26 v0.0.40**](#release-2022-11-28-v0040) Added pmidcite.scripts.icite; pip3, not pip from Python2
 * [**Release 2022-11-26 v0.0.38**](#release-2022-11-26-v0038) Added instructions, and console_script to run script, icite
 * [**Release 2022-09-27 v0.0.37**](#release-2022-09-27-v0037) Remove unused package in setup.py
 * [**Release 2022-07-03 v0.0.36**](#release-2022-07-03-v0036) Change citation count on GitHub repo card
@@ -41,7 +42,10 @@
 
 ### Unreleased
 
-### release 2022-11-29 v0.0.40
+### release 2022-12-06 v0.0.41
+* CHANGED setup.py PACKAGES variable to run install make target
+
+### release 2022-11-28 v0.0.40
 * ADDED `icite` to new package module, pmidcite.scripts
 * CHANGED `pip install .` to `pip3 install .` in makefile and README.md
 
diff --git a/setup.py b/setup.py
index 69436ea..6eab562 100755
--- a/setup.py
+++ b/setup.py
@@ -42,7 +42,7 @@ def get_long_description():
 setup(
     name=NAME,
     ## version=versioneer.get_version(),
-    version='0.0.40',
+    version='0.0.41',
     author='DV Klopfenstein, PhD',
     author_email='dvklopfenstein@protonmail.com',
     ## cmdclass=versioneer.get_cmdclass(),
diff --git a/src/pmidcite/__version__.py b/src/pmidcite/__version__.py
index 8b5a501..4705298 100644
--- a/src/pmidcite/__version__.py
+++ b/src/pmidcite/__version__.py
@@ -1,3 +1,3 @@
 """Version of pmidcite project"""
 
-__version__ = '0.0.40'
+__version__ = '0.0.41'