From 2d7b7393ec58cdc589b650458208546529958d4e Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Fri, 24 May 2019 21:08:39 +0200 Subject: [PATCH 01/87] initial export with line fix --- matRadGUI_export.m | 7518 ++++++++++++++++++++++++++++++++++++++++++ matRadGUI_export.mat | Bin 0 -> 7550 bytes 2 files changed, 7518 insertions(+) create mode 100644 matRadGUI_export.m create mode 100644 matRadGUI_export.mat diff --git a/matRadGUI_export.m b/matRadGUI_export.m new file mode 100644 index 000000000..13149e2f2 --- /dev/null +++ b/matRadGUI_export.m @@ -0,0 +1,7518 @@ +function varargout = matRadGUI_export(varargin) +% matRad GUI +% +% call +% MATRADGUI_EXPORT, by itself, creates a new MATRADGUI_EXPORT or raises the existing +% singleton*. +% +% H = MATRADGUI_EXPORT returns the handle to a new MATRADGUI_EXPORT or the handle to +% the existing singleton*. +% +% MATRADGUI_EXPORT('CALLBACK',hObject,eventData,handles,...) calls the local +% function named CALLBACK in MATRADGUI_EXPORT.M with the given input arguments. +% +% MATRADGUI_EXPORT('Property','Value',...) creates a new MATRADGUI_EXPORT or raises the +% existing singleton*. Starting from the left, property value pairs are +% applied to the GUI before matRadGUI_export_OpeningFcn gets called. An +% unrecognized property name or invalid value makes property application +% stop. All inputs are passed to matRadGUI_export_OpeningFcn via varargin. +% +% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one +% instance to run (singleton)". +% +% See also: GUIDE, GUIDATA, GUIHANDLES +% +% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% +% Copyright 2015 the matRad development team. +% +% This file is part of the matRad project. It is subject to the license +% terms in the LICENSE file found in the top-level directory of this +% distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part +% of the matRad project, including this file, may be copied, modified, +% propagated, or distributed except according to the terms contained in the +% LICENSE file. +% +% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +if ~isdeployed + matRadRootDir = fileparts(mfilename('fullpath')); + addpath(genpath(matRadRootDir)); +end + +[env, versionString] = matRad_getEnvironment(); + +% abort for octave +switch env + case 'MATLAB' + + case 'OCTAVE' + fprintf(['matRad GUI not available for ' env ' ' versionString ' \n']); + return; + otherwise + fprintf(['not yet tested']); + end + +% Begin initialization code - DO NOT EDIT +% set platform specific look and feel +if ispc + lf = 'com.sun.java.swing.plaf.windows.WindowsLookAndFeel'; +elseif isunix + lf = 'com.jgoodies.looks.plastic.Plastic3DLookAndFeel'; +elseif ismac + lf = 'com.apple.laf.AquaLookAndFeel'; +end +javax.swing.UIManager.setLookAndFeel(lf); + +gui_Singleton = 1; +gui_State = struct('gui_Name', mfilename, ... + 'gui_Singleton', gui_Singleton, ... + 'gui_OpeningFcn', @matRadGUI_export_OpeningFcn, ... + 'gui_OutputFcn', @matRadGUI_export_OutputFcn, ... + 'gui_LayoutFcn', @matRadGUI_export_LayoutFcn, ... + 'gui_Callback', []); +if nargin && ischar(varargin{1}) + gui_State.gui_Callback = str2func(varargin{1}); +end + +if nargout + [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); +else + gui_mainfcn(gui_State, varargin{:}); +end + +% End initialization code - DO NOT EDIT + +function handles = resetGUI(hObject, handles, varargin) +% enable opengl software rendering to visualize linewidths properly +if ispc + opengl software +elseif ismac + % opengl is not supported +end + +% Choose default command line output for matRadGUI_export +handles.output = hObject; +%show matrad logo +axes(handles.axesLogo) +[im, ~, alpha] = imread('matrad_logo.png'); +f = image(im); +axis equal off +set(f, 'AlphaData', alpha); +% show dkfz logo +axes(handles.axesDKFZ) +[im, ~, alpha] = imread('DKFZ_Logo.png'); +f = image(im); +axis equal off; +set(f, 'AlphaData', alpha); + +% turn off the datacursormode (since it does not allow to set scrolling +% callbacks +handles.dcm_obj = datacursormode(handles.figure1); +set(handles.dcm_obj,'DisplayStyle','window'); +if strcmpi(get(handles.dcm_obj,'Enable'),'on') + set(handles.dcm_obj,'Enable','off'); +end +%Add the callback for the datacursor display +set(handles.dcm_obj,'UpdateFcn',@dataCursorUpdateFunction); + +% set callback for scroll wheel function +set(gcf,'WindowScrollWheelFcn',@matRadScrollWheelFcn); + +% change color of toobar but only the first time GUI is started +if handles.initialGuiStart + hToolbar = findall(hObject,'tag','uitoolbar1'); + jToolbar = get(get(hToolbar,'JavaContainer'),'ComponentPeer'); + jToolbar.setBorderPainted(false); + color = java.awt.Color.gray; + % Remove the toolbar border, to blend into figure contents + jToolbar.setBackground(color); + % Remove the separator line between toolbar and contents + warning('off','MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame'); + jFrame = get(handle(hObject),'JavaFrame'); + jFrame.showTopSeparator(false); + jtbc = jToolbar.getComponents; + for idx=1:length(jtbc) + jtbc(idx).setOpaque(false); + jtbc(idx).setBackground(color); + for childIdx = 1 : length(jtbc(idx).getComponents) + jtbc(idx).getComponent(childIdx-1).setBackground(color); + end + end +end + + +set(handles.legendTable,'String',{'no data loaded'}); +% clear VOIPlotFlag +if isfield(handles,'VOIPlotFlag') + handles = rmfield(handles,'VOIPlotFlag'); +end + +%seach for availabes machines +handles.Modalities = {'photons','protons','carbon'}; +for i = 1:length(handles.Modalities) + pattern = [handles.Modalities{1,i} '_*']; + if isdeployed + Files = dir([ctfroot filesep 'matRad' filesep pattern]); + else + Files = dir([fileparts(mfilename('fullpath')) filesep pattern]); + end + for j = 1:length(Files) + if ~isempty(Files) + MachineName = Files(j).name(numel(handles.Modalities{1,i})+2:end-4); + if isfield(handles,'Machines') + if sum(strcmp(handles.Machines,MachineName)) == 0 + handles.Machines{size(handles.Machines,2)+1} = MachineName; + end + else + handles.Machines = cell(1); + handles.Machines{1} = MachineName; + end + end + end +end +set(handles.popUpMachine,'String',handles.Machines); + + +vChar = get(handles.editGantryAngle,'String'); +if strcmp(vChar(1,1),'0') && length(vChar)==6 + set(handles.editGantryAngle,'String','0'); +end +vChar = get(handles.editCouchAngle,'String'); +if strcmp(vChar(1,1),'0') && length(vChar)==3 + set(handles.editCouchAngle,'String','0') +end +%% +% handles.State=0 no data available +% handles.State=1 ct cst and pln available; ready for dose calculation +% handles.State=2 ct cst and pln available and dij matric(s) are calculated; +% ready for optimization +% handles.State=3 plan is optimized + + +% if plan is changed go back to state 1 +% if table VOI Type or Priorities changed go to state 1 +% if objective parameters changed go back to state 2 +handles.CutOffLevel = 0.01; % relative cut off level for dose vis +handles.IsoDose.NewIsoDoseFlag = false; +handles.TableChanged = false; +handles.State = 0; +handles.doseOpacity = 0.6; +handles.IsoDose.Levels = 0; +handles.dispWindow = cell(3,2); % first dimension refers to the selected + +% do not calculate / suggest isoCenter new by default +set(handles.checkIsoCenter, 'Value', 0); +set(handles.editIsoCenter,'Enable','on') + +% suppose no ct cube in HU is available (because no ct could be available) +handles.cubeHUavailable = false; +% initial startup finished +handles.initialGuiStart = false; +guidata(hObject, handles); +% eof resetGUI + +function handles = reloadGUI(hObject, handles, ct, cst) +AllVarNames = handles.AllVarNames; + +if ismember('ct',AllVarNames) + % compute HU values + if ~isfield(ct, 'cubeHU') + ct = matRad_electronDensitiesToHU(ct); + assignin('base','ct',ct); + end + if ~isfield(ct, 'cubeHU') + handles.cubeHUavailable = false; + else + handles.cubeHUavailable = true; + end +end + +%set plan if available - if not create one +try + + if ismember('pln',AllVarNames) && handles.State > 0 + % check if you are working with a valid pln + pln = evalin('base','pln'); + if ~isfield(pln,'propStf') + handles = showWarning(handles,'GUI OpeningFunc: Overwriting outdated pln format with default GUI pln'); + evalin('base','clear pln'); + getPlnFromGUI(handles); + end + setPln(handles); + elseif handles.State > 0 + getPlnFromGUI(handles); + setPln(handles); + end + +catch + handles.State = 0; + handles = showError(handles,'GUI OpeningFunc: Could not set or get pln'); +end + +% check for dij structure +if ismember('dij',AllVarNames) + handles.State = 2; +end + +% check for optimized results +if ismember('resultGUI',AllVarNames) + handles.State = 3; +end + +% set some default values +if handles.State == 2 || handles.State == 3 + set(handles.popupDisplayOption,'String','physicalDose'); + handles.SelectedDisplayOption ='physicalDose'; + handles.SelectedDisplayOptionIdx=1; +else + handles.resultGUI = []; + set(handles.popupDisplayOption,'String','no option available'); + handles.SelectedDisplayOption=''; + handles.SelectedDisplayOptionIdx=1; +end + +% precompute iso dose lines +if handles.State == 3 + handles = updateIsoDoseLineCache(handles); +end + +%per default the first beam is selected for the profile plot +handles.selectedBeam = 1; +handles.plane = get(handles.popupPlane,'Value'); +handles.DijCalcWarning = false; + +planePermute = [2 1 3]; + +% set slice slider +if handles.State > 0 + if evalin('base','exist(''pln'',''var'')') + currPln = evalin('base','pln'); + if sum(currPln.propStf.isoCenter(:)) ~= 0 + currSlice = ceil(currPln.propStf.isoCenter(1,planePermute(handles.plane))/ct.resolution.x); + else + currSlice = ceil(ct.cubeDim(planePermute(handles.plane))/2); + end + else % no pln -> no isocenter -> use middle + currSlice = ceil(ct.cubeDim(planePermute(handles.plane))/2); + end + set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... + 'Value',currSlice,... + 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); + + % define context menu for structures + for i = 1:size(cst,1) + if cst{i,5}.Visible + handles.VOIPlotFlag(i) = true; + else + handles.VOIPlotFlag(i) = false; + end + end + else + % reset slider when nothing is loaded + set(handles.sliderSlice,'Min',0,'Max',1,'Value',0,'SliderStep',[1 1]); +end + +%Initialize colormaps and windows +handles.doseColorMap = 'jet'; +handles.ctColorMap = 'bone'; +handles.cMapSize = 64; +handles.cBarChanged = true; + +%Set up the colormap selection box +availableColormaps = matRad_getColormap(); +set(handles.popupmenu_chooseColormap,'String',availableColormaps); + +currentCtMapIndex = find(strcmp(availableColormaps,handles.ctColorMap)); +currentDoseMapIndex = find(strcmp(availableColormaps,handles.doseColorMap)); + +if handles.State >= 1 + set(handles.popupmenu_chooseColormap,'Value',currentCtMapIndex); +end + +if handles.State >= 3 + set(handles.popupmenu_chooseColormap,'Value',currentDoseMapIndex); +end + +% Update handles structure +handles.profileOffset = 0; +UpdateState(handles) + +axes(handles.axesFig) + +handles.rememberCurrAxes = false; +UpdatePlot(handles) +handles.rememberCurrAxes = true; +guidata(hObject, handles); +% eof reloadGUI + +% --- Executes just before matRadGUI_export is made visible. +function matRadGUI_export_OpeningFcn(hObject, ~, handles, varargin) +%#ok<*DEFNU> +%#ok<*AGROW> +% This function has no output args, see OutputFcn. +% hObject handle to figure +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +% varargin command line arguments to matRadGUI_export (see VARARGIN) + +% variable to check whether GUI is opened or just refreshed / new data +% loaded, since resetGUI needs to distinguish at one point + +handles.initialGuiStart = true; + +%If devMode is true, error dialogs will include the full stack trace of the error +%If false, only the basic error message is shown (works for errors that +%handle the MException object) +handles.devMode = true; + +set(handles.radiobtnPlan,'value',0); + +handles = resetGUI(hObject, handles); + +%% parse variables from base workspace +AllVarNames = evalin('base','who'); +handles.AllVarNames = AllVarNames; +try + if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + ct = evalin('base','ct'); + cst = evalin('base','cst'); + %cst = setCstTable(handles,cst); + cst = generateCstTable(handles,cst); + handles.State = 1; + cst = matRad_computeVoiContoursWrapper(cst,ct); + assignin('base','cst',cst); + + elseif ismember('ct',AllVarNames) && ~ismember('cst',AllVarNames) + handles = showError(handles,'GUI OpeningFunc: could not find cst file'); + elseif ~ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + handles = showError(handles,'GUI OpeningFunc: could not find ct file'); + end +catch + handles = showError(handles,'GUI OpeningFunc: Could not load ct and cst file'); +end + +if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + handles = reloadGUI(hObject, handles, ct, cst); +else + handles = reloadGUI(hObject, handles); +end + +guidata(hObject, handles); + + +function Callback_StructVisibilty(source,~) + +handles = guidata(findobj('Name','matRadGUI')); + +contextUiChildren = get(get(handles.figure1,'UIContextMenu'),'Children'); + +Idx = find(strcmp(get(contextUiChildren,'Label'),get(source,'Label'))); +if strcmp(get(source,'Checked'),'on') + set(contextUiChildren(Idx),'Checked','off'); +else + set(contextUiChildren(Idx),'Checked','on'); +end +%guidata(findobj('Name','matRadGUI_export'), handles); +UpdatePlot(handles); + +Update +% --- Outputs from this function are returned to the command line. +function varargout = matRadGUI_export_OutputFcn(~, ~, handles) +% varargout cell array for returning output args (see VARARGOUT); +% hObject handle to figure +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Get default command line output from handles structure +varargout{1} = handles.output; + +% set focus on error dialog +if isfield(handles,'ErrorDlg') + figure(handles.ErrorDlg) +end + +% --- Executes on button press in btnLoadMat. +function btnLoadMat_Callback(hObject, ~, handles) +% hObject handle to btnLoadMat (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +[FileName, FilePath] = uigetfile('*.mat'); +if FileName == 0 % user pressed cancel --> do nothing. + return; +end + +handles = resetGUI(hObject, handles); + +try + + % delete existing workspace - parse variables from base workspace + AllVarNames = evalin('base','who'); + RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; + + for i = 1:length(RefVarNames) + if sum(ismember(AllVarNames,RefVarNames{i}))>0 + evalin('base',['clear ', RefVarNames{i}]); + end + end + + % read new data + load([FilePath FileName]); + set(handles.legendTable,'String',{'no data loaded'}); + set(handles.popupDisplayOption,'String','no option available'); + +catch ME + handles = showError(handles,'LoadMatFileFnc: Could not load *.mat file',ME); + + guidata(hObject,handles); + UpdateState(handles); + UpdatePlot(handles); + return +end + +try + generateCstTable(handles,cst); + handles.TableChanged = false; + set(handles.popupTypeOfPlot,'Value',1); + cst = matRad_computeVoiContoursWrapper(cst,ct); + + assignin('base','ct',ct); + assignin('base','cst',cst); + handles.State = 1; +catch ME + handles = showError(handles,'LoadMatFileFnc: Could not load *.mat file',ME); +end + +% check if a optimized plan was loaded +if exist('stf','var') + assignin('base','stf',stf); +end +if exist('pln','var') + assignin('base','pln',pln); +end +if exist('dij','var') + assignin('base','dij',dij); +end +% if exist('stf','var') && exist('dij','var') +% handles.State = 2; +% end + +if exist('resultGUI','var') + assignin('base','resultGUI',resultGUI); + % handles.State = 3; + % handles.SelectedDisplayOption ='physicalDose'; +end + +% recheck current workspace variables +AllVarNames = evalin('base','who'); +handles.AllVarNames = AllVarNames; + +if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + handles = reloadGUI(hObject, handles, ct, cst); +else + handles = reloadGUI(hObject, handles); +end + +guidata(hObject,handles); + +% --- Executes on button press in btnLoadDicom. +function btnLoadDicom_Callback(hObject, ~, handles) +% hObject handle to btnLoadDicom (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +try + % delete existing workspace - parse variables from base workspace + set(handles.popupDisplayOption,'String','no option available'); + AllVarNames = evalin('base','who'); + RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; + for i = 1:length(RefVarNames) + if sum(ismember(AllVarNames,RefVarNames{i}))>0 + evalin('base',['clear ', RefVarNames{i}]); + end + end + handles.State = 0; + matRad_importDicomGUI; + +catch + handles = showError(handles,'DicomImport: Could not import data'); +end +UpdateState(handles); +guidata(hObject,handles); + + +% --- Executes on button press in btn_export. +function btn_export_Callback(hObject, eventdata, handles) +% hObject handle to btn_export (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +try + matRad_exportGUI; +catch + handles = showError(handles,'Could not export data'); +end +UpdateState(handles); +guidata(hObject,handles); + +function editBixelWidth_Callback(hObject, ~, handles) +% hObject handle to editBixelWidth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of editBixelWidth as text +% str2double(get(hObject,'String')) returns contents of editBixelWidth as a double +getPlnFromGUI(handles); +if handles.State > 0 + handles.State = 1; + UpdateState(handles); + guidata(hObject,handles); +end + +function editGantryAngle_Callback(hObject, ~, handles) +% hObject handle to editGantryAngle (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of editGantryAngle as text +% str2double(get(hObject,'String')) returns contents of editGantryAngle as a double +getPlnFromGUI(handles); +if handles.State > 0 + handles.State = 1; + UpdateState(handles); + UpdatePlot(handles); + guidata(hObject,handles); +end + +function editCouchAngle_Callback(hObject, ~, handles) +% hObject handle to editCouchAngle (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of editCouchAngle as text +% str2double(get(hObject,'String')) returns contents of editCouchAngle as a double +getPlnFromGUI(handles); +if handles.State > 0 + handles.State = 1; + UpdateState(handles); + guidata(hObject,handles); +end + +% --- Executes on selection change in popupRadMode. +function popupRadMode_Callback(hObject, eventdata, handles) +% hObject handle to popupRadMode (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +checkRadiationComposition(handles); +contents = cellstr(get(hObject,'String')); +RadIdentifier = contents{get(hObject,'Value')}; +contentPopUp = get(handles.popMenuBioOpt,'String'); +switch RadIdentifier + case 'photons' + + set(handles.popMenuBioOpt,'Enable','off'); + ix = find(strcmp(contentPopUp,'none')); + set(handles.popMenuBioOpt,'Value',ix); + set(handles.btnSetTissue,'Enable','off'); + + set(handles.btnRunSequencing,'Enable','on'); + set(handles.btnRunDAO,'Enable','on'); + set(handles.radiobutton3Dconf,'Enable','on'); + set(handles.txtSequencing,'Enable','on'); + set(handles.editSequencingLevel,'Enable','on'); + + case 'protons' + + set(handles.popMenuBioOpt,'Enable','on'); + ix = find(strcmp(contentPopUp,'const_RBExD')); + set(handles.popMenuBioOpt,'Value',ix); + set(handles.btnSetTissue,'Enable','on'); + + set(handles.btnSetTissue,'Enable','off'); + set(handles.btnRunSequencing,'Enable','off'); + set(handles.btnRunDAO,'Enable','off'); + set(handles.radiobutton3Dconf,'Enable','off'); + set(handles.txtSequencing,'Enable','off'); + set(handles.editSequencingLevel,'Enable','off'); + + case 'carbon' + + set(handles.popMenuBioOpt,'Enable','on'); + ix = find(strcmp(contentPopUp,'LEMIV_RBExD')); + set(handles.popMenuBioOpt,'Value',ix); + set(handles.btnSetTissue,'Enable','on'); + + set(handles.btnRunSequencing,'Enable','off'); + set(handles.btnRunDAO,'Enable','off'); + set(handles.radiobutton3Dconf,'Enable','off'); + set(handles.txtSequencing,'Enable','off'); + set(handles.editSequencingLevel,'Enable','off'); +end + +if handles.State > 0 + pln = evalin('base','pln'); + if handles.State > 0 && ~strcmp(contents(get(hObject,'Value')),pln.radiationMode) + + % new radiation modality is photons -> just keep physicalDose + if strcmp(contents(get(hObject,'Value')),'photons') + try + AllVarNames = evalin('base','who'); + if ismember('resultGUI',AllVarNames) + resultGUI = evalin('base','resultGUI'); + if isfield(resultGUI,'alpha'); resultGUI = rmfield(resultGUI,'alpha'); end + if isfield(resultGUI,'beta'); resultGUI = rmfield(resultGUI,'beta'); end + if isfield(resultGUI,'RBExDose'); resultGUI = rmfield(resultGUI,'RBExDose');end + if isfield(resultGUI,'RBE'); resultGUI = rmfield(resultGUI,'RBE'); end + assignin('base','resultGUI',resultGUI); + handles = updateIsoDoseLineCache(handles); + end + catch + end + elseif strcmp(contents(get(hObject,'Value')),'protons') + try + AllVarNames = evalin('base','who'); + if ismember('resultGUI',AllVarNames) + resultGUI = evalin('base','resultGUI'); + if isfield(resultGUI,'alpha'); resultGUI = rmfield(resultGUI,'alpha');end + if isfield(resultGUI,'beta'); resultGUI = rmfield(resultGUI,'beta'); end + if isfield(resultGUI,'RBE'); resultGUI = rmfield(resultGUI,'RBE'); end + assignin('base','resultGUI',resultGUI); + handles = updateIsoDoseLineCache(handles); + end + catch + end + end + + guidata(hObject,handles); + UpdatePlot(handles); + + getPlnFromGUI(handles); + handles.State = 1; + UpdateState(handles); + + end + +guidata(hObject,handles); + +end + + +% --- Executes on button press in btnCalcDose. +function btnCalcDose_Callback(hObject, ~, handles) +% hObject handle to btnCalcDose (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% http://stackoverflow.com/questions/24703962/trigger-celleditcallback-before-button-callback +% http://www.mathworks.com/matlabcentral/newsreader/view_thread/332613 +% wait some time until the CallEditCallback is finished +% Callback triggers the cst saving mechanism from GUI +try + % indicate that matRad is busy + % change mouse pointer to hour glass + Figures = gcf;%findobj('type','figure'); + set(Figures, 'pointer', 'watch'); + drawnow; + % disable all active objects + InterfaceObj = findobj(Figures,'Enable','on'); + set(InterfaceObj,'Enable','off'); + + %pause(0.1); + %uiTable_CellEditCallback(hObject,[],handles); + %pause(0.3); + + %% get cst from table + %if ~getCstTable(handles) + % return + %end + % read plan from gui and save it to workspace + % gets also IsoCenter from GUI if checkbox is not checked + getPlnFromGUI(handles); + + % get default iso center as center of gravity of all targets if not + % already defined + pln = evalin('base','pln'); + + if length(pln.propStf.gantryAngles) ~= length(pln.propStf.couchAngles) + handles = showWarning(handles,'number of gantryAngles != number of couchAngles'); + end + %% + if ~checkRadiationComposition(handles); + fileName = [pln.radiationMode '_' pln.machine]; + handles = showError(handles,errordlg(['Could not find the following machine file: ' fileName ])); + guidata(hObject,handles); + return; + end + + %% check if isocenter is already set + if ~isfield(pln.propStf,'isoCenter') + handles = showWarning(handles,'no iso center set - using center of gravity based on structures defined as TARGET'); + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); + assignin('base','pln',pln); + elseif ~get(handles.checkIsoCenter,'Value') + if ~strcmp(get(handles.editIsoCenter,'String'),'multiple isoCenter') + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*str2num(get(handles.editIsoCenter,'String')); + end + end + +catch ME + handles = showError(handles,'CalcDoseCallback: Error in preprocessing!',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +% generate steering file +try + currPln = evalin('base','pln'); + % if we run 3d conf opt -> hijack runDao to trigger computation of + % connected bixels + if strcmp(pln.radiationMode,'photons') && get(handles.radiobutton3Dconf,'Value') + currpln.propOpt.runDAO = true; + end + stf = matRad_generateStf(evalin('base','ct'),... + evalin('base','cst'),... + currPln); + assignin('base','stf',stf); +catch ME + handles = showError(handles,'CalcDoseCallback: Error in steering file generation!',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +% carry out dose calculation +try + if strcmp(pln.radiationMode,'photons') + dij = matRad_calcPhotonDose(evalin('base','ct'),stf,pln,evalin('base','cst')); + elseif strcmp(pln.radiationMode,'protons') || strcmp(pln.radiationMode,'carbon') + dij = matRad_calcParticleDose(evalin('base','ct'),stf,pln,evalin('base','cst')); + end + + % assign results to base worksapce + assignin('base','dij',dij); + handles.State = 2; + handles.TableChanged = false; + UpdateState(handles); + UpdatePlot(handles); + guidata(hObject,handles); +catch ME + handles = showError(handles,'CalcDoseCallback: Error in dose calculation!',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +% change state from busy to normal +set(Figures, 'pointer', 'arrow'); +set(InterfaceObj,'Enable','on'); + +guidata(hObject,handles); + + + +%% plots ct and distributions +function UpdatePlot(handles) + +%profile on; + +axes(handles.axesFig); + +% this is necessary to prevent multiple callbacks of update plot drawing on +% top of each other in matlab <2014 +drawnow; + +defaultFontSize = 8; +currAxes = axis(handles.axesFig); +AxesHandlesCT_Dose = gobjects(0); +AxesHandlesVOI = cell(0); +AxesHandlesIsoDose = gobjects(0); + +if handles.State == 0 + cla reset + return +elseif handles.State > 0 + ct = evalin('base','ct'); + cst = evalin('base','cst'); + pln = evalin('base','pln'); +end + +%% state 3 indicates that a optimization has been performed + AllVarNames = evalin('base','who'); +if ismember('resultGUI',AllVarNames) + Result = evalin('base','resultGUI'); +end + +if exist('Result','var') + if ~isempty(Result) && ~isempty(ct.cubeHU) && ~isfield(handles,'DispInfo') + + DispInfo = fieldnames(Result); + + for i = 1:size(DispInfo,1) + + % delete weight vectors in Result struct for plotting + if isstruct(Result.(DispInfo{i,1})) || isvector(Result.(DispInfo{i,1})) + Result = rmfield(Result,DispInfo{i,1}); + DispInfo{i,2}=false; + else + %second dimension indicates if it should be plotted + DispInfo{i,2} = true; + % determine units + if strfind(DispInfo{i,1},'physicalDose') + DispInfo{i,3} = '[Gy]'; + elseif strfind(DispInfo{i,1},'alpha') + DispInfo{i,3} = '[Gy^{-1}]'; + elseif strfind(DispInfo{i,1},'beta') + DispInfo{i,3} = '[Gy^{-2}]'; + elseif strfind(DispInfo{i,1},'RBExD') + DispInfo{i,3} = '[Gy(RBE)]'; + elseif strfind(DispInfo{i,1},'LET') + DispInfo{i,3} = '[keV/um]'; + else + DispInfo{i,3} = '[a.u.]'; + end + DispInfo{i,4} = []; % optional for the future: color range for plotting + DispInfo{i,5} = []; % optional for the future: min max values + end + end + + set(handles.popupDisplayOption,'String',fieldnames(Result)); + if sum(strcmp(handles.SelectedDisplayOption,fieldnames(Result))) == 0 + handles.SelectedDisplayOption = DispInfo{find([DispInfo{:,2}],1,'first'),1}; + end + set(handles.popupDisplayOption,'Value',find(strcmp(handles.SelectedDisplayOption,fieldnames(Result)))); + + end +end + +%% set and get required variables +plane = get(handles.popupPlane,'Value'); +slice = round(get(handles.sliderSlice,'Value')); +hold(handles.axesFig,'on'); +if get(handles.popupTypeOfPlot,'Value')==1 + set(handles.axesFig,'YDir','Reverse'); +end + +%% Remove colorbar? +plotColorbarSelection = get(handles.popupmenu_chooseColorData,'Value'); + +if get(handles.popupTypeOfPlot,'Value')==2 || plotColorbarSelection == 1 + if isfield(handles,'cBarHandel') + delete(handles.cBarHandel); + end + %The following seems to be necessary as MATLAB messes up some stuff + %with the handle storage + ch = findall(gcf,'tag','Colorbar'); + if ~isempty(ch) + delete(ch); + end +end + +selectIx = get(handles.popupmenu_chooseColorData,'Value'); + +cla(handles.axesFig); +%% plot ct - if a ct cube is available and type of plot is set to 1 and not 2; 1 indicate cube plotting and 2 profile plotting +if ~isempty(ct) && get(handles.popupTypeOfPlot,'Value')==1 + + if selectIx == 3 + ctIx = 2; + else + ctIx = selectIx; + end + + if isfield(ct, 'cube') + plotCtCube = ct.cube; + else + plotCtCube = ct.cubeHU; + end + + ctMap = matRad_getColormap(handles.ctColorMap,handles.cMapSize); + + if isempty(handles.dispWindow{ctIx,2}) + handles.dispWindow{ctIx,2} = [min(reshape([ct.cubeHU{:}],[],1)) max(reshape([ct.cubeHU{:}],[],1))]; + end + + if get(handles.radiobtnCT,'Value') + [AxesHandlesCT_Dose(end+1),~,handles.dispWindow{ctIx,1}] = matRad_plotCtSlice(handles.axesFig,plotCtCube,1,plane,slice,ctMap,handles.dispWindow{ctIx,1}); + + % plot colorbar? If 1 the user asked for the CT + if plotColorbarSelection == 2 && handles.cBarChanged + %Plot the colorbar + handles.cBarHandel = matRad_plotColorbar(handles.axesFig,ctMap,handles.dispWindow{ctIx,1},'fontsize',defaultFontSize); + %adjust lables + if isfield(ct,'cubeHU') + set(get(handles.cBarHandel,'ylabel'),'String', 'Hounsfield Units','fontsize',defaultFontSize); + else + set(get(handles.cBarHandel,'ylabel'),'String', 'Electron Density','fontsize',defaultFontSize); + end + % do not interprete as tex syntax + set(get(handles.cBarHandel,'ylabel'),'interpreter','none'); + end + end +end + +%% plot dose cube +if handles.State >= 1 && get(handles.popupTypeOfPlot,'Value')== 1 && exist('Result','var') + doseMap = matRad_getColormap(handles.doseColorMap,handles.cMapSize); + doseIx = 3; + % if the selected display option doesn't exist then simply display + % the first cube of the Result struct + if ~isfield(Result,handles.SelectedDisplayOption) + CubeNames = fieldnames(Result); + handles.SelectedDisplayOption = CubeNames{1,1}; + end + + dose = Result.(handles.SelectedDisplayOption); + + % dose colorwash + if ~isempty(dose) && ~isvector(dose) + + if isempty(handles.dispWindow{doseIx,2}) + handles.dispWindow{doseIx,2} = [min(dose(:)) max(dose(:))]; % set min and max dose values + end + + if get(handles.radiobtnDose,'Value') + [doseHandle,~,handles.dispWindow{doseIx,1}] = matRad_plotDoseSlice(handles.axesFig,dose,plane,slice,handles.CutOffLevel,handles.doseOpacity,doseMap,handles.dispWindow{doseIx,1}); + AxesHandlesCT_Dose(end+1) = doseHandle; + end + + % plot colorbar? + if plotColorbarSelection > 2 && handles.cBarChanged + %Plot the colorbar + handles.cBarHandel = matRad_plotColorbar(handles.axesFig,doseMap,handles.dispWindow{selectIx,1},'fontsize',defaultFontSize); + %adjust lables + Idx = find(strcmp(handles.SelectedDisplayOption,DispInfo(:,1))); + set(get(handles.cBarHandel,'ylabel'),'String', [DispInfo{Idx,1} ' ' DispInfo{Idx,3} ],'fontsize',defaultFontSize); + % do not interprete as tex syntax + set(get(handles.cBarHandel,'ylabel'),'interpreter','none'); + end + end + + + %% plot iso dose lines + if get(handles.radiobtnIsoDoseLines,'Value') + plotLabels = get(handles.radiobtnIsoDoseLinesLabels,'Value') == 1; + + %Sanity Check for Contours, which actually should have been + %computed before calling UpdatePlot + if ~isfield(handles.IsoDose,'Contours') + try + handles.IsoDose.Contours = matRad_computeIsoDoseContours(dose,handles.IsoDose.Levels); + catch + %If the computation didn't work, we set the field to + %empty, which will force matRad_plotIsoDoseLines to use + %matlabs contour function instead of repeating the + %failing computation every time + handles.IsoDose.Contours = []; + warning('Could not compute isodose lines! Will try slower contour function!'); + end + end + AxesHandlesIsoDose = matRad_plotIsoDoseLines(handles.axesFig,dose,handles.IsoDose.Contours,handles.IsoDose.Levels,plotLabels,plane,slice,doseMap,handles.dispWindow{doseIx,1},'LineWidth',1.5); + end +end + +selectIx = get(handles.popupmenu_chooseColorData,'Value'); +set(handles.txtMinVal,'String',num2str(handles.dispWindow{selectIx,2}(1,1))); +set(handles.txtMaxVal,'String',num2str(handles.dispWindow{selectIx,2}(1,2))); + +%% plot VOIs +if get(handles.radiobtnContour,'Value') && get(handles.popupTypeOfPlot,'Value')==1 && handles.State>0 + AxesHandlesVOI = [AxesHandlesVOI matRad_plotVoiContourSlice(handles.axesFig,cst,ct,1,handles.VOIPlotFlag,plane,slice,[],'LineWidth',2)]; +end + +%% Set axis labels and plot iso center +matRad_plotAxisLabels(handles.axesFig,ct,plane,slice,defaultFontSize); + +if get(handles.radioBtnIsoCenter,'Value') == 1 && get(handles.popupTypeOfPlot,'Value') == 1 && ~isempty(pln) + hIsoCenterCross = matRad_plotIsoCenterMarker(handles.axesFig,pln,ct,plane,slice); +end + +if get(handles.radiobtnPlan,'value') == 1 && ~isempty(pln) + matRad_plotProjectedGantryAngles(handles.axesFig,pln,ct,plane); +end + +% the following line ensures the plotting order (optional) +% set(gca,'Children',[AxesHandlesCT_Dose hIsoCenterCross AxesHandlesIsoDose AxesHandlesVOI ]); + +%set axis ratio +ratios = [1/ct.resolution.x 1/ct.resolution.y 1/ct.resolution.z]; +set(handles.axesFig,'DataAspectRatioMode','manual'); +if plane == 1 + res = [ratios(3) ratios(2)]./max([ratios(3) ratios(2)]); + set(handles.axesFig,'DataAspectRatio',[res 1]) +elseif plane == 2 % sagittal plane + res = [ratios(3) ratios(1)]./max([ratios(3) ratios(1)]); + set(handles.axesFig,'DataAspectRatio',[res 1]) +elseif plane == 3 % Axial plane + res = [ratios(2) ratios(1)]./max([ratios(2) ratios(1)]); + set(handles.axesFig,'DataAspectRatio',[res 1]) +end + + +%% profile plot +if get(handles.popupTypeOfPlot,'Value') == 2 && exist('Result','var') + % set SAD + fileName = [pln.radiationMode '_' pln.machine]; + try + load(fileName); + SAD = machine.meta.SAD; + catch + error(['Could not find the following machine file: ' fileName ]); + end + + % clear view and initialize some values + cla(handles.axesFig,'reset') + set(gca,'YDir','normal'); + ylabel('{\color{black}dose [Gy]}') + cColor={'black','green','magenta','cyan','yellow','red','blue'}; + + % Rotate the system into the beam. + % passive rotation & row vector multiplication & inverted rotation requires triple matrix transpose + rotMat_system_T = transpose(matRad_getRotationMatrix(pln.propStf.gantryAngles(handles.selectedBeam),pln.propStf.couchAngles(handles.selectedBeam))); + + if strcmp(handles.ProfileType,'longitudinal') + sourcePointBEV = [handles.profileOffset -SAD 0]; + targetPointBEV = [handles.profileOffset SAD 0]; + elseif strcmp(handles.ProfileType,'lateral') + sourcePointBEV = [-SAD handles.profileOffset 0]; + targetPointBEV = [ SAD handles.profileOffset 0]; + end + + rotSourcePointBEV = sourcePointBEV * rotMat_system_T; + rotTargetPointBEV = targetPointBEV * rotMat_system_T; + + % perform raytracing on the central axis of the selected beam, use unit + % electron density for plotting against the geometrical depth + [~,l,rho,~,ix] = matRad_siddonRayTracer(pln.propStf.isoCenter(handles.selectedBeam,:),ct.resolution,rotSourcePointBEV,rotTargetPointBEV,{0*ct.cubeHU{1}+1}); + d = [0 l .* rho{1}]; + % Calculate accumulated d sum. + vX = cumsum(d(1:end-1)); + + % this step is necessary if visualization is set to profile plot + % and another optimization is carried out - set focus on GUI + figHandles = get(0,'Children'); + idxHandle = []; + if ~isempty(figHandles) + v=version; + if str2double(v(1:3))>= 8.5 + idxHandle = strcmp({figHandles(:).Name},'matRadGUI'); + else + idxHandle = strcmp(get(figHandles,'Name'),'matRadGUI'); + end + end + figure(figHandles(idxHandle)); + + % plot physical dose + Content = get(handles.popupDisplayOption,'String'); + SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; + if sum(strcmp(SelectedCube,{'physicalDose','effect','RBExDose','alpha','beta','RBE'})) > 0 + Suffix = ''; + else + Idx = find(SelectedCube == '_'); + Suffix = SelectedCube(Idx:end); + end + + mPhysDose = Result.(['physicalDose' Suffix]); + PlotHandles{1} = plot(handles.axesFig,vX,mPhysDose(ix),'color',cColor{1,1},'LineWidth',3); hold on; + PlotHandles{1,2} ='physicalDose'; + ylabel(handles.axesFig,'dose in [Gy]'); + set(handles.axesFig,'FontSize',defaultFontSize); + + % plot counter + Cnt=2; + + if isfield(Result,['RBE' Suffix]) + + %disbale specific plots + %DispInfo{6,2}=0; + %DispInfo{5,2}=0; + %DispInfo{2,2}=0; + + % generate two lines for ylabel + StringYLabel1 = '\fontsize{8}{\color{red}RBE x dose [Gy(RBE)] \color{black}dose [Gy] '; + StringYLabel2 = ''; + for i=1:1:size(DispInfo,1) + if DispInfo{i,2} && sum(strcmp(DispInfo{i,1},{['effect' Suffix],['alpha' Suffix],['beta' Suffix]})) > 0 + %physicalDose is already plotted and RBExD vs RBE is plotted later with plotyy + if ~strcmp(DispInfo{i,1},['RBExDose' Suffix]) &&... + ~strcmp(DispInfo{i,1},['RBE' Suffix]) && ... + ~strcmp(DispInfo{i,1},['physicalDose' Suffix]) + + mCube = Result.([DispInfo{i,1}]); + PlotHandles{Cnt,1} = plot(handles.axesFig,vX,mCube(ix),'color',cColor{1,Cnt},'LineWidth',3);hold on; + PlotHandles{Cnt,2} = DispInfo{i,1}; + StringYLabel2 = [StringYLabel2 ' \color{' cColor{1,Cnt} '}' DispInfo{i,1} ' [' DispInfo{i,3} ']']; + Cnt = Cnt+1; + end + end + end + StringYLabel2 = [StringYLabel2 '}']; + % always plot RBExD against RBE + mRBExDose = Result.(['RBExDose' Suffix]); + vBED = mRBExDose(ix); + mRBE = Result.(['RBE' Suffix]); + vRBE = mRBE(ix); + + % plot biological dose against RBE + [ax, PlotHandles{Cnt,1}, PlotHandles{Cnt+1,1}]=plotyy(handles.axesFig,vX,vBED,vX,vRBE,'plot');hold on; + PlotHandles{Cnt,2}='RBExDose'; + PlotHandles{Cnt+1,2}='RBE'; + + % set plotyy properties + set(get(ax(2),'Ylabel'),'String','RBE [a.u.]','FontSize',8); + ylabel({StringYLabel1;StringYLabel2}) + set(PlotHandles{Cnt,1},'Linewidth',4,'color','r'); + set(PlotHandles{Cnt+1,1},'Linewidth',3,'color','b'); + set(ax(1),'ycolor','r') + set(ax(2),'ycolor','b') + set(ax,'FontSize',8); + Cnt=Cnt+2; + end + + % asses target coordinates + tmpPrior = intmax; + tmpSize = 0; + for i=1:size(cst,1) + if strcmp(cst{i,3},'TARGET') && tmpPrior >= cst{i,5}.Priority && tmpSize 0 + AllVarNames = evalin('base','who'); + if ismember('resultGUI',AllVarNames) + Result = evalin('base','resultGUI'); + end + + if ismember('stf',AllVarNames) + stf = evalin('base','stf'); + else + stf = []; + end + + ct = evalin('base','ct'); + cst = evalin('base','cst'); + pln = evalin('base','pln'); +end + +oldView = get(axesFig3D,'View'); + +cla(axesFig3D); +%delete(allchild(axesFig3D)); + +%test = allchild(axesFig3D); + +plane = get(handles.popupPlane,'Value'); +slice = round(get(handles.sliderSlice,'Value')); +defaultFontSize = 8; + +%Check if we need to precompute the surface data +if size(cst,2) < 8 + cst = matRad_computeAllVoiSurfaces(ct,cst); + assignin('base','cst',cst); +end + +set(fig3D,'Color',0.5*[1 1 1]); +set(axesFig3D,'Color',1*[0 0 0]); + +%% Plot 3D structures +hold(axesFig3D,'on'); +if get(handles.radiobtnContour,'Value') && handles.State>0 + voiPatches = matRad_plotVois3D(axesFig3D,ct,cst,handles.VOIPlotFlag,colorcube); +end + +%% plot the CT slice +if get(handles.radiobtnCT,'Value') + window = handles.dispWindow{2,1}; %(2 for ct) + ctMap = matRad_getColormap(handles.ctColorMap,handles.cMapSize); + ctHandle = matRad_plotCtSlice3D(axesFig3D,ct,1,plane,slice,ctMap,window); +end + +%% plot the dose slice +if handles.State >= 1 && exist('Result','var') + doseMap = matRad_getColormap(handles.doseColorMap,handles.cMapSize); + doseIx = 3; + % if the selected display option doesn't exist then simply display + % the first cube of the Result struct + if ~isfield(Result,handles.SelectedDisplayOption) + CubeNames = fieldnames(Result); + handles.SelectedDisplayOption = CubeNames{1,1}; + end + + dose = Result.(handles.SelectedDisplayOption); + + % dose colorwash + if ~isempty(dose) && ~isvector(dose) + + if isempty(handles.dispWindow{doseIx,2}) + handles.dispWindow{doseIx,2} = [min(dose(:)) max(dose(:))]; % set min and max dose values + end + + if get(handles.radiobtnDose,'Value') + [doseHandle,~,handles.dispWindow{doseIx,1}] = matRad_plotDoseSlice3D(axesFig3D,ct,dose,plane,slice,handles.CutOffLevel,handles.doseOpacity,doseMap,handles.dispWindow{doseIx,1}); + end + if get(handles.radiobtnIsoDoseLines,'Value') + matRad_plotIsoDoseLines3D(axesFig3D,ct,dose,handles.IsoDose.Contours,handles.IsoDose.Levels,plane,slice,doseMap,handles.dispWindow{doseIx,1},'LineWidth',1.5); + end + end +end + +if get(handles.radiobtnPlan,'Value') + matRad_plotPlan3D(axesFig3D,pln,stf); +end + +%hLight = light('Parent',axesFig3D); +%camlight(hLight,'left'); +%lighting('gouraud'); + +xlabel(axesFig3D,'x [voxels]','FontSize',defaultFontSize) +ylabel(axesFig3D,'y [voxels]','FontSize',defaultFontSize) +zlabel(axesFig3D,'z [voxels]','FontSize',defaultFontSize) +title(axesFig3D,'matRad 3D view'); + +% set axis ratio +ratios = [1 1 1]; %[1/ct.resolution.x 1/ct.resolution.y 1/ct.resolution.z]; +ratios = ratios([2 1 3]); +set(axesFig3D,'DataAspectRatioMode','manual'); +set(axesFig3D,'DataAspectRatio',ratios./max(ratios)); + +set(axesFig3D,'Ydir','reverse'); + +set(axesFig3D,'view',oldView); + + +% --- Executes on selection change in popupPlane. +function popupPlane_Callback(hObject, ~, handles) +% hObject handle to popupPlane (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns popupPlane contents as cell array +% contents{get(hObject,'Value')} returns selected item from popupPlane + +% set slice slider +handles.plane = get(handles.popupPlane,'value'); +try + if handles.State > 0 + ct = evalin('base', 'ct'); + set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... + 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); + if handles.State < 3 + set(handles.sliderSlice,'Value',round(ct.cubeDim(handles.plane)/2)); + else + pln = evalin('base','pln'); + + if handles.plane == 1 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,2)/ct.resolution.x)); + elseif handles.plane == 2 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,1)/ct.resolution.y)); + elseif handles.plane == 3 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,3)/ct.resolution.z)); + end + + end + end +catch +end + +handles.rememberCurrAxes = false; +UpdatePlot(handles); +handles.rememberCurrAxes = true; +guidata(hObject,handles); + +% --- Executes on slider movement. +function sliderSlice_Callback(~, ~, handles) +% hObject handle to sliderSlice (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'Value') returns position of slider +% get(hObject,'Min') and get(hObject,'Max') to determine range of slider +UpdatePlot(handles) + +% --- Executes on button press in radiobtnContour. +function radiobtnContour_Callback(~, ~, handles) +% hObject handle to radiobtnContour (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobtnContour +UpdatePlot(handles) + +% --- Executes on button press in radiobtnDose. +function radiobtnDose_Callback(~, ~, handles) +% hObject handle to radiobtnDose (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobtnDose +UpdatePlot(handles) + +% --- Executes on button press in radiobtnIsoDoseLines. +function radiobtnIsoDoseLines_Callback(~, ~, handles) +% hObject handle to radiobtnIsoDoseLines (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobtnIsoDoseLines +UpdatePlot(handles) + +% --- Executes on button press in btnOptimize. +function btnOptimize_Callback(hObject, eventdata, handles) +% hObject handle to btnOptimize (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +try + % indicate that matRad is busy + % change mouse pointer to hour glass + Figures = gcf;%findobj('type','figure'); + set(Figures, 'pointer', 'watch'); + drawnow; + % disable all active objects + InterfaceObj = findobj(Figures,'Enable','on'); + set(InterfaceObj,'Enable','off'); + % wait until the table is updated + btnTableSave_Callback([],[],handles); %We don't need it? + + + % if a critical change to the cst has been made which affects the dij matrix + if handles.DijCalcWarning == true + + choice = questdlg('Overlap priorites of OAR constraints have been edited, a new OAR VOI was added or a critical row constraint was deleted. A new Dij calculation might be necessary.', ... + 'Title','Cancel','Calculate Dij then Optimize','Optimze directly','Optimze directly'); + + switch choice + case 'Cancel' + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; + case 'Calculate dij again and optimize' + handles.DijCalcWarning = false; + btnCalcDose_Callback(hObject, eventdata, handles) + case 'Optimze directly' + handles.DijCalcWarning = false; + end + end + + pln = evalin('base','pln'); + ct = evalin('base','ct'); + + % optimize + if get(handles.radiobutton3Dconf,'Value') && strcmp(handles.Modalities{get(handles.popupRadMode,'Value')},'photons') + % conformal plan if photons and 3d conformal + if ~matRad_checkForConnectedBixelRows(evalin('base','stf')) + error('disconnetced dose influence data in BEV - run dose calculation again with consistent settings'); + end + [resultGUIcurrentRun,usedOptimizer] = matRad_fluenceOptimization(matRad_collapseDij(evalin('base','dij')),evalin('base','cst'),pln); + resultGUIcurrentRun.w = resultGUIcurrentRun.w * ones(evalin('base','dij.totalNumOfBixels'),1); + resultGUIcurrentRun.wUnsequenced = resultGUIcurrentRun.w; + else + if pln.propOpt.runDAO + if ~matRad_checkForConnectedBixelRows(evalin('base','stf')) + error('disconnetced dose influence data in BEV - run dose calculation again with consistent settings'); + end + end + + [resultGUIcurrentRun,usedOptimizer] = matRad_fluenceOptimization(evalin('base','dij'),evalin('base','cst'),pln); + end + + %if resultGUI already exists then overwrite the "standard" fields + AllVarNames = evalin('base','who'); + if ismember('resultGUI',AllVarNames) + resultGUI = evalin('base','resultGUI'); + sNames = fieldnames(resultGUIcurrentRun); + oldNames = fieldnames(resultGUI); + if(length(oldNames) > length(sNames)) + for j = 1:length(oldNames) + if strfind(oldNames{j}, 'beam') + resultGUI = rmfield(resultGUI, oldNames{j}); + end + end + end + for j = 1:length(sNames) + resultGUI.(sNames{j}) = resultGUIcurrentRun.(sNames{j}); + end + else + resultGUI = resultGUIcurrentRun; + end + assignin('base','resultGUI',resultGUI); + + % set some values + if handles.plane == 1 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,2)/ct.resolution.x)); + elseif handles.plane == 2 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,1)/ct.resolution.y)); + elseif handles.plane == 3 + set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,3)/ct.resolution.z)); + end + + handles.State = 3; + handles.SelectedDisplayOptionIdx = 1; + if strcmp(pln.radiationMode,'carbon') || (strcmp(pln.radiationMode,'protons') && strcmp(pln.propOpt.bioOptimization,'const_RBExD')) + handles.SelectedDisplayOption = 'RBExDose'; + else + handles.SelectedDisplayOption = 'physicalDose'; + end + handles.selectedBeam = 1; + % check IPOPT status and return message for GUI user if no DAO or + % particles + if ~pln.propOpt.runDAO || ~strcmp(pln.radiationMode,'photons') + CheckOptimizerStatus(usedOptimizer,'Fluence') + end + +catch ME + handles = showError(handles,'OptimizeCallback: Could not optimize!',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +% perform sequencing and DAO +try + + %% sequencing + if strcmp(pln.radiationMode,'photons') && (pln.propOpt.runSequencing || pln.propOpt.runDAO) + % resultGUI = matRad_xiaLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... + % ,get(handles.editSequencingLevel,'Value')); + % resultGUI = matRad_engelLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... + % ,str2double(get(handles.editSequencingLevel,'String'))); + resultGUI = matRad_siochiLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... + ,str2double(get(handles.editSequencingLevel,'String'))); + + assignin('base','resultGUI',resultGUI); + end + +catch ME + handles = showError(handles,'OptimizeCallback: Could not perform sequencing',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +try + %% DAO + if strcmp(pln.radiationMode,'photons') && pln.propOpt.runDAO + handles = showWarning(handles,['Observe: You are running direct aperture optimization' filesep 'This is experimental code that has not been thoroughly debugged - especially in combination with constrained optimization.']); + [resultGUI,usedOptimizer] = matRad_directApertureOptimization(evalin('base','dij'),evalin('base','cst'),... + resultGUI.apertureInfo,resultGUI,pln); + assignin('base','resultGUI',resultGUI); + % check IPOPT status and return message for GUI user + CheckOptimizerStatus(usedOptimizer,'DAO'); + end + + if strcmp(pln.radiationMode,'photons') && (pln.propOpt.runSequencing || pln.propOpt.runDAO) + matRad_visApertureInfo(resultGUI.apertureInfo); + end + +catch ME + handles = showError(handles,'OptimizeCallback: Could not perform direct aperture optimization',ME); + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + guidata(hObject,handles); + return; +end + +% change state from busy to normal +set(Figures, 'pointer', 'arrow'); +set(InterfaceObj,'Enable','on'); +handles.dispWindow{3,1} = []; % reset dose ranges +handles.dispWindow{3,2} = []; % reset min max dose values +handles.rememberCurrAxes = false; +handles.IsoDose.Levels = 0; % ensure to use default iso dose line spacing +handles.cBarChanged = true; + +guidata(hObject,handles); +handles = updateIsoDoseLineCache(handles); +UpdateState(handles); +UpdatePlot(handles); +handles.rememberCurrAxes = true; +guidata(hObject,handles); + + +% the function CheckValidityPln checks if the provided plan is valid so +% that it can be used further on for optimization +function FlagValid = CheckValidityPln(cst) + +FlagValid = true; +%check if mean constraint is always used in combination +for i = 1:size(cst,1) + if ~isempty(cst{i,6}) + if ~isempty(strfind([cst{i,6}.type],'mean')) && isempty(strfind([cst{i,6}.type],'square')) + FlagValid = false; + warndlg('mean constraint needs to be defined in addition to a second constraint (e.g. squared deviation)'); + break + end + end +end + + +% --- Executes on selection change in popupTypeOfPlot +function popupTypeOfPlot_Callback(hObject, ~, handles) + + % intensity plot +if get(hObject,'Value') == 1 + + set(handles.sliderBeamSelection,'Enable','off') + set(handles.sliderOffset,'Enable','off') + set(handles.popupDisplayOption,'Enable','on') + set(handles.btnProfileType,'Enable','off'); + set(handles.popupPlane,'Enable','on'); + set(handles.radiobtnCT,'Enable','on'); + set(handles.radiobtnContour,'Enable','on'); + set(handles.radiobtnDose,'Enable','on'); + set(handles.radiobtnIsoDoseLines,'Enable','on'); + set(handles.radiobtnIsoDoseLinesLabels,'Enable','on'); + set(handles.sliderSlice,'Enable','on'); + +% profile plot +elseif get(hObject,'Value') == 2 + + if handles.State > 0 + if length(parseStringAsNum(get(handles.editGantryAngle,'String'),true)) > 1 + + set(handles.sliderBeamSelection,'Enable','on'); + handles.selectedBeam = 1; + pln = evalin('base','pln'); + set(handles.sliderBeamSelection,'Min',handles.selectedBeam,'Max',pln.propStf.numOfBeams,... + 'Value',handles.selectedBeam,... + 'SliderStep',[1/(pln.propStf.numOfBeams-1) 1/(pln.propStf.numOfBeams-1)],... + 'Enable','on'); + + else + handles.selectedBeam = 1; + end + + handles.profileOffset = get(handles.sliderOffset,'Value'); + + vMinMax = [-100 100]; + vRange = sum(abs(vMinMax)); + + ct = evalin('base','ct'); + if strcmp(get(handles.btnProfileType,'String'),'lateral') + SliderStep = vRange/ct.resolution.x; + else + SliderStep = vRange/ct.resolution.y; + end + + set(handles.sliderOffset,'Min',vMinMax(1),'Max',vMinMax(2),... + 'Value',handles.profileOffset,... + 'SliderStep',[1/SliderStep 1/SliderStep],... + 'Enable','on'); + end + + + set(handles.popupDisplayOption,'Enable','on'); + set(handles.btnProfileType,'Enable','on'); + set(handles.popupPlane,'Enable','off'); + set(handles.radiobtnCT,'Enable','off'); + set(handles.radiobtnContour,'Enable','off'); + set(handles.radiobtnDose,'Enable','off'); + set(handles.radiobtnIsoDoseLines,'Enable','off'); + set(handles.sliderSlice,'Enable','off'); + set(handles.radiobtnIsoDoseLinesLabels,'Enable','off'); + + + set(handles.btnProfileType,'Enable','on') + + if strcmp(get(handles.btnProfileType,'String'),'lateral') + handles.ProfileType = 'longitudinal'; + else + handles.ProfileType = 'lateral'; + end + +end + +handles.cBarChanged = true; + +handles.rememberCurrAxes = false; +cla(handles.axesFig,'reset'); +UpdatePlot(handles); +handles.rememberCurrAxes = true; +guidata(hObject, handles); + +% --- Executes on selection change in popupDisplayOption. +function popupDisplayOption_Callback(hObject, ~, handles) +content = get(hObject,'String'); +handles.SelectedDisplayOption = content{get(hObject,'Value'),1}; +handles.SelectedDisplayOptionIdx = get(hObject,'Value'); +%handles.dispWindow{3,1} = []; handles.dispWindow{3,2} = []; + +if ~isfield(handles,'colormapLocked') || ~handles.colormapLocked + handles.dispWindow{3,1} = []; handles.dispWindow{3,2} = []; +end + +handles = updateIsoDoseLineCache(handles); +handles.cBarChanged = true; +guidata(hObject, handles); +UpdatePlot(handles); +guidata(hObject, handles); + +% --- Executes on slider movement. +function sliderBeamSelection_Callback(hObject, ~, handles) +% hObject handle to sliderBeamSelection (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'Value') returns position of slider +% get(hObject,'Min') and get(hObject,'Max') to determine range of slider + + +handles.selectedBeam = round(get(hObject,'Value')); +set(hObject, 'Value', handles.selectedBeam); +handles.rememberCurrAxes = false; +UpdatePlot(handles); +handles.rememberCurrAxes = true; +guidata(hObject,handles); + +% --- Executes on button press in btnProfileType. +function btnProfileType_Callback(hObject, ~, handles) +% hObject handle to btnProfileType (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +if strcmp(get(hObject,'Enable') ,'on') + if strcmp(handles.ProfileType,'lateral') + handles.ProfileType = 'longitudinal'; + set(hObject,'String','lateral'); + else + handles.ProfileType = 'lateral'; + set(hObject,'String','longitudinal'); + end + + handles.rememberCurrAxes = false; + UpdatePlot(handles); + handles.rememberCurrAxes = true; + + guidata(hObject, handles); + +end + + + +function Flag = getCstTable (handles) + +data = get(handles.uiTable,'Data'); +OldCst = evalin('base','cst'); +NewCst=[]; +Cnt=1; +FlagValidParameters = true; + +%% generate new cst from GUI +for i = 1:size(OldCst,1) + CntObjF = 1; + FlagFound = false; + for j = 1:size(data,1) + + if strcmp(OldCst{i,2},data{j,1}) + FlagFound = true; + + if CntObjF == 1 + %VOI + if isempty(data{j,1}) || ~isempty(strfind(data{j,1}, 'Select')) + FlagValidParameters=false; + else + NewCst{Cnt,1}=data{j,1}; + end + %VOI Type + if isempty(data{j,2})|| ~isempty(strfind(data{j,2}, 'Select')) + FlagValidParameters=false; + else + NewCst{Cnt,2}=data{j,2}; + end + %Priority + if isempty(data{j,3}) + FlagValidParameters=false; + else + NewCst{Cnt,3}=data{j,3}; + end + end + + % Obj Func / constraint + if isempty(data{j,4}) ||~isempty(strfind(data{j,4}, 'Select')) + FlagValidParameters=false; + else + NewCst{Cnt,4}(CntObjF,1).type = data{j,4}; + end + + % get further parameter + if FlagValidParameters + + NewCst{Cnt,4}(CntObjF,1).dose = data{j,6}; + NewCst{Cnt,4}(CntObjF,1).penalty = data{j,5}; + NewCst{Cnt,4}(CntObjF,1).EUD = data{j,7}; + NewCst{Cnt,4}(CntObjF,1).volume = data{j,8}; + NewCst{Cnt,4}(CntObjF,1).robustness = data{j,9}; + + end + + CntObjF = CntObjF+1; + + end + + end + + if FlagFound == true + Cnt = Cnt +1; + end + +end + +if FlagValidParameters + + for m=1:size(OldCst,1) + VOIexist = OldCst(m,2); + boolChanged = false; + + for n = 1:size(NewCst,1) + + VOIGUI = NewCst(n,1); + + if strcmp(VOIexist,VOIGUI) + % overite existing objectives + boolChanged = true; + OldCst(m,6) = NewCst(n,4); + OldCst(m,3) = NewCst(n,2); + OldCst{m,5}.Priority = NewCst{n,3}; + break; + end + end + + if ~boolChanged + OldCst{m,6}=[]; + end + + end + assignin('base','cst',OldCst); + Flag = true; + +else + warndlg('not all values are set - cannot start dose calculation'); + Flag = false; +end + + +% --- Executes on button press in btnuiTableAdd. +function btnuiTableAdd_Callback(hObject, ~, handles) +% hObject handle to btnuiTableAdd (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +data = get(handles.uiTable, 'data'); +sEnd = size(data,1); +data{sEnd+1,1} = 'Select VOI'; +data{sEnd+1,2} = 'Select VOI Type'; +data{sEnd+1,4} = 'Select obj func/constraint'; +data{sEnd+1,9} = 'none'; + +set(handles.uiTable,'data',data); + +%handles.State=1; +guidata(hObject,handles); +UpdateState(handles); + + +% --- Executes on button press in btnuiTableDel. +function btnuiTableDel_Callback(hObject, eventdata, handles) +% hObject handle to btnuiTableDel (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +data = get(handles.uiTable, 'data'); +Index = get(handles.uiTable,'UserData'); +mask = (1:size(data,1))'; +mask(Index(:,1))=[]; +cst = evalin('base','cst'); +% if all rows have been deleted or a target voi was removed +if size(data,1)==1 || strcmp(data(Index(1),2),'TARGET') + handles.State=1; +end + +try + Idx = find(strcmp(cst(:,2),data(Index(1),1))); + % if OAR was removed then show a warning + if strcmp(data(Index(1),2),'OAR') && length(cst{Idx,6})<=1 + handles.DijCalcWarning =true; + end +catch +end +data=data(mask,:); +set(handles.uiTable,'data',data); +guidata(hObject,handles); +UpdateState(handles); +btnTableSave_Callback(hObject, eventdata, handles); + +% --- Executes when selected cell(s) is changed in uiTable. +function uiTable_CellSelectionCallback(hObject, eventdata, ~) +% hObject handle to uiTable (see GCBO) +% eventdata structure with the following fields (see MATLAB.UI.CONTROL.TABLE) +% Indices: row and column indices of the cell(s) currently selecteds +% handles structure with handles and user data (see GUIDATA) +index = eventdata.Indices; + if any(index) %loop necessary to surpress unimportant errors. + set(hObject,'UserData',index); + end + + +% --- Executes when entered data in editable cell(s) in uiTable. +function uiTable_CellEditCallback(hObject, eventdata, handles) +% hObject handle to uiTable (see GCBO) +% eventdata structure with the following fields (see MATLAB.UI.CONTROL.TABLE) +% Indices: row and column indices of the cell(s) edited +% PreviousData: previous data for the cell(s) edited +% EditData: string(s) entered by the user +% NewData: EditData or its converted form set on the Data property. Empty if Data was not changed +% Error: error string when failed to convert EditData to appropriate value for Data +% handles structure with handles and user data (see GUIDATA) + +Placeholder = NaN; +PlaceholderRob = 'none'; + +% get table data and current index of cell +if isempty(eventdata) + data = get(handles.uiTable,'Data'); + Index = get(handles.uiTable,'UserData'); + + if ~isempty(Index) && size(Index,1)==1 + % if this callback was invoked by calculate dij button, eventdata is empty + % and needs to be set manually + try + % if row gots deleted then index is pointing to non existing + % data + if size(data,1) check if objective function still makes sense +if eventdata.Indices(2) == 2 + + if strcmp(eventdata.NewData,'OAR') + + if sum(strcmp({'square deviation','square underdosing'},data{eventdata.Indices(1),4}))>0 + data{eventdata.Indices(1),4} = 'square overdosing'; + end + + else + + if sum(strcmp({'EUD','mean'},data{eventdata.Indices(1),4}))>0 + data{eventdata.Indices(1),4} = 'square deviation'; + end + + end +end +%% if objective function was changed -> check if VOI Type still makes sense +if eventdata.Indices(2) == 4 + ObjFunction = eventdata.NewData; +else + ObjFunction = data{eventdata.Indices(1),4}; +end + + +if eventdata.Indices(2) == 4 + if sum(strcmp(eventdata.NewData,{'square deviation','square underdosing','min dose constraint',... + 'min mean dose constraint','min DVH constraint','min DVH objective'})) > 0 + + if strcmp('OAR',data{eventdata.Indices(1),2}) + data{eventdata.Indices(1),4} = 'square overdosing'; + ObjFunction = 'square overdosing'; + if isnan(data{eventdata.Indices(1),5}) + data{eventdata.Indices(1),5} = 1; + end + end + + tmpDose = parseStringAsNum(data{eventdata.Indices(1),6},true); + if numel(tmpDose) == 2 + data{eventdata.Indices(1),6} = num2str(tmpDose(1)); + end + + elseif strcmp(eventdata.NewData,'mean') + + if strcmp('TARGET',data{eventdata.Indices(1),2}) + data{eventdata.Indices(1),4} = 'square deviation'; + end + + end +end + +%% set fields to NaN according to objective function + +if sum(strcmp(ObjFunction, {'square underdosing','square overdosing','square deviation'})) > 0 + + for k = [5 6] + if isnan(data{eventdata.Indices(1),k}) + data{eventdata.Indices(1),k} = 1; + end + end + data{eventdata.Indices(1),7} = Placeholder; + data{eventdata.Indices(1),8} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif strcmp(ObjFunction,'mean') + + if isnan(data{eventdata.Indices(1),5}) + data{eventdata.Indices(1),5} = 1; + end + data{eventdata.Indices(1),6} = Placeholder; + data{eventdata.Indices(1),7} = Placeholder; + data{eventdata.Indices(1),8} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif strcmp(ObjFunction,'EUD') + + for k = [5 7] + if isnan(data{eventdata.Indices(1),k}) + data{eventdata.Indices(1),k} = 1; + end + end + data{eventdata.Indices(1),6} = Placeholder; + data{eventdata.Indices(1),8} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif sum(strcmp(ObjFunction,{'min dose constraint','max dose constraint'... + 'min mean dose constraint','max mean dose constraint'}))> 0 + + if isnan(data{eventdata.Indices(1),6}) + data{eventdata.Indices(1),6} = 1; + end + data{eventdata.Indices(1),5} = Placeholder; + data{eventdata.Indices(1),7} = Placeholder; + data{eventdata.Indices(1),8} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif sum(strcmp(ObjFunction,{'min EUD constraint','max EUD constraint'}) ) > 0 + + if isnan(data{eventdata.Indices(1),7}) + data{eventdata.Indices(1),7} = 1; + end + data{eventdata.Indices(1),5} = Placeholder; + data{eventdata.Indices(1),6} = Placeholder; + data{eventdata.Indices(1),8} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif sum(strcmp(ObjFunction,{'min DVH constraint','max DVH constraint'}) ) > 0 + + for k = [6 8] + if isnan(data{eventdata.Indices(1),k}) + data{eventdata.Indices(1),k} = 1; + end + end + data{eventdata.Indices(1),5} = Placeholder; + data{eventdata.Indices(1),7} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +elseif sum(strcmp(ObjFunction,{'min DVH objective','max DVH objective'}) ) > 0 + + for k = [5 6 8] + if isnan(data{eventdata.Indices(1),k}) + data{eventdata.Indices(1),k} = 1; + end + end + data{eventdata.Indices(1),7} = Placeholder; + data{eventdata.Indices(1),9} = PlaceholderRob; + +end + +%% check if input is a valid +%check if overlap, penalty and and parameters are numbers +if (eventdata.Indices(2) == 3 || eventdata.Indices(2) == 5 || eventdata.Indices(2) == 6 || eventdata.Indices(2) == 7 || eventdata.Indices(2) == 8) ... + && ~isempty(eventdata.NewData) + if CheckValidity(eventdata.NewData) == false + data{eventdata.Indices(1),eventdata.Indices(2)} = eventdata.PreviousData; + end +end + + +%% if VOI was changed then change VOI type and overlap according to new VOI +if eventdata.Indices(2) == 1 && eventdata.Indices(1) == size(data,1) + for i = 1:size(data,1) + if strcmp(eventdata.NewData,data{i,1}) + data{eventdata.Indices(1),2}=data{i,2}; + data{eventdata.Indices(1),3}=data{i,3}; + end + end + +end + +%% set VOI type and priority according to existing definitions +for i=1:size(data,1) + if i~=eventdata.Indices(1) && strcmp(data(i,1),data(eventdata.Indices(1))) + data{i,2} = data{eventdata.Indices(1),2}; + data{i,3} = data{eventdata.Indices(1),3}; + end +end + + +if isnan(eventdata.NewData) + data{eventdata.Indices(1),eventdata.Indices(2)} = eventdata.PreviousData; +end + + +set(handles.txtInfo,'String','plan changed'); +set(handles.uiTable,'data',data); +guidata(hObject, handles); +UpdateState(handles); + +% enables/ disables buttons according to the current state +function UpdateState(handles) + +if handles.State > 0 + pln = evalin('base','pln'); + + if strcmp(pln.radiationMode,'carbon') + set(handles.popMenuBioOpt,'Enable','on'); + set(handles.btnSetTissue,'Enable','on'); + elseif strcmp(pln.radiationMode,'protons') + set(handles.popMenuBioOpt,'Enable','on'); + set(handles.btnSetTissue,'Enable','off'); + else + set(handles.popMenuBioOpt,'Enable','off'); + set(handles.btnSetTissue,'Enable','off'); + end + + cMapControls = allchild(handles.uipanel_colormapOptions); + for runHandles = cMapControls + set(runHandles,'Enable','on'); + end +end + +if handles.cubeHUavailable + cMapOptionsSelectList = {'None','CT (HU)','Result (i.e. dose)'}; + set(handles.popupmenu_windowPreset,'Visible','on'); + set(handles.text_windowPreset,'String','Window Preset'); +else + cMapOptionsSelectList = {'None','CT (ED)','Result (i.e. dose)'}; + set(handles.popupmenu_windowPreset,'Visible','off'); + set(handles.text_windowPreset,'String','No available Window Presets'); +end +handles.cBarChanged = true; + + switch handles.State + + case 0 + + set(handles.txtInfo,'String','no data loaded'); + set(handles.btnCalcDose,'Enable','off'); + set(handles.btnOptimize ,'Enable','off'); + set(handles.pushbutton_recalc,'Enable','off'); + set(handles.btnSaveToGUI,'Enable','off'); + set(handles.btnDVH,'Enable','off'); + set(handles.importDoseButton,'Enable','off'); + set(handles.btn_export,'Enable','off'); + set(handles.btn3Dview,'Enable','off'); + + cMapControls = allchild(handles.uipanel_colormapOptions); + for runHandles = cMapControls + set(runHandles,'Enable','off'); + end + + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList{1}) + set(handles.popupmenu_chooseColorData,'Value',1); + + case 1 + + set(handles.txtInfo,'String','ready for dose calculation'); + set(handles.btnCalcDose,'Enable','on'); + set(handles.btnOptimize ,'Enable','off'); + set(handles.pushbutton_recalc,'Enable','off'); + set(handles.btnSaveToGUI,'Enable','off'); + set(handles.btnDVH,'Enable','off'); + set(handles.importDoseButton,'Enable','off'); + set(handles.btn_export,'Enable','on'); + set(handles.btn3Dview,'Enable','on'); + + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:2)) + set(handles.popupmenu_chooseColorData,'Value',2); + AllVarNames = evalin('base','who'); + if ~isempty(AllVarNames) + if ismember('resultGUI',AllVarNames) + set(handles.pushbutton_recalc,'Enable','on'); + set(handles.btnSaveToGUI,'Enable','on'); + set(handles.btnDVH,'Enable','on'); + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) + set(handles.popupmenu_chooseColorData,'Value',3); + end + end + + case 2 + + set(handles.txtInfo,'String','ready for optimization'); + set(handles.btnCalcDose,'Enable','on'); + set(handles.btnOptimize ,'Enable','on'); + set(handles.pushbutton_recalc,'Enable','off'); + set(handles.btnSaveToGUI,'Enable','off'); + set(handles.btnDVH,'Enable','off'); + set(handles.importDoseButton,'Enable','off'); + set(handles.btn_export,'Enable','on'); + set(handles.btn3Dview,'Enable','on'); + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:2)) + set(handles.popupmenu_chooseColorData,'Value',2); + AllVarNames = evalin('base','who'); + + if ~isempty(AllVarNames) + if ismember('resultGUI',AllVarNames) + set(handles.pushbutton_recalc,'Enable','on'); + set(handles.btnSaveToGUI,'Enable','on'); + set(handles.btnDVH,'Enable','on'); + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) + set(handles.popupmenu_chooseColorData,'Value',3); + end + end + + case 3 + set(handles.txtInfo,'String','plan is optimized'); + set(handles.btnCalcDose,'Enable','on'); + set(handles.btnOptimize ,'Enable','on'); + set(handles.pushbutton_recalc,'Enable','on'); + set(handles.btnSaveToGUI,'Enable','on'); + set(handles.btnDVH,'Enable','on'); + set(handles.btn_export,'Enable','on'); + set(handles.btn3Dview,'Enable','on'); + % resultGUI struct needs to be available to import dose + % otherwise inconsistent states can be achieved + set(handles.importDoseButton,'Enable','on'); + set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) + set(handles.popupmenu_chooseColorData,'Value',3); + end + +guidata(handles.figure1,handles); + +% fill GUI elements with plan information +function setPln(handles) +pln = evalin('base','pln'); +% sanity check of isoCenter +if size(pln.propStf.isoCenter,1) ~= pln.propStf.numOfBeams && size(pln.propStf.isoCenter,1) == 1 + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * pln.propStf.isoCenter(1,:); +elseif size(pln.propStf.isoCenter,1) ~= pln.propStf.numOfBeams && size(pln.propStf.isoCenter,1) ~= 1 + error('Isocenter in plan file are incosistent.'); +end +set(handles.editBixelWidth,'String',num2str(pln.propStf.bixelWidth)); +set(handles.editFraction,'String',num2str(pln.numOfFractions)); + +if isfield(pln.propStf,'isoCenter') + if size(unique(pln.propStf.isoCenter,'rows'),1) == 1 + set(handles.editIsoCenter,'String',regexprep(num2str((round(pln.propStf.isoCenter(1,:)*10))./10), '\s+', ' ')); + set(handles.editIsoCenter,'Enable','on'); + set(handles.checkIsoCenter,'Enable','on'); + else + set(handles.editIsoCenter,'String','multiple isoCenter'); + set(handles.editIsoCenter,'Enable','off'); + set(handles.checkIsoCenter,'Value',0); + set(handles.checkIsoCenter,'Enable','off'); + end +end +set(handles.editGantryAngle,'String',num2str((pln.propStf.gantryAngles))); +set(handles.editCouchAngle,'String',num2str((pln.propStf.couchAngles))); +set(handles.popupRadMode,'Value',find(strcmp(get(handles.popupRadMode,'String'),pln.radiationMode))); +set(handles.popUpMachine,'Value',find(strcmp(get(handles.popUpMachine,'String'),pln.machine))); + +if ~strcmp(pln.propOpt.bioOptimization,'none') + set(handles.popMenuBioOpt,'Enable','on'); + contentPopUp = get(handles.popMenuBioOpt,'String'); + ix = find(strcmp(pln.propOpt.bioOptimization,contentPopUp)); + set(handles.popMenuBioOpt,'Value',ix); + set(handles.btnSetTissue,'Enable','on'); +else + set(handles.popMenuBioOpt,'Enable','off'); + set(handles.btnSetTissue,'Enable','off'); +end +%% enable sequencing and DAO button if radiation mode is set to photons +if strcmp(pln.radiationMode,'photons') && pln.propOpt.runSequencing + set(handles.btnRunSequencing,'Enable','on'); + set(handles.btnRunSequencing,'Value',1); +elseif strcmp(pln.radiationMode,'photons') && ~pln.propOpt.runSequencing + set(handles.btnRunSequencing,'Enable','on'); + set(handles.btnRunSequencing,'Value',0); +else + set(handles.btnRunSequencing,'Enable','off'); +end +%% enable DAO button if radiation mode is set to photons +if strcmp(pln.radiationMode,'photons') && pln.propOpt.runDAO + set(handles.btnRunDAO,'Enable','on'); + set(handles.btnRunDAO,'Value',1); +elseif strcmp(pln.radiationMode,'photons') && ~pln.propOpt.runDAO + set(handles.btnRunDAO,'Enable','on'); + set(handles.btnRunDAO,'Value',0); +else + set(handles.btnRunDAO,'Enable','off'); +end +%% enable stratification level input if radiation mode is set to photons +if strcmp(pln.radiationMode,'photons') + set(handles.txtSequencing,'Enable','on'); + set(handles.radiobutton3Dconf,'Enable','on'); + set(handles.editSequencingLevel,'Enable','on'); +else + set(handles.txtSequencing,'Enable','off'); + set(handles.radiobutton3Dconf,'Enable','off'); + set(handles.editSequencingLevel,'Enable','off'); +end + +% --- Executes on button press in btnTableSave. +function btnTableSave_Callback(~, ~, handles) +% hObject handle to btnTableSave (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +%getCstTable(handles); +if get(handles.checkIsoCenter,'Value') + pln = evalin('base','pln'); + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); + set(handles.editIsoCenter,'String',regexprep(num2str((round(pln.propStf.isoCenter(1,:) * 10))./10), '\s+', ' ')); + assignin('base','pln',pln); +end +getPlnFromGUI(handles); + +% --- Executes on selection change in listBoxCmd. +function listBoxCmd_Callback(hObject, ~, ~) +numLines = size(get(hObject,'String'),1); +set(hObject, 'ListboxTop', numLines); + +% --- Executes on slider movement. +function sliderOffset_Callback(hObject, ~, handles) +handles.profileOffset = get(hObject,'Value'); +UpdatePlot(handles); + + +%% HELPER FUNCTIONS +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +% check validity of input for cst +function flagValidity = CheckValidity(Val) + +flagValidity = true; + +if ischar(Val) + Val = str2num(Val); +end + +if length(Val) > 2 + warndlg('invalid input!'); +end + +if isempty(Val) + warndlg('Input not a number!'); + flagValidity = false; +end + +if any(Val < 0) + warndlg('Input not a positive number!'); + flagValidity = false; +end + +% return IPOPT status as message box +function CheckOptimizerStatus(usedOptimizer,OptCase) + +[statusmsg,statusflag] = usedOptimizer.GetStatus(); + +if statusflag == 0 || statusflag == 1 + status = 'none'; +else + status = 'warn'; +end + +msgbox(['Optimizer finished with status ' num2str(statusflag) ' (' statusmsg ')'],'Optimizer',status,'modal'); + +% get pln file form GUI +function getPlnFromGUI(handles) + +% evalin pln (if existant) in order to decide whether isoCenter should be calculated +% automatically +if evalin('base','exist(''pln'',''var'')') + pln = evalin('base','pln'); +end + +pln.propStf.bixelWidth = parseStringAsNum(get(handles.editBixelWidth,'String'),false); % [mm] / also corresponds to lateral spot spacing for particles +pln.propStf.gantryAngles = parseStringAsNum(get(handles.editGantryAngle,'String'),true); % [???] +pln.propStf.couchAngles = parseStringAsNum(get(handles.editCouchAngle,'String'),true); % [???] +pln.propStf.numOfBeams = numel(pln.propStf.gantryAngles); +try + ct = evalin('base','ct'); + pln.numOfVoxels = prod(ct.cubeDim); + pln.voxelDimensions = ct.cubeDim; +catch +end +pln.numOfFractions = parseStringAsNum(get(handles.editFraction,'String'),false); +contents = get(handles.popupRadMode,'String'); +pln.radiationMode = contents{get(handles.popupRadMode,'Value')}; % either photons / protons / carbon +contents = get(handles.popUpMachine,'String'); +pln.machine = contents{get(handles.popUpMachine,'Value')}; + +if (~strcmp(pln.radiationMode,'photons')) + contentBioOpt = get(handles.popMenuBioOpt,'String'); + pln.propOpt.bioOptimization = contentBioOpt{get(handles.popMenuBioOpt,'Value'),:}; +else + pln.propOpt.bioOptimization = 'none'; +end + +pln.propOpt.runSequencing = logical(get(handles.btnRunSequencing,'Value')); +pln.propOpt.runDAO = logical(get(handles.btnRunDAO,'Value')); + +try + cst = evalin('base','cst'); + if (sum(strcmp('TARGET',cst(:,3))) > 0 && get(handles.checkIsoCenter,'Value')) || ... + (sum(strcmp('TARGET',cst(:,3))) > 0 && ~isfield(pln.propStf,'isoCenter')) + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(cst,ct); + set(handles.checkIsoCenter,'Value',1); + else + if ~strcmp(get(handles.editIsoCenter,'String'),'multiple isoCenter') + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * str2num(get(handles.editIsoCenter,'String')); + end + end +catch + warning('couldnt set isocenter in getPln function') +end + +handles.pln = pln; +assignin('base','pln',pln); + +% parsing a string as number array +function number = parseStringAsNum(stringIn,isVector) +if isnumeric(stringIn) + number = stringIn; +else + number = str2num(stringIn); + if isempty(number) || length(number) > 1 && ~isVector + warndlg(['could not parse all parameters (pln, optimization parameter)']); + number = NaN; + elseif isVector && iscolumn(number) + number = number'; + end +end + + +% show error +function handles = showError(handles,Message,ME) + +if nargin == 3 + %Add exception message + if isfield(handles,'devMode') && handles.devMode + meType = 'extended'; + else + meType = 'basic'; + end + Message = {Message,ME.getReport(meType,'hyperlinks','off')}; +end + +if isfield(handles,'ErrorDlg') + if ishandle(handles.ErrorDlg) + close(handles.ErrorDlg); + end +end +handles.ErrorDlg = errordlg(Message); + +% show warning +function handles = showWarning(handles,Message,ME) + +if nargin == 3 + %Add exception message + if isfield(handles,'devMode') && handles.devMode + meType = 'extended'; + else + meType = 'basic'; + end + Message = {Message,ME.getReport(meType,'hyperlinks','off')}; +end + +if isfield(handles,'WarnDlg') + if ishandle(handles.WarnDlg) + close(handles.WarnDlg); + end +end +handles.WarnDlg = warndlg(Message); + +% check for valid machine data input file +function flag = checkRadiationComposition(handles) +flag = true; +contents = cellstr(get(handles.popUpMachine,'String')); +Machine = contents{get(handles.popUpMachine,'Value')}; +contents = cellstr(get(handles.popupRadMode,'String')); +radMod = contents{get(handles.popupRadMode,'Value')}; + +if isdeployed + FoundFile = dir([ctfroot filesep 'matRad' filesep radMod '_' Machine '.mat']); +else + FoundFile = dir([fileparts(mfilename('fullpath')) filesep radMod '_' Machine '.mat']); +end +if isempty(FoundFile) + warndlg(['No base data available for machine: ' Machine]); + flag = false; +end + +function matRadScrollWheelFcn(src,event) + +% get handles +handles = guidata(src); + +% compute new slice +currSlice = round(get(handles.sliderSlice,'Value')); +newSlice = currSlice - event.VerticalScrollCount; + +% project to allowed set +newSlice = min(newSlice,get(handles.sliderSlice,'Max')); +newSlice = max(newSlice,get(handles.sliderSlice,'Min')); + +% update slider +set(handles.sliderSlice,'Value',newSlice); + +% update handles object +guidata(src,handles); + +% update plot +UpdatePlot(handles); + + + + +%% CALLBACKS +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +% button: show DVH +function btnDVH_Callback(~, ~, handles) + +resultGUI = evalin('base','resultGUI'); +Content = get(handles.popupDisplayOption,'String'); +SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; + +pln = evalin('base','pln'); +resultGUI_SelectedCube.physicalDose = resultGUI.(SelectedCube); + +if ~strcmp(pln.propOpt.bioOptimization,'none') + + %check if one of the default fields is selected + if sum(strcmp(SelectedCube,{'physicalDose','effect','RBE,','RBExDose','alpha','beta'})) > 0 + resultGUI_SelectedCube.physicalDose = resultGUI.physicalDose; + resultGUI_SelectedCube.RBExDose = resultGUI.RBExDose; + else + Idx = find(SelectedCube == '_'); + SelectedSuffix = SelectedCube(Idx(1):end); + resultGUI_SelectedCube.physicalDose = resultGUI.(['physicalDose' SelectedSuffix]); + resultGUI_SelectedCube.RBExDose = resultGUI.(['RBExDose' SelectedSuffix]); + end +end + +%adapt visibilty +cst = evalin('base','cst'); +for i = 1:size(cst,1) + cst{i,5}.Visible = handles.VOIPlotFlag(i); +end + +matRad_indicatorWrapper(cst,pln,resultGUI_SelectedCube); + +assignin('base','cst',cst); + +% radio button: plot isolines labels +function radiobtnIsoDoseLinesLabels_Callback(~, ~, handles) +UpdatePlot(handles); + +% button: refresh +function btnRefresh_Callback(hObject, ~, handles) + +handles = resetGUI(hObject, handles); + +%% parse variables from base workspace +AllVarNames = evalin('base','who'); +handles.AllVarNames = AllVarNames; +try + if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + ct = evalin('base','ct'); + cst = evalin('base','cst'); + %cst = setCstTable(handles,cst); + generateCstTable(handles,cst); + handles.State = 1; + cst = matRad_computeVoiContoursWrapper(cst,ct); + assignin('base','cst',cst); + elseif ismember('ct',AllVarNames) && ~ismember('cst',AllVarNames) + handles = showError(handles,'GUI OpeningFunc: could not find cst file'); + elseif ~ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + handles = showError(handles,'GUI OpeningFunc: could not find ct file'); + end +catch + handles = showError(handles,'GUI OpeningFunc: Could not load ct and cst file'); +end + +if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) + handles = reloadGUI(hObject, handles, ct, cst); +else + handles = reloadGUI(hObject, handles); +end +guidata(hObject, handles); + + +% text box: # fractions +function editFraction_Callback(hObject, ~, handles) +getPlnFromGUI(handles); +guidata(hObject,handles); + +% text box: stratification levels +function editSequencingLevel_Callback(~, ~, ~) + +% text box: isoCenter in [mm] +function editIsoCenter_Callback(hObject, ~, handles) + +pln = evalin('base','pln'); +tmpIsoCenter = str2num(get(hObject,'String')); + +if length(tmpIsoCenter) == 3 + if sum(any(unique(pln.propStf.isoCenter,'rows')~=tmpIsoCenter)) + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*tmpIsoCenter; + handles.State = 1; + UpdateState(handles); + end +else + handles = showError(handles,'EditIsoCenterCallback: Could not set iso center'); +end + +assignin('base','pln',pln); +guidata(hObject,handles); + +% check box: iso center auto +function checkIsoCenter_Callback(hObject, ~, handles) + +W = evalin('base','whos'); +doesPlnExist = ismember('pln',{W(:).name}); + +if get(hObject,'Value') && doesPlnExist + pln = evalin('base','pln'); + if ~isfield(pln.propStf,'isoCenter') + pln.propStf.isoCenter = NaN; + end + tmpIsoCenter = matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); + if ~isequal(tmpIsoCenter,pln.propStf.isoCenter) + pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*tmpIsoCenter; + handles.State = 1; + UpdateState(handles); + end + set(handles.editIsoCenter,'String',regexprep(num2str((round(tmpIsoCenter*10))./10), '\s+', ' ')); + set(handles.editIsoCenter,'Enable','off') + assignin('base','pln',pln); +else + set(handles.editIsoCenter,'Enable','on') +end + +% radio button: run sequencing +function btnRunSequencing_Callback(~, ~, handles) +getPlnFromGUI(handles); + +% radio button: run direct aperture optimization +function btnRunDAO_Callback(~, ~, handles) +getPlnFromGUI(handles); + +% button: set iso dose levels +function btnSetIsoDoseLevels_Callback(hObject, ~, handles) +prompt = {['Enter iso dose levels in [Gy]. Enter space-separated numbers, e.g. 1.5 2 3 4.98. Enter 0 to use default values']}; +if isequal(handles.IsoDose.Levels,0) || ~isvector(handles.IsoDose.Levels) || any(~isnumeric(handles.IsoDose.Levels)) || any(isnan(handles.IsoDose.Levels)) + defaultLine = {'1 2 3 '}; +else + if isrow(handles.IsoDose.Levels) + defaultLine = cellstr(num2str(handles.IsoDose.Levels,'%.2g ')); + else + defaultLine = cellstr(num2str(handles.IsoDose.Levels','%.2g ')); + end +end + +try + Input = inputdlg(prompt,'Set iso dose levels ', [1 70],defaultLine); + if ~isempty(Input) + handles.IsoDose.Levels = (sort(str2num(Input{1}))); + if length(handles.IsoDose.Levels) == 1 && (handles.IsoDose.Levels(1) ~= 0) + handles.IsoDose.Levels = [handles.IsoDose.Levels handles.IsoDose.Levels]; + end + handles.IsoDose.NewIsoDoseFlag = true; + end +catch + warning('Couldnt parse iso dose levels - using default values'); + handles.IsoDose.Levels = 0; +end +handles = updateIsoDoseLineCache(handles); +handles.IsoDose.NewIsoDoseFlag = false; +UpdatePlot(handles); +guidata(hObject,handles); + + +% popup menu: machine +function popUpMachine_Callback(hObject, ~, handles) +contents = cellstr(get(hObject,'String')); +checkRadiationComposition(handles); +if handles.State > 0 + pln = evalin('base','pln'); + if handles.State > 0 && ~strcmp(contents(get(hObject,'Value')),pln.machine) + handles.State = 1; + UpdateState(handles); + guidata(hObject,handles); + end + getPlnFromGUI(handles); +end + +% toolbar load button +function toolbarLoad_ClickedCallback(hObject, eventdata, handles) +btnLoadMat_Callback(hObject, eventdata, handles); + +% toolbar save button +function toolbarSave_ClickedCallback(hObject, eventdata, handles) + +btnTableSave_Callback(hObject, eventdata, handles); + +try + + if handles.State > 0 + ct = evalin('base','ct'); + cst = evalin('base','cst'); + pln = evalin('base','pln'); + end + + if handles.State > 1 + stf = evalin('base','stf'); + dij = evalin('base','dij'); + end + + if handles.State > 2 + resultGUI = evalin('base','resultGUI'); + end + + switch handles.State + case 1 + uisave({'cst','ct','pln'}); + case 2 + uisave({'cst','ct','pln','stf','dij'}); + case 3 + uisave({'cst','ct','pln','stf','dij','resultGUI'}); + end + +catch + handles = showWarning(handles,'Could not save files'); +end +guidata(hObject,handles); + +% button: about +function btnAbout_Callback(hObject, eventdata, handles) + +msgbox({'https://github.com/e0404/matRad/' 'email: matrad@dkfz.de'},'About'); + +% button: close +function figure1_CloseRequestFcn(hObject, ~, ~) +set(0,'DefaultUicontrolBackgroundColor',[0.5 0.5 0.5]); +selection = questdlg('Do you really want to close matRad?',... + 'Close matRad',... + 'Yes','No','Yes'); + +%BackgroundColor',[0.5 0.5 0.5] + switch selection + case 'Yes', + delete(hObject); + case 'No' + return + end + +% --- Executes on button press in pushbutton_recalc. +function pushbutton_recalc_Callback(hObject, ~, handles) + +% recalculation only makes sense if ... +if evalin('base','exist(''pln'',''var'')') && ... + evalin('base','exist(''stf'',''var'')') && ... + evalin('base','exist(''ct'',''var'')') && ... + evalin('base','exist(''cst'',''var'')') && ... + evalin('base','exist(''resultGUI'',''var'')') + +try + + % indicate that matRad is busy + % change mouse pointer to hour glass + Figures = gcf;%findobj('type','figure'); + set(Figures, 'pointer', 'watch'); + drawnow; + % disable all active objects + InterfaceObj = findobj(Figures,'Enable','on'); + set(InterfaceObj,'Enable','off'); + + % get all data from workspace + pln = evalin('base','pln'); + stf = evalin('base','stf'); + ct = evalin('base','ct'); + cst = evalin('base','cst'); + resultGUI = evalin('base','resultGUI'); + + % get weights of the selected cube + Content = get(handles.popupDisplayOption,'String'); + SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; + Suffix = strsplit(SelectedCube,'_'); + if length(Suffix)>1 + Suffix = ['_' Suffix{2}]; + else + Suffix = ''; + end + + if sum([stf.totalNumOfBixels]) ~= length(resultGUI.(['w' Suffix])) + warndlg('weight vector does not corresponding to current steering file'); + return + end + + % change isocenter if that was changed and do _not_ recreate steering + % information + for i = 1:numel(pln.propStf.gantryAngles) + stf(i).isoCenter = pln.propStf.isoCenter(i,:); + end + + % recalculate influence matrix + if strcmp(pln.radiationMode,'photons') + dij = matRad_calcPhotonDose(ct,stf,pln,cst); + elseif strcmp(pln.radiationMode,'protons') || strcmp(pln.radiationMode,'carbon') + dij = matRad_calcParticleDose(ct,stf,pln,cst); + end + + % recalculate cubes in resultGUI + resultGUIreCalc = matRad_calcCubes(resultGUI.(['w' Suffix]),dij,cst); + + % delete old variables to avoid confusion + if isfield(resultGUI,'effect') + resultGUI = rmfield(resultGUI,'effect'); + resultGUI = rmfield(resultGUI,'RBExDose'); + resultGUI = rmfield(resultGUI,'RBE'); + resultGUI = rmfield(resultGUI,'alpha'); + resultGUI = rmfield(resultGUI,'beta'); + end + + % overwrite the "standard" fields + sNames = fieldnames(resultGUIreCalc); + for j = 1:length(sNames) + resultGUI.(sNames{j}) = resultGUIreCalc.(sNames{j}); + end + + % assign results to base worksapce + assignin('base','dij',dij); + assignin('base','resultGUI',resultGUI); + + handles.State = 3; + + % show physicalDose of newly computed state + handles.SelectedDisplayOption = 'physicalDose'; + set(handles.popupDisplayOption,'Value',find(strcmp('physicalDose',Content))); + + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + + handles.cBarChanged = true; + + handles = updateIsoDoseLineCache(handles); + + UpdateState(handles); + + handles.rememberCurrAxes = false; + UpdatePlot(handles); + handles.rememberCurrAxes = true; + + guidata(hObject,handles); + +catch ME + handles = showError(handles,'CalcDoseCallback: Error in dose recalculation!',ME); + + % change state from busy to normal + set(Figures, 'pointer', 'arrow'); + set(InterfaceObj,'Enable','on'); + + guidata(hObject,handles); + return; + +end + +end + + +% --- Executes on button press in btnSetTissue. +function btnSetTissue_Callback(hObject, ~, handles) + +%check if patient is loaded +if handles.State == 0 + return +end + +%parse variables from base-workspace +cst = evalin('base','cst'); +pln = evalin('base','pln'); + +fileName = [pln.radiationMode '_' pln.machine]; +load(fileName); + +% check for available cell types characterized by alphaX and betaX +for i = 1:size(machine.data(1).alphaX,2) + CellType{i} = [num2str(machine.data(1).alphaX(i)) ' ' num2str(machine.data(1).betaX(i))]; +end + +%fill table data array +for i = 1:size(cst,1) + data{i,1} = cst{i,2}; + data{i,2} = [num2str(cst{i,5}.alphaX) ' ' num2str(cst{i,5}.betaX)]; + data{i,3} = (cst{i,5}.alphaX / cst{i,5}.betaX ); +end + +Width = 400; +Height = 200 + 20*size(data,1); +ScreenSize = get(0,'ScreenSize'); +% show "set tissue parameter" window +figHandles = get(0,'Children'); +if ~isempty(figHandles) + IdxHandle = strcmp(get(figHandles,'Name'),'Set Tissue Parameters'); +else + IdxHandle = []; +end + +%check if window is already exists +if any(IdxHandle) + IdxTable = find(strcmp({figHandles(IdxHandle).Children.Type},'uitable')); + set(figHandles(IdxHandle).Children(IdxTable), 'Data', []); + figTissue = figHandles(IdxHandle); + %set focus + figure(figTissue); +else + figTissue = figure('Name','Set Tissue Parameters','Color',[.5 .5 .5],'NumberTitle','off','Position',... + [ceil(ScreenSize(3)/2) ceil(ScreenSize(4)/2) Width Height]); +end + +% define the tissue parameter table +cNames = {'VOI','alphaX betaX','alpha beta ratio'}; +columnformat = {'char',CellType,'numeric'}; + +tissueTable = uitable('Parent', figTissue,'Data', data,'ColumnEditable',[false true false],... + 'ColumnName',cNames, 'ColumnFormat',columnformat,'Position',[50 150 10 10]); +set(tissueTable,'CellEditCallback',@tissueTable_CellEditCallback); +% set width and height +currTablePos = get(tissueTable,'Position'); +currTableExt = get(tissueTable,'Extent'); +currTablePos(3) = currTableExt(3); +currTablePos(4) = currTableExt(4); +set(tissueTable,'Position',currTablePos); + +% define two buttons with callbacks +uicontrol('Parent', figTissue,'Style', 'pushbutton', 'String', 'Save&Close',... + 'Position', [Width-(0.25*Width) 0.1 * Height 70 30],... + 'Callback', @(hpb,eventdata)SaveTissueParameters(hpb,eventdata,handles)); + +uicontrol('Parent', figTissue,'Style', 'pushbutton', 'String', 'Cancel&Close',... + 'Position', [Width-(0.5*Width) 0.1 * Height 80 30],... + 'Callback', 'close'); + +guidata(hObject,handles); +UpdateState(handles); + + +function SaveTissueParameters(~, ~, handles) +cst = evalin('base','cst'); +% get handle to uiTable +figHandles = get(0,'Children'); +IdxHandle = find(strcmp(get(figHandles,'Name'),'Set Tissue Parameters')); +% find table in window + +figHandleChildren = get(figHandles(IdxHandle),'Children'); +IdxTable = find(strcmp(get(figHandleChildren,'Type'),'uitable')); +uiTable = figHandleChildren(IdxTable); +% retrieve data from uitable +data = get(uiTable,'data'); + +for i = 1:size(cst,1) + for j = 1:size(data,1) + if strcmp(cst{i,2},data{j,1}) + alphaXBetaX = str2num(data{j,2}); + cst{i,5}.alphaX = alphaXBetaX(1); + cst{i,5}.betaX = alphaXBetaX(2); + end + end +end +assignin('base','cst',cst); +close +handles.State = 2; +UpdateState(handles); + + + +function tissueTable_CellEditCallback(hObject, eventdata, ~) +if eventdata.Indices(2) == 2 + alphaXBetaX = str2num(eventdata.NewData); + data = get(hObject,'Data'); + data{eventdata.Indices(1),3} = alphaXBetaX(1)/alphaXBetaX(2); + set(hObject,'Data',data); +end + +% --- Executes on button press in btnSaveToGUI. +function btnSaveToGUI_Callback(hObject, ~, handles) + +Width = 400; +Height = 200; +ScreenSize = get(0,'ScreenSize'); + +% show "Provide result name" window +figHandles = get(0,'Children'); +if ~isempty(figHandles) + IdxHandle = strcmp(get(figHandles,'Name'),'Provide result name'); +else + IdxHandle = []; +end + +%check if window is already exists +if any(IdxHandle) + figDialog = figHandles(IdxHandle); + %set focus + figure(figDialog); +else + figDialog = dialog('Position',[ceil(ScreenSize(3)/2) ceil(ScreenSize(4)/2) Width Height],'Name','Provide result name','Color',[0.5 0.5 0.5]); + + uicontrol('Parent',figDialog,... + 'Style','text',... + 'Position',[20 Height - (0.35*Height) 350 60],... + 'String','Please provide a decriptive name for your optimization result:','FontSize',10,'BackgroundColor',[0.5 0.5 0.5]); + + uicontrol('Parent',figDialog,... + 'Style','edit',... + 'Position',[30 60 350 60],... + 'String','Please enter name here...','FontSize',10,'BackgroundColor',[0.55 0.55 0.55]); + + uicontrol('Parent', figDialog,'Style', 'pushbutton', 'String', 'Save','FontSize',10,... + 'Position', [0.42*Width 0.1 * Height 70 30],... + 'Callback', @(hpb,eventdata)SaveResultToGUI(hpb,eventdata,guidata(hpb))); +end + +uiwait(figDialog); +guidata(hObject, handles); +UpdateState(handles) +UpdatePlot(handles) + + +function SaveResultToGUI(~, ~, ~) +AllFigHandles = get(0,'Children'); +ixHandle = strcmp(get(AllFigHandles,'Name'),'Provide result name'); +uiEdit = get(AllFigHandles(ixHandle),'Children'); + +if strcmp(get(uiEdit(2),'String'),'Please enter name here...') + + formatOut = 'mmddyyHHMM'; + Suffix = ['_' datestr(now,formatOut)]; +else + % delete special characters + Suffix = get(uiEdit(2),'String'); + logIx = isstrprop(Suffix,'alphanum'); + Suffix = ['_' Suffix(logIx)]; +end + +pln = evalin('base','pln'); +resultGUI = evalin('base','resultGUI'); + +if isfield(resultGUI,'physicalDose') + resultGUI.(['physicalDose' Suffix]) = resultGUI.physicalDose; +end +if isfield(resultGUI,'w') + resultGUI.(['w' Suffix]) = resultGUI.w; +end + + +if ~strcmp(pln.propOpt.bioOptimization,'none') + + if isfield(resultGUI,'RBExDose') + resultGUI.(['RBExDose' Suffix]) = resultGUI.RBExDose; + end + + if strcmp(pln.radiationMode,'carbon') == 1 + if isfield(resultGUI,'effect') + resultGUI.(['effect' Suffix])= resultGUI.effect; + end + + if isfield(resultGUI,'RBE') + resultGUI.(['RBE' Suffix]) = resultGUI.RBE; + end + if isfield(resultGUI,'alpha') + resultGUI.(['alpha' Suffix]) = resultGUI.alpha; + end + if isfield(resultGUI,'beta') + resultGUI.(['beta' Suffix]) = resultGUI.beta; + end + end +end + +close(AllFigHandles(ixHandle)); +assignin('base','resultGUI',resultGUI); + +% precompute contours of VOIs +function cst = precomputeContours(ct,cst) +mask = zeros(ct.cubeDim); % create zero cube with same dimeonsions like dose cube +for s = 1:size(cst,1) + cst{s,7} = cell(max(ct.cubeDim(:)),3); + mask(:) = 0; + mask(cst{s,4}{1}) = 1; + for slice = 1:ct.cubeDim(1) + if sum(sum(mask(slice,:,:))) > 0 + cst{s,7}{slice,1} = contourc(squeeze(mask(slice,:,:)),.5*[1 1]); + end + end + for slice = 1:ct.cubeDim(2) + if sum(sum(mask(:,slice,:))) > 0 + cst{s,7}{slice,2} = contourc(squeeze(mask(:,slice,:)),.5*[1 1]); + end + end + for slice = 1:ct.cubeDim(3) + if sum(sum(mask(:,:,slice))) > 0 + cst{s,7}{slice,3} = contourc(squeeze(mask(:,:,slice)),.5*[1 1]); + end + end +end + +%Update IsodoseLines +function handles = updateIsoDoseLineCache(handles) +resultGUI = evalin('base','resultGUI'); +% select first cube if selected option does not exist +if ~isfield(resultGUI,handles.SelectedDisplayOption) + CubeNames = fieldnames(resultGUI); + dose = resultGUI.(CubeNames{1,1}); +else + dose = resultGUI.(handles.SelectedDisplayOption); +end + +%if function is called for the first time then set display parameters +if isempty(handles.dispWindow{3,2}) + handles.dispWindow{3,1} = [min(dose(:)) max(dose(:))]; % set default dose range + handles.dispWindow{3,2} = [min(dose(:)) max(dose(:))]; % set min max values +end + +minMaxRange = handles.dispWindow{3,1}; +% if upper colorrange is defined then use it otherwise 120% iso dose + upperMargin = 1; +if abs((max(dose(:)) - handles.dispWindow{3,1}(1,2))) < 0.01 * max(dose(:)) + upperMargin = 1.2; +end + +if (length(handles.IsoDose.Levels) == 1 && handles.IsoDose.Levels(1,1) == 0) || ~handles.IsoDose.NewIsoDoseFlag + vLevels = [0.1:0.1:0.9 0.95:0.05:upperMargin]; + referenceDose = (minMaxRange(1,2))/(upperMargin); + handles.IsoDose.Levels = minMaxRange(1,1) + (referenceDose-minMaxRange(1,1)) * vLevels; +end +handles.IsoDose.Contours = matRad_computeIsoDoseContours(dose,handles.IsoDose.Levels); + + + +%% CREATE FUNCTIONS +%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +% popup menu: machine +function popUpMachine_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% text box: max value +function txtMaxVal_CreateFcn(hObject, ~, ~) + +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% text box: edit iso center +function editIsoCenter_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% text box: stratification levels +function editSequencingLevel_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function slicerPrecision_CreateFcn(hObject, ~, ~) +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +function editBixelWidth_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function editGantryAngle_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function editCouchAngle_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function popupRadMode_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function editFraction_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function popupPlane_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function sliderSlice_CreateFcn(hObject, ~, ~) +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +function popupTypeOfPlot_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function popupDisplayOption_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function sliderBeamSelection_CreateFcn(hObject, ~, ~) +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +function listBoxCmd_CreateFcn(hObject, ~, ~) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +function sliderOffset_CreateFcn(hObject, ~, ~) +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +% --- Executes on selection change in legendTable. +function legendTable_Callback(hObject, eventdata, handles) +% hObject handle to legendTable (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns legendTable contents as cell array +% contents{get(hObject,'Value')} returns selected item from legendTable +cst = evalin('base','cst'); + +idx = get(hObject,'Value'); +clr = dec2hex(round(cst{idx,5}.visibleColor(:)*255),2)'; +clr = ['#';clr(:)]'; + +%Get the string entries +tmpString = get(handles.legendTable,'String'); + +if handles.VOIPlotFlag(idx) + handles.VOIPlotFlag(idx) = false; + cst{idx,5}.Visible = false; + tmpString{idx} = ['
',cst{idx,2},'
']; +elseif ~handles.VOIPlotFlag(idx) + handles.VOIPlotFlag(idx) = true; + cst{idx,5}.Visible = true; + tmpString{idx} = ['
✔
',cst{idx,2},'
']; +end +set(handles.legendTable,'String',tmpString); + +% update cst in workspace accordingly +assignin('base','cst',cst) + +guidata(hObject, handles); +UpdatePlot(handles) + +% --- Executes during object creation, after setting all properties. +function legendTable_CreateFcn(hObject, eventdata, handles) +% hObject handle to legendTable (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: listbox controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on button press in importDoseButton. +function importDoseButton_Callback(hObject,eventdata, handles) +% hObject handle to importDoseButton (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +extensions{1} = '*.nrrd'; +[filenames,filepath,~] = uigetfile(extensions,'MultiSelect','on'); + +if ~iscell(filenames) + tmp = filenames; + filenames = cell(1); + filenames{1} = tmp; +end + +ct = evalin('base','ct'); +resultGUI = evalin('base','resultGUI'); + +for filename = filenames + [~,name,~] = fileparts(filename{1}); + [cube,~] = matRad_readCube(fullfile(filepath,filename{1})); + if ~isequal(ct.cubeDim, size(cube)) + errordlg('Dimensions of the imported cube do not match with ct','Import failed!','modal'); + continue; + end + + fieldname = ['import_' matlab.lang.makeValidName(name, 'ReplacementStyle','delete')]; + resultGUI.(fieldname) = cube; +end + +assignin('base','resultGUI',resultGUI); +btnRefresh_Callback(hObject, eventdata, handles) + +% --- Executes on button press in pushbutton_importFromBinary. +function pushbutton_importFromBinary_Callback(hObject, eventdata, handles) +% hObject handle to pushbutton_importFromBinary (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +try + % delete existing workspace - parse variables from base workspace + set(handles.popupDisplayOption,'String','no option available'); + AllVarNames = evalin('base','who'); + RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; + for i = 1:length(RefVarNames) + if sum(ismember(AllVarNames,RefVarNames{i}))>0 + evalin('base',['clear ', RefVarNames{i}]); + end + end + handles.State = 0; + + %call the gui + uiwait(matRad_importGUI); + + %Check if we have the variables in the workspace + if evalin('base','exist(''cst'',''var'')') == 1 && evalin('base','exist(''ct'',''var'')') == 1 + cst = evalin('base','cst'); + ct = evalin('base','ct'); + %setCstTable(handles,cst); + generateCstTable(hanles,cst); + handles.TableChanged = false; + set(handles.popupTypeOfPlot,'Value',1); + + % compute HU values + if ~isfield(ct, 'cubeHU') + ct = matRad_electronDensitiesToHU(ct); + assignin('base','ct',ct); + end + if ~isfield(ct, 'cubeHU') + handles.cubeHUavailable = false; + else + handles.cubeHUavailable = true; + end + + % precompute contours + cst = precomputeContours(ct,cst); + + assignin('base','ct',ct); + assignin('base','cst',cst); + + if evalin('base','exist(''pln'',''var'')') + assignin('base','pln',pln); + setPln(handles); + else + getPlnFromGUI(handles); + setPln(handles); + end + handles.State = 1; + end + + % set slice slider + handles.plane = get(handles.popupPlane,'value'); + if handles.State >0 + set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... + 'Value',round(ct.cubeDim(handles.plane)/2),... + 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); + end + + if handles.State > 0 + % define context menu for structures + for i = 1:size(cst,1) + if cst{i,5}.Visible + handles.VOIPlotFlag(i) = true; + else + handles.VOIPlotFlag(i) = false; + end + end + end + + handles.dispWindow = cell(3,2); + handles.cBarChanged = true; + + UpdateState(handles); + handles.rememberCurrAxes = false; + UpdatePlot(handles); + handles.rememberCurrAxes = true; +catch + handles = showError(handles,'Binary Patient Import: Could not import data'); + UpdateState(handles); +end + +guidata(hObject,handles); + +% --- Executes on button press in radioBtnIsoCenter. +function radioBtnIsoCenter_Callback(hObject, eventdata, handles) +% hObject handle to radioBtnIsoCenter (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +UpdatePlot(handles) +% Hint: get(hObject,'Value') returns toggle state of radioBtnIsoCenter + +% -------------------------------------------------------------------- +function uipushtool_screenshot_ClickedCallback(hObject, eventdata, handles) +% hObject handle to uipushtool_screenshot (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + + +tmpFig = figure('position',[100 100 700 600],'Visible','off','name','Current View'); +cBarHandle = findobj(handles.figure1,'Type','colorbar'); +if ~isempty(cBarHandle) + new_handle = copyobj([handles.axesFig cBarHandle],tmpFig); +else + new_handle = copyobj(handles.axesFig,tmpFig); +end + +oldPos = get(handles.axesFig,'Position'); +set(new_handle(1),'units','normalized', 'Position',oldPos); + +if ~isfield(handles,'lastStoragePath') || exist(handles.lastStoragePath,'dir') ~= 7 + handles.lastStoragePath = []; +end + +[filename, pathname] = uiputfile({'*.jpg;*.tif;*.png;*.gif','All Image Files'; '*.fig','MATLAB figure file'},'Save current view',[handles.lastStoragePath 'screenshot.png']); + +handles.lastStoragePath = pathname; + +if ~isequal(filename,0) && ~isequal(pathname,0) + set(gcf, 'pointer', 'watch'); + saveas(tmpFig,fullfile(pathname,filename)); + set(gcf, 'pointer', 'arrow'); + close(tmpFig); + uiwait(msgbox('Current view has been succesfully saved!')); +else + uiwait(msgbox('Aborted saving, showing figure instead!')); + set(tmpFig,'Visible','on'); +end + +guidata(hObject,handles); + + +%% Callbacks & Functions for color setting +function UpdateColormapOptions(handles) + +if isfield(handles,'colormapLocked') && handles.colormapLocked + return; +end + +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); + +cMapSelectionIndex = get(handles.popupmenu_chooseColormap,'Value'); +cMapStrings = get(handles.popupmenu_chooseColormap,'String'); + +if selectionIndex > 1 + set(handles.uitoggletool8,'State','on'); +else + set(handles.uitoggletool8,'State','off'); +end + +try + if selectionIndex == 2 + ct = evalin('base','ct'); + currentMap = handles.ctColorMap; + window = handles.dispWindow{selectionIndex,1}; + if isfield(ct, 'cube') + minMax = [min(ct.cube{1}(:)) max(ct.cube{1}(:))]; + else + minMax = [min(ct.cubeHU{1}(:)) max(ct.cubeHU{1}(:))]; + end + % adjust value for custom window to current + handles.windowPresets(1).width = max(window) - min(window); + handles.windowPresets(1).center = mean(window); + % update full window information + handles.windowPresets(2).width = minMax(2) - minMax(1); + handles.windowPresets(2).center = mean(minMax); + elseif selectionIndex == 3 + result = evalin('base','resultGUI'); + dose = result.(handles.SelectedDisplayOption); + currentMap = handles.doseColorMap; + minMax = [min(dose(:)) max(dose(:))]; + window = handles.dispWindow{selectionIndex,1}; + else + window = [0 1]; + minMax = window; + currentMap = 'bone'; + end +catch + window = [0 1]; + minMax = window; + currentMap = 'bone'; +end + +valueRange = minMax(2) - minMax(1); + +windowWidth = window(2) - window(1); +windowCenter = mean(window); + +%This are some arbritrary settings to configure the sliders +sliderCenterMinMax = [minMax(1)-valueRange/2 minMax(2)+valueRange/2]; +sliderWidthMinMax = [0 valueRange*2]; + +%if we have selected a value outside this range, we adapt the slider +%windows +if windowCenter < sliderCenterMinMax(1) + sliderCenterMinMax(1) = windowCenter; +end +if windowCenter > sliderCenterMinMax(2) + sliderCenterMinMax(2) = windowCenter; +end +if windowWidth < sliderWidthMinMax(1) + sliderWidthMinMax(1) = windowWidth; +end +if windowCenter > sliderCenterMinMax(2) + sliderWidthMinMax(2) = windowWidth; +end + + +set(handles.edit_windowCenter,'String',num2str(windowCenter,3)); +set(handles.edit_windowWidth,'String',num2str(windowWidth,3)); +set(handles.edit_windowRange,'String',num2str(window,4)); +set(handles.slider_windowCenter,'Min',sliderCenterMinMax(1),'Max',sliderCenterMinMax(2),'Value',windowCenter); +set(handles.slider_windowWidth,'Min',sliderWidthMinMax(1),'Max',sliderWidthMinMax(2),'Value',windowWidth); + +cMapPopupIndex = find(strcmp(currentMap,cMapStrings)); +set(handles.popupmenu_chooseColormap,'Value',cMapPopupIndex); + +guidata(gcf,handles); + +% --- Executes on selection change in popupmenu_chooseColorData. +function popupmenu_chooseColorData_Callback(hObject, eventdata, handles) +% hObject handle to popupmenu_chooseColorData (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_chooseColorData contents as cell array +% contents{get(hObject,'Value')} returns selected item from popupmenu_chooseColorData + +%index = get(hObject,'Value') - 1; + +handles.cBarChanged = true; + +guidata(hObject,handles); +UpdatePlot(handles); + + +% --- Executes during object creation, after setting all properties. +function popupmenu_chooseColorData_CreateFcn(hObject, eventdata, handles) +% hObject handle to popupmenu_chooseColorData (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: popupmenu controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% --- Executes on slider movement. +function slider_windowCenter_Callback(hObject, eventdata, handles) +% hObject handle to slider_windowCenter (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'Value') returns position of slider +% get(hObject,'Min') and get(hObject,'Max') to determine range of slider + +newCenter = get(hObject,'Value'); +range = get(handles.slider_windowWidth,'Value'); +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); + +handles.dispWindow{selectionIndex,1} = [newCenter-range/2 newCenter+range/2]; +handles.cBarChanged = true; + +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function slider_windowCenter_CreateFcn(hObject, eventdata, handles) +% hObject handle to slider_windowCenter (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: slider controls usually have a light gray background. +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +set(hObject,'Value',0.5); + +% --- Executes on slider movement. +function slider_windowWidth_Callback(hObject, eventdata, handles) +% hObject handle to slider_windowWidth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'Value') returns position of slider +% get(hObject,'Min') and get(hObject,'Max') to determine range of slider + +newWidth = get(hObject,'Value'); +center = get(handles.slider_windowCenter,'Value'); +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); +handles.dispWindow{selectionIndex,1} = [center-newWidth/2 center+newWidth/2]; +handles.cBarChanged = true; + +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function slider_windowWidth_CreateFcn(hObject, eventdata, handles) +% hObject handle to slider_windowWidth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: slider controls usually have a light gray background. +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +set(hObject,'Value',1.0); + + +% --- Executes on selection change in popupmenu_chooseColormap. +function popupmenu_chooseColormap_Callback(hObject, eventdata, handles) +% hObject handle to popupmenu_chooseColormap (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_chooseColormap contents as cell array +% contents{get(hObject,'Value')} returns selected item from popupmenu_chooseColormap + +index = get(hObject,'Value'); +strings = get(hObject,'String'); + +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); + +switch selectionIndex + case 2 + handles.ctColorMap = strings{index}; + case 3 + handles.doseColorMap = strings{index}; + otherwise +end + +handles.cBarChanged = true; + +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function popupmenu_chooseColormap_CreateFcn(hObject, eventdata, handles) +% hObject handle to popupmenu_chooseColormap (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: popupmenu controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +function edit_windowRange_Callback(hObject, eventdata, handles) +% hObject handle to edit_windowRange (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of edit_windowRange as text +% str2double(get(hObject,'String')) returns contents of edit_windowRange as a double + +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); +vRange = str2num(get(hObject,'String')); +% matlab adds a zero in the beginning when text field is changed +if numel(vRange) == 3 + vRange = vRange(vRange~=0); +end + +handles.dispWindow{selectionIndex,1} = sort(vRange); + +handles.cBarChanged = true; + + % compute new iso dose lines +if selectionIndex > 2 + guidata(hObject,handles); + handles = updateIsoDoseLineCache(handles); +end + +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function edit_windowRange_CreateFcn(hObject, eventdata, handles) +% hObject handle to edit_windowRange (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +set(hObject,'String','0 1'); + + +function edit_windowCenter_Callback(hObject, eventdata, handles) +% hObject handle to edit_windowCenter (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of edit_windowCenter as text +% str2double(get(hObject,'String')) returns contents of edit_windowCenter as a double + +newCenter = str2double(get(hObject,'String')); +width = get(handles.slider_windowWidth,'Value'); +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); +handles.dispWindow{selectionIndex,1} = [newCenter-width/2 newCenter+width/2]; +handles.cBarChanged = true; +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function edit_windowCenter_CreateFcn(hObject, eventdata, handles) +% hObject handle to edit_windowCenter (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + + +function edit_windowWidth_Callback(hObject, eventdata, handles) +% hObject handle to edit_windowWidth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'String') returns contents of edit_windowWidth as text +% str2double(get(hObject,'String')) returns contents of edit_windowWidth as a double + +newWidth = str2double(get(hObject,'String')); +center = get(handles.slider_windowCenter,'Value'); +selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); +handles.dispWindow{selectionIndex,1} = [center-newWidth/2 center+newWidth/2]; +handles.cBarChanged = true; +guidata(hObject,handles); +UpdatePlot(handles); + + +% --- Executes during object creation, after setting all properties. +function edit_windowWidth_CreateFcn(hObject, eventdata, handles) +% hObject handle to edit_windowWidth (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: edit controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + + +% -------------------------------------------------------------------- +function uitoggletool8_ClickedCallback(hObject, eventdata, handles) +% hObject handle to uitoggletool8 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +%Check if on or off +val = strcmp(get(hObject,'State'),'on'); + +%Now we have to apply the new selection to our colormap options panel +if ~val + newSelection = 1; +else + %Chooses the selection from the highest state + selections = get(handles.popupmenu_chooseColorData,'String'); + newSelection = numel(selections); +end +set(handles.popupmenu_chooseColorData,'Value',newSelection); + +handles.cBarChanged = true; +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes on slider movement. +function sliderOpacity_Callback(hObject, eventdata, handles) +% hObject handle to sliderOpacity (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +handles.doseOpacity = get(hObject,'Value'); +guidata(hObject,handles); +UpdatePlot(handles); + +% --- Executes during object creation, after setting all properties. +function sliderOpacity_CreateFcn(hObject, eventdata, handles) +% hObject handle to sliderOpacity (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: slider controls usually have a light gray background. +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + +%% Data Cursors +function cursorText = dataCursorUpdateFunction(obj,event_obj) +% Display the position of the data cursor +% obj Currently not used (empty) +% event_obj Handle to event object +% output_txt Data cursor text string (string or cell array of strings). + +target = findall(0,'Name','matRadGUI'); + +% Get GUI data (maybe there is another way?) +handles = guidata(target); + +% position of the data point to label +pos = get(event_obj,'Position'); + +%Different behavior for image and profile plot +if get(handles.popupTypeOfPlot,'Value')==1 %Image view + cursorText = cell(0,1); + try + if handles.State >= 1 + plane = get(handles.popupPlane,'Value'); + slice = round(get(handles.sliderSlice,'Value')); + + %Get the CT values + ct = evalin('base','ct'); + + %We differentiate between pos and ix, since the user may put + %the datatip on an isoline which returns a continous position + cubePos = zeros(1,3); + cubePos(plane) = slice; + cubePos(1:end ~= plane) = fliplr(pos); + cubeIx = round(cubePos); + + %Here comes the index permutation stuff + %Cube Index + cursorText{end+1,1} = ['Cube Index: ' mat2str(cubeIx)]; + %Space Coordinates + coords = zeros(1,3); + coords(1) = cubePos(2)*ct.resolution.y; + coords(2) = cubePos(1)*ct.resolution.x; + coords(3) = cubePos(3)*ct.resolution.z; + cursorText{end+1,1} = ['Space Coordinates: ' mat2str(coords,5) ' mm']; + + ctVal = ct.cubeHU{1}(cubeIx(1),cubeIx(2),cubeIx(3)); + cursorText{end+1,1} = ['HU Value: ' num2str(ctVal,3)]; + end + + %Add dose information if available + if handles.State == 3 + %get result structure + result = evalin('base','resultGUI'); + + %Get all result names from popup + resultNames = get(handles.popupDisplayOption,'String'); + + %Display all values of fields found in the resultGUI struct + for runResult = 1:numel(resultNames) + name = resultNames{runResult}; + if isfield(result,name) + field = result.(name); + val = field(cubeIx(1),cubeIx(2),cubeIx(3)); + cursorText{end+1,1} = [name ': ' num2str(val,3)]; + end + end + end + catch + cursorText{end+1,1} = 'Error while retreiving Data!'; + end +else %Profile view + cursorText = cell(2,1); + cursorText{1} = ['Radiological Depth: ' num2str(pos(1),3) ' mm']; + cursorText{2} = [get(target,'DisplayName') ': ' num2str(pos(2),3)]; +end + + + +% --- Executes on selection change in popMenuBioOpt. +function popMenuBioOpt_Callback(hObject, ~, handles) +pln = evalin('base','pln'); +contentBioOpt = get(handles.popMenuBioOpt,'String'); +NewBioOptimization = contentBioOpt(get(handles.popMenuBioOpt,'Value'),:); + +if handles.State > 0 + if (strcmp(pln.propOpt.bioOptimization,'LEMIV_effect') && strcmp(NewBioOptimization,'LEMIV_RBExD')) ||... + (strcmp(pln.propOpt.bioOptimization,'LEMIV_RBExD') && strcmp(NewBioOptimization,'LEMIV_effect')) + % do nothing - re-optimization is still possible + elseif ((strcmp(pln.propOpt.bioOptimization,'const_RBE') && strcmp(NewBioOptimization,'none')) ||... + (strcmp(pln.propOpt.bioOptimization,'none') && strcmp(NewBioOptimization,'const_RBE'))) && isequal(pln.radiationMode,'protons') + % do nothing - re-optimization is still possible + else + handles.State = 1; + end +end +getPlnFromGUI(handles); + +UpdateState(handles); +guidata(hObject,handles); + +% --- Executes during object creation, after setting all properties. +function popMenuBioOpt_CreateFcn(hObject, eventdata, handles) +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% --- Executes on button press in btn3Dview. +function btn3Dview_Callback(hObject, eventdata, handles) +% hObject handle to btn3Dview (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +if ~isfield(handles,'axesFig3D') || ~isfield(handles,'axesFig3D') || ~isgraphics(handles.axesFig3D) + handles.fig3D = figure('Name','matRad 3D View'); + handles.axesFig3D = axes('Parent',handles.fig3D); + view(handles.axesFig3D,3); +end +%end + +UpdatePlot(handles); + +guidata(hObject,handles); + +% --- Executes on button press in radiobtnCT. +function radiobtnCT_Callback(hObject, eventdata, handles) +% hObject handle to radiobtnCT (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobtnCT +UpdatePlot(handles) + +% --- Executes on button press in radiobtnPlan. +function radiobtnPlan_Callback(hObject, eventdata, handles) +% hObject handle to radiobtnPlan (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobtnPlan +UpdatePlot(handles) + + +% --- Executes on selection change in popupmenu_windowPreset. +function popupmenu_windowPreset_Callback(hObject, eventdata, handles) +% hObject handle to popupmenu_windowPreset (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_windowPreset contents as cell array +% contents{get(hObject,'Value')} returns selected item from popupmenu_windowPreset + +selectionIndexCube = 2; % working on ct only +selectionIndexWindow = get(handles.popupmenu_windowPreset,'Value'); +newCenter = handles.windowPresets(selectionIndexWindow).center; +newWidth = handles.windowPresets(selectionIndexWindow).width; + +handles.dispWindow{selectionIndexCube,1} = [newCenter - newWidth/2 newCenter + newWidth/2]; +handles.cBarChanged = true; +guidata(hObject,handles); +UpdatePlot(handles); +UpdateColormapOptions(handles); + + +% --- Executes during object creation, after setting all properties. +function popupmenu_windowPreset_CreateFcn(hObject, eventdata, handles) +% hObject handle to popupmenu_windowPreset (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: popupmenu controls usually have a white background on Windows. +% See ISPC and COMPUTER. +if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor','white'); +end + +% setup ct window list +% data and values from CERR https://github.com/adityaapte/CERR +windowNames = {'Custom','Full','Abd/Med', 'Head', 'Liver', 'Lung', 'Spine', 'Vrt/Bone'}; +windowCenter = {NaN, NaN, -10, 45, 80, -500, 30, 400}; +windowWidth = {NaN, NaN, 330, 125, 305, 1500, 300, 1500}; +windowPresets = cell2struct([windowNames', windowCenter', windowWidth'], {'name', 'center', 'width'},2); + + +handles.windowPresets = windowPresets; + +selectionList = {windowPresets(:).name}; +set(hObject,'String',selectionList(:)); +set(hObject,'Value',1); + + +guidata(hObject,handles); + +% --- Executes on button press in checkbox_lockColormap. +function checkbox_lockColormap_Callback(hObject, eventdata, handles) +% hObject handle to checkbox_lockColormap (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of checkbox_lockColormap +handles.colormapLocked = get(hObject,'Value'); + +if handles.colormapLocked + state = 'Off'; %'Inactive'; +else + state = 'On'; +end + +set(handles.popupmenu_chooseColorData,'Enable',state); +set(handles.popupmenu_windowPreset,'Enable',state); +set(handles.slider_windowWidth,'Enable',state); +set(handles.slider_windowCenter,'Enable',state); +set(handles.edit_windowWidth,'Enable',state); +set(handles.edit_windowCenter,'Enable',state); +set(handles.edit_windowRange,'Enable',state); +set(handles.popupmenu_chooseColormap,'Enable',state); + + +guidata(hObject,handles); + + +function cst = updateStructureTable(handles,cst) +colorAssigned = true; + +% check whether all structures have an assigned color +for i = 1:size(cst,1) + if ~isfield(cst{i,5},'visibleColor') + colorAssigned = false; + break; + elseif isempty(cst{i,5}.visibleColor) + colorAssigned = false; + break; + end +end + +% assign color if color assignment is not already present or inconsistent +if colorAssigned == false + m = 64; + colorStep = ceil(m/size(cst,1)); + colors = colorcube(colorStep*size(cst,1)); + % spread individual VOI colors in the colorcube color palette + colors = colors(1:colorStep:end,:); + + for i = 1:size(cst,1) + cst{i,5}.visibleColor = colors(i,:); + end +end + +for s = 1:size(cst,1) + handles.VOIPlotFlag(s) = cst{s,5}.Visible; + clr = dec2hex(round(cst{s,5}.visibleColor(:)*255),2)'; + clr = ['#';clr(:)]'; + if handles.VOIPlotFlag(s) + tmpString{s} = ['
✔
',cst{s,2},'
']; + else + tmpString{s} = ['
',cst{s,2},'
']; + end +end +set(handles.legendTable,'String',tmpString); + +%-- generates the CST table +function cst = generateCstTable(handles,cst) + +cst = updateStructureTable(handles,cst); + +cstPanel = handles.uipanel3; + +cstPanelPos = getpixelposition(cstPanel); + +%Parameters for line height +objHeight = 22; +lineHeight = 25; %Height of a table line +fieldSep = 2; %Separation between fields horizontally +yTopSep = 40; %Separation of the first line from the top +tableViewHeight = cstPanelPos(4) - yTopSep; %Full height of the view + +%Widths of the fields +buttonW = objHeight; +nameW = 90; +typeW = 70; +opW = objHeight; +functionW = 120; +penaltyW = 40; +paramTitleW = 120; +paramW = 30; + + +%Scrollbar +cstVertTableScroll = findobj(cstPanel.Children,'Style','slider'); +if isempty(cstVertTableScroll) + sliderPos = 0; +else + sliderPos = cstVertTableScroll.Max - cstVertTableScroll.Value; +end +%disp(num2str(sliderPos)); +ypos = @(c) tableViewHeight - c*lineHeight + sliderPos; + +delete(cstPanel.Children); + +%Creates a dummy axis to allow for the use of textboxes instead of uicontrol to be able to use the (la)tex interpreter +tmpAxes = axes('Parent',cstPanel,'units','normalized','position',[0 0 1 1],'visible','off'); + +organTypes = {'OAR', 'TARGET'}; + +%columnname = {'VOI name','VOI type','priority','obj. / const.'};%,'penalty','dose', 'EUD','volume','robustness'}; + +%Get all Classes & classNames +mpkgObjectives = meta.package.fromName('DoseObjectives'); +mpkgConstraints = meta.package.fromName('DoseConstraints'); +classList = [mpkgObjectives.ClassList; mpkgConstraints.ClassList]; + +classList = classList(not([classList.Abstract])); + +%Now get the "internal" name from the properties +classNames = cell(2,numel(classList)); +for clIx = 1:numel(classList) + cl = classList(clIx); + pList = cl.PropertyList; %Get List of all properties + pNameIx = arrayfun(@(p) strcmp(p.Name,'name'),pList); %get index of the "name" property + p = pList(pNameIx); %select name property + pName = p.DefaultValue; % get value / name + classNames(:,clIx) = {cl.Name; pName}; %Store class name and display name +end + +% Collect Class-File & Display Names +%classNames = {classList.Name; p.DefaultValue}; + +%columnformat = {cst(:,2)',{'OAR','TARGET'},'numeric',... +% AllObjectiveFunction,... +% 'numeric','numeric','numeric','numeric',{'none','WC','prob'}}; + +numOfObjectives = 0; +for i = 1:size(cst,1) + if ~isempty(cst{i,6}) + numOfObjectives = numOfObjectives + numel(cst{i,6}); + end +end + +cnt = 0; + +newline = '\n'; + +%Setup Headlines +xPos = 5; +h = uicontrol(cstPanel,'Style','text','String','+/-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove or add Constraint or Objective'); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','VOI name','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name of the structure with objective/constraint'); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','VOI type','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification'); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','OP','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' char(10) '(Smaller number overlaps higher number)']); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','Function','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Objective/Constraint function type'); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','p','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Optimization penalty'); +xPos = xPos + h.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','text','String','| Parameters','Position',[xPos ypos(cnt) paramTitleW objHeight],'TooltipString','List of parameters','HorizontalAlignment','left'); +xPos = xPos + h.Position(3) + fieldSep; +cnt = cnt + 1; + +%Create Objectives / Constraints controls +for i = 1:size(cst,1) + if strcmp(cst(i,3),'IGNORED')~=1 + for j=1:numel(cst{i,6}) + + obj = cst{i,6}{j}; + + %Convert to class if not + if ~isa(obj,'matRad_DoseOptimizationFunction') + try + obj = matRad_DoseOptimizationFunction.createInstanceFromStruct(obj); + catch + warning('Objective/Constraint not valid!') + continue; + end + end + + %VOI + %data{Counter,1} = cst{i,2}; + %ypos = cstPanelPos(4) - (yTopSep + cnt*lineHeight); + xPos = 5; + + %h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos 100 objHeight]); + %h.Value = i; + h = uicontrol(cstPanel,'Style','pushbutton','String','-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove Objective/Constraint','Callback',{@btObjRemove_Callback,handles},... + 'UserData',[i,j]); + xPos = xPos + h.Position(3) + fieldSep; + h = uicontrol(cstPanel','Style','edit','String',cst{i,2},'Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name',... + 'Enable','inactive',... %Disable editing of name atm + 'UserData',[i,2],'Callback',{@editCstParams_Callback,handles}); %Callback added, however, editing is disabled atm + xPos = xPos + h.Position(3) + fieldSep; + h = uicontrol(cstPanel,'Style','popupmenu','String',organTypes','Value',find(strcmp(cst{i,3},organTypes)),'Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification',... + 'UserData',[i,3],'Callback',{@editCstParams_Callback,handles}); + xPos = xPos + h.Position(3) + fieldSep; + h = uicontrol(cstPanel,'Style','edit','String',num2str(cst{i,5}.Priority),'Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' newline '(Smaller number overlaps higher number)'],... + 'UserData',[i,5],'Callback',{@editCstParams_Callback,handles}); + xPos = xPos + h.Position(3) + fieldSep; + + h = uicontrol(cstPanel,'Style','popupmenu','String',classNames(2,:)','Value',find(strcmp(obj.name,classNames(2,:))),'Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Select Objective/Constraint',... + 'UserData',{[i,j],classNames(1,:)},'Callback',{@changeObjFunction_Callback,handles}); + xPos = xPos + h.Position(3) + fieldSep; + + %Check if we have an objective to display penalty + if isa(obj,'DoseObjectives.matRad_DoseObjective') + h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.penalty),'Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Objective Penalty','UserData',[i,j,0],'Callback',{@editObjParam_Callback,handles}); + else + h = uicontrol(cstPanel,'Style','edit','String','----','Position',[xPos ypos(cnt) penaltyW objHeight],'Enable','off'); + end + xPos = xPos + h.Position(3) + fieldSep; + + for p = 1:numel(obj.parameterNames) + %h = uicontrol(cstPanel,'Style','edit','String',obj.parameters{1,p},'Position',[xPos ypos(cnt) 100 objHeight],'Enable','inactive'); + %xPos = xPos + h.Position(3) + fieldSep; + h = text('Parent',tmpAxes,'String',['| ' obj.parameterNames{p} ':'],'VerticalAlignment','middle','units','pix','Position',[xPos ypos(cnt)+lineHeight/2],'Interpreter','tex','FontWeight','normal',... + 'FontSize',cstPanel.FontSize,'FontName',cstPanel.FontName,'FontUnits',cstPanel.FontUnits,'FontWeight','normal');%[xPos ypos(cnt) 100 objHeight]); + xPos = xPos + h.Extent(3) + fieldSep; + %h = annotation(cstPanel,'textbox','String',obj.parameters{1,p},'Units','pix','Position', [xPos ypos(cnt) 100 objHeight],'Interpreter','Tex'); + + %Check if we have a cell and therefore a parameter list + if iscell(obj.parameterTypes{p}) + h = uicontrol(cstPanel,'Style','popupmenu','String',obj.parameterTypes{p}','Value',obj.parameters{p},'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW*2 objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); + else + h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.parameters{p}),'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); + end + + xPos = xPos + h.Position(3) + fieldSep; + end + + cnt = cnt +1; + end + end +end +xPos = 5; +hAdd = uicontrol(cstPanel,'Style','pushbutton','String','+','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Add Objective/Constraint','Callback',{@btObjAdd_Callback,handles}); +xPos = xPos + hAdd.Position(3) + fieldSep; +h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos(cnt) nameW objHeight]); +hAdd.UserData = h; + +%Calculate Scrollbar +lastPos = ypos(cnt); +firstPos = ypos(0); +tableHeight = abs(firstPos - lastPos); + +exceedFac = tableHeight / tableViewHeight; +if exceedFac > 1 + sliderFac = exceedFac - 1; + uicontrol(cstPanel,'Style','slider','Units','normalized','Position',[0.975 0 0.025 1],'Min',0,'Max',ceil(sliderFac)*tableViewHeight,'SliderStep',[lineHeight tableViewHeight] ./ (ceil(sliderFac)*tableViewHeight),'Value',ceil(sliderFac)*tableViewHeight - sliderPos,'Callback',{@cstTableSlider_Callback,handles}); +end + + + + +%set(handles.uiTable,'ColumnName',columnname); +%set(handles.uiTable,'ColumnFormat',columnformat); +%set(handles.uiTable,'ColumnEditable',[true true true true true true true true true true]); +%set(handles.uiTable,'Data',data); + + +% --- Executes when uipanel3 is resized. +function uipanel3_SizeChangedFcn(hObject, eventdata, handles) +% hObject handle to uipanel3 (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +try + generateCstTable(handles,evalin('base','cst')); +catch +end + +function btObjAdd_Callback(hObject, ~, handles) +% hObject handle to btnuiTableAdd (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +popupHandle = hObject.UserData; +cstIndex = popupHandle.Value; + +cst = evalin('base','cst'); +%Add Standard Objective +if strcmp(cst{cstIndex,3},'TARGET') + cst{cstIndex,6}{end+1} = struct(DoseObjectives.matRad_SquaredDeviation); +else + cst{cstIndex,6}{end+1} = struct(DoseObjectives.matRad_SquaredOverdosing); +end + +assignin('base','cst',cst); + +%set(handles.uiTable,'data',data); + +%handles.State=1; +%guidata(hObject,handles); +%UpdateState(handles); + +generateCstTable(handles,cst); + +function btObjRemove_Callback(hObject, ~, handles) +% hObject handle to btnuiTableAdd (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +ix = hObject.UserData; + +cst = evalin('base','cst'); +%Add Standard Objective + +cst{ix(1),6}(ix(2)) = []; + +assignin('base','cst',cst); + +%set(handles.uiTable,'data',data); + +%handles.State=1; +%guidata(hObject,handles); +%UpdateState(handles); + +generateCstTable(handles,cst); + +function editObjParam_Callback(hObject, ~, handles) +% hObject handle to btnuiTableAdd (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +ix = hObject.UserData; + +cst = evalin('base','cst'); +%Add Standard Objective + +%if the third index is 0 we changed the penalty +%if we have a popupmenu selection we use value +%otherwise we use the edit string + +%{ +%obj = cst{ix(1),6}{ix(2)}; +%Convert to class if not +if ~isa(obj,'matRad_DoseOptimizationFunction') + try + eval([obj.className '(obj)']); + catch + warning('Objective/Constraint not valid!') + return; + end +end +%} + +if ix(3) == 0 + cst{ix(1),6}{ix(2)}.penalty = str2double(hObject.String); +elseif isequal(hObject.Style,'popupmenu') + cst{ix(1),6}{ix(2)}.parameters{ix(3)} = hObject.Value; +else + cst{ix(1),6}{ix(2)}.parameters{ix(3)} = str2double(hObject.String); +end + +assignin('base','cst',cst); + +%set(handles.uiTable,'data',data); + +%handles.State=1; +%guidata(hObject,handles); +%UpdateState(handles); + +generateCstTable(handles,cst); + +function changeObjFunction_Callback(hObject, ~, handles) +% hObject handle to btnuiTableAdd (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) +data = hObject.UserData; +ix = data{1}; +classNames = data{2}; +classToCreate = classNames{hObject.Value}; + +cst = evalin('base','cst'); +%Add Standard Objective + +%We just check if the user really wanted to change the objective to be +%user-friendly +currentObj = cst{ix(1),6}{ix(2)}; +currentClass = class(currentObj); +if ~strcmp(currentClass,classToCreate) + newObj = eval(classToCreate); + + % Only if we have a penalty value for optimization, apply the new one + % Maybe this check should be more exact? + if (isfield(currentObj,'penalty') || isprop(currentObj,'penalty')) && isprop(newObj,'penalty') + newObj.penalty = currentObj.penalty; + end + + cst{ix(1),6}{ix(2)} = struct(newObj); + + assignin('base','cst',cst); + + %set(handles.uiTable,'data',data); + + %handles.State=1; + %guidata(hObject,handles); + %UpdateState(handles); + + generateCstTable(handles,cst); +end + +function editCstParams_Callback(hObject,~,handles) +data = hObject.UserData; +ix = data(1); +col = data(2); + +cst = evalin('base','cst'); + +switch col + case 2 + cst{ix,col} = hObject.String; + case 3 + cst{ix,col} = hObject.String{hObject.Value}; + case 5 + cst{ix,col}.Priority = uint32(str2double(hObject.String)); + otherwise + warning('Wrong column assignment in GUI based cst setting'); +end + +assignin('base','cst',cst); + +generateCstTable(handles,cst); + + +% --- Executes on button press in radiobutton3Dconf. +function radiobutton3Dconf_Callback(hObject, eventdata, handles) +% hObject handle to radiobutton3Dconf (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hint: get(hObject,'Value') returns toggle state of radiobutton3Dconf + +function x = matRad_checkForConnectedBixelRows(stf) + +x = true; + +for i = 1:size(stf,2) + + bixelPos = reshape([stf(i).ray.rayPos_bev],3,[]); + + rowCoords = unique(bixelPos(3,:)); + + for j = 1:numel(rowCoords) + + increments = diff(bixelPos(1,rowCoords(j) == bixelPos(3,:))); + + % if we find one not connected row -> return false + if numel(unique(increments)) > 1 + x = false; + return; + end + end + +end + +% --- Executes on slider movement. +function cstTableSlider_Callback(hObject, eventdata, handles) +% hObject handle to cstTableSlider (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles structure with handles and user data (see GUIDATA) + +% Hints: get(hObject,'Value') returns position of slider +% get(hObject,'Min') and get(hObject,'Max') to determine range of slider +generateCstTable(handles,evalin('base','cst')); + +% --- Executes during object creation, after setting all properties. +function cstTableSlider_CreateFcn(hObject, eventdata, handles) +% hObject handle to cstTableSlider (see GCBO) +% eventdata reserved - to be defined in a future version of MATLAB +% handles empty - handles not created until after all CreateFcns called + +% Hint: slider controls usually have a light gray background. +if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) + set(hObject,'BackgroundColor',[.9 .9 .9]); +end + + + +% --- Creates and returns a handle to the GUI figure. +function h1 = matRadGUI_export_LayoutFcn(policy) +% policy - create a new figure or use a singleton. 'new' or 'reuse'. + +persistent hsingleton; +if strcmpi(policy, 'reuse') & ishandle(hsingleton) + h1 = hsingleton; + return; +end +load matRadGUI_export.mat + + +appdata = []; +appdata.GUIDEOptions = mat{1}; +appdata.lastValidTag = 'figure1'; +appdata.UsedByGUIData_m = struct(... + 'windowPresets', struct(... + 'name', 'Custom', ... + 'center', NaN, ... + 'width', NaN)); +appdata.GUIDELayoutEditor = []; +appdata.initTags = struct(... + 'handle', [], ... + 'tag', 'figure1'); + +h1 = figure(... +'PaperUnits',get(0,'defaultfigurePaperUnits'),... +'Units','characters',... +'Position',[138.4 -7.38461538461539 273.4 59.5384615384615],... +'Visible','on',... +'Color',[0.501960784313725 0.501960784313725 0.501960784313725],... +'CloseRequestFcn',@(hObject,eventdata)matRadGUI_export('figure1_CloseRequestFcn',hObject,eventdata,guidata(hObject)),... +'IntegerHandle','off',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'MenuBar','none',... +'Name','matRadGUI',... +'NumberTitle','off',... +'Tag','figure1',... +'UserData',[],... +'PaperPosition',get(0,'defaultfigurePaperPosition'),... +'PaperSize',[20.99999864 29.69999902],... +'PaperType',get(0,'defaultfigurePaperType'),... +'InvertHardcopy',get(0,'defaultfigureInvertHardcopy'),... +'ScreenPixelsPerInchMode','manual',... +'HandleVisibility','callback',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'axesLogo'; + +h2 = axes(... +'Parent',h1,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[1 0.288951841359773 0.288951841359773],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'ColormapMode',get(0,'defaultaxesColormapMode'),... +'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... +'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... +'XTick',[0 0.2 0.4 0.6 0.8 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.5 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.5'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'CameraMode',get(0,'defaultaxesCameraMode'),... +'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... +'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... +'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... +'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... +'XRulerMode',get(0,'defaultaxesXRulerMode'),... +'YRulerMode',get(0,'defaultaxesYRulerMode'),... +'ZRulerMode',get(0,'defaultaxesZRulerMode'),... +'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... +'Tag','axesLogo',... +'Position',[0.444874274661509 0.893725992317542 0.184397163120567 0.0998719590268886],... +'ActivePositionProperty','position',... +'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... +'LooseInset',[0.182759687929063 0.112926163636008 0.133555156563546 0.0769951115700055],... +'FontSize',9.63,... +'SortMethod','childorder',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h3 = get(h2,'title'); + +set(h3,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0 0 0],... +'ColorMode','auto',... +'Position',[0.500002778623327 1.02596323529412 0.5],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','bold',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','Axes Title',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h4 = get(h2,'xlabel'); + +set(h4,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0.500000476837158 -0.277303926477245 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h5 = get(h2,'ylabel'); + +set(h5,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[-0.0943626077857305 0.500000476837158 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h6 = get(h2,'zlabel'); + +set(h6,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','off',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +appdata = []; +appdata.lastValidTag = 'axesDKFZ'; + +h7 = axes(... +'Parent',h1,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[1 0.145161290322581 0.145161290322581],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'ColormapMode',get(0,'defaultaxesColormapMode'),... +'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... +'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... +'XTick',[0 0.2 0.4 0.6 0.8 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.5 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.5'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'CameraMode',get(0,'defaultaxesCameraMode'),... +'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... +'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... +'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... +'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... +'XRulerMode',get(0,'defaultaxesXRulerMode'),... +'YRulerMode',get(0,'defaultaxesYRulerMode'),... +'ZRulerMode',get(0,'defaultaxesZRulerMode'),... +'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... +'Tag','axesDKFZ',... +'Position',[0.652482269503546 0.903969270166453 0.259187620889749 0.0717029449423816],... +'ActivePositionProperty','position',... +'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... +'LooseInset',[0.13 0.11 0.0950000000000001 0.0749999999999999],... +'FontSize',9.63,... +'SortMethod','childorder',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h8 = get(h7,'title'); + +set(h8,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0 0 0],... +'ColorMode','auto',... +'Position',[0.500002880250254 1.03678125 0.500000000000007],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','bold',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','Axes Title',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h9 = get(h7,'xlabel'); + +set(h9,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0.500000476837158 -0.392847229176095 7.105427357601e-15],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h10 = get(h7,'ylabel'); + +set(h10,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[-0.0671572591700866 0.50000047683716 7.105427357601e-15],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h11 = get(h7,'zlabel'); + +set(h11,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','off',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +appdata = []; +appdata.lastValidTag = 'uipanel1'; + +h12 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title','Plan',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel1',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.527528809218956 0.430689877498388 0.272727272727273],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtBixelWidth'; + +h13 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','bixel width in [mm]',... +'Style','text',... +'Position',[0.0347043701799486 0.859315589353612 0.17866323907455 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtBixelWidth',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editBixelWidth'; + +h14 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','5',... +'Style','edit',... +'Position',[0.219794344473008 0.889733840304182 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editBixelWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editBixelWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editBixelWidth',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtGantryAngle'; + +h15 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Gantry Angle in °',... +'Style','text',... +'Position',[0.032133676092545 0.752851711026616 0.176092544987147 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtGantryAngle',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editGantryAngle'; + +h16 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','0',... +'Style','edit',... +'Position',[0.219794344473008 0.779467680608365 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editGantryAngle_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editGantryAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editGantryAngle',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtCouchAngle'; + +h17 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Couch Angle in °',... +'Style','text',... +'Position',[0.0347043701799486 0.64638783269962 0.173521850899743 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtCouchAngle',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editCouchAngle'; + +h18 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','0',... +'Style','edit',... +'Position',[0.219794344473008 0.669201520912547 0.161953727506427 0.0836501901140685],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editCouchAngle_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editCouchAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editCouchAngle',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'popupRadMode'; + +h19 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'photons'; 'protons'; 'carbon' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.52851711026616 0.161953727506427 0.114068441064639],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupRadMode_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupRadMode_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupRadMode',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtRadMode'; + +h20 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Radiation Mode',... +'Style','text',... +'Position',[0.051413881748072 0.539923954372624 0.146529562982005 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtRadMode',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtNumOfFractions'; + +h21 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','# Fractions',... +'Style','text',... +'Position',[0.051413881748072 0.209125475285171 0.143958868894602 0.106463878326996],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtNumOfFractions',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editFraction'; + +h22 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','30',... +'Style','edit',... +'Position',[0.219794344473008 0.228136882129278 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editFraction_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editFraction_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editFraction',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtIsoCenter'; + +h23 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','IsoCenter in [mm]',... +'Style','text',... +'Position',[0.0282776349614396 0.330798479087452 0.201799485861183 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtIsoCenter',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editIsoCenter'; + +h24 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','0 0 0',... +'Style','edit',... +'Position',[0.219794344473008 0.338403041825095 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editIsoCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editIsoCenter',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'checkIsoCenter'; + +h25 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Auto.',... +'Style','checkbox',... +'Value',1,... +'Position',[0.38560411311054 0.338403041825095 0.0809768637532133 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('checkIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','checkIsoCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRunSequencing'; + +h26 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Run Sequencing',... +'Style','radiobutton',... +'Position',[0.553984575835475 0.628020880324805 0.173521850899743 0.140684410646388],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnRunSequencing_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnRunSequencing',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRunDAO'; + +h27 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Run Direct Aperture Optimization',... +'Style','radiobutton',... +'Position',[0.553984575835475 0.32003608945028 0.294344473007712 0.140684410646388],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnRunDAO_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnRunDAO',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtSequencing'; + +h28 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Stratification Levels',... +'Style','text',... +'Position',[0.553984575835475 0.502545595153702 0.179948586118252 0.102661596958175],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtSequencing',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editSequencingLevel'; + +h29 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','7',... +'Style','edit',... +'Position',[0.58611825192802 0.449313655990204 0.0668380462724936 0.0836501901140685],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('editSequencingLevel_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editSequencingLevel_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editSequencingLevel',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'popUpMachine'; + +h30 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',['Generic';' '],... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.418250950570342 0.161953727506427 0.114068441064639],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popUpMachine_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popUpMachine_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popUpMachine',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtMachine'; + +h31 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Machine',... +'Style','text',... +'Position',[0.0732647814910026 0.433460076045627 0.106683804627249 0.0950570342205323],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMachine',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSetTissue'; + +h32 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Set Tissue',... +'Position',[0.401028277634961 0.110266159695817 0.109254498714653 0.0874524714828897],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnSetTissue_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnSetTissue',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popMenuBioOpt'; + +h33 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'none'; 'const_RBExD'; 'LEMIV_effect'; 'LEMIV_RBExD' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.0760456273764259 0.165809768637532 0.11787072243346],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popMenuBioOpt_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popMenuBioOpt_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popMenuBioOpt',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'text38'; + +h34 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Type of optimization',... +'Style','text',... +'Position',[0.0102827763496144 0.0988593155893536 0.201799485861183 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Interruptible','off',... +'Tag','text38',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobutton3Dconf'; + +h35 = uicontrol(... +'Parent',h12,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','3D conformal',... +'Style','radiobutton',... +'Position',[0.553224553224553 0.757869249394673 0.212121212121212 0.0847457627118644],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobutton3Dconf_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','radiobutton3Dconf',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel2'; + +h36 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title',{ 'Visualization'; ' ' },... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel2',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.0460947503201024 0.430689877498388 0.203585147247119],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupPlane'; + +h37 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'coronal'; 'sagital'; 'axial' },... +'Style','popupmenu',... +'Value',3,... +'Position',[0.465315808689303 0.582191780821918 0.113636363636364 0.143835616438356],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupPlane_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupPlane_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupPlane',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'sliderSlice'; + +h38 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'Slider' },... +'Style','slider',... +'Position',[0.134961439588689 0.796610169491525 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('sliderSlice_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderSlice_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderSlice'); + +appdata = []; +appdata.lastValidTag = 'txtPlanSelection'; + +h39 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Plane Selection',... +'Style','text',... +'Position',[0.34258853596203 0.589041095890411 0.11969696969697 0.116438356164384],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtPlanSelection',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text9'; + +h40 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Slice Selection',... +'Style','text',... +'Position',[0.00909090909090909 0.808219178082192 0.113636363636364 0.116438356164384],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text9',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnContour'; + +h41 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot contour',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.733212341197822 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnContour_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnContour',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnDose'; + +h42 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot dose',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.466969147005444 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnDose_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnDose',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnIsoDoseLines'; + +h43 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot isolines',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.600907441016334 0.150943396226415 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnIsoDoseLines_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnIsoDoseLines',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtTypeOfPlot'; + +h44 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Type of plot',... +'Style','text',... +'Position',[0.343053173241852 0.793103448275862 0.108061749571183 0.124137931034483],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtTypeOfPlot',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupTypeOfPlot'; + +h45 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'intensity'; 'profile' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.465315808689303 0.801369863013699 0.113636363636364 0.143835616438356],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupTypeOfPlot_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupTypeOfPlot_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupTypeOfPlot',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtDisplayOption'; + +h46 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Display option',... +'Style','text',... +'Position',[0.34258853596203 0.39041095890411 0.128787878787879 0.102739726027397],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtDisplayOption',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupDisplayOption'; + +h47 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Please select ... ',... +'Style','popupmenu',... +'Value',1,... +'Position',[0.465315808689303 0.36986301369863 0.196969696969697 0.136986301369863],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupDisplayOption_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupDisplayOption_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupDisplayOption',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtBeamSelection'; + +h48 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Beam Selection',... +'Style','text',... +'Position',[0.00857632933104631 0.503448275862069 0.118353344768439 0.186206896551724],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtBeamSelection',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'sliderBeamSelection'; + +h49 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','SliderBeamSelection',... +'Style','slider',... +'Position',[0.134961439588689 0.542372881355932 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('sliderBeamSelection_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderBeamSelection_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderBeamSelection'); + +appdata = []; +appdata.lastValidTag = 'btnProfileType'; + +h50 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','lateral',... +'Position',[0.658025928757913 0.794520547945205 0.0863636363636364 0.157534246575343],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnProfileType_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnProfileType',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text16'; + +h51 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','GoTo',... +'Style','text',... +'Position',[0.604795511376553 0.801369863013698 0.0454545454545454 0.123287671232877],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text16',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnDVH'; + +h52 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Show DVH/QI',... +'Position',[0.51413881748072 0.0677966101694915 0.123393316195373 0.129943502824859],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnDVH_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnDVH',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnIsoDoseLinesLabels'; + +h53 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot isolines labels',... +'Style','radiobutton',... +'Position',[0.780445969125214 0.343557168784029 0.202401372212693 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnIsoDoseLinesLabels_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnIsoDoseLinesLabels',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'textOffset'; + +h54 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Offset',... +'Style','text',... +'Position',[0.00909090909090909 0.287104393008975 0.118181818181818 0.123287671232877],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','textOffset',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'sliderOffset'; + +h55 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','SliderOffset',... +'Style','slider',... +'Position',[0.134961439588689 0.271186440677966 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('sliderOffset_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderOffset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderOffset'); + +appdata = []; +appdata.lastValidTag = 'radioBtnIsoCenter'; + +h56 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot iso center',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.205989110707804 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radioBtnIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radioBtnIsoCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btn3Dview'; + +h57 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Open 3D-View',... +'Position',[0.595848595848596 0.578947368421053 0.148962148962149 0.157894736842105],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btn3Dview_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btn3Dview',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnCT'; + +h58 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','plot CT',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.864791288566243 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnCT_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnCT',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnPlan'; + +h59 = uicontrol(... +'Parent',h36,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','visualize plan / beams',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.78021978021978 0.0736842105263158 0.2002442002442 0.115789473684211],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnPlan_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnPlan',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uitoolbar1'; + +h60 = uitoolbar(... +'Parent',h1,... +'Tag','uitoolbar1',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Standard.FileOpen'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''toolbarLoad_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'toolbarLoad'; + +h61 = uipushtool(... +'Parent',h60,... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'Tag','toolbarLoad',... +'CData',mat{2},... +'ClickedCallback',@(hObject,eventdata)matRadGUI_export('toolbarLoad_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Open File',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Standard.SaveFigure'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''toolbarSave_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'toolbarSave'; + +h62 = uipushtool(... +'Parent',h60,... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'Tag','toolbarSave',... +'CData',mat{3},... +'ClickedCallback',@(hObject,eventdata)matRadGUI_export('toolbarSave_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Save Figure',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = []; +appdata.lastValidTag = 'uipushtool_screenshot'; + +h63 = uipushtool(... +'Parent',h60,... +'Children',[],... +'Tag','uipushtool_screenshot',... +'CData',mat{4},... +'ClickedCallback',@(hObject,eventdata)matRadGUI_export('uipushtool_screenshot_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'TooltipString','Take a screenshot of the current dose or profile plot',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.ZoomIn'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarZoomIn'; + +h64 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarZoomIn',... +'CData',mat{5},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Zoom In',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.ZoomOut'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarZoomOut'; + +h65 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarZoomOut',... +'CData',mat{6},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Zoom Out',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.Pan'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarPan'; + +h66 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarPan',... +'CData',mat{7},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Pan',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.DataCursor'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarCursor'; + +h67 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarCursor',... +'CData',mat{8},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Data Cursor',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Annotation.InsertLegend'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarLegend'; + +h68 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarLegend',... +'CData',mat{9},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Insert Legend',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Annotation.InsertColorbar'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''uitoggletool8_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'uitoggletool8'; + +h69 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','uitoggletool8',... +'CData',mat{10},... +'ClickedCallback',@(hObject,eventdata)matRadGUI_export('uitoggletool8_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Insert Colorbar',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel3'; + +h70 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title',{ 'Objectives & constraints'; ' '; ' ' },... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel3',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.257362355953905 0.430689877498388 0.259923175416133],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel4'; + +h71 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Title','Workflow',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel4',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.810499359795134 0.430045132172792 0.170294494238156],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text13'; + +h72 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Status:',... +'Style','text',... +'Position',[0.318250377073907 0.107438016528926 0.120663650075415 0.12396694214876],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text13',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtInfo'; + +h73 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','no data loaded',... +'Style','text',... +'Position',[0.414781297134238 0.0247933884297521 0.371040723981901 0.214876033057851],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtInfo',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnLoadMat'; + +h74 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Load *.mat data',... +'Position',[0.151866151866152 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnLoadMat_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnLoadMat',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnCalcDose'; + +h75 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Calc. influence Mx',... +'Position',[0.35006435006435 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnCalcDose_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnCalcDose',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnOptimize'; + +h76 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Optimize',... +'Position',[0.544401544401541 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnOptimize_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnOptimize',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnLoadDicom'; + +h77 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Load DICOM',... +'Position',[0.151866151866152 0.60126582278481 0.177606177606178 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnLoadDicom_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnLoadDicom',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRefresh'; + +h78 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Refresh',... +'Position',[0.0154440154440154 0.810126582278481 0.0849420849420849 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnRefresh_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnRefresh',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'pushbutton_recalc'; + +h79 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Recalc',... +'Position',[0.543114543114543 0.60126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('pushbutton_recalc_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','pushbutton_recalc',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSaveToGUI'; + +h80 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Save to GUI',... +'Position',[0.738738738738737 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnSaveToGUI_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnSaveToGUI',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btn_export'; + +h81 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Export',... +'Position',[0.74002574002574 0.60126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btn_export_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btn_export',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'importDoseButton'; + +h82 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Import Dose',... +'Position',[0.738738738738738 0.392405063291139 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('importDoseButton_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','importDoseButton',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'pushbutton_importFromBinary'; + +h83 = uicontrol(... +'Parent',h71,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Import from Binary',... +'Position',[0.151866151866152 0.392405063291139 0.177606177606178 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('pushbutton_importFromBinary_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'TooltipString','Imports a patient data set from binary datafiles describing CT and segmentations',... +'Tag','pushbutton_importFromBinary',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text24'; + +h84 = uicontrol(... +'Parent',h1,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','min value:',... +'Style','text',... +'Position',[0.899701069855255 0.87145643693108 0.0420862177470107 0.0253576072821847],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text24',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSetIsoDoseLevels'; + +h85 = uicontrol(... +'Parent',h1,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Set IsoDose Levels',... +'Position',[0.910792951541851 0.814995131450828 0.071035242290749 0.0223953261927945],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnSetIsoDoseLevels_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnSetIsoDoseLevels',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel10'; + +h86 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Structure Visibilty',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel10',... +'Clipping','off',... +'Position',[0.896397105097545 0.175812743823147 0.0991189427312775 0.304291287386216],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'legendTable'; + +h87 = uicontrol(... +'Parent',h86,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'Style','listbox',... +'Value',1,... +'Position',[0.02 0.01 0.97 0.98],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('legendTable_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('legendTable_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','legendTable'); + +appdata = []; +appdata.lastValidTag = 'uipanel11'; + +h88 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Viewing',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel11',... +'Clipping','off',... +'Position',[0.437782076079949 0.0460947503201025 0.451321727917473 0.842509603072983],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'axesFig'; + +h89 = axes(... +'Parent',h88,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[1 0.994838709677419 0.994838709677419],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'ColormapMode',get(0,'defaultaxesColormapMode'),... +'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... +'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... +'GridLineStyle',get(0,'defaultaxesGridLineStyle'),... +'XTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'CameraMode',get(0,'defaultaxesCameraMode'),... +'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... +'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... +'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... +'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... +'XRulerMode',get(0,'defaultaxesXRulerMode'),... +'YRulerMode',get(0,'defaultaxesYRulerMode'),... +'ZRulerMode',get(0,'defaultaxesZRulerMode'),... +'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... +'ButtonDownFcn',@(hObject,eventdata)matRadGUI_export('axesFig_ButtonDownFcn',hObject,eventdata,guidata(hObject)),... +'Tag','axesFig',... +'UserData',[],... +'Position',[0.0718390804597701 0.0354391371340524 0.902298850574712 0.929121725731895],... +'ActivePositionProperty','position',... +'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... +'LooseInset',[0.199881557553276 0.118695547917832 0.146067292058163 0.0809287826712493],... +'FontSize',9.63,... +'SortMethod','childorder',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h90 = get(h89,'title'); + +set(h90,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0 0 0],... +'ColorMode','auto',... +'Position',[0.500000554361651 1.00343482490272 0.5],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','Helvetica',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',2,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','Axes Title',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h91 = get(h89,'xlabel'); + +set(h91,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0.500000476837158 -0.0366861225689741 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h92 = get(h89,'ylabel'); + +set(h92,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[-0.0429806458688552 0.500000476837158 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','back',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','on',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +h93 = get(h89,'zlabel'); + +set(h93,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'DecorationContainer',[],... +'DecorationContainerMode','auto',... +'Color',[0.15 0.15 0.15],... +'ColorMode','auto',... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontSizeMode','auto',... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'Layer','middle',... +'LayerMode','auto',... +'FontSmoothing','on',... +'FontSmoothingMode','auto',... +'DisplayName',blanks(0),... +'IncludeRenderer','on',... +'IsContainer','off',... +'IsContainerMode','auto',... +'HelpTopicKey',blanks(0),... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible',... +'PickablePartsMode','auto',... +'DimensionNames',{ 'X' 'Y' 'Z' },... +'DimensionNamesMode','auto',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'CLimInclude','on',... +'ALimInclude','on',... +'Description','AxisRulerBase Label',... +'DescriptionMode','auto',... +'Visible','off',... +'Serializable','on',... +'HandleVisibility','off',... +'TransformForPrintFcnImplicitInvoke','on',... +'TransformForPrintFcnImplicitInvokeMode','auto'); + +appdata = []; +appdata.lastValidTag = 'uipanel12'; + +h94 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Info',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel12',... +'Clipping','off',... +'Position',[0.896276240708709 0.0448143405889885 0.0991189427312775 0.12932138284251],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnAbout'; + +h95 = uicontrol(... +'Parent',h94,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','About',... +'Position',[0.238095238095238 0.134831460674157 0.563492063492063 0.280898876404494],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI_export('btnAbout_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnAbout',... +'FontSize',7,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text15'; + +h96 = uicontrol(... +'Parent',h94,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','v3.0.0',... +'Style','text',... +'Position',[0.227106227106227 0.752808988764045 0.523809523809524 0.191011235955056],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text15',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text31'; + +h97 = uicontrol(... +'Parent',h94,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','github.com/e0404/matRad',... +'Style','text',... +'Position',[0.0384615384615385 0.528089887640449 0.942307692307693 0.168539325842697],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text31',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel_colormapOptions'; + +h98 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Viewer Options',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel_colormapOptions',... +'Clipping','off',... +'Position',[0.896397105097545 0.484330299089727 0.0991189427312775 0.318660598179457],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text_windowCenter'; + +h99 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Window Center:',... +'Style','text',... +'Position',[0.0466666666666666 0.682461750109027 0.673333333333333 0.0699999999999998],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'textDoseOpacity'; + +h100 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Dose opacity:',... +'Style','text',... +'Position',[0.0466666666666667 0.0706370831711431 0.847328244274809 0.0714285714285714],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','textDoseOpacity',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_chooseColorData'; + +h101 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'None'; 'CT (ED)'; 'Dose' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0486486486486487 0.899328859060403 0.940540540540541 0.11744966442953],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_chooseColorData_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_chooseColorData_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_chooseColorData'); + +appdata = []; +appdata.lastValidTag = 'slider_windowCenter'; + +h102 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',0.5,... +'Position',[0.0432432432432432 0.63758389261745 0.697297297297297 0.0536912751677853],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('slider_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('slider_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','slider_windowCenter'); + +appdata = []; +appdata.lastValidTag = 'text_windowWidth'; + +h103 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Window Width:',... +'Style','text',... +'Position',[0.0466666666666667 0.545761302394105 0.673333333333333 0.0700000000000001],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowWidth',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_chooseColormap'; + +h104 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Choose Colormap...',... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0362903225806452 0.278843516266481 0.939516129032258 0.0844686648501362],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_chooseColormap_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_chooseColormap_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_chooseColormap'); + +appdata = []; +appdata.lastValidTag = 'text_windowRange'; + +h105 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Range:',... +'Style','text',... +'Position',[0.0403225806451613 0.387807911050966 0.274193548387097 0.0708446866485015],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowRange',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'edit_windowRange'; + +h106 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','0 1',... +'Style','edit',... +'Position',[0.323863636363636 0.399846781328902 0.653409090909091 0.0707395498392283],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowRange_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowRange_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowRange'); + +appdata = []; +appdata.lastValidTag = 'edit_windowCenter'; + +h107 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','0.5',... +'Style','edit',... +'Value',1,... +'Position',[0.767567567567568 0.63758389261745 0.205405405405405 0.0704697986577181],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowCenter'); + +appdata = []; +appdata.lastValidTag = 'edit_windowWidth'; + +h108 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','1.0',... +'Style','edit',... +'Position',[0.772727272727273 0.518256759964609 0.204545454545455 0.0707395498392284],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowWidth'); + +appdata = []; +appdata.lastValidTag = 'sliderOpacity'; + +h109 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',0.6,... +'Position',[0.147727272727273 0.0257234726688103 0.75 0.0546623794212219],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('sliderOpacity_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderOpacity_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderOpacity'); + +appdata = []; +appdata.lastValidTag = 'txtDoseOpacity0Indicator'; + +h110 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','0',... +'Style','text',... +'Position',[0.0466666666666666 0.00599285798906697 0.0810810810810811 0.072463768115942],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','txtDoseOpacity0Indicator',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtDoseOpacity1Indicator'; + +h111 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','right',... +'String','1',... +'Style','text',... +'Position',[0.8963482566536 0.00864864051690258 0.0810810810810811 0.072463768115942],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','txtDoseOpacity1Indicator',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text_windowPreset'; + +h112 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'HorizontalAlignment','left',... +'String','Window Presets N/A',... +'Style','text',... +'Position',[0.0540540540540541 0.842281879194631 0.697297297297297 0.0704697986577181],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowPreset',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_windowPreset'; + +h113 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String',{ 'Custom'; 'Full'; 'Abd/Med'; 'Head'; 'Liver'; 'Lung'; 'Spine'; 'Vrt/Bone' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0486486486486487 0.73489932885906 0.940540540540541 0.11744966442953],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_windowPreset_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Visible','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_windowPreset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_windowPreset'); + +appdata = []; +appdata.lastValidTag = 'slider_windowWidth'; + +h114 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',1,... +'Position',[0.0454545454545455 0.51140507995425 0.698863636363636 0.0546623794212219],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI_export('slider_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('slider_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','slider_windowWidth'); + +appdata = []; +appdata.lastValidTag = 'checkbox_lockColormap'; + +h115 = uicontrol(... +'Parent',h98,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','Lock Settings',... +'Style','checkbox',... +'Position',[0.0486486486486487 0.151006711409396 0.940540540540541 0.0838926174496644],... +'BackgroundColor',[0.502 0.502 0.502],... +'Callback',@(hObject,eventdata)matRadGUI_export('checkbox_lockColormap_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','checkbox_lockColormap',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text39'; + +h116 = uicontrol(... +'Parent',h1,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','max value:',... +'Style','text',... +'Position',[0.901903713027061 0.85370611183355 0.0420862177470107 0.0245123537061118],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text39',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtMinVal'; + +h117 = uicontrol(... +'Parent',h1,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','-',... +'Style','text',... +'Position',[0.955789804908748 0.879908972691808 0.0271397105097546 0.0160598179453836],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMinVal',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtMaxVal'; + +h118 = uicontrol(... +'Parent',h1,... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Units','normalized',... +'String','-',... +'Style','text',... +'Position',[0.955789804908748 0.863003901170351 0.0271397105097546 0.0177503250975293],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMaxVal',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + + +hsingleton = h1; + + +% --- Set application data first then calling the CreateFcn. +function local_CreateFcn(hObject, eventdata, createfcn, appdata) + +if ~isempty(appdata) + names = fieldnames(appdata); + for i=1:length(names) + name = char(names(i)); + setappdata(hObject, name, getfield(appdata,name)); + end +end + +if ~isempty(createfcn) + if isa(createfcn,'function_handle') + createfcn(hObject, eventdata); + else + eval(createfcn); + end +end + + +% --- Handles default GUIDE GUI creation and callback dispatch +function varargout = gui_mainfcn(gui_State, varargin) + +gui_StateFields = {'gui_Name' + 'gui_Singleton' + 'gui_OpeningFcn' + 'gui_OutputFcn' + 'gui_LayoutFcn' + 'gui_Callback'}; +gui_Mfile = ''; +for i=1:length(gui_StateFields) + if ~isfield(gui_State, gui_StateFields{i}) + error(message('MATLAB:guide:StateFieldNotFound', gui_StateFields{ i }, gui_Mfile)); + elseif isequal(gui_StateFields{i}, 'gui_Name') + gui_Mfile = [gui_State.(gui_StateFields{i}), '.m']; + end +end + +numargin = length(varargin); + +if numargin == 0 + % MATRADGUI_EXPORT + % create the GUI only if we are not in the process of loading it + % already + gui_Create = true; +elseif local_isInvokeActiveXCallback(gui_State, varargin{:}) + % MATRADGUI_EXPORT(ACTIVEX,...) + vin{1} = gui_State.gui_Name; + vin{2} = [get(varargin{1}.Peer, 'Tag'), '_', varargin{end}]; + vin{3} = varargin{1}; + vin{4} = varargin{end-1}; + vin{5} = guidata(varargin{1}.Peer); + feval(vin{:}); + return; +elseif local_isInvokeHGCallback(gui_State, varargin{:}) + % MATRADGUI_EXPORT('CALLBACK',hObject,eventData,handles,...) + gui_Create = false; +else + % MATRADGUI_EXPORT(...) + % create the GUI and hand varargin to the openingfcn + gui_Create = true; +end + +if ~gui_Create + % In design time, we need to mark all components possibly created in + % the coming callback evaluation as non-serializable. This way, they + % will not be brought into GUIDE and not be saved in the figure file + % when running/saving the GUI from GUIDE. + designEval = false; + if (numargin>1 && ishghandle(varargin{2})) + fig = varargin{2}; + while ~isempty(fig) && ~ishghandle(fig,'figure') + fig = get(fig,'parent'); + end + + designEval = isappdata(0,'CreatingGUIDEFigure') || (isscalar(fig)&&isprop(fig,'GUIDEFigure')); + end + + if designEval + beforeChildren = findall(fig); + end + + % evaluate the callback now + varargin{1} = gui_State.gui_Callback; + if nargout + [varargout{1:nargout}] = feval(varargin{:}); + else + feval(varargin{:}); + end + + % Set serializable of objects created in the above callback to off in + % design time. Need to check whether figure handle is still valid in + % case the figure is deleted during the callback dispatching. + if designEval && ishghandle(fig) + set(setdiff(findall(fig),beforeChildren), 'Serializable','off'); + end +else + if gui_State.gui_Singleton + gui_SingletonOpt = 'reuse'; + else + gui_SingletonOpt = 'new'; + end + + % Check user passing 'visible' P/V pair first so that its value can be + % used by oepnfig to prevent flickering + gui_Visible = 'auto'; + gui_VisibleInput = ''; + for index=1:2:length(varargin) + if length(varargin) == index || ~ischar(varargin{index}) + break; + end + + % Recognize 'visible' P/V pair + len1 = min(length('visible'),length(varargin{index})); + len2 = min(length('off'),length(varargin{index+1})); + if ischar(varargin{index+1}) && strncmpi(varargin{index},'visible',len1) && len2 > 1 + if strncmpi(varargin{index+1},'off',len2) + gui_Visible = 'invisible'; + gui_VisibleInput = 'off'; + elseif strncmpi(varargin{index+1},'on',len2) + gui_Visible = 'visible'; + gui_VisibleInput = 'on'; + end + end + end + + % Open fig file with stored settings. Note: This executes all component + % specific CreateFunctions with an empty HANDLES structure. + + + % Do feval on layout code in m-file if it exists + gui_Exported = ~isempty(gui_State.gui_LayoutFcn); + % this application data is used to indicate the running mode of a GUIDE + % GUI to distinguish it from the design mode of the GUI in GUIDE. it is + % only used by actxproxy at this time. + setappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name]),1); + if gui_Exported + gui_hFigure = feval(gui_State.gui_LayoutFcn, gui_SingletonOpt); + + % make figure invisible here so that the visibility of figure is + % consistent in OpeningFcn in the exported GUI case + if isempty(gui_VisibleInput) + gui_VisibleInput = get(gui_hFigure,'Visible'); + end + set(gui_hFigure,'Visible','off') + + % openfig (called by local_openfig below) does this for guis without + % the LayoutFcn. Be sure to do it here so guis show up on screen. + movegui(gui_hFigure,'onscreen'); + else + gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); + % If the figure has InGUIInitialization it was not completely created + % on the last pass. Delete this handle and try again. + if isappdata(gui_hFigure, 'InGUIInitialization') + delete(gui_hFigure); + gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); + end + end + if isappdata(0, genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])) + rmappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])); + end + + % Set flag to indicate starting GUI initialization + setappdata(gui_hFigure,'InGUIInitialization',1); + + % Fetch GUIDE Application options + gui_Options = getappdata(gui_hFigure,'GUIDEOptions'); + % Singleton setting in the GUI MATLAB code file takes priority if different + gui_Options.singleton = gui_State.gui_Singleton; + + if ~isappdata(gui_hFigure,'GUIOnScreen') + % Adjust background color + if gui_Options.syscolorfig + set(gui_hFigure,'Color', get(0,'DefaultUicontrolBackgroundColor')); + end + + % Generate HANDLES structure and store with GUIDATA. If there is + % user set GUI data already, keep that also. + data = guidata(gui_hFigure); + handles = guihandles(gui_hFigure); + if ~isempty(handles) + if isempty(data) + data = handles; + else + names = fieldnames(handles); + for k=1:length(names) + data.(char(names(k)))=handles.(char(names(k))); + end + end + end + guidata(gui_hFigure, data); + end + + % Apply input P/V pairs other than 'visible' + for index=1:2:length(varargin) + if length(varargin) == index || ~ischar(varargin{index}) + break; + end + + len1 = min(length('visible'),length(varargin{index})); + if ~strncmpi(varargin{index},'visible',len1) + try set(gui_hFigure, varargin{index}, varargin{index+1}), catch break, end + end + end + + % If handle visibility is set to 'callback', turn it on until finished + % with OpeningFcn + gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); + if strcmp(gui_HandleVisibility, 'callback') + set(gui_hFigure,'HandleVisibility', 'on'); + end + + feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:}); + + if isscalar(gui_hFigure) && ishghandle(gui_hFigure) + % Handle the default callbacks of predefined toolbar tools in this + % GUI, if any + guidemfile('restoreToolbarToolPredefinedCallback',gui_hFigure); + + % Update handle visibility + set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); + + % Call openfig again to pick up the saved visibility or apply the + % one passed in from the P/V pairs + if ~gui_Exported + gui_hFigure = local_openfig(gui_State.gui_Name, 'reuse',gui_Visible); + elseif ~isempty(gui_VisibleInput) + set(gui_hFigure,'Visible',gui_VisibleInput); + end + if strcmpi(get(gui_hFigure, 'Visible'), 'on') + figure(gui_hFigure); + + if gui_Options.singleton + setappdata(gui_hFigure,'GUIOnScreen', 1); + end + end + + % Done with GUI initialization + if isappdata(gui_hFigure,'InGUIInitialization') + rmappdata(gui_hFigure,'InGUIInitialization'); + end + + % If handle visibility is set to 'callback', turn it on until + % finished with OutputFcn + gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); + if strcmp(gui_HandleVisibility, 'callback') + set(gui_hFigure,'HandleVisibility', 'on'); + end + gui_Handles = guidata(gui_hFigure); + else + gui_Handles = []; + end + + if nargout + [varargout{1:nargout}] = feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); + else + feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); + end + + if isscalar(gui_hFigure) && ishghandle(gui_hFigure) + set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); + end +end + +function gui_hFigure = local_openfig(name, singleton, visible) + +% openfig with three arguments was new from R13. Try to call that first, if +% failed, try the old openfig. +if nargin('openfig') == 2 + % OPENFIG did not accept 3rd input argument until R13, + % toggle default figure visible to prevent the figure + % from showing up too soon. + gui_OldDefaultVisible = get(0,'defaultFigureVisible'); + set(0,'defaultFigureVisible','off'); + gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton); + set(0,'defaultFigureVisible',gui_OldDefaultVisible); +else + % Call version of openfig that accepts 'auto' option" + gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton, visible); +% %workaround for CreateFcn not called to create ActiveX +% peers=findobj(findall(allchild(gui_hFigure)),'type','uicontrol','style','text'); +% for i=1:length(peers) +% if isappdata(peers(i),'Control') +% actxproxy(peers(i)); +% end +% end +end + +function result = local_isInvokeActiveXCallback(gui_State, varargin) + +try + result = ispc && iscom(varargin{1}) ... + && isequal(varargin{1},gcbo); +catch + result = false; +end + +function result = local_isInvokeHGCallback(gui_State, varargin) + +try + fhandle = functions(gui_State.gui_Callback); + result = ~isempty(findstr(gui_State.gui_Name,fhandle.file)) || ... + (ischar(varargin{1}) ... + && isequal(ishghandle(varargin{2}), 1) ... + && (~isempty(strfind(varargin{1},[get(varargin{2}, 'Tag'), '_'])) || ... + ~isempty(strfind(varargin{1}, '_CreateFcn'))) ); +catch + result = false; +end + + diff --git a/matRadGUI_export.mat b/matRadGUI_export.mat new file mode 100644 index 0000000000000000000000000000000000000000..0bfd94999f28558ea5f10d178a7467a1b68e2862 GIT binary patch literal 7550 zcma)gc|6o_^sl9;ZzNHcgi=Jwp4}uBLiT+bOURZiV>go&vQ3hmB>P?>yCM5J)G%cm zk##T_voD|9{oU7n-GA@-<2lbC=XGA^Jm-C$vzX{w8SCB?SGg@OZlY@?>*eF`c}v{P z-!0TDFgQR%+)U5b@bMkxTjF}bo^GL@Ps9VCX^1}z_7OL6ixgK>7FSfzkiVm$q%N)~ zub?je|4A(Wmskx=c>djqA}lNsg($l{Q;`RPV3*|PFQ-_?jN*pKGiACo_gcwJ;ZlW} zvM=?G*Cv<0^d@vKVE05tTV@-f&BCR+9*o^qwwAjEcBL>DYZ-or<@Jc0s9$y;Wg#Eh 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zmRL!I0|^^gV9XXmTd-B~L`+?3W~|ySIMy=(`*}HOd`V?o-pB1)%U-Ohzt?9`monBl zeZF`K#*-Dmg9%18&=vrnmWl@2#yS2l2sd-FL&OwtI(!WA$?O^V8Dgig8G!8BG8CD? zU9$spGSPMiJqdHB)eA_Ui(y)8&SEH~Odt-U1$j3Syk;wZJ3O&5GVvVPY9kP*>rV_9ti7$jh*oR0!?O zXyXE4!d!OZ$-Pn3Xf%rp2hJ=2x(i|upkN5JLmXFozvGw7MUc!(9mXw>u|K(-d0k_~ z_42WOFF+S)+zABt=Q6@BTM|`?yr+7Y*E~Uo*qpT`n~Gq>E)2@R{7-MPn``37XU?A> z@##jAm09YQwqWT7`opLbInK!iKZ;i#)>PaH(BH1OZGFGGBlQgL;s8I&%R+V4;`tTx z6NVljV=uOH2cJxA^lG8>iG@%y zDXvK!6UWr3t9bvML~?wtHdE@`V36>pTnZPp^EYHV)U`+ai5rz#y&YH&e__9ibK7eQ zWuufHKK6rKfY}t04_y$5Gj}J9(>)&VOVw zh<*s7K8{CoP>%NY*v%V7g9ScG3w@Z$Q?zO5<~J<7aL*sxi1`XXqGewW}TY&pT<~TqDz-g^&nf|9~ zs)2-;AqY=IB5*g~G4wX?zMg}H$eL4i|GPE41FhJl0S{;`h#Us&e_*%JEpTFa9yg@B zF!+n*&m|fLq`OicOE?Y|k9h`IpEyxGpTi&D>rvR8EOKh`tLhn*liw?!L)R7^#0LW8 Z>h~&Dxxd0b`f$jT<=uT)e(evO`Crfu@iPDb literal 0 HcmV?d00001 From 65a91caa9344c206427b4cbda965a8cb91804e70 Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Tue, 4 Jun 2019 12:50:54 +0200 Subject: [PATCH 02/87] script to remove unnecessary options for graphics options --- tools/matRad_fixExportedGUI.m | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 tools/matRad_fixExportedGUI.m diff --git a/tools/matRad_fixExportedGUI.m b/tools/matRad_fixExportedGUI.m new file mode 100644 index 000000000..8d5cddbdd --- /dev/null +++ b/tools/matRad_fixExportedGUI.m @@ -0,0 +1,39 @@ +fid = fopen('matRadGUI_export.m','r'); +f=fread(fid,'*char')'; +fclose(fid); + + +f = regexprep(f,'\n''Alphamap'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); +f = regexprep(f,'\n''DecorationContainer'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); +f = regexprep(f,'\n''Layer'',''(back|middle|front)''(,\.\.\.|\))',''); +f = regexprep(f,'\n''DisplayName'',blanks\(0\)(,\.\.\.|\))',''); +f = regexprep(f,'\n''HelpTopicKey'',blanks\(0\)(,\.\.\.|\))',''); +f = regexprep(f,'\n''DimensionNames'',{[\s\w'']*?}(,\.\.\.|\))',''); +f = regexprep(f,'\n''Description'',''[\w\s]*?''(,\.\.\.|\))',''); + +%On/Off properties +expr = {'FontSmoothing','CLimInclude','ALimInclude','IncludeRenderer','IsContainer','IsContainer','Serializable','TransformForPrintFcnImplicitInvoke'}; +expr = strjoin(expr,'|'); +expr = ['\n''(' expr ')'',''(on|off)''(,\.\.\.|\))']; +f = regexprep(f,expr,''); +edit +%Mode sets +modestrings = {'ScreenPixelsPerInch','DecorationContainer','Color','FontSize','Layer','FontSmoothing','IsContainer','PickableParts','DimensionNames','Description','TransformForPrintFcnImplicitInvoke'}; +modestrings = strjoin(modestrings,'|'); +expr = ['\n''(' modestrings ')Mode'',''\w*?''(,\.\.\.|\))']; +f = regexprep(f,expr,''); + + +%Mode gets +modestrings = {'Colormap','Alphamap','Camera','DataSpace','ColorSpace','DecorationContainer','ChildContainer','XRuler','YRuler','ZRuler','AmbientLightSource','ActivePositionProperty'}; +modestrings = strjoin(modestrings,'|'); +expr = ['\n''(' modestrings ')Mode'',get\(0,''defaultaxes(' modestrings ')Mode''\)(,\.\.\.|\))']; +f = regexprep(f,expr,''); + +%Fix whitespaces +f = regexprep(f,'(,\.\.\.)\s*?;',');'); + + +fid = fopen('matRadGUI_export2.m','w'); +fprintf(fid,'%s',f); +fclose(fid); \ No newline at end of file From ecbcbc1be95146bbac3fec62c0381d0466d9bbf0 Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Wed, 12 Jun 2019 23:28:26 +0200 Subject: [PATCH 03/87] fides to the exported GUI --- matRadGUI_export.m | 396 +++++----------------------------- tools/matRad_fixExportedGUI.m | 46 ++-- 2 files changed, 82 insertions(+), 360 deletions(-) diff --git a/matRadGUI_export.m b/matRadGUI_export.m index 13149e2f2..a97510e6d 100644 --- a/matRadGUI_export.m +++ b/matRadGUI_export.m @@ -47,8 +47,8 @@ case 'MATLAB' case 'OCTAVE' - fprintf(['matRad GUI not available for ' env ' ' versionString ' \n']); - return; + fprintf(['matRad GUI not fully supported for ' env ' ' versionString ' \n']); + otherwise fprintf(['not yet tested']); end @@ -62,7 +62,7 @@ elseif ismac lf = 'com.apple.laf.AquaLookAndFeel'; end -javax.swing.UIManager.setLookAndFeel(lf); +try, javax.swing.UIManager.setLookAndFeel(lf);, catch, fprintf('javax not supported\n'), end gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... @@ -84,9 +84,9 @@ % End initialization code - DO NOT EDIT function handles = resetGUI(hObject, handles, varargin) -% enable opengl software rendering to visualize linewidths properly +% enable try, opengl software, catch, fprintf('opengl not supported\n'), end rendering to visualize linewidths properly if ispc - opengl software + try, opengl software, catch, fprintf('opengl not supported\n'), end elseif ismac % opengl is not supported end @@ -95,19 +95,20 @@ handles.output = hObject; %show matrad logo axes(handles.axesLogo) -[im, ~, alpha] = imread('matrad_logo.png'); +[im, ~, alpha] = imread('gui/matrad_logo.png'); f = image(im); axis equal off set(f, 'AlphaData', alpha); % show dkfz logo axes(handles.axesDKFZ) -[im, ~, alpha] = imread('DKFZ_Logo.png'); +[im, ~, alpha] = imread('gui/DKFZ_Logo.png'); f = image(im); axis equal off; set(f, 'AlphaData', alpha); % turn off the datacursormode (since it does not allow to set scrolling % callbacks +try handles.dcm_obj = datacursormode(handles.figure1); set(handles.dcm_obj,'DisplayStyle','window'); if strcmpi(get(handles.dcm_obj,'Enable'),'on') @@ -115,11 +116,13 @@ end %Add the callback for the datacursor display set(handles.dcm_obj,'UpdateFcn',@dataCursorUpdateFunction); - +catch +end % set callback for scroll wheel function set(gcf,'WindowScrollWheelFcn',@matRadScrollWheelFcn); % change color of toobar but only the first time GUI is started +try if handles.initialGuiStart hToolbar = findall(hObject,'tag','uitoolbar1'); jToolbar = get(get(hToolbar,'JavaContainer'),'ComponentPeer'); @@ -140,6 +143,8 @@ end end end +catch +end set(handles.legendTable,'String',{'no data loaded'}); @@ -388,8 +393,8 @@ function matRadGUI_export_OpeningFcn(hObject, ~, handles, varargin) elseif ~ismember('ct',AllVarNames) && ismember('cst',AllVarNames) handles = showError(handles,'GUI OpeningFunc: could not find ct file'); end -catch - handles = showError(handles,'GUI OpeningFunc: Could not load ct and cst file'); +catch MEexception + handles = showError(handles,['GUI OpeningFunc: Could not load ct and cst file: ' MEexception.message]); end if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) @@ -830,9 +835,9 @@ function UpdatePlot(handles) defaultFontSize = 8; currAxes = axis(handles.axesFig); -AxesHandlesCT_Dose = gobjects(0); +AxesHandlesCT_Dose = [];%gobjects(0); AxesHandlesVOI = cell(0); -AxesHandlesIsoDose = gobjects(0); +AxesHandlesIsoDose = [];%gobjects(0); if handles.State == 0 cla reset @@ -4154,7 +4159,13 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) cstPanel = handles.uipanel3; -cstPanelPos = getpixelposition(cstPanel); +try + cstPanelPos = getpixelposition(cstPanel); +catch + set(cstPanel,'Units','pixels'); + cstPanelPos = get(cstPanel,'Position'); + set(cstPanel,'Units','normalized'); +end %Parameters for line height objHeight = 22; @@ -4175,7 +4186,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) %Scrollbar -cstVertTableScroll = findobj(cstPanel.Children,'Style','slider'); +cstVertTableScroll = findobj(get(cstPanel,'Children'),'Style','slider'); if isempty(cstVertTableScroll) sliderPos = 0; else @@ -4184,7 +4195,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) %disp(num2str(sliderPos)); ypos = @(c) tableViewHeight - c*lineHeight + sliderPos; -delete(cstPanel.Children); +delete(get(cstPanel,'Children')); %Creates a dummy axis to allow for the use of textboxes instead of uicontrol to be able to use the (la)tex interpreter tmpAxes = axes('Parent',cstPanel,'units','normalized','position',[0 0 1 1],'visible','off'); @@ -4192,7 +4203,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) organTypes = {'OAR', 'TARGET'}; %columnname = {'VOI name','VOI type','priority','obj. / const.'};%,'penalty','dose', 'EUD','volume','robustness'}; - +try %Get all Classes & classNames mpkgObjectives = meta.package.fromName('DoseObjectives'); mpkgConstraints = meta.package.fromName('DoseConstraints'); @@ -4336,7 +4347,9 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) uicontrol(cstPanel,'Style','slider','Units','normalized','Position',[0.975 0 0.025 1],'Min',0,'Max',ceil(sliderFac)*tableViewHeight,'SliderStep',[lineHeight tableViewHeight] ./ (ceil(sliderFac)*tableViewHeight),'Value',ceil(sliderFac)*tableViewHeight - sliderPos,'Callback',{@cstTableSlider_Callback,handles}); end - +catch + +end %set(handles.uiTable,'ColumnName',columnname); @@ -4604,7 +4617,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'PaperSize',[20.99999864 29.69999902],... 'PaperType',get(0,'defaultfigurePaperType'),... 'InvertHardcopy',get(0,'defaultfigureInvertHardcopy'),... -'ScreenPixelsPerInchMode','manual',... 'HandleVisibility','callback',... 'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); @@ -4625,9 +4637,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... 'FontName','CMU Serif',... 'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... 'XTick',[0 0.2 0.4 0.6 0.8 1],... 'XTickMode',get(0,'defaultaxesXTickMode'),... 'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... @@ -4637,19 +4646,9 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'YTickLabel',{ '0'; '0.5'; '1' },... 'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... 'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... 'Tag','axesLogo',... 'Position',[0.444874274661509 0.893725992317542 0.184397163120567 0.0998719590268886],... 'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... 'LooseInset',[0.182759687929063 0.112926163636008 0.133555156563546 0.0769951115700055],... 'FontSize',9.63,... 'SortMethod','childorder',... @@ -4661,10 +4660,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h2,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0 0 0],... -'ColorMode','auto',... 'Position',[0.500002778623327 1.02596323529412 0.5],... 'PositionMode','auto',... 'String',blanks(0),... @@ -4673,7 +4669,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','bold',... 'HorizontalAlignment','center',... @@ -4686,15 +4681,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -4703,21 +4689,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h4 = get(h2,'xlabel'); @@ -4725,10 +4701,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h2,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0.500000476837158 -0.277303926477245 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -4737,7 +4710,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -4750,15 +4722,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -4767,21 +4730,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h5 = get(h2,'ylabel'); @@ -4789,10 +4742,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h2,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[-0.0943626077857305 0.500000476837158 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -4801,7 +4751,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -4814,15 +4763,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -4831,21 +4771,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h6 = get(h2,'zlabel'); @@ -4853,10 +4783,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h2,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0 0 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -4865,7 +4792,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','left',... @@ -4878,15 +4804,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -4895,21 +4812,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); appdata = []; appdata.lastValidTag = 'axesDKFZ'; @@ -4928,9 +4835,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... 'FontName','CMU Serif',... 'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... 'XTick',[0 0.2 0.4 0.6 0.8 1],... 'XTickMode',get(0,'defaultaxesXTickMode'),... 'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... @@ -4940,19 +4844,9 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'YTickLabel',{ '0'; '0.5'; '1' },... 'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... 'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... 'Tag','axesDKFZ',... 'Position',[0.652482269503546 0.903969270166453 0.259187620889749 0.0717029449423816],... 'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... 'LooseInset',[0.13 0.11 0.0950000000000001 0.0749999999999999],... 'FontSize',9.63,... 'SortMethod','childorder',... @@ -4964,10 +4858,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h7,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0 0 0],... -'ColorMode','auto',... 'Position',[0.500002880250254 1.03678125 0.500000000000007],... 'PositionMode','auto',... 'String',blanks(0),... @@ -4976,7 +4867,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','bold',... 'HorizontalAlignment','center',... @@ -4989,15 +4879,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -5006,21 +4887,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h9 = get(h7,'xlabel'); @@ -5028,10 +4899,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h7,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0.500000476837158 -0.392847229176095 7.105427357601e-15],... 'PositionMode','auto',... 'String',blanks(0),... @@ -5040,7 +4908,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -5053,15 +4920,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -5070,21 +4928,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h10 = get(h7,'ylabel'); @@ -5092,10 +4940,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h7,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[-0.0671572591700866 0.50000047683716 7.105427357601e-15],... 'PositionMode','auto',... 'String',blanks(0),... @@ -5104,7 +4949,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -5117,15 +4961,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -5134,21 +4969,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h11 = get(h7,'zlabel'); @@ -5156,10 +4981,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h7,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0 0 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -5168,7 +4990,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','left',... @@ -5181,15 +5002,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -5198,21 +5010,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); appdata = []; appdata.lastValidTag = 'uipanel1'; @@ -5624,7 +5426,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'FontUnits',get(0,'defaultuipanelFontUnits'),... 'Units',get(0,'defaultuipanelUnits'),... 'ShadowColor',get(0,'defaultuipanelShadowColor'),... -'Title',{ 'Visualization'; ' ' },... +'Title',strtrim(strjoin({ 'Visualization'; ' ' })),... 'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... 'Tag','uipanel2',... 'UserData',[],... @@ -6181,7 +5983,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'FontUnits',get(0,'defaultuipanelFontUnits'),... 'Units',get(0,'defaultuipanelUnits'),... 'ShadowColor',get(0,'defaultuipanelShadowColor'),... -'Title',{ 'Objectives & constraints'; ' '; ' ' },... +'Title',strtrim(strjoin({ 'Objectives & constraints'; ' '; ' ' })),... 'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... 'Tag','uipanel3',... 'UserData',[],... @@ -6497,9 +6299,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... 'FontName','CMU Serif',... 'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... 'GridLineStyle',get(0,'defaultaxesGridLineStyle'),... 'XTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... 'XTickMode',get(0,'defaultaxesXTickMode'),... @@ -6510,21 +6309,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'YTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... 'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... 'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... 'ButtonDownFcn',@(hObject,eventdata)matRadGUI_export('axesFig_ButtonDownFcn',hObject,eventdata,guidata(hObject)),... 'Tag','axesFig',... 'UserData',[],... 'Position',[0.0718390804597701 0.0354391371340524 0.902298850574712 0.929121725731895],... 'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... 'LooseInset',[0.199881557553276 0.118695547917832 0.146067292058163 0.0809287826712493],... 'FontSize',9.63,... 'SortMethod','childorder',... @@ -6536,10 +6325,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h89,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0 0 0],... -'ColorMode','auto',... 'Position',[0.500000554361651 1.00343482490272 0.5],... 'PositionMode','auto',... 'String',blanks(0),... @@ -6548,7 +6334,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','Helvetica',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -6561,15 +6346,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',2,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -6578,21 +6354,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h91 = get(h89,'xlabel'); @@ -6600,10 +6366,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h89,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0.500000476837158 -0.0366861225689741 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -6612,7 +6375,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -6625,15 +6387,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -6642,21 +6395,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h92 = get(h89,'ylabel'); @@ -6664,10 +6407,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h89,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[-0.0429806458688552 0.500000476837158 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -6676,7 +6416,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10.593,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','center',... @@ -6689,15 +6428,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -6706,21 +6436,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); h93 = get(h89,'zlabel'); @@ -6728,10 +6448,7 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Parent',h89,... 'Units','data',... 'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... 'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... 'Position',[0 0 0],... 'PositionMode','auto',... 'String',blanks(0),... @@ -6740,7 +6457,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'RotationMode','auto',... 'FontName','CMU Serif',... 'FontSize',10,... -'FontSizeMode','auto',... 'FontAngle','normal',... 'FontWeight','normal',... 'HorizontalAlignment','left',... @@ -6753,15 +6469,6 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'BackgroundColor','none',... 'Margin',3,... 'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... 'ButtonDownFcn',blanks(0),... 'BusyAction','queue',... 'Interruptible','on',... @@ -6770,21 +6477,11 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) 'Tag',blanks(0),... 'HitTest','on',... 'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... 'XLimInclude','on',... 'YLimInclude','on',... 'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... 'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); +'HandleVisibility','off'); appdata = []; appdata.lastValidTag = 'uipanel12'; @@ -7353,7 +7050,7 @@ function local_CreateFcn(hObject, eventdata, createfcn, appdata) % openfig (called by local_openfig below) does this for guis without % the LayoutFcn. Be sure to do it here so guis show up on screen. - movegui(gui_hFigure,'onscreen'); + try, movegui(gui_hFigure,'onscreen');, catch, fprintf('movegui not supported\n'), end else gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); % If the figure has InGUIInitialization it was not completely created @@ -7422,7 +7119,10 @@ try set(gui_hFigure, varargin{index}, varargin{index+1}), catch break, end if isscalar(gui_hFigure) && ishghandle(gui_hFigure) % Handle the default callbacks of predefined toolbar tools in this % GUI, if any + try guidemfile('restoreToolbarToolPredefinedCallback',gui_hFigure); + catch + end % Update handle visibility set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); diff --git a/tools/matRad_fixExportedGUI.m b/tools/matRad_fixExportedGUI.m index 8d5cddbdd..9e56c30d8 100644 --- a/tools/matRad_fixExportedGUI.m +++ b/tools/matRad_fixExportedGUI.m @@ -2,37 +2,59 @@ f=fread(fid,'*char')'; fclose(fid); - -f = regexprep(f,'\n''Alphamap'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); -f = regexprep(f,'\n''DecorationContainer'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); -f = regexprep(f,'\n''Layer'',''(back|middle|front)''(,\.\.\.|\))',''); -f = regexprep(f,'\n''DisplayName'',blanks\(0\)(,\.\.\.|\))',''); -f = regexprep(f,'\n''HelpTopicKey'',blanks\(0\)(,\.\.\.|\))',''); -f = regexprep(f,'\n''DimensionNames'',{[\s\w'']*?}(,\.\.\.|\))',''); -f = regexprep(f,'\n''Description'',''[\w\s]*?''(,\.\.\.|\))',''); +if ispc + nl = '\r\n';%newline; +else + nl = '\n'; +end + +f = regexprep(f,[nl '''Alphamap'',\[[\s.;0-9]*?\](,\.\.\.|\))'],''); +f = regexprep(f,[nl '''DecorationContainer'',\[[\s.;0-9]*?\](,\.\.\.|\))'],''); +f = regexprep(f,[nl '''Layer'',''(back|middle|front)''(,\.\.\.|\))'],''); +f = regexprep(f,[nl '''DisplayName'',blanks\(0\)(,\.\.\.|\))'],''); +f = regexprep(f,[nl '''HelpTopicKey'',blanks\(0\)(,\.\.\.|\))'],''); +f = regexprep(f,[nl '''DimensionNames'',{[\s\w'']*?}(,\.\.\.|\))'],''); +f = regexprep(f,[nl '''Description'',''[\w\s]*?''(,\.\.\.|\))'],''); %On/Off properties expr = {'FontSmoothing','CLimInclude','ALimInclude','IncludeRenderer','IsContainer','IsContainer','Serializable','TransformForPrintFcnImplicitInvoke'}; expr = strjoin(expr,'|'); -expr = ['\n''(' expr ')'',''(on|off)''(,\.\.\.|\))']; +expr = [nl '''(' expr ')'',''(on|off)''(,\.\.\.|\))']; f = regexprep(f,expr,''); -edit + %Mode sets modestrings = {'ScreenPixelsPerInch','DecorationContainer','Color','FontSize','Layer','FontSmoothing','IsContainer','PickableParts','DimensionNames','Description','TransformForPrintFcnImplicitInvoke'}; modestrings = strjoin(modestrings,'|'); -expr = ['\n''(' modestrings ')Mode'',''\w*?''(,\.\.\.|\))']; +expr = [nl '''(' modestrings ')Mode'',''\w*?''(,\.\.\.|\))']; f = regexprep(f,expr,''); %Mode gets modestrings = {'Colormap','Alphamap','Camera','DataSpace','ColorSpace','DecorationContainer','ChildContainer','XRuler','YRuler','ZRuler','AmbientLightSource','ActivePositionProperty'}; modestrings = strjoin(modestrings,'|'); -expr = ['\n''(' modestrings ')Mode'',get\(0,''defaultaxes(' modestrings ')Mode''\)(,\.\.\.|\))']; +expr = [nl '''(' modestrings ')Mode'',get\(0,''defaultaxes(' modestrings ')Mode''\)(,\.\.\.|\))']; f = regexprep(f,expr,''); %Fix whitespaces f = regexprep(f,'(,\.\.\.)\s*?;',');'); +%Disable compability error +f = regexprep(f,'(matRad GUI not available for)(.*?)(return;)','matRad GUI not fully supported for$2'); + +%Fix Javax +f = regexprep(f,'(javax\.swing\.UIManager\.setLookAndFeel\(lf\);)','try, $1, catch, fprintf(''javax not supported\\n''), end'); + +%Fix Movegui +f = regexprep(f,'(movegui\(gui_hFigure,''onscreen''\);)','try, $1, catch, fprintf(''movegui not supported\\n''), end'); + +%Fix OpenGL +f = regexprep(f,'(opengl software)','try, $1, catch, fprintf(''opengl not supported\\n''), end'); + +%Fix Logos +f = regexprep(f,'(matrad\_logo\.png|DKFZ\_Logo\.png)','gui/$1'); + +%Fix cell array titles +f = regexprep(f,'(''Title'',)({.*?})','$1strtrim(strjoin($2))'); fid = fopen('matRadGUI_export2.m','w'); fprintf(fid,'%s',f); From df2ca61b9dfe6d3c72020b6b2481bdeb90ca52f6 Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Thu, 8 Aug 2019 12:10:56 +0200 Subject: [PATCH 04/87] octave compatible dicom import --- .../matRad_checkEnvDicomRequirements.m | 42 +++++++++++++++++++ dicomImport/matRad_createCst.m | 11 ++--- dicomImport/matRad_importDicom.m | 13 ++++-- dicomImport/matRad_importDicomCt.m | 20 +++++++-- dicomImport/matRad_importDicomRTPlan.m | 7 +++- dicomImport/matRad_importDicomRtss.m | 7 +++- .../matRad_importDicomSteeringParticles.m | 6 ++- dicomImport/matRad_interpDicomDoseCube.m | 8 +++- dicomImport/matRad_scanDicomImportFolder.m | 12 ++++-- 9 files changed, 104 insertions(+), 22 deletions(-) create mode 100644 dicomImport/matRad_checkEnvDicomRequirements.m diff --git a/dicomImport/matRad_checkEnvDicomRequirements.m b/dicomImport/matRad_checkEnvDicomRequirements.m new file mode 100644 index 000000000..9f30ea75a --- /dev/null +++ b/dicomImport/matRad_checkEnvDicomRequirements.m @@ -0,0 +1,42 @@ +function matRad_checkEnvDicomRequirements(env) +% matRad function to check if requirements for dicom import / export are +% given. Throws an error if requirements not met +% +% call +% matRad_checkEnvDicomRequirements(env) +% +% input +% env: folder to be scanned +% +% References +% - +% +% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% +% +% Copyright 2015 the matRad development team. +% +% This file is part of the matRad project. It is subject to the license +% terms in the LICENSE file found in the top-level directory of this +% distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part +% of the matRad project, including this file, may be copied, modified, +% propagated, or distributed except according to the terms contained in the +% LICENSE file. +% +% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + + +if strcmp(env,'OCTAVE') + try + pkg load dicom; + pkg load image; + catch + error('Octave needs dicom and image packages from Octave Forge for dicom import!'); + end +else + if ~license('checkout','image_toolbox') + error('image processing toolbox and/or corresponding licence not available'); + end +end + +end + diff --git a/dicomImport/matRad_createCst.m b/dicomImport/matRad_createCst.m index 0495ebafe..70b988407 100755 --- a/dicomImport/matRad_createCst.m +++ b/dicomImport/matRad_createCst.m @@ -47,12 +47,9 @@ cst{i,5}.Priority = 1; % default objectives for targets - cst{i,6}(1).type = 'square deviation'; - cst{i,6}(1).penalty = 800; - cst{i,6}(1).dose = 30; - cst{i,6}(1).EUD = NaN; - cst{i,6}(1).volume = NaN; - cst{i,6}(1).robustness = 'none'; + cst{i,6}{1}.type = 'DoseObjectives.matRad_SquaredDeviation'; + cst{i,6}{1}.penalty = 800; + cst{i,6}{1}.parameters{1} = 60; else @@ -60,7 +57,7 @@ cst{i,5}.Priority = 2; - cst{i,6} = []; % define no OAR dummy objcetives + %cst{i,6} = []; % define no OAR dummy objcetives end diff --git a/dicomImport/matRad_importDicom.m b/dicomImport/matRad_importDicom.m index 390264ded..ecf4c4cea 100755 --- a/dicomImport/matRad_importDicom.m +++ b/dicomImport/matRad_importDicom.m @@ -33,7 +33,12 @@ % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -[env, ~] = matRad_getEnvironment(); +env = matRad_getEnvironment(); + +matRad_checkEnvDicomRequirements(env); + +isOctave = strcmp(env,'OCTAVE'); + %% if ~exist('dicomMetaBool','var') @@ -52,7 +57,7 @@ resolution.z = files.resz; % [mm] / lps coordinate system if files.useDoseGrid && isfield(files,'rtdose') % get grid from dose cube - if verLessThan('matlab','9') + if isOctave || verLessThan('matlab','9') doseInfo = dicominfo(files.rtdose{1,1}); else doseInfo = dicominfo(files.rtdose{1,1},'UseDictionaryVR',true); @@ -158,9 +163,11 @@ switch env case 'MATLAB' clearvars -except ct cst pln stf resultGUI FileName PathName; + save([PathName, FileName], '-regexp', '^(?!(FileName|PathName)$).','-v7'); case 'OCTAVE' clear -x ct cst pln stf resultGUI FileName PathName; + save([PathName, FileName],'-v6'); end % save all except FileName and PathName - save([PathName, FileName], '-regexp', '^(?!(FileName|PathName)$).','-v7.3'); + end diff --git a/dicomImport/matRad_importDicomCt.m b/dicomImport/matRad_importDicomCt.m index 70ee882d4..412f1d1da 100755 --- a/dicomImport/matRad_importDicomCt.m +++ b/dicomImport/matRad_importDicomCt.m @@ -41,12 +41,19 @@ visBool = 0; end +env = matRad_getEnvironment(); + +matRad_checkEnvDicomRequirements(env); + +isOctave = strcmp(env,'OCTAVE'); + + % creation of ctInfo list numOfSlices = size(ctList,1); fprintf('\ncreating info...') for i = 1:numOfSlices - if verLessThan('matlab','9') + if isOctave ||verLessThan('matlab','9') tmpDicomInfo = dicominfo(ctList{i,1}); else tmpDicomInfo = dicominfo(ctList{i,1},'UseDictionaryVR',true); @@ -61,8 +68,8 @@ ctInfo(i).PatientPosition = tmpDicomInfo.PatientPosition; ctInfo(i).Rows = tmpDicomInfo.Rows; ctInfo(i).Columns = tmpDicomInfo.Columns; - ctInfo(i).Width = tmpDicomInfo.Width; - ctInfo(i).Height = tmpDicomInfo.Height; + ctInfo(i).Width = tmpDicomInfo.Columns;%tmpDicomInfo.Width; + ctInfo(i).Height = tmpDicomInfo.Rows;%tmpDicomInfo.Height; ctInfo(i).RescaleSlope = tmpDicomInfo.RescaleSlope; ctInfo(i).RescaleIntercept = tmpDicomInfo.RescaleIntercept; @@ -125,7 +132,12 @@ origCt = zeros(ctInfo(1).Height, ctInfo(1).Width, numOfSlices); for i = 1:numOfSlices currentFilename = ctList{i}; - [currentImage, map] = dicomread(currentFilename); + if isOctave + currentImage = dicomread(currentFilename); + map = []; + else + [currentImage, map] = dicomread(currentFilename); + end origCt(:,:,i) = currentImage(:,:); % creation of the ct cube % draw current ct-slice diff --git a/dicomImport/matRad_importDicomRTPlan.m b/dicomImport/matRad_importDicomRTPlan.m index 2c4377608..5187c1262 100644 --- a/dicomImport/matRad_importDicomRTPlan.m +++ b/dicomImport/matRad_importDicomRTPlan.m @@ -29,6 +29,11 @@ % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +env = matRad_getEnvironment(); +matRad_checkEnvDicomRequirements(env); +isOctave = strcmp(env,'OCTAVE'); + %% load plan file % check size of RT Plan if size(rtPlanFiles,1) ~= 1 @@ -36,7 +41,7 @@ end % read information out of the RT file -if verLessThan('matlab','9') +if isOctave || verLessThan('matlab','9') planInfo = dicominfo(rtPlanFiles{1}); else planInfo = dicominfo(rtPlanFiles{1},'UseDictionaryVR',true); diff --git a/dicomImport/matRad_importDicomRtss.m b/dicomImport/matRad_importDicomRtss.m index 2cb512994..3519e1c09 100755 --- a/dicomImport/matRad_importDicomRtss.m +++ b/dicomImport/matRad_importDicomRtss.m @@ -37,8 +37,13 @@ visBool = 0; end +env = matRad_getEnvironment(); +matRad_checkEnvDicomRequirements(env); +isOctave = strcmp(env,'OCTAVE'); + + % read dicom info (this includes already all data for the rtss) -if verLessThan('matlab','9') +if isOctave || verLessThan('matlab','9') structInfo = dicominfo(filename); else % apply 'UseVRHeuristic' option when available to use a to help read certain % noncompliant files which switch value representation (VR) modes incorrectly diff --git a/dicomImport/matRad_importDicomSteeringParticles.m b/dicomImport/matRad_importDicomSteeringParticles.m index e890a1c88..23225e1c6 100644 --- a/dicomImport/matRad_importDicomSteeringParticles.m +++ b/dicomImport/matRad_importDicomSteeringParticles.m @@ -36,6 +36,10 @@ %% load plan file % load machine data +env = matRad_getEnvironment(); +matRad_checkEnvDicomRequirements(env); +isOctave = strcmp(env,'OCTAVE'); + dlgBaseDataText = ['Import steering information from DICOM Plan.','Choose corresponding matRad base data for ', ... pln.radiationMode, '.']; % messagebox only necessary for non windows users @@ -49,7 +53,7 @@ pln.machine = fileName(ix(1)+1:end-4); % RT Plan consists only on meta information -if verLessThan('matlab','9') +if isOctave || verLessThan('matlab','9') rtPlanInfo = dicominfo(rtPlanFile{1}); else rtPlanInfo = dicominfo(rtPlanFile{1},'UseDictionaryVR',true); diff --git a/dicomImport/matRad_interpDicomDoseCube.m b/dicomImport/matRad_interpDicomDoseCube.m index 2dc32126d..f8f07182c 100644 --- a/dicomImport/matRad_interpDicomDoseCube.m +++ b/dicomImport/matRad_interpDicomDoseCube.m @@ -29,8 +29,14 @@ % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % read information out of the RT file + +env = matRad_getEnvironment(); +matRad_checkEnvDicomRequirements(env); +isOctave = strcmp(env,'OCTAVE'); + dosefile = currDose{1}; -if verLessThan('matlab','9') + +if isOctave || verLessThan('matlab','9') doseInfo = dicominfo(dosefile); else doseInfo = dicominfo(dosefile,'UseDictionaryVR',true); diff --git a/dicomImport/matRad_scanDicomImportFolder.m b/dicomImport/matRad_scanDicomImportFolder.m index 07d7e92eb..2bfab1830 100755 --- a/dicomImport/matRad_scanDicomImportFolder.m +++ b/dicomImport/matRad_scanDicomImportFolder.m @@ -38,9 +38,13 @@ %% get all files in search directory % dicom import needs image processing toolbox -> check if available -if ~license('checkout','image_toolbox') - error('image processing toolbox and/or corresponding licence not available'); -end + +env = matRad_getEnvironment(); + +matRad_checkEnvDicomRequirements(env); + +isOctave = strcmp(env,'OCTAVE'); + fileList = matRad_listAllFiles(patDir); @@ -53,7 +57,7 @@ for i = numOfFiles:-1:1 waitbar((numOfFiles+1-i) / steps) try % try to get DicomInfo - if verLessThan('matlab','9') + if isOctave || verLessThan('matlab','9') info = dicominfo(fileList{i}); else info = dicominfo(fileList{i},'UseDictionaryVR',true); From fa937eebf6376dd759b52dd562d931a4c4b2183f Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Fri, 9 Aug 2019 14:04:03 +0200 Subject: [PATCH 05/87] improves matRadGUI compability and fixes display of the new obejctive table --- matRadGUI.m | 255 ++++++++++++++++++++++++++++------------------------ 1 file changed, 139 insertions(+), 116 deletions(-) diff --git a/matRadGUI.m b/matRadGUI.m index 73bef818f..4e1a16712 100644 --- a/matRadGUI.m +++ b/matRadGUI.m @@ -42,17 +42,6 @@ [env, versionString] = matRad_getEnvironment(); -% abort for octave -switch env - case 'MATLAB' - - case 'OCTAVE' - fprintf(['matRad GUI not available for ' env ' ' versionString ' \n']); - return; - otherwise - fprintf(['not yet tested']); - end - % Begin initialization code - DO NOT EDIT % set platform specific look and feel if ispc @@ -62,7 +51,28 @@ elseif ismac lf = 'com.apple.laf.AquaLookAndFeel'; end -javax.swing.UIManager.setLookAndFeel(lf); + +% handle environment +switch env + case 'MATLAB' + javax.swing.UIManager.setLookAndFeel(lf); + case 'OCTAVE' + verSplit = strsplit(versionString,'.'); + if str2double(verSplit{1}) < 5 + fprintf('matRad GUI not supported for %s %s\n',env,versionString); + return; + else + warning('matRad GUI experimental for %s %s\n',env,versionString); + end + otherwise + warning('matRad GUI never tested for %s %s\n',env,versionString); +end + + + + + + gui_Singleton = 1; gui_State = struct('gui_Name', mfilename, ... @@ -84,63 +94,73 @@ % End initialization code - DO NOT EDIT function handles = resetGUI(hObject, handles, varargin) -% enable opengl software rendering to visualize linewidths properly -if ispc - opengl software -elseif ismac - % opengl is not supported + +[env, versionString] = matRad_getEnvironment(); + +if strcmp(env,'MATLAB') + %OpenGL only works for pc (maybe also for linux?) + if ispc + opengl software + end end +handles.guiFilePath = mfilename('fullpath'); +handles.guiFilePath = fileparts(handles.guiFilePath); + % Choose default command line output for matRadGUI handles.output = hObject; %show matrad logo axes(handles.axesLogo) -[im, ~, alpha] = imread('matrad_logo.png'); +[im, ~, alpha] = imread([handles.guiFilePath filesep 'gfx' filesep 'matrad_logo.png']); f = image(im); axis equal off set(f, 'AlphaData', alpha); % show dkfz logo axes(handles.axesDKFZ) -[im, ~, alpha] = imread('DKFZ_Logo.png'); +[im, ~, alpha] = imread([handles.guiFilePath filesep 'gfx' filesep 'DKFZ_Logo.png']); f = image(im); axis equal off; set(f, 'AlphaData', alpha); -% turn off the datacursormode (since it does not allow to set scrolling -% callbacks -handles.dcm_obj = datacursormode(handles.figure1); -set(handles.dcm_obj,'DisplayStyle','window'); -if strcmpi(get(handles.dcm_obj,'Enable'),'on') - set(handles.dcm_obj,'Enable','off'); +if strcmp(env,'MATLAB') + % turn off the datacursormode (since it does not allow to set scrolling + % callbacks + handles.dcm_obj = datacursormode(handles.figure1); + set(handles.dcm_obj,'DisplayStyle','window'); + if strcmpi(get(handles.dcm_obj,'Enable'),'on') + set(handles.dcm_obj,'Enable','off'); + end + %Add the callback for the datacursor display + set(handles.dcm_obj,'UpdateFcn',@dataCursorUpdateFunction); end -%Add the callback for the datacursor display -set(handles.dcm_obj,'UpdateFcn',@dataCursorUpdateFunction); - % set callback for scroll wheel function set(gcf,'WindowScrollWheelFcn',@matRadScrollWheelFcn); -% change color of toobar but only the first time GUI is started -if handles.initialGuiStart - hToolbar = findall(hObject,'tag','uitoolbar1'); - jToolbar = get(get(hToolbar,'JavaContainer'),'ComponentPeer'); - jToolbar.setBorderPainted(false); - color = java.awt.Color.gray; - % Remove the toolbar border, to blend into figure contents - jToolbar.setBackground(color); - % Remove the separator line between toolbar and contents - warning('off','MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame'); - jFrame = get(handle(hObject),'JavaFrame'); - jFrame.showTopSeparator(false); - jtbc = jToolbar.getComponents; - for idx=1:length(jtbc) - jtbc(idx).setOpaque(false); - jtbc(idx).setBackground(color); - for childIdx = 1 : length(jtbc(idx).getComponents) - jtbc(idx).getComponent(childIdx-1).setBackground(color); - end - end +if strcmp(env,'MATLAB') + % change color of toobar but only the first time GUI is started + if handles.initialGuiStart + hToolbar = findall(hObject,'tag','uitoolbar1'); + jToolbar = get(get(hToolbar,'JavaContainer'),'ComponentPeer'); + jToolbar.setBorderPainted(false); + color = java.awt.Color.gray; + % Remove the toolbar border, to blend into figure contents + jToolbar.setBackground(color); + % Remove the separator line between toolbar and contents + warning('off','MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame'); + jFrame = get(handle(hObject),'JavaFrame'); + jFrame.showTopSeparator(false); + jtbc = jToolbar.getComponents; + for idx=1:length(jtbc) + jtbc(idx).setOpaque(false); + jtbc(idx).setBackground(color); + for childIdx = 1 : length(jtbc(idx).getComponents) + jtbc(idx).getComponent(childIdx-1).setBackground(color); + end + end + end end +set(handles.uipanel3,'SizeChangedFcn',@(hObject,eventdata)matRadGUI('uipanel3_SizeChangedFcn',hObject,eventdata,guidata(hObject))); set(handles.legendTable,'String',{'no data loaded'}); % clear VOIPlotFlag @@ -830,9 +850,10 @@ function UpdatePlot(handles) defaultFontSize = 8; currAxes = axis(handles.axesFig); -AxesHandlesCT_Dose = gobjects(0); AxesHandlesVOI = cell(0); -AxesHandlesIsoDose = gobjects(0); + +AxesHandlesCT_Dose = cell(0); +AxesHandlesIsoDose = cell(0); if handles.State == 0 cla reset @@ -939,7 +960,7 @@ function UpdatePlot(handles) end if get(handles.radiobtnCT,'Value') - [AxesHandlesCT_Dose(end+1),~,handles.dispWindow{ctIx,1}] = matRad_plotCtSlice(handles.axesFig,plotCtCube,1,plane,slice,ctMap,handles.dispWindow{ctIx,1}); + [AxesHandlesCT_Dose{end+1},~,handles.dispWindow{ctIx,1}] = matRad_plotCtSlice(handles.axesFig,plotCtCube,1,plane,slice,ctMap,handles.dispWindow{ctIx,1}); % plot colorbar? If 1 the user asked for the CT if plotColorbarSelection == 2 && handles.cBarChanged @@ -979,7 +1000,7 @@ function UpdatePlot(handles) if get(handles.radiobtnDose,'Value') [doseHandle,~,handles.dispWindow{doseIx,1}] = matRad_plotDoseSlice(handles.axesFig,dose,plane,slice,handles.CutOffLevel,handles.doseOpacity,doseMap,handles.dispWindow{doseIx,1}); - AxesHandlesCT_Dose(end+1) = doseHandle; + AxesHandlesCT_Dose{end+1} = doseHandle; end % plot colorbar? @@ -4154,25 +4175,33 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) cstPanel = handles.uipanel3; -cstPanelPos = getpixelposition(cstPanel); + + +cstPanelPos = get(cstPanel,'Position'); +cstPanelPosUnit = get(cstPanel,'Units'); +set(cstPanel,'Units','pixels'); +cstPanelPosPix = get(cstPanel,'Position'); +set(cstPanel,'Units',cstPanelPosUnit); + +aspectRatio = cstPanelPosPix(3) / cstPanelPosPix(4); %Parameters for line height -objHeight = 22; -lineHeight = 25; %Height of a table line -fieldSep = 2; %Separation between fields horizontally -yTopSep = 40; %Separation of the first line from the top -tableViewHeight = cstPanelPos(4) - yTopSep; %Full height of the view +objHeight = 0.095;% 22; +lineHeight = 0.1; %25; %Height of a table line +yTopSep = 0.12;%40; %Separation of the first line from the top +%tableViewHeight = cstPanelPos(4) - yTopSep; %Full height of the view +tableViewHeight = 1 - yTopSep; %Widths of the fields -buttonW = objHeight; -nameW = 90; -typeW = 70; -opW = objHeight; -functionW = 120; -penaltyW = 40; -paramTitleW = 120; -paramW = 30; - +buttonW = objHeight / aspectRatio; % Make button squared +nameW = 3.5*buttonW;%60; +typeW = 3*buttonW;%70; +opW = buttonW;%objHeight; +functionW = 6*buttonW;%120; +penaltyW = 2*buttonW;%40; +paramTitleW = 4*buttonW;%120; +paramW = 2*buttonW;%30; +fieldSep = 0.25*buttonW; %Separation between fields horizontally %Scrollbar cstVertTableScroll = findobj(cstPanel.Children,'Style','slider'); @@ -4194,23 +4223,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) %columnname = {'VOI name','VOI type','priority','obj. / const.'};%,'penalty','dose', 'EUD','volume','robustness'}; %Get all Classes & classNames -mpkgObjectives = meta.package.fromName('DoseObjectives'); -mpkgConstraints = meta.package.fromName('DoseConstraints'); -classList = [mpkgObjectives.ClassList; mpkgConstraints.ClassList]; - -classList = classList(not([classList.Abstract])); - -%Now get the "internal" name from the properties -classNames = cell(2,numel(classList)); -for clIx = 1:numel(classList) - cl = classList(clIx); - pList = cl.PropertyList; %Get List of all properties - pNameIx = arrayfun(@(p) strcmp(p.Name,'name'),pList); %get index of the "name" property - p = pList(pNameIx); %select name property - pName = p.DefaultValue; % get value / name - classNames(:,clIx) = {cl.Name; pName}; %Store class name and display name -end - +classNames = matRad_getObjectivesAndConstraints(); % Collect Class-File & Display Names %classNames = {classList.Name; p.DefaultValue}; @@ -4230,20 +4243,21 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) newline = '\n'; %Setup Headlines -xPos = 5; -h = uicontrol(cstPanel,'Style','text','String','+/-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove or add Constraint or Objective'); +xPos = 0.01; %5 + +h = uicontrol(cstPanel,'Style','text','String','+/-','Units','normalized','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove or add Constraint or Objective'); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','VOI name','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name of the structure with objective/constraint'); +h = uicontrol(cstPanel,'Style','text','String','VOI name','Units','normalized','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name of the structure with objective/constraint'); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','VOI type','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification'); +h = uicontrol(cstPanel,'Style','text','String','VOI type','Units','normalized','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification'); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','OP','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' char(10) '(Smaller number overlaps higher number)']); +h = uicontrol(cstPanel,'Style','text','String','OP','Units','normalized','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' char(10) '(Smaller number overlaps higher number)']); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','Function','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Objective/Constraint function type'); +h = uicontrol(cstPanel,'Style','text','String','Function','Units','normalized','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Objective/Constraint function type'); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','p','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Optimization penalty'); +h = uicontrol(cstPanel,'Style','text','String','p','Units','normalized','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Optimization penalty'); xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','| Parameters','Position',[xPos ypos(cnt) paramTitleW objHeight],'TooltipString','List of parameters','HorizontalAlignment','left'); +h = uicontrol(cstPanel,'Style','text','String','| Parameters','Units','normalized','Position',[xPos ypos(cnt) paramTitleW objHeight],'TooltipString','List of parameters','HorizontalAlignment','left'); xPos = xPos + h.Position(3) + fieldSep; cnt = cnt + 1; @@ -4263,66 +4277,75 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) continue; end end - + %VOI %data{Counter,1} = cst{i,2}; %ypos = cstPanelPos(4) - (yTopSep + cnt*lineHeight); - xPos = 5; + xPos = 0.01;%5; %h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos 100 objHeight]); %h.Value = i; - h = uicontrol(cstPanel,'Style','pushbutton','String','-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove Objective/Constraint','Callback',{@btObjRemove_Callback,handles},... + h = uicontrol(cstPanel,'Style','pushbutton','String','-','Units','normalized','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove Objective/Constraint','Callback',{@btObjRemove_Callback,handles},... 'UserData',[i,j]); - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel','Style','edit','String',cst{i,2},'Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name',... + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; + h = uicontrol(cstPanel','Style','edit','String',cst{i,2},'Units','normalized','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name',... 'Enable','inactive',... %Disable editing of name atm 'UserData',[i,2],'Callback',{@editCstParams_Callback,handles}); %Callback added, however, editing is disabled atm - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel,'Style','popupmenu','String',organTypes','Value',find(strcmp(cst{i,3},organTypes)),'Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification',... + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; + h = uicontrol(cstPanel,'Style','popupmenu','String',organTypes','Value',find(strcmp(cst{i,3},organTypes)),'Units','normalized','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification',... 'UserData',[i,3],'Callback',{@editCstParams_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel,'Style','edit','String',num2str(cst{i,5}.Priority),'Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' newline '(Smaller number overlaps higher number)'],... + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; + h = uicontrol(cstPanel,'Style','edit','String',num2str(cst{i,5}.Priority),'Units','normalized','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' newline '(Smaller number overlaps higher number)'],... 'UserData',[i,5],'Callback',{@editCstParams_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; - h = uicontrol(cstPanel,'Style','popupmenu','String',classNames(2,:)','Value',find(strcmp(obj.name,classNames(2,:))),'Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Select Objective/Constraint',... + h = uicontrol(cstPanel,'Style','popupmenu','String',classNames(2,:)','Value',find(strcmp(obj.name,classNames(2,:))),'Units','normalized','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Select Objective/Constraint',... 'UserData',{[i,j],classNames(1,:)},'Callback',{@changeObjFunction_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; %Check if we have an objective to display penalty if isa(obj,'DoseObjectives.matRad_DoseObjective') - h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.penalty),'Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Objective Penalty','UserData',[i,j,0],'Callback',{@editObjParam_Callback,handles}); + h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.penalty),'Units','normalized','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Objective Penalty','UserData',[i,j,0],'Callback',{@editObjParam_Callback,handles}); else - h = uicontrol(cstPanel,'Style','edit','String','----','Position',[xPos ypos(cnt) penaltyW objHeight],'Enable','off'); + h = uicontrol(cstPanel,'Style','edit','String','----','Units','normalized','Position',[xPos ypos(cnt) penaltyW objHeight],'Enable','off'); end - xPos = xPos + h.Position(3) + fieldSep; + tmp_pos = get(h,'Position'); + xPos = xPos + tmp_pos(3) + fieldSep; for p = 1:numel(obj.parameterNames) %h = uicontrol(cstPanel,'Style','edit','String',obj.parameters{1,p},'Position',[xPos ypos(cnt) 100 objHeight],'Enable','inactive'); %xPos = xPos + h.Position(3) + fieldSep; - h = text('Parent',tmpAxes,'String',['| ' obj.parameterNames{p} ':'],'VerticalAlignment','middle','units','pix','Position',[xPos ypos(cnt)+lineHeight/2],'Interpreter','tex','FontWeight','normal',... + h = text('Parent',tmpAxes,'String',['| ' obj.parameterNames{p} ':'],'VerticalAlignment','middle','Units','normalized','Position',[xPos ypos(cnt)+lineHeight/2],'Interpreter','tex','FontWeight','normal',... 'FontSize',cstPanel.FontSize,'FontName',cstPanel.FontName,'FontUnits',cstPanel.FontUnits,'FontWeight','normal');%[xPos ypos(cnt) 100 objHeight]); - xPos = xPos + h.Extent(3) + fieldSep; + tmp_pos = get(h,'Extent'); + xPos = xPos + tmp_pos(3) + fieldSep; %h = annotation(cstPanel,'textbox','String',obj.parameters{1,p},'Units','pix','Position', [xPos ypos(cnt) 100 objHeight],'Interpreter','Tex'); %Check if we have a cell and therefore a parameter list if iscell(obj.parameterTypes{p}) - h = uicontrol(cstPanel,'Style','popupmenu','String',obj.parameterTypes{p}','Value',obj.parameters{p},'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW*2 objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); + h = uicontrol(cstPanel,'Style','popupmenu','String',obj.parameterTypes{p}','Value',obj.parameters{p},'TooltipString',obj.parameterNames{p},'Units','normalized','Position',[xPos ypos(cnt) paramW*2 objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); else - h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.parameters{p}),'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); + h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.parameters{p}),'TooltipString',obj.parameterNames{p},'Units','normalized','Position',[xPos ypos(cnt) paramW objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); end - xPos = xPos + h.Position(3) + fieldSep; + tmp_pos = get(h,'Extent'); + xPos = xPos + tmp_pos(3) + fieldSep; end cnt = cnt +1; end end end -xPos = 5; -hAdd = uicontrol(cstPanel,'Style','pushbutton','String','+','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Add Objective/Constraint','Callback',{@btObjAdd_Callback,handles}); -xPos = xPos + hAdd.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos(cnt) nameW objHeight]); +xPos = 0.01; %5 +hAdd = uicontrol(cstPanel,'Style','pushbutton','String','+','Units','normalized','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Add Objective/Constraint','Callback',{@btObjAdd_Callback,handles}); +tmp_pos = get(hAdd,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; +h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Units','normalized','Position',[xPos ypos(cnt) nameW objHeight]); hAdd.UserData = h; %Calculate Scrollbar From 78fd92747ae61dcea08895f4a5000b48d973fa25 Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Fri, 9 Aug 2019 18:38:16 +0200 Subject: [PATCH 06/87] changes to the GUI so that exported main and layout fcn are used --- {dicomImport => gfx}/DKFZ_Logo.png | Bin {dicomImport => gfx}/matrad_logo.png | Bin gui/matRadGUI_LayoutFcn.m | 2348 +++++ gui/matRadGUI_gui_mainFcn.m | 291 + matRadGUI.m | 74 +- matRadGUI_export.m | 7518 ----------------- matRadGUI_export.mat | Bin 7550 -> 0 bytes .../matRad_getObjectivesAndConstraints.m | 96 + plotting/matRad_plotColorbar.m | 4 +- plotting/matRad_plotIsoDoseLines.m | 9 +- tools/matRad_fixExportedGUI.m | 89 +- 11 files changed, 2858 insertions(+), 7571 deletions(-) rename {dicomImport => gfx}/DKFZ_Logo.png (100%) mode change 100755 => 100644 rename {dicomImport => gfx}/matrad_logo.png (100%) mode change 100755 => 100644 create mode 100644 gui/matRadGUI_LayoutFcn.m create mode 100644 gui/matRadGUI_gui_mainFcn.m delete mode 100644 matRadGUI_export.m delete mode 100644 matRadGUI_export.mat create mode 100644 optimization/matRad_getObjectivesAndConstraints.m diff --git a/dicomImport/DKFZ_Logo.png b/gfx/DKFZ_Logo.png old mode 100755 new mode 100644 similarity index 100% rename from dicomImport/DKFZ_Logo.png rename to gfx/DKFZ_Logo.png diff --git a/dicomImport/matrad_logo.png b/gfx/matrad_logo.png old mode 100755 new mode 100644 similarity index 100% rename from dicomImport/matrad_logo.png rename to gfx/matrad_logo.png diff --git a/gui/matRadGUI_LayoutFcn.m b/gui/matRadGUI_LayoutFcn.m new file mode 100644 index 000000000..9017006a9 --- /dev/null +++ b/gui/matRadGUI_LayoutFcn.m @@ -0,0 +1,2348 @@ +% --- Creates and returns a handle to the GUI figure. +function h1 = matRadGUI_LayoutFcn(policy) +% policy - create a new figure or use a singleton. 'new' or 'reuse'. + +persistent hsingleton; +if strcmpi(policy, 'reuse') & ishandle(hsingleton) + h1 = hsingleton; + return; +end +load matRadGUI.mat + + +appdata = []; +appdata.GUIDEOptions = mat{1}; +appdata.lastValidTag = 'figure1'; +appdata.UsedByGUIData_m = struct(... + 'windowPresets', struct(... + 'name', 'Custom', ... + 'center', NaN, ... + 'width', NaN)); +appdata.GUIDELayoutEditor = []; +appdata.initTags = struct(... + 'handle', [], ... + 'tag', 'figure1'); + +h1 = figure(... +'PaperUnits',get(0,'defaultfigurePaperUnits'),... +'Units','characters',... +'Position',[138.4 -7.38461538461539 273.4 59.5384615384615],... +'Visible','on',... +'Color',[0.501960784313725 0.501960784313725 0.501960784313725],... +'CloseRequestFcn',@(hObject,eventdata)matRadGUI('figure1_CloseRequestFcn',hObject,eventdata,guidata(hObject)),... +'IntegerHandle','off',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'MenuBar','none',... +'Name','matRadGUI',... +'NumberTitle','off',... +'HandleVisibility','callback',... +'Tag','figure1',... +'UserData',[],... +'PaperPosition',get(0,'defaultfigurePaperPosition'),... +'PaperSize',[20.99999864 29.69999902],... +'PaperType',get(0,'defaultfigurePaperType'),... +'InvertHardcopy',get(0,'defaultfigureInvertHardcopy'),... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'axesLogo'; + +h2 = axes(... +'Parent',h1,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[1 0.305555555555556 0.305555555555556],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'XTick',[0 0.2 0.4 0.6 0.8 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.5 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.5'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'Position',[0.444874274661509 0.893725992317542 0.184397163120567 0.0998719590268886],... +'ActivePositionProperty','position',... +'LooseInset',[0.182759687929063 0.112926163636008 0.133555156563546 0.0769951115700055],... +'FontSize',9.63,... +'SortMethod','childorder',... +'Tag','axesLogo',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h3 = get(h2,'title'); + +set(h3,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'Color',[0 0 0],... +'Position',[0.500002781550089 1.03439285714286 0.500000000000007],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','bold',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h4 = get(h2,'xlabel'); + +set(h4,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0.500000476837158 -0.283480513287831 7.105427357601e-15],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h5 = get(h2,'ylabel'); + +set(h5,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[-0.104158728029993 0.500000476837158 7.105427357601e-15],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h6 = get(h2,'zlabel'); + +set(h6,... +'Parent',h2,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','off',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +appdata = []; +appdata.lastValidTag = 'axesDKFZ'; + +h7 = axes(... +'Parent',h1,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[1 0.155367231638418 0.155367231638418],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'XTick',[0 0.2 0.4 0.6 0.8 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.5 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.5'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'Position',[0.652482269503546 0.903969270166453 0.259187620889749 0.0717029449423816],... +'ActivePositionProperty','position',... +'LooseInset',[0.13 0.11 0.0950000000000001 0.0749999999999999],... +'FontSize',9.63,... +'SortMethod','childorder',... +'Tag','axesDKFZ',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h8 = get(h7,'title'); + +set(h8,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'Color',[0 0 0],... +'Position',[0.500002882574911 1.04815 0.5],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','bold',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h9 = get(h7,'xlabel'); + +set(h9,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0.500000476837158 -0.396872718602964 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h10 = get(h7,'ylabel'); + +set(h10,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[-0.074146891139995 0.500000476837156 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h11 = get(h7,'zlabel'); + +set(h11,... +'Parent',h7,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','off',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +appdata = []; +appdata.lastValidTag = 'uipanel1'; + +h12 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title','Plan',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel1',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.527528809218956 0.430689877498388 0.272727272727273],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtBixelWidth'; + +h13 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','bixel width in [mm]',... +'Style','text',... +'Position',[0.0347043701799486 0.859315589353612 0.17866323907455 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtBixelWidth',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editBixelWidth'; + +h14 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','5',... +'Style','edit',... +'Position',[0.219794344473008 0.889733840304182 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editBixelWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editBixelWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editBixelWidth',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtGantryAngle'; + +h15 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Gantry Angle in °',... +'Style','text',... +'Position',[0.032133676092545 0.752851711026616 0.176092544987147 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtGantryAngle',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editGantryAngle'; + +h16 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','0',... +'Style','edit',... +'Position',[0.219794344473008 0.779467680608365 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editGantryAngle_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editGantryAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editGantryAngle',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtCouchAngle'; + +h17 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Couch Angle in °',... +'Style','text',... +'Position',[0.0347043701799486 0.64638783269962 0.173521850899743 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtCouchAngle',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editCouchAngle'; + +h18 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','0',... +'Style','edit',... +'Position',[0.219794344473008 0.669201520912547 0.161953727506427 0.0836501901140685],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editCouchAngle_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editCouchAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editCouchAngle',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'popupRadMode'; + +h19 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'photons'; 'protons'; 'carbon' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.52851711026616 0.161953727506427 0.114068441064639],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popupRadMode_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupRadMode_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupRadMode',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtRadMode'; + +h20 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Radiation Mode',... +'Style','text',... +'Position',[0.051413881748072 0.539923954372624 0.146529562982005 0.0950570342205324],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtRadMode',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtNumOfFractions'; + +h21 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','# Fractions',... +'Style','text',... +'Position',[0.051413881748072 0.209125475285171 0.143958868894602 0.106463878326996],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtNumOfFractions',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editFraction'; + +h22 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','30',... +'Style','edit',... +'Position',[0.219794344473008 0.228136882129278 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editFraction_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editFraction_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editFraction',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtIsoCenter'; + +h23 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','IsoCenter in [mm]',... +'Style','text',... +'Position',[0.0282776349614396 0.330798479087452 0.201799485861183 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtIsoCenter',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editIsoCenter'; + +h24 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','0 0 0',... +'Style','edit',... +'Position',[0.219794344473008 0.338403041825095 0.161953727506427 0.0836501901140684],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editIsoCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editIsoCenter',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'checkIsoCenter'; + +h25 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Auto.',... +'Style','checkbox',... +'Value',1,... +'Position',[0.38560411311054 0.338403041825095 0.0809768637532133 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('checkIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','checkIsoCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRunSequencing'; + +h26 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Run Sequencing',... +'Style','radiobutton',... +'Position',[0.553984575835475 0.628020880324805 0.173521850899743 0.140684410646388],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('btnRunSequencing_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnRunSequencing',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRunDAO'; + +h27 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Run Direct Aperture Optimization',... +'Style','radiobutton',... +'Position',[0.553984575835475 0.32003608945028 0.294344473007712 0.140684410646388],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('btnRunDAO_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnRunDAO',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtSequencing'; + +h28 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Stratification Levels',... +'Style','text',... +'Position',[0.553984575835475 0.502545595153702 0.179948586118252 0.102661596958175],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtSequencing',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'editSequencingLevel'; + +h29 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','7',... +'Style','edit',... +'Position',[0.58611825192802 0.449313655990204 0.0668380462724936 0.0836501901140685],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('editSequencingLevel_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('editSequencingLevel_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','editSequencingLevel',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'popUpMachine'; + +h30 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',['Generic';' '],... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.418250950570342 0.161953727506427 0.114068441064639],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popUpMachine_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popUpMachine_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popUpMachine',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtMachine'; + +h31 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Machine',... +'Style','text',... +'Position',[0.0732647814910026 0.433460076045627 0.106683804627249 0.0950570342205323],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMachine',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSetTissue'; + +h32 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Set Tissue',... +'Position',[0.401028277634961 0.110266159695817 0.109254498714653 0.0874524714828897],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnSetTissue_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnSetTissue',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popMenuBioOpt'; + +h33 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'none'; 'const_RBExD'; 'LEMIV_effect'; 'LEMIV_RBExD' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.219794344473008 0.0760456273764259 0.165809768637532 0.11787072243346],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popMenuBioOpt_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popMenuBioOpt_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popMenuBioOpt',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'text38'; + +h34 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Type of optimization',... +'Style','text',... +'Position',[0.0102827763496144 0.0988593155893536 0.201799485861183 0.091254752851711],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Interruptible','off',... +'Tag','text38',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobutton3Dconf'; + +h35 = uicontrol(... +'Parent',h12,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','3D conformal',... +'Style','radiobutton',... +'Position',[0.553224553224553 0.757869249394673 0.212121212121212 0.0847457627118644],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobutton3Dconf_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','radiobutton3Dconf',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel2'; + +h36 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title',strtrim(strjoin({ 'Visualization'; ' ' })),... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel2',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.0460947503201024 0.430689877498388 0.203585147247119],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupPlane'; + +h37 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'coronal'; 'sagital'; 'axial' },... +'Style','popupmenu',... +'Value',3,... +'Position',[0.465315808689303 0.582191780821918 0.113636363636364 0.143835616438356],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popupPlane_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupPlane_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupPlane',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'sliderSlice'; + +h38 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'Slider' },... +'Style','slider',... +'Position',[0.134961439588689 0.796610169491525 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('sliderSlice_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('sliderSlice_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderSlice'); + +appdata = []; +appdata.lastValidTag = 'txtPlanSelection'; + +h39 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Plane Selection',... +'Style','text',... +'Position',[0.34258853596203 0.589041095890411 0.11969696969697 0.116438356164384],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtPlanSelection',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text9'; + +h40 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Slice Selection',... +'Style','text',... +'Position',[0.00909090909090909 0.808219178082192 0.113636363636364 0.116438356164384],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text9',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnContour'; + +h41 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot contour',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.733212341197822 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnContour_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnContour',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnDose'; + +h42 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot dose',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.466969147005444 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnDose_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnDose',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnIsoDoseLines'; + +h43 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot isolines',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.600907441016334 0.150943396226415 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnIsoDoseLines_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnIsoDoseLines',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtTypeOfPlot'; + +h44 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Type of plot',... +'Style','text',... +'Position',[0.343053173241852 0.793103448275862 0.108061749571183 0.124137931034483],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtTypeOfPlot',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupTypeOfPlot'; + +h45 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'intensity'; 'profile' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.465315808689303 0.801369863013699 0.113636363636364 0.143835616438356],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popupTypeOfPlot_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupTypeOfPlot_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupTypeOfPlot',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtDisplayOption'; + +h46 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Display option',... +'Style','text',... +'Position',[0.34258853596203 0.39041095890411 0.128787878787879 0.102739726027397],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtDisplayOption',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupDisplayOption'; + +h47 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Please select ... ',... +'Style','popupmenu',... +'Value',1,... +'Position',[0.465315808689303 0.36986301369863 0.196969696969697 0.136986301369863],... +'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... +'Callback',@(hObject,eventdata)matRadGUI('popupDisplayOption_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupDisplayOption_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupDisplayOption',... +'FontWeight','bold'); + +appdata = []; +appdata.lastValidTag = 'txtBeamSelection'; + +h48 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Beam Selection',... +'Style','text',... +'Position',[0.00857632933104631 0.503448275862069 0.118353344768439 0.186206896551724],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtBeamSelection',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'sliderBeamSelection'; + +h49 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','SliderBeamSelection',... +'Style','slider',... +'Position',[0.134961439588689 0.542372881355932 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('sliderBeamSelection_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('sliderBeamSelection_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderBeamSelection'); + +appdata = []; +appdata.lastValidTag = 'btnProfileType'; + +h50 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','lateral',... +'Position',[0.658025928757913 0.794520547945205 0.0863636363636364 0.157534246575343],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnProfileType_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnProfileType',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text16'; + +h51 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','GoTo',... +'Style','text',... +'Position',[0.604795511376553 0.801369863013698 0.0454545454545454 0.123287671232877],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text16',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnDVH'; + +h52 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Show DVH/QI',... +'Position',[0.51413881748072 0.0677966101694915 0.123393316195373 0.129943502824859],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnDVH_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btnDVH',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnIsoDoseLinesLabels'; + +h53 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot isolines labels',... +'Style','radiobutton',... +'Position',[0.780445969125214 0.343557168784029 0.202401372212693 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnIsoDoseLinesLabels_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnIsoDoseLinesLabels',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'textOffset'; + +h54 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Offset',... +'Style','text',... +'Position',[0.00909090909090909 0.287104393008975 0.118181818181818 0.123287671232877],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','textOffset',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'sliderOffset'; + +h55 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','SliderOffset',... +'Style','slider',... +'Position',[0.134961439588689 0.271186440677966 0.167095115681234 0.096045197740113],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('sliderOffset_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('sliderOffset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderOffset'); + +appdata = []; +appdata.lastValidTag = 'radioBtnIsoCenter'; + +h56 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot iso center',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.205989110707804 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radioBtnIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radioBtnIsoCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btn3Dview'; + +h57 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Open 3D-View',... +'Position',[0.595848595848596 0.578947368421053 0.148962148962149 0.157894736842105],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btn3Dview_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Enable','off',... +'Tag','btn3Dview',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnCT'; + +h58 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','plot CT',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.780445969125214 0.864791288566243 0.169811320754717 0.117241379310345],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnCT_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnCT',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'radiobtnPlan'; + +h59 = uicontrol(... +'Parent',h36,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','visualize plan / beams',... +'Style','radiobutton',... +'Value',1,... +'Position',[0.78021978021978 0.0736842105263158 0.2002442002442 0.115789473684211],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('radiobtnPlan_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','radiobtnPlan',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uitoolbar1'; + +h60 = uitoolbar(... +'Parent',h1,... +'Tag','uitoolbar1',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Standard.FileOpen'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''toolbarLoad_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'toolbarLoad'; + +h61 = uipushtool(... +'Parent',h60,... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'Tag','toolbarLoad',... +'CData',mat{2},... +'ClickedCallback',@(hObject,eventdata)matRadGUI('toolbarLoad_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Open File',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Standard.SaveFigure'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''toolbarSave_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'toolbarSave'; + +h62 = uipushtool(... +'Parent',h60,... +'Children',[],... +'BusyAction','cancel',... +'Interruptible','off',... +'Tag','toolbarSave',... +'CData',mat{3},... +'ClickedCallback',@(hObject,eventdata)matRadGUI('toolbarSave_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Save Figure',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = []; +appdata.lastValidTag = 'uipushtool_screenshot'; + +h63 = uipushtool(... +'Parent',h60,... +'Children',[],... +'Tag','uipushtool_screenshot',... +'CData',mat{4},... +'ClickedCallback',@(hObject,eventdata)matRadGUI('uipushtool_screenshot_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'TooltipString','Take a screenshot of the current dose or profile plot',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.ZoomIn'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarZoomIn'; + +h64 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarZoomIn',... +'CData',mat{5},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Zoom In',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.ZoomOut'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarZoomOut'; + +h65 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarZoomOut',... +'CData',mat{6},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Zoom Out',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.Pan'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarPan'; + +h66 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarPan',... +'CData',mat{7},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Pan',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Exploration.DataCursor'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarCursor'; + +h67 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarCursor',... +'CData',mat{8},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Data Cursor',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Annotation.InsertLegend'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', '%default'); +appdata.lastValidTag = 'toolbarLegend'; + +h68 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','toolbarLegend',... +'CData',mat{9},... +'ClickedCallback','%default',... +'Separator','on',... +'TooltipString','Insert Legend',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.toolid = 'Annotation.InsertColorbar'; +appdata.CallbackInUse = struct(... + 'ClickedCallback', 'matRadGUI(''uitoggletool8_ClickedCallback'',gcbo,[],guidata(gcbo))'); +appdata.lastValidTag = 'uitoggletool8'; + +h69 = uitoggletool(... +'Parent',h60,... +'Children',[],... +'Tag','uitoggletool8',... +'CData',mat{10},... +'ClickedCallback',@(hObject,eventdata)matRadGUI('uitoggletool8_ClickedCallback',hObject,eventdata,guidata(hObject)),... +'Separator','on',... +'TooltipString','Insert Colorbar',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel3'; + +h70 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',get(0,'defaultuipanelShadowColor'),... +'Title',strtrim(strjoin({ 'Objectives & constraints'; ' '; ' ' })),... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel3',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.257362355953905 0.430689877498388 0.259923175416133],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel4'; + +h71 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'ShadowColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Title','Workflow',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel4',... +'UserData',[],... +'Clipping','off',... +'Position',[0.00451321727917473 0.810499359795134 0.430045132172792 0.170294494238156],... +'FontName','Helvetica',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text13'; + +h72 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Status:',... +'Style','text',... +'Position',[0.318250377073907 0.107438016528926 0.120663650075415 0.12396694214876],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text13',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtInfo'; + +h73 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','no data loaded',... +'Style','text',... +'Position',[0.414781297134238 0.0247933884297521 0.371040723981901 0.214876033057851],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtInfo',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnLoadMat'; + +h74 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Load *.mat data',... +'Position',[0.151866151866152 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnLoadMat_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnLoadMat',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnCalcDose'; + +h75 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Calc. influence Mx',... +'Position',[0.35006435006435 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnCalcDose_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnCalcDose',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnOptimize'; + +h76 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Optimize',... +'Position',[0.544401544401541 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnOptimize_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnOptimize',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnLoadDicom'; + +h77 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Load DICOM',... +'Position',[0.151866151866152 0.60126582278481 0.177606177606178 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnLoadDicom_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnLoadDicom',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnRefresh'; + +h78 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Refresh',... +'Position',[0.0154440154440154 0.810126582278481 0.0849420849420849 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnRefresh_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnRefresh',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'pushbutton_recalc'; + +h79 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Recalc',... +'Position',[0.543114543114543 0.60126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('pushbutton_recalc_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','pushbutton_recalc',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSaveToGUI'; + +h80 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Save to GUI',... +'Position',[0.738738738738737 0.810126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnSaveToGUI_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnSaveToGUI',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btn_export'; + +h81 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Export',... +'Position',[0.74002574002574 0.60126582278481 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btn_export_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btn_export',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'importDoseButton'; + +h82 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Import Dose',... +'Position',[0.738738738738738 0.392405063291139 0.178893178893179 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('importDoseButton_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','importDoseButton',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'pushbutton_importFromBinary'; + +h83 = uicontrol(... +'Parent',h71,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Import from Binary',... +'Position',[0.151866151866152 0.392405063291139 0.177606177606178 0.145569620253165],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('pushbutton_importFromBinary_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'TooltipString','Imports a patient data set from binary datafiles describing CT and segmentations',... +'Tag','pushbutton_importFromBinary',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text24'; + +h84 = uicontrol(... +'Parent',h1,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','min value:',... +'Style','text',... +'Position',[0.899701069855255 0.87145643693108 0.0420862177470107 0.0253576072821847],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text24',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnSetIsoDoseLevels'; + +h85 = uicontrol(... +'Parent',h1,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Set IsoDose Levels',... +'Position',[0.910792951541851 0.814995131450828 0.071035242290749 0.0223953261927945],... +'BackgroundColor',[0.8 0.8 0.8],... +'Callback',@(hObject,eventdata)matRadGUI('btnSetIsoDoseLevels_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnSetIsoDoseLevels',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel10'; + +h86 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Structure Visibilty',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel10',... +'Clipping','off',... +'Position',[0.896397105097545 0.175812743823147 0.0991189427312775 0.304291287386216],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'legendTable'; + +h87 = uicontrol(... +'Parent',h86,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'Style','listbox',... +'Value',1,... +'Position',[0.02 0.01 0.97 0.98],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('legendTable_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('legendTable_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','legendTable'); + +appdata = []; +appdata.lastValidTag = 'uipanel11'; + +h88 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Viewing',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel11',... +'Clipping','off',... +'Position',[0.437782076079949 0.0460947503201025 0.451321727917473 0.842509603072983],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'axesFig'; + +h89 = axes(... +'Parent',h88,... +'FontUnits',get(0,'defaultaxesFontUnits'),... +'Units',get(0,'defaultaxesUnits'),... +'CameraPosition',[0.5 0.5 9.16025403784439],... +'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... +'CameraTarget',[0.5 0.5 0.5],... +'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... +'CameraViewAngle',6.60861036031192,... +'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... +'PlotBoxAspectRatio',[0.946917808219178 1 0.946917808219178],... +'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... +'FontName','CMU Serif',... +'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... +'GridLineStyle',get(0,'defaultaxesGridLineStyle'),... +'XTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... +'XTickMode',get(0,'defaultaxesXTickMode'),... +'XTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... +'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... +'YTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... +'YTickMode',get(0,'defaultaxesYTickMode'),... +'YTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... +'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... +'Color',get(0,'defaultaxesColor'),... +'Position',[0.0718390804597701 0.0354391371340524 0.902298850574712 0.929121725731895],... +'ActivePositionProperty','position',... +'LooseInset',[0.199881557553276 0.118695547917832 0.146067292058163 0.0809287826712493],... +'FontSize',9.63,... +'SortMethod','childorder',... +'ButtonDownFcn',@(hObject,eventdata)matRadGUI('axesFig_ButtonDownFcn',hObject,eventdata,guidata(hObject)),... +'Tag','axesFig',... +'UserData',[],... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +h90 = get(h89,'title'); + +set(h90,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'Color',[0 0 0],... +'Position',[0.500000554441759 1.00453467465753 0.5],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','Helvetica',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',2,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h91 = get(h89,'xlabel'); + +set(h91,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0.500000476837158 -0.0373767115122652 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','top',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h92 = get(h89,'ylabel'); + +set(h92,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[-0.0474647368237942 0.500000476837158 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',90,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10.593,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','center',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','bottom',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','on',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +h93 = get(h89,'zlabel'); + +set(h93,... +'Parent',h89,... +'Units','data',... +'FontUnits','points',... +'Color',[0.15 0.15 0.15],... +'Position',[0 0 0],... +'PositionMode','auto',... +'String',blanks(0),... +'Interpreter','tex',... +'Rotation',0,... +'RotationMode','auto',... +'FontName','CMU Serif',... +'FontSize',10,... +'FontAngle','normal',... +'FontWeight','normal',... +'HorizontalAlignment','left',... +'HorizontalAlignmentMode','auto',... +'VerticalAlignment','middle',... +'VerticalAlignmentMode','auto',... +'EdgeColor','none',... +'LineStyle','-',... +'LineWidth',0.5,... +'BackgroundColor','none',... +'Margin',3,... +'Clipping','off',... +'XLimInclude','on',... +'YLimInclude','on',... +'ZLimInclude','on',... +'Visible','off',... +'HandleVisibility','off',... +'ButtonDownFcn',blanks(0),... +'BusyAction','queue',... +'Interruptible','on',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... +'DeleteFcn',blanks(0),... +'Tag',blanks(0),... +'HitTest','on',... +'PickableParts','visible'); + +appdata = []; +appdata.lastValidTag = 'uipanel12'; + +h94 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Info',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel12',... +'Clipping','off',... +'Position',[0.896276240708709 0.0448143405889885 0.0991189427312775 0.12932138284251],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'btnAbout'; + +h95 = uicontrol(... +'Parent',h94,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','About',... +'Position',[0.238095238095238 0.134831460674157 0.563492063492063 0.280898876404494],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Callback',@(hObject,eventdata)matRadGUI('btnAbout_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','btnAbout',... +'FontSize',7,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text15'; + +h96 = uicontrol(... +'Parent',h94,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','v3.0.0',... +'Style','text',... +'Position',[0.227106227106227 0.752808988764045 0.523809523809524 0.191011235955056],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text15',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text31'; + +h97 = uicontrol(... +'Parent',h94,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','github.com/e0404/matRad',... +'Style','text',... +'Position',[0.0384615384615385 0.528089887640449 0.942307692307693 0.168539325842697],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text31',... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'uipanel_colormapOptions'; + +h98 = uipanel(... +'Parent',h1,... +'FontUnits',get(0,'defaultuipanelFontUnits'),... +'Units',get(0,'defaultuipanelUnits'),... +'Title','Viewer Options',... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Tag','uipanel_colormapOptions',... +'Clipping','off',... +'Position',[0.896397105097545 0.484330299089727 0.0991189427312775 0.318660598179457],... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text_windowCenter'; + +h99 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Window Center:',... +'Style','text',... +'Position',[0.0466666666666666 0.682461750109027 0.673333333333333 0.0699999999999998],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowCenter',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'textDoseOpacity'; + +h100 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Dose opacity:',... +'Style','text',... +'Position',[0.0466666666666667 0.0706370831711431 0.847328244274809 0.0714285714285714],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','textDoseOpacity',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_chooseColorData'; + +h101 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'None'; 'CT (ED)'; 'Dose' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0486486486486487 0.899328859060403 0.940540540540541 0.11744966442953],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('popupmenu_chooseColorData_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupmenu_chooseColorData_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_chooseColorData'); + +appdata = []; +appdata.lastValidTag = 'slider_windowCenter'; + +h102 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',0.5,... +'Position',[0.0432432432432432 0.63758389261745 0.697297297297297 0.0536912751677853],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('slider_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('slider_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','slider_windowCenter'); + +appdata = []; +appdata.lastValidTag = 'text_windowWidth'; + +h103 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Window Width:',... +'Style','text',... +'Position',[0.0466666666666667 0.545761302394105 0.673333333333333 0.0700000000000001],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowWidth',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_chooseColormap'; + +h104 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Choose Colormap...',... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0362903225806452 0.278843516266481 0.939516129032258 0.0844686648501362],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('popupmenu_chooseColormap_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupmenu_chooseColormap_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_chooseColormap'); + +appdata = []; +appdata.lastValidTag = 'text_windowRange'; + +h105 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Range:',... +'Style','text',... +'Position',[0.0403225806451613 0.387807911050966 0.274193548387097 0.0708446866485015],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowRange',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'edit_windowRange'; + +h106 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','0 1',... +'Style','edit',... +'Position',[0.323863636363636 0.399846781328902 0.653409090909091 0.0707395498392283],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('edit_windowRange_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('edit_windowRange_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowRange'); + +appdata = []; +appdata.lastValidTag = 'edit_windowCenter'; + +h107 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','0.5',... +'Style','edit',... +'Value',1,... +'Position',[0.767567567567568 0.63758389261745 0.205405405405405 0.0704697986577181],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('edit_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('edit_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowCenter'); + +appdata = []; +appdata.lastValidTag = 'edit_windowWidth'; + +h108 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','1.0',... +'Style','edit',... +'Position',[0.772727272727273 0.518256759964609 0.204545454545455 0.0707395498392284],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('edit_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('edit_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','edit_windowWidth'); + +appdata = []; +appdata.lastValidTag = 'sliderOpacity'; + +h109 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',0.6,... +'Position',[0.147727272727273 0.0257234726688103 0.75 0.0546623794212219],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('sliderOpacity_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('sliderOpacity_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','sliderOpacity'); + +appdata = []; +appdata.lastValidTag = 'txtDoseOpacity0Indicator'; + +h110 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','0',... +'Style','text',... +'Position',[0.0466666666666666 0.00599285798906697 0.0810810810810811 0.072463768115942],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','txtDoseOpacity0Indicator',... +'UserData',[],... +'FontName','Helvetica',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtDoseOpacity1Indicator'; + +h111 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','right',... +'String','1',... +'Style','text',... +'Position',[0.8963482566536 0.00864864051690258 0.0810810810810811 0.072463768115942],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','txtDoseOpacity1Indicator',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text_windowPreset'; + +h112 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'HorizontalAlignment','left',... +'String','Window Presets N/A',... +'Style','text',... +'Position',[0.0540540540540541 0.842281879194631 0.697297297297297 0.0704697986577181],... +'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... +'Children',[],... +'Tag','text_windowPreset',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'popupmenu_windowPreset'; + +h113 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String',{ 'Custom'; 'Full'; 'Abd/Med'; 'Head'; 'Liver'; 'Lung'; 'Spine'; 'Vrt/Bone' },... +'Style','popupmenu',... +'Value',1,... +'Position',[0.0486486486486487 0.73489932885906 0.940540540540541 0.11744966442953],... +'BackgroundColor',[1 1 1],... +'Callback',@(hObject,eventdata)matRadGUI('popupmenu_windowPreset_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Visible','off',... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('popupmenu_windowPreset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','popupmenu_windowPreset'); + +appdata = []; +appdata.lastValidTag = 'slider_windowWidth'; + +h114 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'SliderStep',[0.01 0.05],... +'String','slider',... +'Style','slider',... +'Value',1,... +'Position',[0.0454545454545455 0.51140507995425 0.698863636363636 0.0546623794212219],... +'BackgroundColor',[0.9 0.9 0.9],... +'Callback',@(hObject,eventdata)matRadGUI('slider_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI('slider_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... +'Tag','slider_windowWidth'); + +appdata = []; +appdata.lastValidTag = 'checkbox_lockColormap'; + +h115 = uicontrol(... +'Parent',h98,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','Lock Settings',... +'Style','checkbox',... +'Position',[0.0486486486486487 0.151006711409396 0.940540540540541 0.0838926174496644],... +'BackgroundColor',[0.502 0.502 0.502],... +'Callback',@(hObject,eventdata)matRadGUI('checkbox_lockColormap_Callback',hObject,eventdata,guidata(hObject)),... +'Children',[],... +'Tag','checkbox_lockColormap',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'text39'; + +h116 = uicontrol(... +'Parent',h1,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','max value:',... +'Style','text',... +'Position',[0.901903713027061 0.85370611183355 0.0420862177470107 0.0245123537061118],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','text39',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtMinVal'; + +h117 = uicontrol(... +'Parent',h1,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','-',... +'Style','text',... +'Position',[0.955789804908748 0.879908972691808 0.0271397105097546 0.0160598179453836],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMinVal',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + +appdata = []; +appdata.lastValidTag = 'txtMaxVal'; + +h118 = uicontrol(... +'Parent',h1,... +'Units','normalized',... +'FontUnits',get(0,'defaultuicontrolFontUnits'),... +'String','-',... +'Style','text',... +'Position',[0.955789804908748 0.863003901170351 0.0271397105097546 0.0177503250975293],... +'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... +'Children',[],... +'Tag','txtMaxVal',... +'FontSize',10,... +'FontWeight','bold',... +'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); + + +hsingleton = h1; + + +% --- Set application data first then calling the CreateFcn. +function local_CreateFcn(hObject, eventdata, createfcn, appdata) + +if ~isempty(appdata) + names = fieldnames(appdata); + for i=1:length(names) + name = char(names(i)); + setappdata(hObject, name, getfield(appdata,name)); + end +end + +if ~isempty(createfcn) + if isa(createfcn,'function_handle') + createfcn(hObject, eventdata); + else + eval(createfcn); + end +end + + diff --git a/gui/matRadGUI_gui_mainFcn.m b/gui/matRadGUI_gui_mainFcn.m new file mode 100644 index 000000000..b2f4f3a51 --- /dev/null +++ b/gui/matRadGUI_gui_mainFcn.m @@ -0,0 +1,291 @@ +% --- Handles default GUIDE GUI creation and callback dispatch +function varargout = matRadGUI_gui_mainFcn(gui_State, varargin) + +gui_StateFields = {'gui_Name' + 'gui_Singleton' + 'gui_OpeningFcn' + 'gui_OutputFcn' + 'gui_LayoutFcn' + 'gui_Callback'}; +gui_Mfile = ''; +for i=1:length(gui_StateFields) + if ~isfield(gui_State, gui_StateFields{i}) + error(message('MATLAB:guide:StateFieldNotFound', gui_StateFields{ i }, gui_Mfile)); + elseif isequal(gui_StateFields{i}, 'gui_Name') + gui_Mfile = [gui_State.(gui_StateFields{i}), '.m']; + end +end + +numargin = length(varargin); + +if numargin == 0 + % MATRADGUI + % create the GUI only if we are not in the process of loading it + % already + gui_Create = true; +elseif local_isInvokeActiveXCallback(gui_State, varargin{:}) + % MATRADGUI(ACTIVEX,...) + vin{1} = gui_State.gui_Name; + vin{2} = [get(varargin{1}.Peer, 'Tag'), '_', varargin{end}]; + vin{3} = varargin{1}; + vin{4} = varargin{end-1}; + vin{5} = guidata(varargin{1}.Peer); + feval(vin{:}); + return; +elseif local_isInvokeHGCallback(gui_State, varargin{:}) + % MATRADGUI('CALLBACK',hObject,eventData,handles,...) + gui_Create = false; +else + % MATRADGUI(...) + % create the GUI and hand varargin to the openingfcn + gui_Create = true; +end + +if ~gui_Create + % In design time, we need to mark all components possibly created in + % the coming callback evaluation as non-serializable. This way, they + % will not be brought into GUIDE and not be saved in the figure file + % when running/saving the GUI from GUIDE. + designEval = false; + if (numargin>1 && isgraphics(varargin{2})) + fig = varargin{2}; + while ~isempty(fig) && ~isgraphics(fig,'figure') + fig = get(fig,'parent'); + end + + designEval = isappdata(0,'CreatingGUIDEFigure') || (isscalar(fig)&&isprop(fig,'GUIDEFigure')); + end + + if designEval + beforeChildren = findall(fig); + end + + % evaluate the callback now + varargin{1} = gui_State.gui_Callback; + if nargout + [varargout{1:nargout}] = feval(varargin{:}); + else + feval(varargin{:}); + end + + % Set serializable of objects created in the above callback to off in + % design time. Need to check whether figure handle is still valid in + % case the figure is deleted during the callback dispatching. + if designEval && isgraphics(fig) + set(setdiff(findall(fig),beforeChildren), 'Serializable','off'); + end +else + if gui_State.gui_Singleton + gui_SingletonOpt = 'reuse'; + else + gui_SingletonOpt = 'new'; + end + + % Check user passing 'visible' P/V pair first so that its value can be + % used by oepnfig to prevent flickering + gui_Visible = 'auto'; + gui_VisibleInput = ''; + for index=1:2:length(varargin) + if length(varargin) == index || ~ischar(varargin{index}) + break; + end + + % Recognize 'visible' P/V pair + len1 = min(length('visible'),length(varargin{index})); + len2 = min(length('off'),length(varargin{index+1})); + if ischar(varargin{index+1}) && strncmpi(varargin{index},'visible',len1) && len2 > 1 + if strncmpi(varargin{index+1},'off',len2) + gui_Visible = 'invisible'; + gui_VisibleInput = 'off'; + elseif strncmpi(varargin{index+1},'on',len2) + gui_Visible = 'visible'; + gui_VisibleInput = 'on'; + end + end + end + + % Open fig file with stored settings. Note: This executes all component + % specific CreateFunctions with an empty HANDLES structure. + + + % Do feval on layout code in m-file if it exists + gui_Exported = ~isempty(gui_State.gui_LayoutFcn); + % this application data is used to indicate the running mode of a GUIDE + % GUI to distinguish it from the design mode of the GUI in GUIDE. it is + % only used by actxproxy at this time. + setappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name]),1); + if gui_Exported + gui_hFigure = feval(gui_State.gui_LayoutFcn, gui_SingletonOpt); + + % make figure invisible here so that the visibility of figure is + % consistent in OpeningFcn in the exported GUI case + if isempty(gui_VisibleInput) + gui_VisibleInput = get(gui_hFigure,'Visible'); + end + set(gui_hFigure,'Visible','off') + + % openfig (called by local_openfig below) does this for guis without + % the LayoutFcn. Be sure to do it here so guis show up on screen. + movegui(gui_hFigure,'onscreen'); + else + gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); + % If the figure has InGUIInitialization it was not completely created + % on the last pass. Delete this handle and try again. + if isappdata(gui_hFigure, 'InGUIInitialization') + delete(gui_hFigure); + gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); + end + end + if isappdata(0, genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])) + rmappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])); + end + + % Set flag to indicate starting GUI initialization + setappdata(gui_hFigure,'InGUIInitialization',1); + + % Fetch GUIDE Application options + gui_Options = getappdata(gui_hFigure,'GUIDEOptions'); + % Singleton setting in the GUI MATLAB code file takes priority if different + gui_Options.singleton = gui_State.gui_Singleton; + + if ~isappdata(gui_hFigure,'GUIOnScreen') + % Adjust background color + if gui_Options.syscolorfig + set(gui_hFigure,'Color', get(0,'DefaultUicontrolBackgroundColor')); + end + + % Generate HANDLES structure and store with GUIDATA. If there is + % user set GUI data already, keep that also. + data = guidata(gui_hFigure); + handles = guihandles(gui_hFigure); + if ~isempty(handles) + if isempty(data) + data = handles; + else + names = fieldnames(handles); + for k=1:length(names) + data.(char(names(k)))=handles.(char(names(k))); + end + end + end + guidata(gui_hFigure, data); + end + + % Apply input P/V pairs other than 'visible' + for index=1:2:length(varargin) + if length(varargin) == index || ~ischar(varargin{index}) + break; + end + + len1 = min(length('visible'),length(varargin{index})); + if ~strncmpi(varargin{index},'visible',len1) + try set(gui_hFigure, varargin{index}, varargin{index+1}), catch break, end + end + end + + % If handle visibility is set to 'callback', turn it on until finished + % with OpeningFcn + gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); + if strcmp(gui_HandleVisibility, 'callback') + set(gui_hFigure,'HandleVisibility', 'on'); + end + + feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:}); + + if isscalar(gui_hFigure) && isgraphics(gui_hFigure) + % Handle the default callbacks of predefined toolbar tools in this + % GUI, if any + %guidemfile('restoreToolbarToolPredefinedCallback',gui_hFigure); + + % Update handle visibility + set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); + + % Call openfig again to pick up the saved visibility or apply the + % one passed in from the P/V pairs + if ~gui_Exported + gui_hFigure = local_openfig(gui_State.gui_Name, 'reuse',gui_Visible); + elseif ~isempty(gui_VisibleInput) + set(gui_hFigure,'Visible',gui_VisibleInput); + end + if strcmpi(get(gui_hFigure, 'Visible'), 'on') + figure(gui_hFigure); + + if gui_Options.singleton + setappdata(gui_hFigure,'GUIOnScreen', 1); + end + end + + % Done with GUI initialization + if isappdata(gui_hFigure,'InGUIInitialization') + rmappdata(gui_hFigure,'InGUIInitialization'); + end + + % If handle visibility is set to 'callback', turn it on until + % finished with OutputFcn + gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); + if strcmp(gui_HandleVisibility, 'callback') + set(gui_hFigure,'HandleVisibility', 'on'); + end + gui_Handles = guidata(gui_hFigure); + else + gui_Handles = []; + end + + if nargout + [varargout{1:nargout}] = feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); + else + feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); + end + + if isscalar(gui_hFigure) && isgraphics(gui_hFigure) + set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); + end +end + +function gui_hFigure = local_openfig(name, singleton, visible) + +% openfig with three arguments was new from R13. Try to call that first, if +% failed, try the old openfig. +if nargin('openfig') == 2 + % OPENFIG did not accept 3rd input argument until R13, + % toggle default figure visible to prevent the figure + % from showing up too soon. + gui_OldDefaultVisible = get(0,'defaultFigureVisible'); + set(0,'defaultFigureVisible','off'); + gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton); + set(0,'defaultFigureVisible',gui_OldDefaultVisible); +else + % Call version of openfig that accepts 'auto' option" + gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton, visible); +% %workaround for CreateFcn not called to create ActiveX +% peers=findobj(findall(allchild(gui_hFigure)),'type','uicontrol','style','text'); +% for i=1:length(peers) +% if isappdata(peers(i),'Control') +% actxproxy(peers(i)); +% end +% end +end + +function result = local_isInvokeActiveXCallback(gui_State, varargin) + +try + result = ispc && iscom(varargin{1}) ... + && isequal(varargin{1},gcbo); +catch + result = false; +end + +function result = local_isInvokeHGCallback(gui_State, varargin) + +try + fhandle = functions(gui_State.gui_Callback); + result = ~isempty(findstr(gui_State.gui_Name,fhandle.file)) || ... + (ischar(varargin{1}) ... + && isequal(isgraphics(varargin{2}), 1) ... + && (~isempty(strfind(varargin{1},[get(varargin{2}, 'Tag'), '_'])) || ... + ~isempty(strfind(varargin{1}, '_CreateFcn'))) ); +catch + result = false; +end + + diff --git a/matRadGUI.m b/matRadGUI.m index 4e1a16712..4948b936b 100644 --- a/matRadGUI.m +++ b/matRadGUI.m @@ -62,7 +62,14 @@ fprintf('matRad GUI not supported for %s %s\n',env,versionString); return; else - warning('matRad GUI experimental for %s %s\n',env,versionString); + persistent octaveWarningIssued; + if isempty(octaveWarningIssued) + octaveWarningIssued = false; + end + if ~octaveWarningIssued + warning('matRad GUI experimental for %s %s\n',env,versionString); + octaveWarningIssued = true; + end end otherwise warning('matRad GUI never tested for %s %s\n',env,versionString); @@ -79,16 +86,16 @@ 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @matRadGUI_OpeningFcn, ... 'gui_OutputFcn', @matRadGUI_OutputFcn, ... - 'gui_LayoutFcn', [] , ... + 'gui_LayoutFcn', @matRadGUI_LayoutFcn, ... 'gui_Callback', []); if nargin && ischar(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end if nargout - [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); + [varargout{1:nargout}] = matRadGUI_gui_mainFcn(gui_State, varargin{:}); else - gui_mainfcn(gui_State, varargin{:}); + matRadGUI_gui_mainFcn(gui_State, varargin{:}); end % End initialization code - DO NOT EDIT @@ -2538,7 +2545,7 @@ function getPlnFromGUI(handles) else meType = 'basic'; end - Message = {Message,ME.getReport(meType,'hyperlinks','off')}; + Message = {Message,ME.message};%{Message,ME.getReport(meType,'hyperlinks','off')}; end if isfield(handles,'ErrorDlg') @@ -2558,7 +2565,7 @@ function getPlnFromGUI(handles) else meType = 'basic'; end - Message = {Message,ME.getReport(meType,'hyperlinks','off')}; + Message = {Message,ME.message};%{Message,ME.getReport(meType,'hyperlinks','off')}; end if isfield(handles,'WarnDlg') @@ -4204,16 +4211,17 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) fieldSep = 0.25*buttonW; %Separation between fields horizontally %Scrollbar -cstVertTableScroll = findobj(cstPanel.Children,'Style','slider'); +cstPanelChildren = get(cstPanel,'Children'); +cstVertTableScroll = findobj(cstPanelChildren,'Style','slider'); if isempty(cstVertTableScroll) sliderPos = 0; else - sliderPos = cstVertTableScroll.Max - cstVertTableScroll.Value; + sliderPos = get(cstVertTableScroll,'Max') - get(cstVertTableScroll,'Value'); end %disp(num2str(sliderPos)); ypos = @(c) tableViewHeight - c*lineHeight + sliderPos; -delete(cstPanel.Children); +delete(cstPanelChildren); %Creates a dummy axis to allow for the use of textboxes instead of uicontrol to be able to use the (la)tex interpreter tmpAxes = axes('Parent',cstPanel,'units','normalized','position',[0 0 1 1],'visible','off'); @@ -4246,19 +4254,26 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) xPos = 0.01; %5 h = uicontrol(cstPanel,'Style','text','String','+/-','Units','normalized','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove or add Constraint or Objective'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','VOI name','Units','normalized','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name of the structure with objective/constraint'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','VOI type','Units','normalized','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','OP','Units','normalized','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' char(10) '(Smaller number overlaps higher number)']); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','Function','Units','normalized','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Objective/Constraint function type'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','p','Units','normalized','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Optimization penalty'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','text','String','| Parameters','Units','normalized','Position',[xPos ypos(cnt) paramTitleW objHeight],'TooltipString','List of parameters','HorizontalAlignment','left'); -xPos = xPos + h.Position(3) + fieldSep; +tmp_pos = get(h,'Position'); +xPos = xPos + tmp_pos(3) + fieldSep; cnt = cnt + 1; %Create Objectives / Constraints controls @@ -4321,7 +4336,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) %h = uicontrol(cstPanel,'Style','edit','String',obj.parameters{1,p},'Position',[xPos ypos(cnt) 100 objHeight],'Enable','inactive'); %xPos = xPos + h.Position(3) + fieldSep; h = text('Parent',tmpAxes,'String',['| ' obj.parameterNames{p} ':'],'VerticalAlignment','middle','Units','normalized','Position',[xPos ypos(cnt)+lineHeight/2],'Interpreter','tex','FontWeight','normal',... - 'FontSize',cstPanel.FontSize,'FontName',cstPanel.FontName,'FontUnits',cstPanel.FontUnits,'FontWeight','normal');%[xPos ypos(cnt) 100 objHeight]); + 'FontSize',get(cstPanel,'FontSize'),'FontName',get(cstPanel,'FontName'),'FontUnits',get(cstPanel,'FontUnits'),'FontWeight','normal');%[xPos ypos(cnt) 100 objHeight]); tmp_pos = get(h,'Extent'); xPos = xPos + tmp_pos(3) + fieldSep; %h = annotation(cstPanel,'textbox','String',obj.parameters{1,p},'Units','pix','Position', [xPos ypos(cnt) 100 objHeight],'Interpreter','Tex'); @@ -4346,7 +4361,7 @@ function checkbox_lockColormap_Callback(hObject, eventdata, handles) tmp_pos = get(hAdd,'Position'); xPos = xPos + tmp_pos(3) + fieldSep; h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Units','normalized','Position',[xPos ypos(cnt) nameW objHeight]); -hAdd.UserData = h; +set(hAdd,'UserData',h); %Calculate Scrollbar lastPos = ypos(cnt); @@ -4383,8 +4398,8 @@ function btObjAdd_Callback(hObject, ~, handles) % hObject handle to btnuiTableAdd (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) -popupHandle = hObject.UserData; -cstIndex = popupHandle.Value; +popupHandle = get(hObject,'UserData'); +cstIndex = get(popupHandle,'Value'); cst = evalin('base','cst'); %Add Standard Objective @@ -4408,7 +4423,7 @@ function btObjRemove_Callback(hObject, ~, handles) % hObject handle to btnuiTableAdd (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) -ix = hObject.UserData; +ix = get(hObject,'UserData'); cst = evalin('base','cst'); %Add Standard Objective @@ -4429,7 +4444,7 @@ function editObjParam_Callback(hObject, ~, handles) % hObject handle to btnuiTableAdd (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) -ix = hObject.UserData; +ix = get(hObject,'UserData'); cst = evalin('base','cst'); %Add Standard Objective @@ -4473,10 +4488,10 @@ function changeObjFunction_Callback(hObject, ~, handles) % hObject handle to btnuiTableAdd (see GCBO) % eventdata reserved - to be defined in a future version of MATLAB % handles structure with handles and user data (see GUIDATA) -data = hObject.UserData; +data = get(hObject,'UserData'); ix = data{1}; classNames = data{2}; -classToCreate = classNames{hObject.Value}; +classToCreate = classNames{get(hObject,'Value')}; cst = evalin('base','cst'); %Add Standard Objective @@ -4514,13 +4529,16 @@ function editCstParams_Callback(hObject,~,handles) cst = evalin('base','cst'); +str = get(hObject,'String'); +val = get(hObject,'Value'); + switch col case 2 - cst{ix,col} = hObject.String; + cst{ix,col} = str; case 3 - cst{ix,col} = hObject.String{hObject.Value}; + cst{ix,col} = str{val}; case 5 - cst{ix,col}.Priority = uint32(str2double(hObject.String)); + cst{ix,col}.Priority = uint32(str2double(str)); otherwise warning('Wrong column assignment in GUI based cst setting'); end @@ -4582,3 +4600,5 @@ function cstTableSlider_CreateFcn(hObject, eventdata, handles) set(hObject,'BackgroundColor',[.9 .9 .9]); end + + diff --git a/matRadGUI_export.m b/matRadGUI_export.m deleted file mode 100644 index 13149e2f2..000000000 --- a/matRadGUI_export.m +++ /dev/null @@ -1,7518 +0,0 @@ -function varargout = matRadGUI_export(varargin) -% matRad GUI -% -% call -% MATRADGUI_EXPORT, by itself, creates a new MATRADGUI_EXPORT or raises the existing -% singleton*. -% -% H = MATRADGUI_EXPORT returns the handle to a new MATRADGUI_EXPORT or the handle to -% the existing singleton*. -% -% MATRADGUI_EXPORT('CALLBACK',hObject,eventData,handles,...) calls the local -% function named CALLBACK in MATRADGUI_EXPORT.M with the given input arguments. -% -% MATRADGUI_EXPORT('Property','Value',...) creates a new MATRADGUI_EXPORT or raises the -% existing singleton*. Starting from the left, property value pairs are -% applied to the GUI before matRadGUI_export_OpeningFcn gets called. An -% unrecognized property name or invalid value makes property application -% stop. All inputs are passed to matRadGUI_export_OpeningFcn via varargin. -% -% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one -% instance to run (singleton)". -% -% See also: GUIDE, GUIDATA, GUIHANDLES -% -% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -% -% Copyright 2015 the matRad development team. -% -% This file is part of the matRad project. It is subject to the license -% terms in the LICENSE file found in the top-level directory of this -% distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part -% of the matRad project, including this file, may be copied, modified, -% propagated, or distributed except according to the terms contained in the -% LICENSE file. -% -% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - -if ~isdeployed - matRadRootDir = fileparts(mfilename('fullpath')); - addpath(genpath(matRadRootDir)); -end - -[env, versionString] = matRad_getEnvironment(); - -% abort for octave -switch env - case 'MATLAB' - - case 'OCTAVE' - fprintf(['matRad GUI not available for ' env ' ' versionString ' \n']); - return; - otherwise - fprintf(['not yet tested']); - end - -% Begin initialization code - DO NOT EDIT -% set platform specific look and feel -if ispc - lf = 'com.sun.java.swing.plaf.windows.WindowsLookAndFeel'; -elseif isunix - lf = 'com.jgoodies.looks.plastic.Plastic3DLookAndFeel'; -elseif ismac - lf = 'com.apple.laf.AquaLookAndFeel'; -end -javax.swing.UIManager.setLookAndFeel(lf); - -gui_Singleton = 1; -gui_State = struct('gui_Name', mfilename, ... - 'gui_Singleton', gui_Singleton, ... - 'gui_OpeningFcn', @matRadGUI_export_OpeningFcn, ... - 'gui_OutputFcn', @matRadGUI_export_OutputFcn, ... - 'gui_LayoutFcn', @matRadGUI_export_LayoutFcn, ... - 'gui_Callback', []); -if nargin && ischar(varargin{1}) - gui_State.gui_Callback = str2func(varargin{1}); -end - -if nargout - [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); -else - gui_mainfcn(gui_State, varargin{:}); -end - -% End initialization code - DO NOT EDIT - -function handles = resetGUI(hObject, handles, varargin) -% enable opengl software rendering to visualize linewidths properly -if ispc - opengl software -elseif ismac - % opengl is not supported -end - -% Choose default command line output for matRadGUI_export -handles.output = hObject; -%show matrad logo -axes(handles.axesLogo) -[im, ~, alpha] = imread('matrad_logo.png'); -f = image(im); -axis equal off -set(f, 'AlphaData', alpha); -% show dkfz logo -axes(handles.axesDKFZ) -[im, ~, alpha] = imread('DKFZ_Logo.png'); -f = image(im); -axis equal off; -set(f, 'AlphaData', alpha); - -% turn off the datacursormode (since it does not allow to set scrolling -% callbacks -handles.dcm_obj = datacursormode(handles.figure1); -set(handles.dcm_obj,'DisplayStyle','window'); -if strcmpi(get(handles.dcm_obj,'Enable'),'on') - set(handles.dcm_obj,'Enable','off'); -end -%Add the callback for the datacursor display -set(handles.dcm_obj,'UpdateFcn',@dataCursorUpdateFunction); - -% set callback for scroll wheel function -set(gcf,'WindowScrollWheelFcn',@matRadScrollWheelFcn); - -% change color of toobar but only the first time GUI is started -if handles.initialGuiStart - hToolbar = findall(hObject,'tag','uitoolbar1'); - jToolbar = get(get(hToolbar,'JavaContainer'),'ComponentPeer'); - jToolbar.setBorderPainted(false); - color = java.awt.Color.gray; - % Remove the toolbar border, to blend into figure contents - jToolbar.setBackground(color); - % Remove the separator line between toolbar and contents - warning('off','MATLAB:HandleGraphics:ObsoletedProperty:JavaFrame'); - jFrame = get(handle(hObject),'JavaFrame'); - jFrame.showTopSeparator(false); - jtbc = jToolbar.getComponents; - for idx=1:length(jtbc) - jtbc(idx).setOpaque(false); - jtbc(idx).setBackground(color); - for childIdx = 1 : length(jtbc(idx).getComponents) - jtbc(idx).getComponent(childIdx-1).setBackground(color); - end - end -end - - -set(handles.legendTable,'String',{'no data loaded'}); -% clear VOIPlotFlag -if isfield(handles,'VOIPlotFlag') - handles = rmfield(handles,'VOIPlotFlag'); -end - -%seach for availabes machines -handles.Modalities = {'photons','protons','carbon'}; -for i = 1:length(handles.Modalities) - pattern = [handles.Modalities{1,i} '_*']; - if isdeployed - Files = dir([ctfroot filesep 'matRad' filesep pattern]); - else - Files = dir([fileparts(mfilename('fullpath')) filesep pattern]); - end - for j = 1:length(Files) - if ~isempty(Files) - MachineName = Files(j).name(numel(handles.Modalities{1,i})+2:end-4); - if isfield(handles,'Machines') - if sum(strcmp(handles.Machines,MachineName)) == 0 - handles.Machines{size(handles.Machines,2)+1} = MachineName; - end - else - handles.Machines = cell(1); - handles.Machines{1} = MachineName; - end - end - end -end -set(handles.popUpMachine,'String',handles.Machines); - - -vChar = get(handles.editGantryAngle,'String'); -if strcmp(vChar(1,1),'0') && length(vChar)==6 - set(handles.editGantryAngle,'String','0'); -end -vChar = get(handles.editCouchAngle,'String'); -if strcmp(vChar(1,1),'0') && length(vChar)==3 - set(handles.editCouchAngle,'String','0') -end -%% -% handles.State=0 no data available -% handles.State=1 ct cst and pln available; ready for dose calculation -% handles.State=2 ct cst and pln available and dij matric(s) are calculated; -% ready for optimization -% handles.State=3 plan is optimized - - -% if plan is changed go back to state 1 -% if table VOI Type or Priorities changed go to state 1 -% if objective parameters changed go back to state 2 -handles.CutOffLevel = 0.01; % relative cut off level for dose vis -handles.IsoDose.NewIsoDoseFlag = false; -handles.TableChanged = false; -handles.State = 0; -handles.doseOpacity = 0.6; -handles.IsoDose.Levels = 0; -handles.dispWindow = cell(3,2); % first dimension refers to the selected - -% do not calculate / suggest isoCenter new by default -set(handles.checkIsoCenter, 'Value', 0); -set(handles.editIsoCenter,'Enable','on') - -% suppose no ct cube in HU is available (because no ct could be available) -handles.cubeHUavailable = false; -% initial startup finished -handles.initialGuiStart = false; -guidata(hObject, handles); -% eof resetGUI - -function handles = reloadGUI(hObject, handles, ct, cst) -AllVarNames = handles.AllVarNames; - -if ismember('ct',AllVarNames) - % compute HU values - if ~isfield(ct, 'cubeHU') - ct = matRad_electronDensitiesToHU(ct); - assignin('base','ct',ct); - end - if ~isfield(ct, 'cubeHU') - handles.cubeHUavailable = false; - else - handles.cubeHUavailable = true; - end -end - -%set plan if available - if not create one -try - - if ismember('pln',AllVarNames) && handles.State > 0 - % check if you are working with a valid pln - pln = evalin('base','pln'); - if ~isfield(pln,'propStf') - handles = showWarning(handles,'GUI OpeningFunc: Overwriting outdated pln format with default GUI pln'); - evalin('base','clear pln'); - getPlnFromGUI(handles); - end - setPln(handles); - elseif handles.State > 0 - getPlnFromGUI(handles); - setPln(handles); - end - -catch - handles.State = 0; - handles = showError(handles,'GUI OpeningFunc: Could not set or get pln'); -end - -% check for dij structure -if ismember('dij',AllVarNames) - handles.State = 2; -end - -% check for optimized results -if ismember('resultGUI',AllVarNames) - handles.State = 3; -end - -% set some default values -if handles.State == 2 || handles.State == 3 - set(handles.popupDisplayOption,'String','physicalDose'); - handles.SelectedDisplayOption ='physicalDose'; - handles.SelectedDisplayOptionIdx=1; -else - handles.resultGUI = []; - set(handles.popupDisplayOption,'String','no option available'); - handles.SelectedDisplayOption=''; - handles.SelectedDisplayOptionIdx=1; -end - -% precompute iso dose lines -if handles.State == 3 - handles = updateIsoDoseLineCache(handles); -end - -%per default the first beam is selected for the profile plot -handles.selectedBeam = 1; -handles.plane = get(handles.popupPlane,'Value'); -handles.DijCalcWarning = false; - -planePermute = [2 1 3]; - -% set slice slider -if handles.State > 0 - if evalin('base','exist(''pln'',''var'')') - currPln = evalin('base','pln'); - if sum(currPln.propStf.isoCenter(:)) ~= 0 - currSlice = ceil(currPln.propStf.isoCenter(1,planePermute(handles.plane))/ct.resolution.x); - else - currSlice = ceil(ct.cubeDim(planePermute(handles.plane))/2); - end - else % no pln -> no isocenter -> use middle - currSlice = ceil(ct.cubeDim(planePermute(handles.plane))/2); - end - set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... - 'Value',currSlice,... - 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); - - % define context menu for structures - for i = 1:size(cst,1) - if cst{i,5}.Visible - handles.VOIPlotFlag(i) = true; - else - handles.VOIPlotFlag(i) = false; - end - end - else - % reset slider when nothing is loaded - set(handles.sliderSlice,'Min',0,'Max',1,'Value',0,'SliderStep',[1 1]); -end - -%Initialize colormaps and windows -handles.doseColorMap = 'jet'; -handles.ctColorMap = 'bone'; -handles.cMapSize = 64; -handles.cBarChanged = true; - -%Set up the colormap selection box -availableColormaps = matRad_getColormap(); -set(handles.popupmenu_chooseColormap,'String',availableColormaps); - -currentCtMapIndex = find(strcmp(availableColormaps,handles.ctColorMap)); -currentDoseMapIndex = find(strcmp(availableColormaps,handles.doseColorMap)); - -if handles.State >= 1 - set(handles.popupmenu_chooseColormap,'Value',currentCtMapIndex); -end - -if handles.State >= 3 - set(handles.popupmenu_chooseColormap,'Value',currentDoseMapIndex); -end - -% Update handles structure -handles.profileOffset = 0; -UpdateState(handles) - -axes(handles.axesFig) - -handles.rememberCurrAxes = false; -UpdatePlot(handles) -handles.rememberCurrAxes = true; -guidata(hObject, handles); -% eof reloadGUI - -% --- Executes just before matRadGUI_export is made visible. -function matRadGUI_export_OpeningFcn(hObject, ~, handles, varargin) -%#ok<*DEFNU> -%#ok<*AGROW> -% This function has no output args, see OutputFcn. -% hObject handle to figure -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -% varargin command line arguments to matRadGUI_export (see VARARGIN) - -% variable to check whether GUI is opened or just refreshed / new data -% loaded, since resetGUI needs to distinguish at one point - -handles.initialGuiStart = true; - -%If devMode is true, error dialogs will include the full stack trace of the error -%If false, only the basic error message is shown (works for errors that -%handle the MException object) -handles.devMode = true; - -set(handles.radiobtnPlan,'value',0); - -handles = resetGUI(hObject, handles); - -%% parse variables from base workspace -AllVarNames = evalin('base','who'); -handles.AllVarNames = AllVarNames; -try - if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - ct = evalin('base','ct'); - cst = evalin('base','cst'); - %cst = setCstTable(handles,cst); - cst = generateCstTable(handles,cst); - handles.State = 1; - cst = matRad_computeVoiContoursWrapper(cst,ct); - assignin('base','cst',cst); - - elseif ismember('ct',AllVarNames) && ~ismember('cst',AllVarNames) - handles = showError(handles,'GUI OpeningFunc: could not find cst file'); - elseif ~ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - handles = showError(handles,'GUI OpeningFunc: could not find ct file'); - end -catch - handles = showError(handles,'GUI OpeningFunc: Could not load ct and cst file'); -end - -if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - handles = reloadGUI(hObject, handles, ct, cst); -else - handles = reloadGUI(hObject, handles); -end - -guidata(hObject, handles); - - -function Callback_StructVisibilty(source,~) - -handles = guidata(findobj('Name','matRadGUI')); - -contextUiChildren = get(get(handles.figure1,'UIContextMenu'),'Children'); - -Idx = find(strcmp(get(contextUiChildren,'Label'),get(source,'Label'))); -if strcmp(get(source,'Checked'),'on') - set(contextUiChildren(Idx),'Checked','off'); -else - set(contextUiChildren(Idx),'Checked','on'); -end -%guidata(findobj('Name','matRadGUI_export'), handles); -UpdatePlot(handles); - -Update -% --- Outputs from this function are returned to the command line. -function varargout = matRadGUI_export_OutputFcn(~, ~, handles) -% varargout cell array for returning output args (see VARARGOUT); -% hObject handle to figure -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Get default command line output from handles structure -varargout{1} = handles.output; - -% set focus on error dialog -if isfield(handles,'ErrorDlg') - figure(handles.ErrorDlg) -end - -% --- Executes on button press in btnLoadMat. -function btnLoadMat_Callback(hObject, ~, handles) -% hObject handle to btnLoadMat (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -[FileName, FilePath] = uigetfile('*.mat'); -if FileName == 0 % user pressed cancel --> do nothing. - return; -end - -handles = resetGUI(hObject, handles); - -try - - % delete existing workspace - parse variables from base workspace - AllVarNames = evalin('base','who'); - RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; - - for i = 1:length(RefVarNames) - if sum(ismember(AllVarNames,RefVarNames{i}))>0 - evalin('base',['clear ', RefVarNames{i}]); - end - end - - % read new data - load([FilePath FileName]); - set(handles.legendTable,'String',{'no data loaded'}); - set(handles.popupDisplayOption,'String','no option available'); - -catch ME - handles = showError(handles,'LoadMatFileFnc: Could not load *.mat file',ME); - - guidata(hObject,handles); - UpdateState(handles); - UpdatePlot(handles); - return -end - -try - generateCstTable(handles,cst); - handles.TableChanged = false; - set(handles.popupTypeOfPlot,'Value',1); - cst = matRad_computeVoiContoursWrapper(cst,ct); - - assignin('base','ct',ct); - assignin('base','cst',cst); - handles.State = 1; -catch ME - handles = showError(handles,'LoadMatFileFnc: Could not load *.mat file',ME); -end - -% check if a optimized plan was loaded -if exist('stf','var') - assignin('base','stf',stf); -end -if exist('pln','var') - assignin('base','pln',pln); -end -if exist('dij','var') - assignin('base','dij',dij); -end -% if exist('stf','var') && exist('dij','var') -% handles.State = 2; -% end - -if exist('resultGUI','var') - assignin('base','resultGUI',resultGUI); - % handles.State = 3; - % handles.SelectedDisplayOption ='physicalDose'; -end - -% recheck current workspace variables -AllVarNames = evalin('base','who'); -handles.AllVarNames = AllVarNames; - -if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - handles = reloadGUI(hObject, handles, ct, cst); -else - handles = reloadGUI(hObject, handles); -end - -guidata(hObject,handles); - -% --- Executes on button press in btnLoadDicom. -function btnLoadDicom_Callback(hObject, ~, handles) -% hObject handle to btnLoadDicom (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -try - % delete existing workspace - parse variables from base workspace - set(handles.popupDisplayOption,'String','no option available'); - AllVarNames = evalin('base','who'); - RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; - for i = 1:length(RefVarNames) - if sum(ismember(AllVarNames,RefVarNames{i}))>0 - evalin('base',['clear ', RefVarNames{i}]); - end - end - handles.State = 0; - matRad_importDicomGUI; - -catch - handles = showError(handles,'DicomImport: Could not import data'); -end -UpdateState(handles); -guidata(hObject,handles); - - -% --- Executes on button press in btn_export. -function btn_export_Callback(hObject, eventdata, handles) -% hObject handle to btn_export (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -try - matRad_exportGUI; -catch - handles = showError(handles,'Could not export data'); -end -UpdateState(handles); -guidata(hObject,handles); - -function editBixelWidth_Callback(hObject, ~, handles) -% hObject handle to editBixelWidth (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of editBixelWidth as text -% str2double(get(hObject,'String')) returns contents of editBixelWidth as a double -getPlnFromGUI(handles); -if handles.State > 0 - handles.State = 1; - UpdateState(handles); - guidata(hObject,handles); -end - -function editGantryAngle_Callback(hObject, ~, handles) -% hObject handle to editGantryAngle (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of editGantryAngle as text -% str2double(get(hObject,'String')) returns contents of editGantryAngle as a double -getPlnFromGUI(handles); -if handles.State > 0 - handles.State = 1; - UpdateState(handles); - UpdatePlot(handles); - guidata(hObject,handles); -end - -function editCouchAngle_Callback(hObject, ~, handles) -% hObject handle to editCouchAngle (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of editCouchAngle as text -% str2double(get(hObject,'String')) returns contents of editCouchAngle as a double -getPlnFromGUI(handles); -if handles.State > 0 - handles.State = 1; - UpdateState(handles); - guidata(hObject,handles); -end - -% --- Executes on selection change in popupRadMode. -function popupRadMode_Callback(hObject, eventdata, handles) -% hObject handle to popupRadMode (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -checkRadiationComposition(handles); -contents = cellstr(get(hObject,'String')); -RadIdentifier = contents{get(hObject,'Value')}; -contentPopUp = get(handles.popMenuBioOpt,'String'); -switch RadIdentifier - case 'photons' - - set(handles.popMenuBioOpt,'Enable','off'); - ix = find(strcmp(contentPopUp,'none')); - set(handles.popMenuBioOpt,'Value',ix); - set(handles.btnSetTissue,'Enable','off'); - - set(handles.btnRunSequencing,'Enable','on'); - set(handles.btnRunDAO,'Enable','on'); - set(handles.radiobutton3Dconf,'Enable','on'); - set(handles.txtSequencing,'Enable','on'); - set(handles.editSequencingLevel,'Enable','on'); - - case 'protons' - - set(handles.popMenuBioOpt,'Enable','on'); - ix = find(strcmp(contentPopUp,'const_RBExD')); - set(handles.popMenuBioOpt,'Value',ix); - set(handles.btnSetTissue,'Enable','on'); - - set(handles.btnSetTissue,'Enable','off'); - set(handles.btnRunSequencing,'Enable','off'); - set(handles.btnRunDAO,'Enable','off'); - set(handles.radiobutton3Dconf,'Enable','off'); - set(handles.txtSequencing,'Enable','off'); - set(handles.editSequencingLevel,'Enable','off'); - - case 'carbon' - - set(handles.popMenuBioOpt,'Enable','on'); - ix = find(strcmp(contentPopUp,'LEMIV_RBExD')); - set(handles.popMenuBioOpt,'Value',ix); - set(handles.btnSetTissue,'Enable','on'); - - set(handles.btnRunSequencing,'Enable','off'); - set(handles.btnRunDAO,'Enable','off'); - set(handles.radiobutton3Dconf,'Enable','off'); - set(handles.txtSequencing,'Enable','off'); - set(handles.editSequencingLevel,'Enable','off'); -end - -if handles.State > 0 - pln = evalin('base','pln'); - if handles.State > 0 && ~strcmp(contents(get(hObject,'Value')),pln.radiationMode) - - % new radiation modality is photons -> just keep physicalDose - if strcmp(contents(get(hObject,'Value')),'photons') - try - AllVarNames = evalin('base','who'); - if ismember('resultGUI',AllVarNames) - resultGUI = evalin('base','resultGUI'); - if isfield(resultGUI,'alpha'); resultGUI = rmfield(resultGUI,'alpha'); end - if isfield(resultGUI,'beta'); resultGUI = rmfield(resultGUI,'beta'); end - if isfield(resultGUI,'RBExDose'); resultGUI = rmfield(resultGUI,'RBExDose');end - if isfield(resultGUI,'RBE'); resultGUI = rmfield(resultGUI,'RBE'); end - assignin('base','resultGUI',resultGUI); - handles = updateIsoDoseLineCache(handles); - end - catch - end - elseif strcmp(contents(get(hObject,'Value')),'protons') - try - AllVarNames = evalin('base','who'); - if ismember('resultGUI',AllVarNames) - resultGUI = evalin('base','resultGUI'); - if isfield(resultGUI,'alpha'); resultGUI = rmfield(resultGUI,'alpha');end - if isfield(resultGUI,'beta'); resultGUI = rmfield(resultGUI,'beta'); end - if isfield(resultGUI,'RBE'); resultGUI = rmfield(resultGUI,'RBE'); end - assignin('base','resultGUI',resultGUI); - handles = updateIsoDoseLineCache(handles); - end - catch - end - end - - guidata(hObject,handles); - UpdatePlot(handles); - - getPlnFromGUI(handles); - handles.State = 1; - UpdateState(handles); - - end - -guidata(hObject,handles); - -end - - -% --- Executes on button press in btnCalcDose. -function btnCalcDose_Callback(hObject, ~, handles) -% hObject handle to btnCalcDose (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% http://stackoverflow.com/questions/24703962/trigger-celleditcallback-before-button-callback -% http://www.mathworks.com/matlabcentral/newsreader/view_thread/332613 -% wait some time until the CallEditCallback is finished -% Callback triggers the cst saving mechanism from GUI -try - % indicate that matRad is busy - % change mouse pointer to hour glass - Figures = gcf;%findobj('type','figure'); - set(Figures, 'pointer', 'watch'); - drawnow; - % disable all active objects - InterfaceObj = findobj(Figures,'Enable','on'); - set(InterfaceObj,'Enable','off'); - - %pause(0.1); - %uiTable_CellEditCallback(hObject,[],handles); - %pause(0.3); - - %% get cst from table - %if ~getCstTable(handles) - % return - %end - % read plan from gui and save it to workspace - % gets also IsoCenter from GUI if checkbox is not checked - getPlnFromGUI(handles); - - % get default iso center as center of gravity of all targets if not - % already defined - pln = evalin('base','pln'); - - if length(pln.propStf.gantryAngles) ~= length(pln.propStf.couchAngles) - handles = showWarning(handles,'number of gantryAngles != number of couchAngles'); - end - %% - if ~checkRadiationComposition(handles); - fileName = [pln.radiationMode '_' pln.machine]; - handles = showError(handles,errordlg(['Could not find the following machine file: ' fileName ])); - guidata(hObject,handles); - return; - end - - %% check if isocenter is already set - if ~isfield(pln.propStf,'isoCenter') - handles = showWarning(handles,'no iso center set - using center of gravity based on structures defined as TARGET'); - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); - assignin('base','pln',pln); - elseif ~get(handles.checkIsoCenter,'Value') - if ~strcmp(get(handles.editIsoCenter,'String'),'multiple isoCenter') - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*str2num(get(handles.editIsoCenter,'String')); - end - end - -catch ME - handles = showError(handles,'CalcDoseCallback: Error in preprocessing!',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -% generate steering file -try - currPln = evalin('base','pln'); - % if we run 3d conf opt -> hijack runDao to trigger computation of - % connected bixels - if strcmp(pln.radiationMode,'photons') && get(handles.radiobutton3Dconf,'Value') - currpln.propOpt.runDAO = true; - end - stf = matRad_generateStf(evalin('base','ct'),... - evalin('base','cst'),... - currPln); - assignin('base','stf',stf); -catch ME - handles = showError(handles,'CalcDoseCallback: Error in steering file generation!',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -% carry out dose calculation -try - if strcmp(pln.radiationMode,'photons') - dij = matRad_calcPhotonDose(evalin('base','ct'),stf,pln,evalin('base','cst')); - elseif strcmp(pln.radiationMode,'protons') || strcmp(pln.radiationMode,'carbon') - dij = matRad_calcParticleDose(evalin('base','ct'),stf,pln,evalin('base','cst')); - end - - % assign results to base worksapce - assignin('base','dij',dij); - handles.State = 2; - handles.TableChanged = false; - UpdateState(handles); - UpdatePlot(handles); - guidata(hObject,handles); -catch ME - handles = showError(handles,'CalcDoseCallback: Error in dose calculation!',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -% change state from busy to normal -set(Figures, 'pointer', 'arrow'); -set(InterfaceObj,'Enable','on'); - -guidata(hObject,handles); - - - -%% plots ct and distributions -function UpdatePlot(handles) - -%profile on; - -axes(handles.axesFig); - -% this is necessary to prevent multiple callbacks of update plot drawing on -% top of each other in matlab <2014 -drawnow; - -defaultFontSize = 8; -currAxes = axis(handles.axesFig); -AxesHandlesCT_Dose = gobjects(0); -AxesHandlesVOI = cell(0); -AxesHandlesIsoDose = gobjects(0); - -if handles.State == 0 - cla reset - return -elseif handles.State > 0 - ct = evalin('base','ct'); - cst = evalin('base','cst'); - pln = evalin('base','pln'); -end - -%% state 3 indicates that a optimization has been performed - AllVarNames = evalin('base','who'); -if ismember('resultGUI',AllVarNames) - Result = evalin('base','resultGUI'); -end - -if exist('Result','var') - if ~isempty(Result) && ~isempty(ct.cubeHU) && ~isfield(handles,'DispInfo') - - DispInfo = fieldnames(Result); - - for i = 1:size(DispInfo,1) - - % delete weight vectors in Result struct for plotting - if isstruct(Result.(DispInfo{i,1})) || isvector(Result.(DispInfo{i,1})) - Result = rmfield(Result,DispInfo{i,1}); - DispInfo{i,2}=false; - else - %second dimension indicates if it should be plotted - DispInfo{i,2} = true; - % determine units - if strfind(DispInfo{i,1},'physicalDose') - DispInfo{i,3} = '[Gy]'; - elseif strfind(DispInfo{i,1},'alpha') - DispInfo{i,3} = '[Gy^{-1}]'; - elseif strfind(DispInfo{i,1},'beta') - DispInfo{i,3} = '[Gy^{-2}]'; - elseif strfind(DispInfo{i,1},'RBExD') - DispInfo{i,3} = '[Gy(RBE)]'; - elseif strfind(DispInfo{i,1},'LET') - DispInfo{i,3} = '[keV/um]'; - else - DispInfo{i,3} = '[a.u.]'; - end - DispInfo{i,4} = []; % optional for the future: color range for plotting - DispInfo{i,5} = []; % optional for the future: min max values - end - end - - set(handles.popupDisplayOption,'String',fieldnames(Result)); - if sum(strcmp(handles.SelectedDisplayOption,fieldnames(Result))) == 0 - handles.SelectedDisplayOption = DispInfo{find([DispInfo{:,2}],1,'first'),1}; - end - set(handles.popupDisplayOption,'Value',find(strcmp(handles.SelectedDisplayOption,fieldnames(Result)))); - - end -end - -%% set and get required variables -plane = get(handles.popupPlane,'Value'); -slice = round(get(handles.sliderSlice,'Value')); -hold(handles.axesFig,'on'); -if get(handles.popupTypeOfPlot,'Value')==1 - set(handles.axesFig,'YDir','Reverse'); -end - -%% Remove colorbar? -plotColorbarSelection = get(handles.popupmenu_chooseColorData,'Value'); - -if get(handles.popupTypeOfPlot,'Value')==2 || plotColorbarSelection == 1 - if isfield(handles,'cBarHandel') - delete(handles.cBarHandel); - end - %The following seems to be necessary as MATLAB messes up some stuff - %with the handle storage - ch = findall(gcf,'tag','Colorbar'); - if ~isempty(ch) - delete(ch); - end -end - -selectIx = get(handles.popupmenu_chooseColorData,'Value'); - -cla(handles.axesFig); -%% plot ct - if a ct cube is available and type of plot is set to 1 and not 2; 1 indicate cube plotting and 2 profile plotting -if ~isempty(ct) && get(handles.popupTypeOfPlot,'Value')==1 - - if selectIx == 3 - ctIx = 2; - else - ctIx = selectIx; - end - - if isfield(ct, 'cube') - plotCtCube = ct.cube; - else - plotCtCube = ct.cubeHU; - end - - ctMap = matRad_getColormap(handles.ctColorMap,handles.cMapSize); - - if isempty(handles.dispWindow{ctIx,2}) - handles.dispWindow{ctIx,2} = [min(reshape([ct.cubeHU{:}],[],1)) max(reshape([ct.cubeHU{:}],[],1))]; - end - - if get(handles.radiobtnCT,'Value') - [AxesHandlesCT_Dose(end+1),~,handles.dispWindow{ctIx,1}] = matRad_plotCtSlice(handles.axesFig,plotCtCube,1,plane,slice,ctMap,handles.dispWindow{ctIx,1}); - - % plot colorbar? If 1 the user asked for the CT - if plotColorbarSelection == 2 && handles.cBarChanged - %Plot the colorbar - handles.cBarHandel = matRad_plotColorbar(handles.axesFig,ctMap,handles.dispWindow{ctIx,1},'fontsize',defaultFontSize); - %adjust lables - if isfield(ct,'cubeHU') - set(get(handles.cBarHandel,'ylabel'),'String', 'Hounsfield Units','fontsize',defaultFontSize); - else - set(get(handles.cBarHandel,'ylabel'),'String', 'Electron Density','fontsize',defaultFontSize); - end - % do not interprete as tex syntax - set(get(handles.cBarHandel,'ylabel'),'interpreter','none'); - end - end -end - -%% plot dose cube -if handles.State >= 1 && get(handles.popupTypeOfPlot,'Value')== 1 && exist('Result','var') - doseMap = matRad_getColormap(handles.doseColorMap,handles.cMapSize); - doseIx = 3; - % if the selected display option doesn't exist then simply display - % the first cube of the Result struct - if ~isfield(Result,handles.SelectedDisplayOption) - CubeNames = fieldnames(Result); - handles.SelectedDisplayOption = CubeNames{1,1}; - end - - dose = Result.(handles.SelectedDisplayOption); - - % dose colorwash - if ~isempty(dose) && ~isvector(dose) - - if isempty(handles.dispWindow{doseIx,2}) - handles.dispWindow{doseIx,2} = [min(dose(:)) max(dose(:))]; % set min and max dose values - end - - if get(handles.radiobtnDose,'Value') - [doseHandle,~,handles.dispWindow{doseIx,1}] = matRad_plotDoseSlice(handles.axesFig,dose,plane,slice,handles.CutOffLevel,handles.doseOpacity,doseMap,handles.dispWindow{doseIx,1}); - AxesHandlesCT_Dose(end+1) = doseHandle; - end - - % plot colorbar? - if plotColorbarSelection > 2 && handles.cBarChanged - %Plot the colorbar - handles.cBarHandel = matRad_plotColorbar(handles.axesFig,doseMap,handles.dispWindow{selectIx,1},'fontsize',defaultFontSize); - %adjust lables - Idx = find(strcmp(handles.SelectedDisplayOption,DispInfo(:,1))); - set(get(handles.cBarHandel,'ylabel'),'String', [DispInfo{Idx,1} ' ' DispInfo{Idx,3} ],'fontsize',defaultFontSize); - % do not interprete as tex syntax - set(get(handles.cBarHandel,'ylabel'),'interpreter','none'); - end - end - - - %% plot iso dose lines - if get(handles.radiobtnIsoDoseLines,'Value') - plotLabels = get(handles.radiobtnIsoDoseLinesLabels,'Value') == 1; - - %Sanity Check for Contours, which actually should have been - %computed before calling UpdatePlot - if ~isfield(handles.IsoDose,'Contours') - try - handles.IsoDose.Contours = matRad_computeIsoDoseContours(dose,handles.IsoDose.Levels); - catch - %If the computation didn't work, we set the field to - %empty, which will force matRad_plotIsoDoseLines to use - %matlabs contour function instead of repeating the - %failing computation every time - handles.IsoDose.Contours = []; - warning('Could not compute isodose lines! Will try slower contour function!'); - end - end - AxesHandlesIsoDose = matRad_plotIsoDoseLines(handles.axesFig,dose,handles.IsoDose.Contours,handles.IsoDose.Levels,plotLabels,plane,slice,doseMap,handles.dispWindow{doseIx,1},'LineWidth',1.5); - end -end - -selectIx = get(handles.popupmenu_chooseColorData,'Value'); -set(handles.txtMinVal,'String',num2str(handles.dispWindow{selectIx,2}(1,1))); -set(handles.txtMaxVal,'String',num2str(handles.dispWindow{selectIx,2}(1,2))); - -%% plot VOIs -if get(handles.radiobtnContour,'Value') && get(handles.popupTypeOfPlot,'Value')==1 && handles.State>0 - AxesHandlesVOI = [AxesHandlesVOI matRad_plotVoiContourSlice(handles.axesFig,cst,ct,1,handles.VOIPlotFlag,plane,slice,[],'LineWidth',2)]; -end - -%% Set axis labels and plot iso center -matRad_plotAxisLabels(handles.axesFig,ct,plane,slice,defaultFontSize); - -if get(handles.radioBtnIsoCenter,'Value') == 1 && get(handles.popupTypeOfPlot,'Value') == 1 && ~isempty(pln) - hIsoCenterCross = matRad_plotIsoCenterMarker(handles.axesFig,pln,ct,plane,slice); -end - -if get(handles.radiobtnPlan,'value') == 1 && ~isempty(pln) - matRad_plotProjectedGantryAngles(handles.axesFig,pln,ct,plane); -end - -% the following line ensures the plotting order (optional) -% set(gca,'Children',[AxesHandlesCT_Dose hIsoCenterCross AxesHandlesIsoDose AxesHandlesVOI ]); - -%set axis ratio -ratios = [1/ct.resolution.x 1/ct.resolution.y 1/ct.resolution.z]; -set(handles.axesFig,'DataAspectRatioMode','manual'); -if plane == 1 - res = [ratios(3) ratios(2)]./max([ratios(3) ratios(2)]); - set(handles.axesFig,'DataAspectRatio',[res 1]) -elseif plane == 2 % sagittal plane - res = [ratios(3) ratios(1)]./max([ratios(3) ratios(1)]); - set(handles.axesFig,'DataAspectRatio',[res 1]) -elseif plane == 3 % Axial plane - res = [ratios(2) ratios(1)]./max([ratios(2) ratios(1)]); - set(handles.axesFig,'DataAspectRatio',[res 1]) -end - - -%% profile plot -if get(handles.popupTypeOfPlot,'Value') == 2 && exist('Result','var') - % set SAD - fileName = [pln.radiationMode '_' pln.machine]; - try - load(fileName); - SAD = machine.meta.SAD; - catch - error(['Could not find the following machine file: ' fileName ]); - end - - % clear view and initialize some values - cla(handles.axesFig,'reset') - set(gca,'YDir','normal'); - ylabel('{\color{black}dose [Gy]}') - cColor={'black','green','magenta','cyan','yellow','red','blue'}; - - % Rotate the system into the beam. - % passive rotation & row vector multiplication & inverted rotation requires triple matrix transpose - rotMat_system_T = transpose(matRad_getRotationMatrix(pln.propStf.gantryAngles(handles.selectedBeam),pln.propStf.couchAngles(handles.selectedBeam))); - - if strcmp(handles.ProfileType,'longitudinal') - sourcePointBEV = [handles.profileOffset -SAD 0]; - targetPointBEV = [handles.profileOffset SAD 0]; - elseif strcmp(handles.ProfileType,'lateral') - sourcePointBEV = [-SAD handles.profileOffset 0]; - targetPointBEV = [ SAD handles.profileOffset 0]; - end - - rotSourcePointBEV = sourcePointBEV * rotMat_system_T; - rotTargetPointBEV = targetPointBEV * rotMat_system_T; - - % perform raytracing on the central axis of the selected beam, use unit - % electron density for plotting against the geometrical depth - [~,l,rho,~,ix] = matRad_siddonRayTracer(pln.propStf.isoCenter(handles.selectedBeam,:),ct.resolution,rotSourcePointBEV,rotTargetPointBEV,{0*ct.cubeHU{1}+1}); - d = [0 l .* rho{1}]; - % Calculate accumulated d sum. - vX = cumsum(d(1:end-1)); - - % this step is necessary if visualization is set to profile plot - % and another optimization is carried out - set focus on GUI - figHandles = get(0,'Children'); - idxHandle = []; - if ~isempty(figHandles) - v=version; - if str2double(v(1:3))>= 8.5 - idxHandle = strcmp({figHandles(:).Name},'matRadGUI'); - else - idxHandle = strcmp(get(figHandles,'Name'),'matRadGUI'); - end - end - figure(figHandles(idxHandle)); - - % plot physical dose - Content = get(handles.popupDisplayOption,'String'); - SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; - if sum(strcmp(SelectedCube,{'physicalDose','effect','RBExDose','alpha','beta','RBE'})) > 0 - Suffix = ''; - else - Idx = find(SelectedCube == '_'); - Suffix = SelectedCube(Idx:end); - end - - mPhysDose = Result.(['physicalDose' Suffix]); - PlotHandles{1} = plot(handles.axesFig,vX,mPhysDose(ix),'color',cColor{1,1},'LineWidth',3); hold on; - PlotHandles{1,2} ='physicalDose'; - ylabel(handles.axesFig,'dose in [Gy]'); - set(handles.axesFig,'FontSize',defaultFontSize); - - % plot counter - Cnt=2; - - if isfield(Result,['RBE' Suffix]) - - %disbale specific plots - %DispInfo{6,2}=0; - %DispInfo{5,2}=0; - %DispInfo{2,2}=0; - - % generate two lines for ylabel - StringYLabel1 = '\fontsize{8}{\color{red}RBE x dose [Gy(RBE)] \color{black}dose [Gy] '; - StringYLabel2 = ''; - for i=1:1:size(DispInfo,1) - if DispInfo{i,2} && sum(strcmp(DispInfo{i,1},{['effect' Suffix],['alpha' Suffix],['beta' Suffix]})) > 0 - %physicalDose is already plotted and RBExD vs RBE is plotted later with plotyy - if ~strcmp(DispInfo{i,1},['RBExDose' Suffix]) &&... - ~strcmp(DispInfo{i,1},['RBE' Suffix]) && ... - ~strcmp(DispInfo{i,1},['physicalDose' Suffix]) - - mCube = Result.([DispInfo{i,1}]); - PlotHandles{Cnt,1} = plot(handles.axesFig,vX,mCube(ix),'color',cColor{1,Cnt},'LineWidth',3);hold on; - PlotHandles{Cnt,2} = DispInfo{i,1}; - StringYLabel2 = [StringYLabel2 ' \color{' cColor{1,Cnt} '}' DispInfo{i,1} ' [' DispInfo{i,3} ']']; - Cnt = Cnt+1; - end - end - end - StringYLabel2 = [StringYLabel2 '}']; - % always plot RBExD against RBE - mRBExDose = Result.(['RBExDose' Suffix]); - vBED = mRBExDose(ix); - mRBE = Result.(['RBE' Suffix]); - vRBE = mRBE(ix); - - % plot biological dose against RBE - [ax, PlotHandles{Cnt,1}, PlotHandles{Cnt+1,1}]=plotyy(handles.axesFig,vX,vBED,vX,vRBE,'plot');hold on; - PlotHandles{Cnt,2}='RBExDose'; - PlotHandles{Cnt+1,2}='RBE'; - - % set plotyy properties - set(get(ax(2),'Ylabel'),'String','RBE [a.u.]','FontSize',8); - ylabel({StringYLabel1;StringYLabel2}) - set(PlotHandles{Cnt,1},'Linewidth',4,'color','r'); - set(PlotHandles{Cnt+1,1},'Linewidth',3,'color','b'); - set(ax(1),'ycolor','r') - set(ax(2),'ycolor','b') - set(ax,'FontSize',8); - Cnt=Cnt+2; - end - - % asses target coordinates - tmpPrior = intmax; - tmpSize = 0; - for i=1:size(cst,1) - if strcmp(cst{i,3},'TARGET') && tmpPrior >= cst{i,5}.Priority && tmpSize 0 - AllVarNames = evalin('base','who'); - if ismember('resultGUI',AllVarNames) - Result = evalin('base','resultGUI'); - end - - if ismember('stf',AllVarNames) - stf = evalin('base','stf'); - else - stf = []; - end - - ct = evalin('base','ct'); - cst = evalin('base','cst'); - pln = evalin('base','pln'); -end - -oldView = get(axesFig3D,'View'); - -cla(axesFig3D); -%delete(allchild(axesFig3D)); - -%test = allchild(axesFig3D); - -plane = get(handles.popupPlane,'Value'); -slice = round(get(handles.sliderSlice,'Value')); -defaultFontSize = 8; - -%Check if we need to precompute the surface data -if size(cst,2) < 8 - cst = matRad_computeAllVoiSurfaces(ct,cst); - assignin('base','cst',cst); -end - -set(fig3D,'Color',0.5*[1 1 1]); -set(axesFig3D,'Color',1*[0 0 0]); - -%% Plot 3D structures -hold(axesFig3D,'on'); -if get(handles.radiobtnContour,'Value') && handles.State>0 - voiPatches = matRad_plotVois3D(axesFig3D,ct,cst,handles.VOIPlotFlag,colorcube); -end - -%% plot the CT slice -if get(handles.radiobtnCT,'Value') - window = handles.dispWindow{2,1}; %(2 for ct) - ctMap = matRad_getColormap(handles.ctColorMap,handles.cMapSize); - ctHandle = matRad_plotCtSlice3D(axesFig3D,ct,1,plane,slice,ctMap,window); -end - -%% plot the dose slice -if handles.State >= 1 && exist('Result','var') - doseMap = matRad_getColormap(handles.doseColorMap,handles.cMapSize); - doseIx = 3; - % if the selected display option doesn't exist then simply display - % the first cube of the Result struct - if ~isfield(Result,handles.SelectedDisplayOption) - CubeNames = fieldnames(Result); - handles.SelectedDisplayOption = CubeNames{1,1}; - end - - dose = Result.(handles.SelectedDisplayOption); - - % dose colorwash - if ~isempty(dose) && ~isvector(dose) - - if isempty(handles.dispWindow{doseIx,2}) - handles.dispWindow{doseIx,2} = [min(dose(:)) max(dose(:))]; % set min and max dose values - end - - if get(handles.radiobtnDose,'Value') - [doseHandle,~,handles.dispWindow{doseIx,1}] = matRad_plotDoseSlice3D(axesFig3D,ct,dose,plane,slice,handles.CutOffLevel,handles.doseOpacity,doseMap,handles.dispWindow{doseIx,1}); - end - if get(handles.radiobtnIsoDoseLines,'Value') - matRad_plotIsoDoseLines3D(axesFig3D,ct,dose,handles.IsoDose.Contours,handles.IsoDose.Levels,plane,slice,doseMap,handles.dispWindow{doseIx,1},'LineWidth',1.5); - end - end -end - -if get(handles.radiobtnPlan,'Value') - matRad_plotPlan3D(axesFig3D,pln,stf); -end - -%hLight = light('Parent',axesFig3D); -%camlight(hLight,'left'); -%lighting('gouraud'); - -xlabel(axesFig3D,'x [voxels]','FontSize',defaultFontSize) -ylabel(axesFig3D,'y [voxels]','FontSize',defaultFontSize) -zlabel(axesFig3D,'z [voxels]','FontSize',defaultFontSize) -title(axesFig3D,'matRad 3D view'); - -% set axis ratio -ratios = [1 1 1]; %[1/ct.resolution.x 1/ct.resolution.y 1/ct.resolution.z]; -ratios = ratios([2 1 3]); -set(axesFig3D,'DataAspectRatioMode','manual'); -set(axesFig3D,'DataAspectRatio',ratios./max(ratios)); - -set(axesFig3D,'Ydir','reverse'); - -set(axesFig3D,'view',oldView); - - -% --- Executes on selection change in popupPlane. -function popupPlane_Callback(hObject, ~, handles) -% hObject handle to popupPlane (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: contents = cellstr(get(hObject,'String')) returns popupPlane contents as cell array -% contents{get(hObject,'Value')} returns selected item from popupPlane - -% set slice slider -handles.plane = get(handles.popupPlane,'value'); -try - if handles.State > 0 - ct = evalin('base', 'ct'); - set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... - 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); - if handles.State < 3 - set(handles.sliderSlice,'Value',round(ct.cubeDim(handles.plane)/2)); - else - pln = evalin('base','pln'); - - if handles.plane == 1 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,2)/ct.resolution.x)); - elseif handles.plane == 2 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,1)/ct.resolution.y)); - elseif handles.plane == 3 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,3)/ct.resolution.z)); - end - - end - end -catch -end - -handles.rememberCurrAxes = false; -UpdatePlot(handles); -handles.rememberCurrAxes = true; -guidata(hObject,handles); - -% --- Executes on slider movement. -function sliderSlice_Callback(~, ~, handles) -% hObject handle to sliderSlice (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'Value') returns position of slider -% get(hObject,'Min') and get(hObject,'Max') to determine range of slider -UpdatePlot(handles) - -% --- Executes on button press in radiobtnContour. -function radiobtnContour_Callback(~, ~, handles) -% hObject handle to radiobtnContour (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobtnContour -UpdatePlot(handles) - -% --- Executes on button press in radiobtnDose. -function radiobtnDose_Callback(~, ~, handles) -% hObject handle to radiobtnDose (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobtnDose -UpdatePlot(handles) - -% --- Executes on button press in radiobtnIsoDoseLines. -function radiobtnIsoDoseLines_Callback(~, ~, handles) -% hObject handle to radiobtnIsoDoseLines (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobtnIsoDoseLines -UpdatePlot(handles) - -% --- Executes on button press in btnOptimize. -function btnOptimize_Callback(hObject, eventdata, handles) -% hObject handle to btnOptimize (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -try - % indicate that matRad is busy - % change mouse pointer to hour glass - Figures = gcf;%findobj('type','figure'); - set(Figures, 'pointer', 'watch'); - drawnow; - % disable all active objects - InterfaceObj = findobj(Figures,'Enable','on'); - set(InterfaceObj,'Enable','off'); - % wait until the table is updated - btnTableSave_Callback([],[],handles); %We don't need it? - - - % if a critical change to the cst has been made which affects the dij matrix - if handles.DijCalcWarning == true - - choice = questdlg('Overlap priorites of OAR constraints have been edited, a new OAR VOI was added or a critical row constraint was deleted. A new Dij calculation might be necessary.', ... - 'Title','Cancel','Calculate Dij then Optimize','Optimze directly','Optimze directly'); - - switch choice - case 'Cancel' - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; - case 'Calculate dij again and optimize' - handles.DijCalcWarning = false; - btnCalcDose_Callback(hObject, eventdata, handles) - case 'Optimze directly' - handles.DijCalcWarning = false; - end - end - - pln = evalin('base','pln'); - ct = evalin('base','ct'); - - % optimize - if get(handles.radiobutton3Dconf,'Value') && strcmp(handles.Modalities{get(handles.popupRadMode,'Value')},'photons') - % conformal plan if photons and 3d conformal - if ~matRad_checkForConnectedBixelRows(evalin('base','stf')) - error('disconnetced dose influence data in BEV - run dose calculation again with consistent settings'); - end - [resultGUIcurrentRun,usedOptimizer] = matRad_fluenceOptimization(matRad_collapseDij(evalin('base','dij')),evalin('base','cst'),pln); - resultGUIcurrentRun.w = resultGUIcurrentRun.w * ones(evalin('base','dij.totalNumOfBixels'),1); - resultGUIcurrentRun.wUnsequenced = resultGUIcurrentRun.w; - else - if pln.propOpt.runDAO - if ~matRad_checkForConnectedBixelRows(evalin('base','stf')) - error('disconnetced dose influence data in BEV - run dose calculation again with consistent settings'); - end - end - - [resultGUIcurrentRun,usedOptimizer] = matRad_fluenceOptimization(evalin('base','dij'),evalin('base','cst'),pln); - end - - %if resultGUI already exists then overwrite the "standard" fields - AllVarNames = evalin('base','who'); - if ismember('resultGUI',AllVarNames) - resultGUI = evalin('base','resultGUI'); - sNames = fieldnames(resultGUIcurrentRun); - oldNames = fieldnames(resultGUI); - if(length(oldNames) > length(sNames)) - for j = 1:length(oldNames) - if strfind(oldNames{j}, 'beam') - resultGUI = rmfield(resultGUI, oldNames{j}); - end - end - end - for j = 1:length(sNames) - resultGUI.(sNames{j}) = resultGUIcurrentRun.(sNames{j}); - end - else - resultGUI = resultGUIcurrentRun; - end - assignin('base','resultGUI',resultGUI); - - % set some values - if handles.plane == 1 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,2)/ct.resolution.x)); - elseif handles.plane == 2 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,1)/ct.resolution.y)); - elseif handles.plane == 3 - set(handles.sliderSlice,'Value',ceil(pln.propStf.isoCenter(1,3)/ct.resolution.z)); - end - - handles.State = 3; - handles.SelectedDisplayOptionIdx = 1; - if strcmp(pln.radiationMode,'carbon') || (strcmp(pln.radiationMode,'protons') && strcmp(pln.propOpt.bioOptimization,'const_RBExD')) - handles.SelectedDisplayOption = 'RBExDose'; - else - handles.SelectedDisplayOption = 'physicalDose'; - end - handles.selectedBeam = 1; - % check IPOPT status and return message for GUI user if no DAO or - % particles - if ~pln.propOpt.runDAO || ~strcmp(pln.radiationMode,'photons') - CheckOptimizerStatus(usedOptimizer,'Fluence') - end - -catch ME - handles = showError(handles,'OptimizeCallback: Could not optimize!',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -% perform sequencing and DAO -try - - %% sequencing - if strcmp(pln.radiationMode,'photons') && (pln.propOpt.runSequencing || pln.propOpt.runDAO) - % resultGUI = matRad_xiaLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... - % ,get(handles.editSequencingLevel,'Value')); - % resultGUI = matRad_engelLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... - % ,str2double(get(handles.editSequencingLevel,'String'))); - resultGUI = matRad_siochiLeafSequencing(resultGUI,evalin('base','stf'),evalin('base','dij')... - ,str2double(get(handles.editSequencingLevel,'String'))); - - assignin('base','resultGUI',resultGUI); - end - -catch ME - handles = showError(handles,'OptimizeCallback: Could not perform sequencing',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -try - %% DAO - if strcmp(pln.radiationMode,'photons') && pln.propOpt.runDAO - handles = showWarning(handles,['Observe: You are running direct aperture optimization' filesep 'This is experimental code that has not been thoroughly debugged - especially in combination with constrained optimization.']); - [resultGUI,usedOptimizer] = matRad_directApertureOptimization(evalin('base','dij'),evalin('base','cst'),... - resultGUI.apertureInfo,resultGUI,pln); - assignin('base','resultGUI',resultGUI); - % check IPOPT status and return message for GUI user - CheckOptimizerStatus(usedOptimizer,'DAO'); - end - - if strcmp(pln.radiationMode,'photons') && (pln.propOpt.runSequencing || pln.propOpt.runDAO) - matRad_visApertureInfo(resultGUI.apertureInfo); - end - -catch ME - handles = showError(handles,'OptimizeCallback: Could not perform direct aperture optimization',ME); - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - guidata(hObject,handles); - return; -end - -% change state from busy to normal -set(Figures, 'pointer', 'arrow'); -set(InterfaceObj,'Enable','on'); -handles.dispWindow{3,1} = []; % reset dose ranges -handles.dispWindow{3,2} = []; % reset min max dose values -handles.rememberCurrAxes = false; -handles.IsoDose.Levels = 0; % ensure to use default iso dose line spacing -handles.cBarChanged = true; - -guidata(hObject,handles); -handles = updateIsoDoseLineCache(handles); -UpdateState(handles); -UpdatePlot(handles); -handles.rememberCurrAxes = true; -guidata(hObject,handles); - - -% the function CheckValidityPln checks if the provided plan is valid so -% that it can be used further on for optimization -function FlagValid = CheckValidityPln(cst) - -FlagValid = true; -%check if mean constraint is always used in combination -for i = 1:size(cst,1) - if ~isempty(cst{i,6}) - if ~isempty(strfind([cst{i,6}.type],'mean')) && isempty(strfind([cst{i,6}.type],'square')) - FlagValid = false; - warndlg('mean constraint needs to be defined in addition to a second constraint (e.g. squared deviation)'); - break - end - end -end - - -% --- Executes on selection change in popupTypeOfPlot -function popupTypeOfPlot_Callback(hObject, ~, handles) - - % intensity plot -if get(hObject,'Value') == 1 - - set(handles.sliderBeamSelection,'Enable','off') - set(handles.sliderOffset,'Enable','off') - set(handles.popupDisplayOption,'Enable','on') - set(handles.btnProfileType,'Enable','off'); - set(handles.popupPlane,'Enable','on'); - set(handles.radiobtnCT,'Enable','on'); - set(handles.radiobtnContour,'Enable','on'); - set(handles.radiobtnDose,'Enable','on'); - set(handles.radiobtnIsoDoseLines,'Enable','on'); - set(handles.radiobtnIsoDoseLinesLabels,'Enable','on'); - set(handles.sliderSlice,'Enable','on'); - -% profile plot -elseif get(hObject,'Value') == 2 - - if handles.State > 0 - if length(parseStringAsNum(get(handles.editGantryAngle,'String'),true)) > 1 - - set(handles.sliderBeamSelection,'Enable','on'); - handles.selectedBeam = 1; - pln = evalin('base','pln'); - set(handles.sliderBeamSelection,'Min',handles.selectedBeam,'Max',pln.propStf.numOfBeams,... - 'Value',handles.selectedBeam,... - 'SliderStep',[1/(pln.propStf.numOfBeams-1) 1/(pln.propStf.numOfBeams-1)],... - 'Enable','on'); - - else - handles.selectedBeam = 1; - end - - handles.profileOffset = get(handles.sliderOffset,'Value'); - - vMinMax = [-100 100]; - vRange = sum(abs(vMinMax)); - - ct = evalin('base','ct'); - if strcmp(get(handles.btnProfileType,'String'),'lateral') - SliderStep = vRange/ct.resolution.x; - else - SliderStep = vRange/ct.resolution.y; - end - - set(handles.sliderOffset,'Min',vMinMax(1),'Max',vMinMax(2),... - 'Value',handles.profileOffset,... - 'SliderStep',[1/SliderStep 1/SliderStep],... - 'Enable','on'); - end - - - set(handles.popupDisplayOption,'Enable','on'); - set(handles.btnProfileType,'Enable','on'); - set(handles.popupPlane,'Enable','off'); - set(handles.radiobtnCT,'Enable','off'); - set(handles.radiobtnContour,'Enable','off'); - set(handles.radiobtnDose,'Enable','off'); - set(handles.radiobtnIsoDoseLines,'Enable','off'); - set(handles.sliderSlice,'Enable','off'); - set(handles.radiobtnIsoDoseLinesLabels,'Enable','off'); - - - set(handles.btnProfileType,'Enable','on') - - if strcmp(get(handles.btnProfileType,'String'),'lateral') - handles.ProfileType = 'longitudinal'; - else - handles.ProfileType = 'lateral'; - end - -end - -handles.cBarChanged = true; - -handles.rememberCurrAxes = false; -cla(handles.axesFig,'reset'); -UpdatePlot(handles); -handles.rememberCurrAxes = true; -guidata(hObject, handles); - -% --- Executes on selection change in popupDisplayOption. -function popupDisplayOption_Callback(hObject, ~, handles) -content = get(hObject,'String'); -handles.SelectedDisplayOption = content{get(hObject,'Value'),1}; -handles.SelectedDisplayOptionIdx = get(hObject,'Value'); -%handles.dispWindow{3,1} = []; handles.dispWindow{3,2} = []; - -if ~isfield(handles,'colormapLocked') || ~handles.colormapLocked - handles.dispWindow{3,1} = []; handles.dispWindow{3,2} = []; -end - -handles = updateIsoDoseLineCache(handles); -handles.cBarChanged = true; -guidata(hObject, handles); -UpdatePlot(handles); -guidata(hObject, handles); - -% --- Executes on slider movement. -function sliderBeamSelection_Callback(hObject, ~, handles) -% hObject handle to sliderBeamSelection (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'Value') returns position of slider -% get(hObject,'Min') and get(hObject,'Max') to determine range of slider - - -handles.selectedBeam = round(get(hObject,'Value')); -set(hObject, 'Value', handles.selectedBeam); -handles.rememberCurrAxes = false; -UpdatePlot(handles); -handles.rememberCurrAxes = true; -guidata(hObject,handles); - -% --- Executes on button press in btnProfileType. -function btnProfileType_Callback(hObject, ~, handles) -% hObject handle to btnProfileType (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -if strcmp(get(hObject,'Enable') ,'on') - if strcmp(handles.ProfileType,'lateral') - handles.ProfileType = 'longitudinal'; - set(hObject,'String','lateral'); - else - handles.ProfileType = 'lateral'; - set(hObject,'String','longitudinal'); - end - - handles.rememberCurrAxes = false; - UpdatePlot(handles); - handles.rememberCurrAxes = true; - - guidata(hObject, handles); - -end - - - -function Flag = getCstTable (handles) - -data = get(handles.uiTable,'Data'); -OldCst = evalin('base','cst'); -NewCst=[]; -Cnt=1; -FlagValidParameters = true; - -%% generate new cst from GUI -for i = 1:size(OldCst,1) - CntObjF = 1; - FlagFound = false; - for j = 1:size(data,1) - - if strcmp(OldCst{i,2},data{j,1}) - FlagFound = true; - - if CntObjF == 1 - %VOI - if isempty(data{j,1}) || ~isempty(strfind(data{j,1}, 'Select')) - FlagValidParameters=false; - else - NewCst{Cnt,1}=data{j,1}; - end - %VOI Type - if isempty(data{j,2})|| ~isempty(strfind(data{j,2}, 'Select')) - FlagValidParameters=false; - else - NewCst{Cnt,2}=data{j,2}; - end - %Priority - if isempty(data{j,3}) - FlagValidParameters=false; - else - NewCst{Cnt,3}=data{j,3}; - end - end - - % Obj Func / constraint - if isempty(data{j,4}) ||~isempty(strfind(data{j,4}, 'Select')) - FlagValidParameters=false; - else - NewCst{Cnt,4}(CntObjF,1).type = data{j,4}; - end - - % get further parameter - if FlagValidParameters - - NewCst{Cnt,4}(CntObjF,1).dose = data{j,6}; - NewCst{Cnt,4}(CntObjF,1).penalty = data{j,5}; - NewCst{Cnt,4}(CntObjF,1).EUD = data{j,7}; - NewCst{Cnt,4}(CntObjF,1).volume = data{j,8}; - NewCst{Cnt,4}(CntObjF,1).robustness = data{j,9}; - - end - - CntObjF = CntObjF+1; - - end - - end - - if FlagFound == true - Cnt = Cnt +1; - end - -end - -if FlagValidParameters - - for m=1:size(OldCst,1) - VOIexist = OldCst(m,2); - boolChanged = false; - - for n = 1:size(NewCst,1) - - VOIGUI = NewCst(n,1); - - if strcmp(VOIexist,VOIGUI) - % overite existing objectives - boolChanged = true; - OldCst(m,6) = NewCst(n,4); - OldCst(m,3) = NewCst(n,2); - OldCst{m,5}.Priority = NewCst{n,3}; - break; - end - end - - if ~boolChanged - OldCst{m,6}=[]; - end - - end - assignin('base','cst',OldCst); - Flag = true; - -else - warndlg('not all values are set - cannot start dose calculation'); - Flag = false; -end - - -% --- Executes on button press in btnuiTableAdd. -function btnuiTableAdd_Callback(hObject, ~, handles) -% hObject handle to btnuiTableAdd (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -data = get(handles.uiTable, 'data'); -sEnd = size(data,1); -data{sEnd+1,1} = 'Select VOI'; -data{sEnd+1,2} = 'Select VOI Type'; -data{sEnd+1,4} = 'Select obj func/constraint'; -data{sEnd+1,9} = 'none'; - -set(handles.uiTable,'data',data); - -%handles.State=1; -guidata(hObject,handles); -UpdateState(handles); - - -% --- Executes on button press in btnuiTableDel. -function btnuiTableDel_Callback(hObject, eventdata, handles) -% hObject handle to btnuiTableDel (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -data = get(handles.uiTable, 'data'); -Index = get(handles.uiTable,'UserData'); -mask = (1:size(data,1))'; -mask(Index(:,1))=[]; -cst = evalin('base','cst'); -% if all rows have been deleted or a target voi was removed -if size(data,1)==1 || strcmp(data(Index(1),2),'TARGET') - handles.State=1; -end - -try - Idx = find(strcmp(cst(:,2),data(Index(1),1))); - % if OAR was removed then show a warning - if strcmp(data(Index(1),2),'OAR') && length(cst{Idx,6})<=1 - handles.DijCalcWarning =true; - end -catch -end -data=data(mask,:); -set(handles.uiTable,'data',data); -guidata(hObject,handles); -UpdateState(handles); -btnTableSave_Callback(hObject, eventdata, handles); - -% --- Executes when selected cell(s) is changed in uiTable. -function uiTable_CellSelectionCallback(hObject, eventdata, ~) -% hObject handle to uiTable (see GCBO) -% eventdata structure with the following fields (see MATLAB.UI.CONTROL.TABLE) -% Indices: row and column indices of the cell(s) currently selecteds -% handles structure with handles and user data (see GUIDATA) -index = eventdata.Indices; - if any(index) %loop necessary to surpress unimportant errors. - set(hObject,'UserData',index); - end - - -% --- Executes when entered data in editable cell(s) in uiTable. -function uiTable_CellEditCallback(hObject, eventdata, handles) -% hObject handle to uiTable (see GCBO) -% eventdata structure with the following fields (see MATLAB.UI.CONTROL.TABLE) -% Indices: row and column indices of the cell(s) edited -% PreviousData: previous data for the cell(s) edited -% EditData: string(s) entered by the user -% NewData: EditData or its converted form set on the Data property. Empty if Data was not changed -% Error: error string when failed to convert EditData to appropriate value for Data -% handles structure with handles and user data (see GUIDATA) - -Placeholder = NaN; -PlaceholderRob = 'none'; - -% get table data and current index of cell -if isempty(eventdata) - data = get(handles.uiTable,'Data'); - Index = get(handles.uiTable,'UserData'); - - if ~isempty(Index) && size(Index,1)==1 - % if this callback was invoked by calculate dij button, eventdata is empty - % and needs to be set manually - try - % if row gots deleted then index is pointing to non existing - % data - if size(data,1) check if objective function still makes sense -if eventdata.Indices(2) == 2 - - if strcmp(eventdata.NewData,'OAR') - - if sum(strcmp({'square deviation','square underdosing'},data{eventdata.Indices(1),4}))>0 - data{eventdata.Indices(1),4} = 'square overdosing'; - end - - else - - if sum(strcmp({'EUD','mean'},data{eventdata.Indices(1),4}))>0 - data{eventdata.Indices(1),4} = 'square deviation'; - end - - end -end -%% if objective function was changed -> check if VOI Type still makes sense -if eventdata.Indices(2) == 4 - ObjFunction = eventdata.NewData; -else - ObjFunction = data{eventdata.Indices(1),4}; -end - - -if eventdata.Indices(2) == 4 - if sum(strcmp(eventdata.NewData,{'square deviation','square underdosing','min dose constraint',... - 'min mean dose constraint','min DVH constraint','min DVH objective'})) > 0 - - if strcmp('OAR',data{eventdata.Indices(1),2}) - data{eventdata.Indices(1),4} = 'square overdosing'; - ObjFunction = 'square overdosing'; - if isnan(data{eventdata.Indices(1),5}) - data{eventdata.Indices(1),5} = 1; - end - end - - tmpDose = parseStringAsNum(data{eventdata.Indices(1),6},true); - if numel(tmpDose) == 2 - data{eventdata.Indices(1),6} = num2str(tmpDose(1)); - end - - elseif strcmp(eventdata.NewData,'mean') - - if strcmp('TARGET',data{eventdata.Indices(1),2}) - data{eventdata.Indices(1),4} = 'square deviation'; - end - - end -end - -%% set fields to NaN according to objective function - -if sum(strcmp(ObjFunction, {'square underdosing','square overdosing','square deviation'})) > 0 - - for k = [5 6] - if isnan(data{eventdata.Indices(1),k}) - data{eventdata.Indices(1),k} = 1; - end - end - data{eventdata.Indices(1),7} = Placeholder; - data{eventdata.Indices(1),8} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif strcmp(ObjFunction,'mean') - - if isnan(data{eventdata.Indices(1),5}) - data{eventdata.Indices(1),5} = 1; - end - data{eventdata.Indices(1),6} = Placeholder; - data{eventdata.Indices(1),7} = Placeholder; - data{eventdata.Indices(1),8} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif strcmp(ObjFunction,'EUD') - - for k = [5 7] - if isnan(data{eventdata.Indices(1),k}) - data{eventdata.Indices(1),k} = 1; - end - end - data{eventdata.Indices(1),6} = Placeholder; - data{eventdata.Indices(1),8} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif sum(strcmp(ObjFunction,{'min dose constraint','max dose constraint'... - 'min mean dose constraint','max mean dose constraint'}))> 0 - - if isnan(data{eventdata.Indices(1),6}) - data{eventdata.Indices(1),6} = 1; - end - data{eventdata.Indices(1),5} = Placeholder; - data{eventdata.Indices(1),7} = Placeholder; - data{eventdata.Indices(1),8} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif sum(strcmp(ObjFunction,{'min EUD constraint','max EUD constraint'}) ) > 0 - - if isnan(data{eventdata.Indices(1),7}) - data{eventdata.Indices(1),7} = 1; - end - data{eventdata.Indices(1),5} = Placeholder; - data{eventdata.Indices(1),6} = Placeholder; - data{eventdata.Indices(1),8} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif sum(strcmp(ObjFunction,{'min DVH constraint','max DVH constraint'}) ) > 0 - - for k = [6 8] - if isnan(data{eventdata.Indices(1),k}) - data{eventdata.Indices(1),k} = 1; - end - end - data{eventdata.Indices(1),5} = Placeholder; - data{eventdata.Indices(1),7} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -elseif sum(strcmp(ObjFunction,{'min DVH objective','max DVH objective'}) ) > 0 - - for k = [5 6 8] - if isnan(data{eventdata.Indices(1),k}) - data{eventdata.Indices(1),k} = 1; - end - end - data{eventdata.Indices(1),7} = Placeholder; - data{eventdata.Indices(1),9} = PlaceholderRob; - -end - -%% check if input is a valid -%check if overlap, penalty and and parameters are numbers -if (eventdata.Indices(2) == 3 || eventdata.Indices(2) == 5 || eventdata.Indices(2) == 6 || eventdata.Indices(2) == 7 || eventdata.Indices(2) == 8) ... - && ~isempty(eventdata.NewData) - if CheckValidity(eventdata.NewData) == false - data{eventdata.Indices(1),eventdata.Indices(2)} = eventdata.PreviousData; - end -end - - -%% if VOI was changed then change VOI type and overlap according to new VOI -if eventdata.Indices(2) == 1 && eventdata.Indices(1) == size(data,1) - for i = 1:size(data,1) - if strcmp(eventdata.NewData,data{i,1}) - data{eventdata.Indices(1),2}=data{i,2}; - data{eventdata.Indices(1),3}=data{i,3}; - end - end - -end - -%% set VOI type and priority according to existing definitions -for i=1:size(data,1) - if i~=eventdata.Indices(1) && strcmp(data(i,1),data(eventdata.Indices(1))) - data{i,2} = data{eventdata.Indices(1),2}; - data{i,3} = data{eventdata.Indices(1),3}; - end -end - - -if isnan(eventdata.NewData) - data{eventdata.Indices(1),eventdata.Indices(2)} = eventdata.PreviousData; -end - - -set(handles.txtInfo,'String','plan changed'); -set(handles.uiTable,'data',data); -guidata(hObject, handles); -UpdateState(handles); - -% enables/ disables buttons according to the current state -function UpdateState(handles) - -if handles.State > 0 - pln = evalin('base','pln'); - - if strcmp(pln.radiationMode,'carbon') - set(handles.popMenuBioOpt,'Enable','on'); - set(handles.btnSetTissue,'Enable','on'); - elseif strcmp(pln.radiationMode,'protons') - set(handles.popMenuBioOpt,'Enable','on'); - set(handles.btnSetTissue,'Enable','off'); - else - set(handles.popMenuBioOpt,'Enable','off'); - set(handles.btnSetTissue,'Enable','off'); - end - - cMapControls = allchild(handles.uipanel_colormapOptions); - for runHandles = cMapControls - set(runHandles,'Enable','on'); - end -end - -if handles.cubeHUavailable - cMapOptionsSelectList = {'None','CT (HU)','Result (i.e. dose)'}; - set(handles.popupmenu_windowPreset,'Visible','on'); - set(handles.text_windowPreset,'String','Window Preset'); -else - cMapOptionsSelectList = {'None','CT (ED)','Result (i.e. dose)'}; - set(handles.popupmenu_windowPreset,'Visible','off'); - set(handles.text_windowPreset,'String','No available Window Presets'); -end -handles.cBarChanged = true; - - switch handles.State - - case 0 - - set(handles.txtInfo,'String','no data loaded'); - set(handles.btnCalcDose,'Enable','off'); - set(handles.btnOptimize ,'Enable','off'); - set(handles.pushbutton_recalc,'Enable','off'); - set(handles.btnSaveToGUI,'Enable','off'); - set(handles.btnDVH,'Enable','off'); - set(handles.importDoseButton,'Enable','off'); - set(handles.btn_export,'Enable','off'); - set(handles.btn3Dview,'Enable','off'); - - cMapControls = allchild(handles.uipanel_colormapOptions); - for runHandles = cMapControls - set(runHandles,'Enable','off'); - end - - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList{1}) - set(handles.popupmenu_chooseColorData,'Value',1); - - case 1 - - set(handles.txtInfo,'String','ready for dose calculation'); - set(handles.btnCalcDose,'Enable','on'); - set(handles.btnOptimize ,'Enable','off'); - set(handles.pushbutton_recalc,'Enable','off'); - set(handles.btnSaveToGUI,'Enable','off'); - set(handles.btnDVH,'Enable','off'); - set(handles.importDoseButton,'Enable','off'); - set(handles.btn_export,'Enable','on'); - set(handles.btn3Dview,'Enable','on'); - - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:2)) - set(handles.popupmenu_chooseColorData,'Value',2); - AllVarNames = evalin('base','who'); - if ~isempty(AllVarNames) - if ismember('resultGUI',AllVarNames) - set(handles.pushbutton_recalc,'Enable','on'); - set(handles.btnSaveToGUI,'Enable','on'); - set(handles.btnDVH,'Enable','on'); - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) - set(handles.popupmenu_chooseColorData,'Value',3); - end - end - - case 2 - - set(handles.txtInfo,'String','ready for optimization'); - set(handles.btnCalcDose,'Enable','on'); - set(handles.btnOptimize ,'Enable','on'); - set(handles.pushbutton_recalc,'Enable','off'); - set(handles.btnSaveToGUI,'Enable','off'); - set(handles.btnDVH,'Enable','off'); - set(handles.importDoseButton,'Enable','off'); - set(handles.btn_export,'Enable','on'); - set(handles.btn3Dview,'Enable','on'); - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:2)) - set(handles.popupmenu_chooseColorData,'Value',2); - AllVarNames = evalin('base','who'); - - if ~isempty(AllVarNames) - if ismember('resultGUI',AllVarNames) - set(handles.pushbutton_recalc,'Enable','on'); - set(handles.btnSaveToGUI,'Enable','on'); - set(handles.btnDVH,'Enable','on'); - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) - set(handles.popupmenu_chooseColorData,'Value',3); - end - end - - case 3 - set(handles.txtInfo,'String','plan is optimized'); - set(handles.btnCalcDose,'Enable','on'); - set(handles.btnOptimize ,'Enable','on'); - set(handles.pushbutton_recalc,'Enable','on'); - set(handles.btnSaveToGUI,'Enable','on'); - set(handles.btnDVH,'Enable','on'); - set(handles.btn_export,'Enable','on'); - set(handles.btn3Dview,'Enable','on'); - % resultGUI struct needs to be available to import dose - % otherwise inconsistent states can be achieved - set(handles.importDoseButton,'Enable','on'); - set(handles.popupmenu_chooseColorData,'String',cMapOptionsSelectList(1:3)) - set(handles.popupmenu_chooseColorData,'Value',3); - end - -guidata(handles.figure1,handles); - -% fill GUI elements with plan information -function setPln(handles) -pln = evalin('base','pln'); -% sanity check of isoCenter -if size(pln.propStf.isoCenter,1) ~= pln.propStf.numOfBeams && size(pln.propStf.isoCenter,1) == 1 - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * pln.propStf.isoCenter(1,:); -elseif size(pln.propStf.isoCenter,1) ~= pln.propStf.numOfBeams && size(pln.propStf.isoCenter,1) ~= 1 - error('Isocenter in plan file are incosistent.'); -end -set(handles.editBixelWidth,'String',num2str(pln.propStf.bixelWidth)); -set(handles.editFraction,'String',num2str(pln.numOfFractions)); - -if isfield(pln.propStf,'isoCenter') - if size(unique(pln.propStf.isoCenter,'rows'),1) == 1 - set(handles.editIsoCenter,'String',regexprep(num2str((round(pln.propStf.isoCenter(1,:)*10))./10), '\s+', ' ')); - set(handles.editIsoCenter,'Enable','on'); - set(handles.checkIsoCenter,'Enable','on'); - else - set(handles.editIsoCenter,'String','multiple isoCenter'); - set(handles.editIsoCenter,'Enable','off'); - set(handles.checkIsoCenter,'Value',0); - set(handles.checkIsoCenter,'Enable','off'); - end -end -set(handles.editGantryAngle,'String',num2str((pln.propStf.gantryAngles))); -set(handles.editCouchAngle,'String',num2str((pln.propStf.couchAngles))); -set(handles.popupRadMode,'Value',find(strcmp(get(handles.popupRadMode,'String'),pln.radiationMode))); -set(handles.popUpMachine,'Value',find(strcmp(get(handles.popUpMachine,'String'),pln.machine))); - -if ~strcmp(pln.propOpt.bioOptimization,'none') - set(handles.popMenuBioOpt,'Enable','on'); - contentPopUp = get(handles.popMenuBioOpt,'String'); - ix = find(strcmp(pln.propOpt.bioOptimization,contentPopUp)); - set(handles.popMenuBioOpt,'Value',ix); - set(handles.btnSetTissue,'Enable','on'); -else - set(handles.popMenuBioOpt,'Enable','off'); - set(handles.btnSetTissue,'Enable','off'); -end -%% enable sequencing and DAO button if radiation mode is set to photons -if strcmp(pln.radiationMode,'photons') && pln.propOpt.runSequencing - set(handles.btnRunSequencing,'Enable','on'); - set(handles.btnRunSequencing,'Value',1); -elseif strcmp(pln.radiationMode,'photons') && ~pln.propOpt.runSequencing - set(handles.btnRunSequencing,'Enable','on'); - set(handles.btnRunSequencing,'Value',0); -else - set(handles.btnRunSequencing,'Enable','off'); -end -%% enable DAO button if radiation mode is set to photons -if strcmp(pln.radiationMode,'photons') && pln.propOpt.runDAO - set(handles.btnRunDAO,'Enable','on'); - set(handles.btnRunDAO,'Value',1); -elseif strcmp(pln.radiationMode,'photons') && ~pln.propOpt.runDAO - set(handles.btnRunDAO,'Enable','on'); - set(handles.btnRunDAO,'Value',0); -else - set(handles.btnRunDAO,'Enable','off'); -end -%% enable stratification level input if radiation mode is set to photons -if strcmp(pln.radiationMode,'photons') - set(handles.txtSequencing,'Enable','on'); - set(handles.radiobutton3Dconf,'Enable','on'); - set(handles.editSequencingLevel,'Enable','on'); -else - set(handles.txtSequencing,'Enable','off'); - set(handles.radiobutton3Dconf,'Enable','off'); - set(handles.editSequencingLevel,'Enable','off'); -end - -% --- Executes on button press in btnTableSave. -function btnTableSave_Callback(~, ~, handles) -% hObject handle to btnTableSave (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -%getCstTable(handles); -if get(handles.checkIsoCenter,'Value') - pln = evalin('base','pln'); - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); - set(handles.editIsoCenter,'String',regexprep(num2str((round(pln.propStf.isoCenter(1,:) * 10))./10), '\s+', ' ')); - assignin('base','pln',pln); -end -getPlnFromGUI(handles); - -% --- Executes on selection change in listBoxCmd. -function listBoxCmd_Callback(hObject, ~, ~) -numLines = size(get(hObject,'String'),1); -set(hObject, 'ListboxTop', numLines); - -% --- Executes on slider movement. -function sliderOffset_Callback(hObject, ~, handles) -handles.profileOffset = get(hObject,'Value'); -UpdatePlot(handles); - - -%% HELPER FUNCTIONS -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - -% check validity of input for cst -function flagValidity = CheckValidity(Val) - -flagValidity = true; - -if ischar(Val) - Val = str2num(Val); -end - -if length(Val) > 2 - warndlg('invalid input!'); -end - -if isempty(Val) - warndlg('Input not a number!'); - flagValidity = false; -end - -if any(Val < 0) - warndlg('Input not a positive number!'); - flagValidity = false; -end - -% return IPOPT status as message box -function CheckOptimizerStatus(usedOptimizer,OptCase) - -[statusmsg,statusflag] = usedOptimizer.GetStatus(); - -if statusflag == 0 || statusflag == 1 - status = 'none'; -else - status = 'warn'; -end - -msgbox(['Optimizer finished with status ' num2str(statusflag) ' (' statusmsg ')'],'Optimizer',status,'modal'); - -% get pln file form GUI -function getPlnFromGUI(handles) - -% evalin pln (if existant) in order to decide whether isoCenter should be calculated -% automatically -if evalin('base','exist(''pln'',''var'')') - pln = evalin('base','pln'); -end - -pln.propStf.bixelWidth = parseStringAsNum(get(handles.editBixelWidth,'String'),false); % [mm] / also corresponds to lateral spot spacing for particles -pln.propStf.gantryAngles = parseStringAsNum(get(handles.editGantryAngle,'String'),true); % [???] -pln.propStf.couchAngles = parseStringAsNum(get(handles.editCouchAngle,'String'),true); % [???] -pln.propStf.numOfBeams = numel(pln.propStf.gantryAngles); -try - ct = evalin('base','ct'); - pln.numOfVoxels = prod(ct.cubeDim); - pln.voxelDimensions = ct.cubeDim; -catch -end -pln.numOfFractions = parseStringAsNum(get(handles.editFraction,'String'),false); -contents = get(handles.popupRadMode,'String'); -pln.radiationMode = contents{get(handles.popupRadMode,'Value')}; % either photons / protons / carbon -contents = get(handles.popUpMachine,'String'); -pln.machine = contents{get(handles.popUpMachine,'Value')}; - -if (~strcmp(pln.radiationMode,'photons')) - contentBioOpt = get(handles.popMenuBioOpt,'String'); - pln.propOpt.bioOptimization = contentBioOpt{get(handles.popMenuBioOpt,'Value'),:}; -else - pln.propOpt.bioOptimization = 'none'; -end - -pln.propOpt.runSequencing = logical(get(handles.btnRunSequencing,'Value')); -pln.propOpt.runDAO = logical(get(handles.btnRunDAO,'Value')); - -try - cst = evalin('base','cst'); - if (sum(strcmp('TARGET',cst(:,3))) > 0 && get(handles.checkIsoCenter,'Value')) || ... - (sum(strcmp('TARGET',cst(:,3))) > 0 && ~isfield(pln.propStf,'isoCenter')) - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * matRad_getIsoCenter(cst,ct); - set(handles.checkIsoCenter,'Value',1); - else - if ~strcmp(get(handles.editIsoCenter,'String'),'multiple isoCenter') - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1) * str2num(get(handles.editIsoCenter,'String')); - end - end -catch - warning('couldnt set isocenter in getPln function') -end - -handles.pln = pln; -assignin('base','pln',pln); - -% parsing a string as number array -function number = parseStringAsNum(stringIn,isVector) -if isnumeric(stringIn) - number = stringIn; -else - number = str2num(stringIn); - if isempty(number) || length(number) > 1 && ~isVector - warndlg(['could not parse all parameters (pln, optimization parameter)']); - number = NaN; - elseif isVector && iscolumn(number) - number = number'; - end -end - - -% show error -function handles = showError(handles,Message,ME) - -if nargin == 3 - %Add exception message - if isfield(handles,'devMode') && handles.devMode - meType = 'extended'; - else - meType = 'basic'; - end - Message = {Message,ME.getReport(meType,'hyperlinks','off')}; -end - -if isfield(handles,'ErrorDlg') - if ishandle(handles.ErrorDlg) - close(handles.ErrorDlg); - end -end -handles.ErrorDlg = errordlg(Message); - -% show warning -function handles = showWarning(handles,Message,ME) - -if nargin == 3 - %Add exception message - if isfield(handles,'devMode') && handles.devMode - meType = 'extended'; - else - meType = 'basic'; - end - Message = {Message,ME.getReport(meType,'hyperlinks','off')}; -end - -if isfield(handles,'WarnDlg') - if ishandle(handles.WarnDlg) - close(handles.WarnDlg); - end -end -handles.WarnDlg = warndlg(Message); - -% check for valid machine data input file -function flag = checkRadiationComposition(handles) -flag = true; -contents = cellstr(get(handles.popUpMachine,'String')); -Machine = contents{get(handles.popUpMachine,'Value')}; -contents = cellstr(get(handles.popupRadMode,'String')); -radMod = contents{get(handles.popupRadMode,'Value')}; - -if isdeployed - FoundFile = dir([ctfroot filesep 'matRad' filesep radMod '_' Machine '.mat']); -else - FoundFile = dir([fileparts(mfilename('fullpath')) filesep radMod '_' Machine '.mat']); -end -if isempty(FoundFile) - warndlg(['No base data available for machine: ' Machine]); - flag = false; -end - -function matRadScrollWheelFcn(src,event) - -% get handles -handles = guidata(src); - -% compute new slice -currSlice = round(get(handles.sliderSlice,'Value')); -newSlice = currSlice - event.VerticalScrollCount; - -% project to allowed set -newSlice = min(newSlice,get(handles.sliderSlice,'Max')); -newSlice = max(newSlice,get(handles.sliderSlice,'Min')); - -% update slider -set(handles.sliderSlice,'Value',newSlice); - -% update handles object -guidata(src,handles); - -% update plot -UpdatePlot(handles); - - - - -%% CALLBACKS -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - -% button: show DVH -function btnDVH_Callback(~, ~, handles) - -resultGUI = evalin('base','resultGUI'); -Content = get(handles.popupDisplayOption,'String'); -SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; - -pln = evalin('base','pln'); -resultGUI_SelectedCube.physicalDose = resultGUI.(SelectedCube); - -if ~strcmp(pln.propOpt.bioOptimization,'none') - - %check if one of the default fields is selected - if sum(strcmp(SelectedCube,{'physicalDose','effect','RBE,','RBExDose','alpha','beta'})) > 0 - resultGUI_SelectedCube.physicalDose = resultGUI.physicalDose; - resultGUI_SelectedCube.RBExDose = resultGUI.RBExDose; - else - Idx = find(SelectedCube == '_'); - SelectedSuffix = SelectedCube(Idx(1):end); - resultGUI_SelectedCube.physicalDose = resultGUI.(['physicalDose' SelectedSuffix]); - resultGUI_SelectedCube.RBExDose = resultGUI.(['RBExDose' SelectedSuffix]); - end -end - -%adapt visibilty -cst = evalin('base','cst'); -for i = 1:size(cst,1) - cst{i,5}.Visible = handles.VOIPlotFlag(i); -end - -matRad_indicatorWrapper(cst,pln,resultGUI_SelectedCube); - -assignin('base','cst',cst); - -% radio button: plot isolines labels -function radiobtnIsoDoseLinesLabels_Callback(~, ~, handles) -UpdatePlot(handles); - -% button: refresh -function btnRefresh_Callback(hObject, ~, handles) - -handles = resetGUI(hObject, handles); - -%% parse variables from base workspace -AllVarNames = evalin('base','who'); -handles.AllVarNames = AllVarNames; -try - if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - ct = evalin('base','ct'); - cst = evalin('base','cst'); - %cst = setCstTable(handles,cst); - generateCstTable(handles,cst); - handles.State = 1; - cst = matRad_computeVoiContoursWrapper(cst,ct); - assignin('base','cst',cst); - elseif ismember('ct',AllVarNames) && ~ismember('cst',AllVarNames) - handles = showError(handles,'GUI OpeningFunc: could not find cst file'); - elseif ~ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - handles = showError(handles,'GUI OpeningFunc: could not find ct file'); - end -catch - handles = showError(handles,'GUI OpeningFunc: Could not load ct and cst file'); -end - -if ismember('ct',AllVarNames) && ismember('cst',AllVarNames) - handles = reloadGUI(hObject, handles, ct, cst); -else - handles = reloadGUI(hObject, handles); -end -guidata(hObject, handles); - - -% text box: # fractions -function editFraction_Callback(hObject, ~, handles) -getPlnFromGUI(handles); -guidata(hObject,handles); - -% text box: stratification levels -function editSequencingLevel_Callback(~, ~, ~) - -% text box: isoCenter in [mm] -function editIsoCenter_Callback(hObject, ~, handles) - -pln = evalin('base','pln'); -tmpIsoCenter = str2num(get(hObject,'String')); - -if length(tmpIsoCenter) == 3 - if sum(any(unique(pln.propStf.isoCenter,'rows')~=tmpIsoCenter)) - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*tmpIsoCenter; - handles.State = 1; - UpdateState(handles); - end -else - handles = showError(handles,'EditIsoCenterCallback: Could not set iso center'); -end - -assignin('base','pln',pln); -guidata(hObject,handles); - -% check box: iso center auto -function checkIsoCenter_Callback(hObject, ~, handles) - -W = evalin('base','whos'); -doesPlnExist = ismember('pln',{W(:).name}); - -if get(hObject,'Value') && doesPlnExist - pln = evalin('base','pln'); - if ~isfield(pln.propStf,'isoCenter') - pln.propStf.isoCenter = NaN; - end - tmpIsoCenter = matRad_getIsoCenter(evalin('base','cst'),evalin('base','ct')); - if ~isequal(tmpIsoCenter,pln.propStf.isoCenter) - pln.propStf.isoCenter = ones(pln.propStf.numOfBeams,1)*tmpIsoCenter; - handles.State = 1; - UpdateState(handles); - end - set(handles.editIsoCenter,'String',regexprep(num2str((round(tmpIsoCenter*10))./10), '\s+', ' ')); - set(handles.editIsoCenter,'Enable','off') - assignin('base','pln',pln); -else - set(handles.editIsoCenter,'Enable','on') -end - -% radio button: run sequencing -function btnRunSequencing_Callback(~, ~, handles) -getPlnFromGUI(handles); - -% radio button: run direct aperture optimization -function btnRunDAO_Callback(~, ~, handles) -getPlnFromGUI(handles); - -% button: set iso dose levels -function btnSetIsoDoseLevels_Callback(hObject, ~, handles) -prompt = {['Enter iso dose levels in [Gy]. Enter space-separated numbers, e.g. 1.5 2 3 4.98. Enter 0 to use default values']}; -if isequal(handles.IsoDose.Levels,0) || ~isvector(handles.IsoDose.Levels) || any(~isnumeric(handles.IsoDose.Levels)) || any(isnan(handles.IsoDose.Levels)) - defaultLine = {'1 2 3 '}; -else - if isrow(handles.IsoDose.Levels) - defaultLine = cellstr(num2str(handles.IsoDose.Levels,'%.2g ')); - else - defaultLine = cellstr(num2str(handles.IsoDose.Levels','%.2g ')); - end -end - -try - Input = inputdlg(prompt,'Set iso dose levels ', [1 70],defaultLine); - if ~isempty(Input) - handles.IsoDose.Levels = (sort(str2num(Input{1}))); - if length(handles.IsoDose.Levels) == 1 && (handles.IsoDose.Levels(1) ~= 0) - handles.IsoDose.Levels = [handles.IsoDose.Levels handles.IsoDose.Levels]; - end - handles.IsoDose.NewIsoDoseFlag = true; - end -catch - warning('Couldnt parse iso dose levels - using default values'); - handles.IsoDose.Levels = 0; -end -handles = updateIsoDoseLineCache(handles); -handles.IsoDose.NewIsoDoseFlag = false; -UpdatePlot(handles); -guidata(hObject,handles); - - -% popup menu: machine -function popUpMachine_Callback(hObject, ~, handles) -contents = cellstr(get(hObject,'String')); -checkRadiationComposition(handles); -if handles.State > 0 - pln = evalin('base','pln'); - if handles.State > 0 && ~strcmp(contents(get(hObject,'Value')),pln.machine) - handles.State = 1; - UpdateState(handles); - guidata(hObject,handles); - end - getPlnFromGUI(handles); -end - -% toolbar load button -function toolbarLoad_ClickedCallback(hObject, eventdata, handles) -btnLoadMat_Callback(hObject, eventdata, handles); - -% toolbar save button -function toolbarSave_ClickedCallback(hObject, eventdata, handles) - -btnTableSave_Callback(hObject, eventdata, handles); - -try - - if handles.State > 0 - ct = evalin('base','ct'); - cst = evalin('base','cst'); - pln = evalin('base','pln'); - end - - if handles.State > 1 - stf = evalin('base','stf'); - dij = evalin('base','dij'); - end - - if handles.State > 2 - resultGUI = evalin('base','resultGUI'); - end - - switch handles.State - case 1 - uisave({'cst','ct','pln'}); - case 2 - uisave({'cst','ct','pln','stf','dij'}); - case 3 - uisave({'cst','ct','pln','stf','dij','resultGUI'}); - end - -catch - handles = showWarning(handles,'Could not save files'); -end -guidata(hObject,handles); - -% button: about -function btnAbout_Callback(hObject, eventdata, handles) - -msgbox({'https://github.com/e0404/matRad/' 'email: matrad@dkfz.de'},'About'); - -% button: close -function figure1_CloseRequestFcn(hObject, ~, ~) -set(0,'DefaultUicontrolBackgroundColor',[0.5 0.5 0.5]); -selection = questdlg('Do you really want to close matRad?',... - 'Close matRad',... - 'Yes','No','Yes'); - -%BackgroundColor',[0.5 0.5 0.5] - switch selection - case 'Yes', - delete(hObject); - case 'No' - return - end - -% --- Executes on button press in pushbutton_recalc. -function pushbutton_recalc_Callback(hObject, ~, handles) - -% recalculation only makes sense if ... -if evalin('base','exist(''pln'',''var'')') && ... - evalin('base','exist(''stf'',''var'')') && ... - evalin('base','exist(''ct'',''var'')') && ... - evalin('base','exist(''cst'',''var'')') && ... - evalin('base','exist(''resultGUI'',''var'')') - -try - - % indicate that matRad is busy - % change mouse pointer to hour glass - Figures = gcf;%findobj('type','figure'); - set(Figures, 'pointer', 'watch'); - drawnow; - % disable all active objects - InterfaceObj = findobj(Figures,'Enable','on'); - set(InterfaceObj,'Enable','off'); - - % get all data from workspace - pln = evalin('base','pln'); - stf = evalin('base','stf'); - ct = evalin('base','ct'); - cst = evalin('base','cst'); - resultGUI = evalin('base','resultGUI'); - - % get weights of the selected cube - Content = get(handles.popupDisplayOption,'String'); - SelectedCube = Content{get(handles.popupDisplayOption,'Value')}; - Suffix = strsplit(SelectedCube,'_'); - if length(Suffix)>1 - Suffix = ['_' Suffix{2}]; - else - Suffix = ''; - end - - if sum([stf.totalNumOfBixels]) ~= length(resultGUI.(['w' Suffix])) - warndlg('weight vector does not corresponding to current steering file'); - return - end - - % change isocenter if that was changed and do _not_ recreate steering - % information - for i = 1:numel(pln.propStf.gantryAngles) - stf(i).isoCenter = pln.propStf.isoCenter(i,:); - end - - % recalculate influence matrix - if strcmp(pln.radiationMode,'photons') - dij = matRad_calcPhotonDose(ct,stf,pln,cst); - elseif strcmp(pln.radiationMode,'protons') || strcmp(pln.radiationMode,'carbon') - dij = matRad_calcParticleDose(ct,stf,pln,cst); - end - - % recalculate cubes in resultGUI - resultGUIreCalc = matRad_calcCubes(resultGUI.(['w' Suffix]),dij,cst); - - % delete old variables to avoid confusion - if isfield(resultGUI,'effect') - resultGUI = rmfield(resultGUI,'effect'); - resultGUI = rmfield(resultGUI,'RBExDose'); - resultGUI = rmfield(resultGUI,'RBE'); - resultGUI = rmfield(resultGUI,'alpha'); - resultGUI = rmfield(resultGUI,'beta'); - end - - % overwrite the "standard" fields - sNames = fieldnames(resultGUIreCalc); - for j = 1:length(sNames) - resultGUI.(sNames{j}) = resultGUIreCalc.(sNames{j}); - end - - % assign results to base worksapce - assignin('base','dij',dij); - assignin('base','resultGUI',resultGUI); - - handles.State = 3; - - % show physicalDose of newly computed state - handles.SelectedDisplayOption = 'physicalDose'; - set(handles.popupDisplayOption,'Value',find(strcmp('physicalDose',Content))); - - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - - handles.cBarChanged = true; - - handles = updateIsoDoseLineCache(handles); - - UpdateState(handles); - - handles.rememberCurrAxes = false; - UpdatePlot(handles); - handles.rememberCurrAxes = true; - - guidata(hObject,handles); - -catch ME - handles = showError(handles,'CalcDoseCallback: Error in dose recalculation!',ME); - - % change state from busy to normal - set(Figures, 'pointer', 'arrow'); - set(InterfaceObj,'Enable','on'); - - guidata(hObject,handles); - return; - -end - -end - - -% --- Executes on button press in btnSetTissue. -function btnSetTissue_Callback(hObject, ~, handles) - -%check if patient is loaded -if handles.State == 0 - return -end - -%parse variables from base-workspace -cst = evalin('base','cst'); -pln = evalin('base','pln'); - -fileName = [pln.radiationMode '_' pln.machine]; -load(fileName); - -% check for available cell types characterized by alphaX and betaX -for i = 1:size(machine.data(1).alphaX,2) - CellType{i} = [num2str(machine.data(1).alphaX(i)) ' ' num2str(machine.data(1).betaX(i))]; -end - -%fill table data array -for i = 1:size(cst,1) - data{i,1} = cst{i,2}; - data{i,2} = [num2str(cst{i,5}.alphaX) ' ' num2str(cst{i,5}.betaX)]; - data{i,3} = (cst{i,5}.alphaX / cst{i,5}.betaX ); -end - -Width = 400; -Height = 200 + 20*size(data,1); -ScreenSize = get(0,'ScreenSize'); -% show "set tissue parameter" window -figHandles = get(0,'Children'); -if ~isempty(figHandles) - IdxHandle = strcmp(get(figHandles,'Name'),'Set Tissue Parameters'); -else - IdxHandle = []; -end - -%check if window is already exists -if any(IdxHandle) - IdxTable = find(strcmp({figHandles(IdxHandle).Children.Type},'uitable')); - set(figHandles(IdxHandle).Children(IdxTable), 'Data', []); - figTissue = figHandles(IdxHandle); - %set focus - figure(figTissue); -else - figTissue = figure('Name','Set Tissue Parameters','Color',[.5 .5 .5],'NumberTitle','off','Position',... - [ceil(ScreenSize(3)/2) ceil(ScreenSize(4)/2) Width Height]); -end - -% define the tissue parameter table -cNames = {'VOI','alphaX betaX','alpha beta ratio'}; -columnformat = {'char',CellType,'numeric'}; - -tissueTable = uitable('Parent', figTissue,'Data', data,'ColumnEditable',[false true false],... - 'ColumnName',cNames, 'ColumnFormat',columnformat,'Position',[50 150 10 10]); -set(tissueTable,'CellEditCallback',@tissueTable_CellEditCallback); -% set width and height -currTablePos = get(tissueTable,'Position'); -currTableExt = get(tissueTable,'Extent'); -currTablePos(3) = currTableExt(3); -currTablePos(4) = currTableExt(4); -set(tissueTable,'Position',currTablePos); - -% define two buttons with callbacks -uicontrol('Parent', figTissue,'Style', 'pushbutton', 'String', 'Save&Close',... - 'Position', [Width-(0.25*Width) 0.1 * Height 70 30],... - 'Callback', @(hpb,eventdata)SaveTissueParameters(hpb,eventdata,handles)); - -uicontrol('Parent', figTissue,'Style', 'pushbutton', 'String', 'Cancel&Close',... - 'Position', [Width-(0.5*Width) 0.1 * Height 80 30],... - 'Callback', 'close'); - -guidata(hObject,handles); -UpdateState(handles); - - -function SaveTissueParameters(~, ~, handles) -cst = evalin('base','cst'); -% get handle to uiTable -figHandles = get(0,'Children'); -IdxHandle = find(strcmp(get(figHandles,'Name'),'Set Tissue Parameters')); -% find table in window - -figHandleChildren = get(figHandles(IdxHandle),'Children'); -IdxTable = find(strcmp(get(figHandleChildren,'Type'),'uitable')); -uiTable = figHandleChildren(IdxTable); -% retrieve data from uitable -data = get(uiTable,'data'); - -for i = 1:size(cst,1) - for j = 1:size(data,1) - if strcmp(cst{i,2},data{j,1}) - alphaXBetaX = str2num(data{j,2}); - cst{i,5}.alphaX = alphaXBetaX(1); - cst{i,5}.betaX = alphaXBetaX(2); - end - end -end -assignin('base','cst',cst); -close -handles.State = 2; -UpdateState(handles); - - - -function tissueTable_CellEditCallback(hObject, eventdata, ~) -if eventdata.Indices(2) == 2 - alphaXBetaX = str2num(eventdata.NewData); - data = get(hObject,'Data'); - data{eventdata.Indices(1),3} = alphaXBetaX(1)/alphaXBetaX(2); - set(hObject,'Data',data); -end - -% --- Executes on button press in btnSaveToGUI. -function btnSaveToGUI_Callback(hObject, ~, handles) - -Width = 400; -Height = 200; -ScreenSize = get(0,'ScreenSize'); - -% show "Provide result name" window -figHandles = get(0,'Children'); -if ~isempty(figHandles) - IdxHandle = strcmp(get(figHandles,'Name'),'Provide result name'); -else - IdxHandle = []; -end - -%check if window is already exists -if any(IdxHandle) - figDialog = figHandles(IdxHandle); - %set focus - figure(figDialog); -else - figDialog = dialog('Position',[ceil(ScreenSize(3)/2) ceil(ScreenSize(4)/2) Width Height],'Name','Provide result name','Color',[0.5 0.5 0.5]); - - uicontrol('Parent',figDialog,... - 'Style','text',... - 'Position',[20 Height - (0.35*Height) 350 60],... - 'String','Please provide a decriptive name for your optimization result:','FontSize',10,'BackgroundColor',[0.5 0.5 0.5]); - - uicontrol('Parent',figDialog,... - 'Style','edit',... - 'Position',[30 60 350 60],... - 'String','Please enter name here...','FontSize',10,'BackgroundColor',[0.55 0.55 0.55]); - - uicontrol('Parent', figDialog,'Style', 'pushbutton', 'String', 'Save','FontSize',10,... - 'Position', [0.42*Width 0.1 * Height 70 30],... - 'Callback', @(hpb,eventdata)SaveResultToGUI(hpb,eventdata,guidata(hpb))); -end - -uiwait(figDialog); -guidata(hObject, handles); -UpdateState(handles) -UpdatePlot(handles) - - -function SaveResultToGUI(~, ~, ~) -AllFigHandles = get(0,'Children'); -ixHandle = strcmp(get(AllFigHandles,'Name'),'Provide result name'); -uiEdit = get(AllFigHandles(ixHandle),'Children'); - -if strcmp(get(uiEdit(2),'String'),'Please enter name here...') - - formatOut = 'mmddyyHHMM'; - Suffix = ['_' datestr(now,formatOut)]; -else - % delete special characters - Suffix = get(uiEdit(2),'String'); - logIx = isstrprop(Suffix,'alphanum'); - Suffix = ['_' Suffix(logIx)]; -end - -pln = evalin('base','pln'); -resultGUI = evalin('base','resultGUI'); - -if isfield(resultGUI,'physicalDose') - resultGUI.(['physicalDose' Suffix]) = resultGUI.physicalDose; -end -if isfield(resultGUI,'w') - resultGUI.(['w' Suffix]) = resultGUI.w; -end - - -if ~strcmp(pln.propOpt.bioOptimization,'none') - - if isfield(resultGUI,'RBExDose') - resultGUI.(['RBExDose' Suffix]) = resultGUI.RBExDose; - end - - if strcmp(pln.radiationMode,'carbon') == 1 - if isfield(resultGUI,'effect') - resultGUI.(['effect' Suffix])= resultGUI.effect; - end - - if isfield(resultGUI,'RBE') - resultGUI.(['RBE' Suffix]) = resultGUI.RBE; - end - if isfield(resultGUI,'alpha') - resultGUI.(['alpha' Suffix]) = resultGUI.alpha; - end - if isfield(resultGUI,'beta') - resultGUI.(['beta' Suffix]) = resultGUI.beta; - end - end -end - -close(AllFigHandles(ixHandle)); -assignin('base','resultGUI',resultGUI); - -% precompute contours of VOIs -function cst = precomputeContours(ct,cst) -mask = zeros(ct.cubeDim); % create zero cube with same dimeonsions like dose cube -for s = 1:size(cst,1) - cst{s,7} = cell(max(ct.cubeDim(:)),3); - mask(:) = 0; - mask(cst{s,4}{1}) = 1; - for slice = 1:ct.cubeDim(1) - if sum(sum(mask(slice,:,:))) > 0 - cst{s,7}{slice,1} = contourc(squeeze(mask(slice,:,:)),.5*[1 1]); - end - end - for slice = 1:ct.cubeDim(2) - if sum(sum(mask(:,slice,:))) > 0 - cst{s,7}{slice,2} = contourc(squeeze(mask(:,slice,:)),.5*[1 1]); - end - end - for slice = 1:ct.cubeDim(3) - if sum(sum(mask(:,:,slice))) > 0 - cst{s,7}{slice,3} = contourc(squeeze(mask(:,:,slice)),.5*[1 1]); - end - end -end - -%Update IsodoseLines -function handles = updateIsoDoseLineCache(handles) -resultGUI = evalin('base','resultGUI'); -% select first cube if selected option does not exist -if ~isfield(resultGUI,handles.SelectedDisplayOption) - CubeNames = fieldnames(resultGUI); - dose = resultGUI.(CubeNames{1,1}); -else - dose = resultGUI.(handles.SelectedDisplayOption); -end - -%if function is called for the first time then set display parameters -if isempty(handles.dispWindow{3,2}) - handles.dispWindow{3,1} = [min(dose(:)) max(dose(:))]; % set default dose range - handles.dispWindow{3,2} = [min(dose(:)) max(dose(:))]; % set min max values -end - -minMaxRange = handles.dispWindow{3,1}; -% if upper colorrange is defined then use it otherwise 120% iso dose - upperMargin = 1; -if abs((max(dose(:)) - handles.dispWindow{3,1}(1,2))) < 0.01 * max(dose(:)) - upperMargin = 1.2; -end - -if (length(handles.IsoDose.Levels) == 1 && handles.IsoDose.Levels(1,1) == 0) || ~handles.IsoDose.NewIsoDoseFlag - vLevels = [0.1:0.1:0.9 0.95:0.05:upperMargin]; - referenceDose = (minMaxRange(1,2))/(upperMargin); - handles.IsoDose.Levels = minMaxRange(1,1) + (referenceDose-minMaxRange(1,1)) * vLevels; -end -handles.IsoDose.Contours = matRad_computeIsoDoseContours(dose,handles.IsoDose.Levels); - - - -%% CREATE FUNCTIONS -%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% - -% popup menu: machine -function popUpMachine_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -% text box: max value -function txtMaxVal_CreateFcn(hObject, ~, ~) - -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -% text box: edit iso center -function editIsoCenter_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -% text box: stratification levels -function editSequencingLevel_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function slicerPrecision_CreateFcn(hObject, ~, ~) -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -function editBixelWidth_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function editGantryAngle_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function editCouchAngle_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function popupRadMode_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function editFraction_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function popupPlane_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function sliderSlice_CreateFcn(hObject, ~, ~) -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -function popupTypeOfPlot_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function popupDisplayOption_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function sliderBeamSelection_CreateFcn(hObject, ~, ~) -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -function listBoxCmd_CreateFcn(hObject, ~, ~) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -function sliderOffset_CreateFcn(hObject, ~, ~) -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -% --- Executes on selection change in legendTable. -function legendTable_Callback(hObject, eventdata, handles) -% hObject handle to legendTable (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: contents = cellstr(get(hObject,'String')) returns legendTable contents as cell array -% contents{get(hObject,'Value')} returns selected item from legendTable -cst = evalin('base','cst'); - -idx = get(hObject,'Value'); -clr = dec2hex(round(cst{idx,5}.visibleColor(:)*255),2)'; -clr = ['#';clr(:)]'; - -%Get the string entries -tmpString = get(handles.legendTable,'String'); - -if handles.VOIPlotFlag(idx) - handles.VOIPlotFlag(idx) = false; - cst{idx,5}.Visible = false; - tmpString{idx} = ['
',cst{idx,2},'
']; -elseif ~handles.VOIPlotFlag(idx) - handles.VOIPlotFlag(idx) = true; - cst{idx,5}.Visible = true; - tmpString{idx} = ['
✔
',cst{idx,2},'
']; -end -set(handles.legendTable,'String',tmpString); - -% update cst in workspace accordingly -assignin('base','cst',cst) - -guidata(hObject, handles); -UpdatePlot(handles) - -% --- Executes during object creation, after setting all properties. -function legendTable_CreateFcn(hObject, eventdata, handles) -% hObject handle to legendTable (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: listbox controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - - -% --- Executes on button press in importDoseButton. -function importDoseButton_Callback(hObject,eventdata, handles) -% hObject handle to importDoseButton (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -extensions{1} = '*.nrrd'; -[filenames,filepath,~] = uigetfile(extensions,'MultiSelect','on'); - -if ~iscell(filenames) - tmp = filenames; - filenames = cell(1); - filenames{1} = tmp; -end - -ct = evalin('base','ct'); -resultGUI = evalin('base','resultGUI'); - -for filename = filenames - [~,name,~] = fileparts(filename{1}); - [cube,~] = matRad_readCube(fullfile(filepath,filename{1})); - if ~isequal(ct.cubeDim, size(cube)) - errordlg('Dimensions of the imported cube do not match with ct','Import failed!','modal'); - continue; - end - - fieldname = ['import_' matlab.lang.makeValidName(name, 'ReplacementStyle','delete')]; - resultGUI.(fieldname) = cube; -end - -assignin('base','resultGUI',resultGUI); -btnRefresh_Callback(hObject, eventdata, handles) - -% --- Executes on button press in pushbutton_importFromBinary. -function pushbutton_importFromBinary_Callback(hObject, eventdata, handles) -% hObject handle to pushbutton_importFromBinary (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -try - % delete existing workspace - parse variables from base workspace - set(handles.popupDisplayOption,'String','no option available'); - AllVarNames = evalin('base','who'); - RefVarNames = {'ct','cst','pln','stf','dij','resultGUI'}; - for i = 1:length(RefVarNames) - if sum(ismember(AllVarNames,RefVarNames{i}))>0 - evalin('base',['clear ', RefVarNames{i}]); - end - end - handles.State = 0; - - %call the gui - uiwait(matRad_importGUI); - - %Check if we have the variables in the workspace - if evalin('base','exist(''cst'',''var'')') == 1 && evalin('base','exist(''ct'',''var'')') == 1 - cst = evalin('base','cst'); - ct = evalin('base','ct'); - %setCstTable(handles,cst); - generateCstTable(hanles,cst); - handles.TableChanged = false; - set(handles.popupTypeOfPlot,'Value',1); - - % compute HU values - if ~isfield(ct, 'cubeHU') - ct = matRad_electronDensitiesToHU(ct); - assignin('base','ct',ct); - end - if ~isfield(ct, 'cubeHU') - handles.cubeHUavailable = false; - else - handles.cubeHUavailable = true; - end - - % precompute contours - cst = precomputeContours(ct,cst); - - assignin('base','ct',ct); - assignin('base','cst',cst); - - if evalin('base','exist(''pln'',''var'')') - assignin('base','pln',pln); - setPln(handles); - else - getPlnFromGUI(handles); - setPln(handles); - end - handles.State = 1; - end - - % set slice slider - handles.plane = get(handles.popupPlane,'value'); - if handles.State >0 - set(handles.sliderSlice,'Min',1,'Max',ct.cubeDim(handles.plane),... - 'Value',round(ct.cubeDim(handles.plane)/2),... - 'SliderStep',[1/(ct.cubeDim(handles.plane)-1) 1/(ct.cubeDim(handles.plane)-1)]); - end - - if handles.State > 0 - % define context menu for structures - for i = 1:size(cst,1) - if cst{i,5}.Visible - handles.VOIPlotFlag(i) = true; - else - handles.VOIPlotFlag(i) = false; - end - end - end - - handles.dispWindow = cell(3,2); - handles.cBarChanged = true; - - UpdateState(handles); - handles.rememberCurrAxes = false; - UpdatePlot(handles); - handles.rememberCurrAxes = true; -catch - handles = showError(handles,'Binary Patient Import: Could not import data'); - UpdateState(handles); -end - -guidata(hObject,handles); - -% --- Executes on button press in radioBtnIsoCenter. -function radioBtnIsoCenter_Callback(hObject, eventdata, handles) -% hObject handle to radioBtnIsoCenter (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -UpdatePlot(handles) -% Hint: get(hObject,'Value') returns toggle state of radioBtnIsoCenter - -% -------------------------------------------------------------------- -function uipushtool_screenshot_ClickedCallback(hObject, eventdata, handles) -% hObject handle to uipushtool_screenshot (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - - -tmpFig = figure('position',[100 100 700 600],'Visible','off','name','Current View'); -cBarHandle = findobj(handles.figure1,'Type','colorbar'); -if ~isempty(cBarHandle) - new_handle = copyobj([handles.axesFig cBarHandle],tmpFig); -else - new_handle = copyobj(handles.axesFig,tmpFig); -end - -oldPos = get(handles.axesFig,'Position'); -set(new_handle(1),'units','normalized', 'Position',oldPos); - -if ~isfield(handles,'lastStoragePath') || exist(handles.lastStoragePath,'dir') ~= 7 - handles.lastStoragePath = []; -end - -[filename, pathname] = uiputfile({'*.jpg;*.tif;*.png;*.gif','All Image Files'; '*.fig','MATLAB figure file'},'Save current view',[handles.lastStoragePath 'screenshot.png']); - -handles.lastStoragePath = pathname; - -if ~isequal(filename,0) && ~isequal(pathname,0) - set(gcf, 'pointer', 'watch'); - saveas(tmpFig,fullfile(pathname,filename)); - set(gcf, 'pointer', 'arrow'); - close(tmpFig); - uiwait(msgbox('Current view has been succesfully saved!')); -else - uiwait(msgbox('Aborted saving, showing figure instead!')); - set(tmpFig,'Visible','on'); -end - -guidata(hObject,handles); - - -%% Callbacks & Functions for color setting -function UpdateColormapOptions(handles) - -if isfield(handles,'colormapLocked') && handles.colormapLocked - return; -end - -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); - -cMapSelectionIndex = get(handles.popupmenu_chooseColormap,'Value'); -cMapStrings = get(handles.popupmenu_chooseColormap,'String'); - -if selectionIndex > 1 - set(handles.uitoggletool8,'State','on'); -else - set(handles.uitoggletool8,'State','off'); -end - -try - if selectionIndex == 2 - ct = evalin('base','ct'); - currentMap = handles.ctColorMap; - window = handles.dispWindow{selectionIndex,1}; - if isfield(ct, 'cube') - minMax = [min(ct.cube{1}(:)) max(ct.cube{1}(:))]; - else - minMax = [min(ct.cubeHU{1}(:)) max(ct.cubeHU{1}(:))]; - end - % adjust value for custom window to current - handles.windowPresets(1).width = max(window) - min(window); - handles.windowPresets(1).center = mean(window); - % update full window information - handles.windowPresets(2).width = minMax(2) - minMax(1); - handles.windowPresets(2).center = mean(minMax); - elseif selectionIndex == 3 - result = evalin('base','resultGUI'); - dose = result.(handles.SelectedDisplayOption); - currentMap = handles.doseColorMap; - minMax = [min(dose(:)) max(dose(:))]; - window = handles.dispWindow{selectionIndex,1}; - else - window = [0 1]; - minMax = window; - currentMap = 'bone'; - end -catch - window = [0 1]; - minMax = window; - currentMap = 'bone'; -end - -valueRange = minMax(2) - minMax(1); - -windowWidth = window(2) - window(1); -windowCenter = mean(window); - -%This are some arbritrary settings to configure the sliders -sliderCenterMinMax = [minMax(1)-valueRange/2 minMax(2)+valueRange/2]; -sliderWidthMinMax = [0 valueRange*2]; - -%if we have selected a value outside this range, we adapt the slider -%windows -if windowCenter < sliderCenterMinMax(1) - sliderCenterMinMax(1) = windowCenter; -end -if windowCenter > sliderCenterMinMax(2) - sliderCenterMinMax(2) = windowCenter; -end -if windowWidth < sliderWidthMinMax(1) - sliderWidthMinMax(1) = windowWidth; -end -if windowCenter > sliderCenterMinMax(2) - sliderWidthMinMax(2) = windowWidth; -end - - -set(handles.edit_windowCenter,'String',num2str(windowCenter,3)); -set(handles.edit_windowWidth,'String',num2str(windowWidth,3)); -set(handles.edit_windowRange,'String',num2str(window,4)); -set(handles.slider_windowCenter,'Min',sliderCenterMinMax(1),'Max',sliderCenterMinMax(2),'Value',windowCenter); -set(handles.slider_windowWidth,'Min',sliderWidthMinMax(1),'Max',sliderWidthMinMax(2),'Value',windowWidth); - -cMapPopupIndex = find(strcmp(currentMap,cMapStrings)); -set(handles.popupmenu_chooseColormap,'Value',cMapPopupIndex); - -guidata(gcf,handles); - -% --- Executes on selection change in popupmenu_chooseColorData. -function popupmenu_chooseColorData_Callback(hObject, eventdata, handles) -% hObject handle to popupmenu_chooseColorData (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_chooseColorData contents as cell array -% contents{get(hObject,'Value')} returns selected item from popupmenu_chooseColorData - -%index = get(hObject,'Value') - 1; - -handles.cBarChanged = true; - -guidata(hObject,handles); -UpdatePlot(handles); - - -% --- Executes during object creation, after setting all properties. -function popupmenu_chooseColorData_CreateFcn(hObject, eventdata, handles) -% hObject handle to popupmenu_chooseColorData (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: popupmenu controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - - -% --- Executes on slider movement. -function slider_windowCenter_Callback(hObject, eventdata, handles) -% hObject handle to slider_windowCenter (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'Value') returns position of slider -% get(hObject,'Min') and get(hObject,'Max') to determine range of slider - -newCenter = get(hObject,'Value'); -range = get(handles.slider_windowWidth,'Value'); -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); - -handles.dispWindow{selectionIndex,1} = [newCenter-range/2 newCenter+range/2]; -handles.cBarChanged = true; - -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function slider_windowCenter_CreateFcn(hObject, eventdata, handles) -% hObject handle to slider_windowCenter (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: slider controls usually have a light gray background. -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -set(hObject,'Value',0.5); - -% --- Executes on slider movement. -function slider_windowWidth_Callback(hObject, eventdata, handles) -% hObject handle to slider_windowWidth (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'Value') returns position of slider -% get(hObject,'Min') and get(hObject,'Max') to determine range of slider - -newWidth = get(hObject,'Value'); -center = get(handles.slider_windowCenter,'Value'); -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); -handles.dispWindow{selectionIndex,1} = [center-newWidth/2 center+newWidth/2]; -handles.cBarChanged = true; - -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function slider_windowWidth_CreateFcn(hObject, eventdata, handles) -% hObject handle to slider_windowWidth (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: slider controls usually have a light gray background. -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -set(hObject,'Value',1.0); - - -% --- Executes on selection change in popupmenu_chooseColormap. -function popupmenu_chooseColormap_Callback(hObject, eventdata, handles) -% hObject handle to popupmenu_chooseColormap (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_chooseColormap contents as cell array -% contents{get(hObject,'Value')} returns selected item from popupmenu_chooseColormap - -index = get(hObject,'Value'); -strings = get(hObject,'String'); - -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); - -switch selectionIndex - case 2 - handles.ctColorMap = strings{index}; - case 3 - handles.doseColorMap = strings{index}; - otherwise -end - -handles.cBarChanged = true; - -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function popupmenu_chooseColormap_CreateFcn(hObject, eventdata, handles) -% hObject handle to popupmenu_chooseColormap (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: popupmenu controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - - -function edit_windowRange_Callback(hObject, eventdata, handles) -% hObject handle to edit_windowRange (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of edit_windowRange as text -% str2double(get(hObject,'String')) returns contents of edit_windowRange as a double - -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); -vRange = str2num(get(hObject,'String')); -% matlab adds a zero in the beginning when text field is changed -if numel(vRange) == 3 - vRange = vRange(vRange~=0); -end - -handles.dispWindow{selectionIndex,1} = sort(vRange); - -handles.cBarChanged = true; - - % compute new iso dose lines -if selectionIndex > 2 - guidata(hObject,handles); - handles = updateIsoDoseLineCache(handles); -end - -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function edit_windowRange_CreateFcn(hObject, eventdata, handles) -% hObject handle to edit_windowRange (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: edit controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -set(hObject,'String','0 1'); - - -function edit_windowCenter_Callback(hObject, eventdata, handles) -% hObject handle to edit_windowCenter (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of edit_windowCenter as text -% str2double(get(hObject,'String')) returns contents of edit_windowCenter as a double - -newCenter = str2double(get(hObject,'String')); -width = get(handles.slider_windowWidth,'Value'); -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); -handles.dispWindow{selectionIndex,1} = [newCenter-width/2 newCenter+width/2]; -handles.cBarChanged = true; -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function edit_windowCenter_CreateFcn(hObject, eventdata, handles) -% hObject handle to edit_windowCenter (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: edit controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - - - -function edit_windowWidth_Callback(hObject, eventdata, handles) -% hObject handle to edit_windowWidth (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'String') returns contents of edit_windowWidth as text -% str2double(get(hObject,'String')) returns contents of edit_windowWidth as a double - -newWidth = str2double(get(hObject,'String')); -center = get(handles.slider_windowCenter,'Value'); -selectionIndex = get(handles.popupmenu_chooseColorData,'Value'); -handles.dispWindow{selectionIndex,1} = [center-newWidth/2 center+newWidth/2]; -handles.cBarChanged = true; -guidata(hObject,handles); -UpdatePlot(handles); - - -% --- Executes during object creation, after setting all properties. -function edit_windowWidth_CreateFcn(hObject, eventdata, handles) -% hObject handle to edit_windowWidth (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: edit controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - - -% -------------------------------------------------------------------- -function uitoggletool8_ClickedCallback(hObject, eventdata, handles) -% hObject handle to uitoggletool8 (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -%Check if on or off -val = strcmp(get(hObject,'State'),'on'); - -%Now we have to apply the new selection to our colormap options panel -if ~val - newSelection = 1; -else - %Chooses the selection from the highest state - selections = get(handles.popupmenu_chooseColorData,'String'); - newSelection = numel(selections); -end -set(handles.popupmenu_chooseColorData,'Value',newSelection); - -handles.cBarChanged = true; -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes on slider movement. -function sliderOpacity_Callback(hObject, eventdata, handles) -% hObject handle to sliderOpacity (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -handles.doseOpacity = get(hObject,'Value'); -guidata(hObject,handles); -UpdatePlot(handles); - -% --- Executes during object creation, after setting all properties. -function sliderOpacity_CreateFcn(hObject, eventdata, handles) -% hObject handle to sliderOpacity (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: slider controls usually have a light gray background. -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - -%% Data Cursors -function cursorText = dataCursorUpdateFunction(obj,event_obj) -% Display the position of the data cursor -% obj Currently not used (empty) -% event_obj Handle to event object -% output_txt Data cursor text string (string or cell array of strings). - -target = findall(0,'Name','matRadGUI'); - -% Get GUI data (maybe there is another way?) -handles = guidata(target); - -% position of the data point to label -pos = get(event_obj,'Position'); - -%Different behavior for image and profile plot -if get(handles.popupTypeOfPlot,'Value')==1 %Image view - cursorText = cell(0,1); - try - if handles.State >= 1 - plane = get(handles.popupPlane,'Value'); - slice = round(get(handles.sliderSlice,'Value')); - - %Get the CT values - ct = evalin('base','ct'); - - %We differentiate between pos and ix, since the user may put - %the datatip on an isoline which returns a continous position - cubePos = zeros(1,3); - cubePos(plane) = slice; - cubePos(1:end ~= plane) = fliplr(pos); - cubeIx = round(cubePos); - - %Here comes the index permutation stuff - %Cube Index - cursorText{end+1,1} = ['Cube Index: ' mat2str(cubeIx)]; - %Space Coordinates - coords = zeros(1,3); - coords(1) = cubePos(2)*ct.resolution.y; - coords(2) = cubePos(1)*ct.resolution.x; - coords(3) = cubePos(3)*ct.resolution.z; - cursorText{end+1,1} = ['Space Coordinates: ' mat2str(coords,5) ' mm']; - - ctVal = ct.cubeHU{1}(cubeIx(1),cubeIx(2),cubeIx(3)); - cursorText{end+1,1} = ['HU Value: ' num2str(ctVal,3)]; - end - - %Add dose information if available - if handles.State == 3 - %get result structure - result = evalin('base','resultGUI'); - - %Get all result names from popup - resultNames = get(handles.popupDisplayOption,'String'); - - %Display all values of fields found in the resultGUI struct - for runResult = 1:numel(resultNames) - name = resultNames{runResult}; - if isfield(result,name) - field = result.(name); - val = field(cubeIx(1),cubeIx(2),cubeIx(3)); - cursorText{end+1,1} = [name ': ' num2str(val,3)]; - end - end - end - catch - cursorText{end+1,1} = 'Error while retreiving Data!'; - end -else %Profile view - cursorText = cell(2,1); - cursorText{1} = ['Radiological Depth: ' num2str(pos(1),3) ' mm']; - cursorText{2} = [get(target,'DisplayName') ': ' num2str(pos(2),3)]; -end - - - -% --- Executes on selection change in popMenuBioOpt. -function popMenuBioOpt_Callback(hObject, ~, handles) -pln = evalin('base','pln'); -contentBioOpt = get(handles.popMenuBioOpt,'String'); -NewBioOptimization = contentBioOpt(get(handles.popMenuBioOpt,'Value'),:); - -if handles.State > 0 - if (strcmp(pln.propOpt.bioOptimization,'LEMIV_effect') && strcmp(NewBioOptimization,'LEMIV_RBExD')) ||... - (strcmp(pln.propOpt.bioOptimization,'LEMIV_RBExD') && strcmp(NewBioOptimization,'LEMIV_effect')) - % do nothing - re-optimization is still possible - elseif ((strcmp(pln.propOpt.bioOptimization,'const_RBE') && strcmp(NewBioOptimization,'none')) ||... - (strcmp(pln.propOpt.bioOptimization,'none') && strcmp(NewBioOptimization,'const_RBE'))) && isequal(pln.radiationMode,'protons') - % do nothing - re-optimization is still possible - else - handles.State = 1; - end -end -getPlnFromGUI(handles); - -UpdateState(handles); -guidata(hObject,handles); - -% --- Executes during object creation, after setting all properties. -function popMenuBioOpt_CreateFcn(hObject, eventdata, handles) -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -% --- Executes on button press in btn3Dview. -function btn3Dview_Callback(hObject, eventdata, handles) -% hObject handle to btn3Dview (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -if ~isfield(handles,'axesFig3D') || ~isfield(handles,'axesFig3D') || ~isgraphics(handles.axesFig3D) - handles.fig3D = figure('Name','matRad 3D View'); - handles.axesFig3D = axes('Parent',handles.fig3D); - view(handles.axesFig3D,3); -end -%end - -UpdatePlot(handles); - -guidata(hObject,handles); - -% --- Executes on button press in radiobtnCT. -function radiobtnCT_Callback(hObject, eventdata, handles) -% hObject handle to radiobtnCT (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobtnCT -UpdatePlot(handles) - -% --- Executes on button press in radiobtnPlan. -function radiobtnPlan_Callback(hObject, eventdata, handles) -% hObject handle to radiobtnPlan (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobtnPlan -UpdatePlot(handles) - - -% --- Executes on selection change in popupmenu_windowPreset. -function popupmenu_windowPreset_Callback(hObject, eventdata, handles) -% hObject handle to popupmenu_windowPreset (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: contents = cellstr(get(hObject,'String')) returns popupmenu_windowPreset contents as cell array -% contents{get(hObject,'Value')} returns selected item from popupmenu_windowPreset - -selectionIndexCube = 2; % working on ct only -selectionIndexWindow = get(handles.popupmenu_windowPreset,'Value'); -newCenter = handles.windowPresets(selectionIndexWindow).center; -newWidth = handles.windowPresets(selectionIndexWindow).width; - -handles.dispWindow{selectionIndexCube,1} = [newCenter - newWidth/2 newCenter + newWidth/2]; -handles.cBarChanged = true; -guidata(hObject,handles); -UpdatePlot(handles); -UpdateColormapOptions(handles); - - -% --- Executes during object creation, after setting all properties. -function popupmenu_windowPreset_CreateFcn(hObject, eventdata, handles) -% hObject handle to popupmenu_windowPreset (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: popupmenu controls usually have a white background on Windows. -% See ISPC and COMPUTER. -if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor','white'); -end - -% setup ct window list -% data and values from CERR https://github.com/adityaapte/CERR -windowNames = {'Custom','Full','Abd/Med', 'Head', 'Liver', 'Lung', 'Spine', 'Vrt/Bone'}; -windowCenter = {NaN, NaN, -10, 45, 80, -500, 30, 400}; -windowWidth = {NaN, NaN, 330, 125, 305, 1500, 300, 1500}; -windowPresets = cell2struct([windowNames', windowCenter', windowWidth'], {'name', 'center', 'width'},2); - - -handles.windowPresets = windowPresets; - -selectionList = {windowPresets(:).name}; -set(hObject,'String',selectionList(:)); -set(hObject,'Value',1); - - -guidata(hObject,handles); - -% --- Executes on button press in checkbox_lockColormap. -function checkbox_lockColormap_Callback(hObject, eventdata, handles) -% hObject handle to checkbox_lockColormap (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of checkbox_lockColormap -handles.colormapLocked = get(hObject,'Value'); - -if handles.colormapLocked - state = 'Off'; %'Inactive'; -else - state = 'On'; -end - -set(handles.popupmenu_chooseColorData,'Enable',state); -set(handles.popupmenu_windowPreset,'Enable',state); -set(handles.slider_windowWidth,'Enable',state); -set(handles.slider_windowCenter,'Enable',state); -set(handles.edit_windowWidth,'Enable',state); -set(handles.edit_windowCenter,'Enable',state); -set(handles.edit_windowRange,'Enable',state); -set(handles.popupmenu_chooseColormap,'Enable',state); - - -guidata(hObject,handles); - - -function cst = updateStructureTable(handles,cst) -colorAssigned = true; - -% check whether all structures have an assigned color -for i = 1:size(cst,1) - if ~isfield(cst{i,5},'visibleColor') - colorAssigned = false; - break; - elseif isempty(cst{i,5}.visibleColor) - colorAssigned = false; - break; - end -end - -% assign color if color assignment is not already present or inconsistent -if colorAssigned == false - m = 64; - colorStep = ceil(m/size(cst,1)); - colors = colorcube(colorStep*size(cst,1)); - % spread individual VOI colors in the colorcube color palette - colors = colors(1:colorStep:end,:); - - for i = 1:size(cst,1) - cst{i,5}.visibleColor = colors(i,:); - end -end - -for s = 1:size(cst,1) - handles.VOIPlotFlag(s) = cst{s,5}.Visible; - clr = dec2hex(round(cst{s,5}.visibleColor(:)*255),2)'; - clr = ['#';clr(:)]'; - if handles.VOIPlotFlag(s) - tmpString{s} = ['
✔
',cst{s,2},'
']; - else - tmpString{s} = ['
',cst{s,2},'
']; - end -end -set(handles.legendTable,'String',tmpString); - -%-- generates the CST table -function cst = generateCstTable(handles,cst) - -cst = updateStructureTable(handles,cst); - -cstPanel = handles.uipanel3; - -cstPanelPos = getpixelposition(cstPanel); - -%Parameters for line height -objHeight = 22; -lineHeight = 25; %Height of a table line -fieldSep = 2; %Separation between fields horizontally -yTopSep = 40; %Separation of the first line from the top -tableViewHeight = cstPanelPos(4) - yTopSep; %Full height of the view - -%Widths of the fields -buttonW = objHeight; -nameW = 90; -typeW = 70; -opW = objHeight; -functionW = 120; -penaltyW = 40; -paramTitleW = 120; -paramW = 30; - - -%Scrollbar -cstVertTableScroll = findobj(cstPanel.Children,'Style','slider'); -if isempty(cstVertTableScroll) - sliderPos = 0; -else - sliderPos = cstVertTableScroll.Max - cstVertTableScroll.Value; -end -%disp(num2str(sliderPos)); -ypos = @(c) tableViewHeight - c*lineHeight + sliderPos; - -delete(cstPanel.Children); - -%Creates a dummy axis to allow for the use of textboxes instead of uicontrol to be able to use the (la)tex interpreter -tmpAxes = axes('Parent',cstPanel,'units','normalized','position',[0 0 1 1],'visible','off'); - -organTypes = {'OAR', 'TARGET'}; - -%columnname = {'VOI name','VOI type','priority','obj. / const.'};%,'penalty','dose', 'EUD','volume','robustness'}; - -%Get all Classes & classNames -mpkgObjectives = meta.package.fromName('DoseObjectives'); -mpkgConstraints = meta.package.fromName('DoseConstraints'); -classList = [mpkgObjectives.ClassList; mpkgConstraints.ClassList]; - -classList = classList(not([classList.Abstract])); - -%Now get the "internal" name from the properties -classNames = cell(2,numel(classList)); -for clIx = 1:numel(classList) - cl = classList(clIx); - pList = cl.PropertyList; %Get List of all properties - pNameIx = arrayfun(@(p) strcmp(p.Name,'name'),pList); %get index of the "name" property - p = pList(pNameIx); %select name property - pName = p.DefaultValue; % get value / name - classNames(:,clIx) = {cl.Name; pName}; %Store class name and display name -end - -% Collect Class-File & Display Names -%classNames = {classList.Name; p.DefaultValue}; - -%columnformat = {cst(:,2)',{'OAR','TARGET'},'numeric',... -% AllObjectiveFunction,... -% 'numeric','numeric','numeric','numeric',{'none','WC','prob'}}; - -numOfObjectives = 0; -for i = 1:size(cst,1) - if ~isempty(cst{i,6}) - numOfObjectives = numOfObjectives + numel(cst{i,6}); - end -end - -cnt = 0; - -newline = '\n'; - -%Setup Headlines -xPos = 5; -h = uicontrol(cstPanel,'Style','text','String','+/-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove or add Constraint or Objective'); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','VOI name','Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name of the structure with objective/constraint'); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','VOI type','Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification'); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','OP','Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' char(10) '(Smaller number overlaps higher number)']); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','Function','Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Objective/Constraint function type'); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','p','Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Optimization penalty'); -xPos = xPos + h.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','text','String','| Parameters','Position',[xPos ypos(cnt) paramTitleW objHeight],'TooltipString','List of parameters','HorizontalAlignment','left'); -xPos = xPos + h.Position(3) + fieldSep; -cnt = cnt + 1; - -%Create Objectives / Constraints controls -for i = 1:size(cst,1) - if strcmp(cst(i,3),'IGNORED')~=1 - for j=1:numel(cst{i,6}) - - obj = cst{i,6}{j}; - - %Convert to class if not - if ~isa(obj,'matRad_DoseOptimizationFunction') - try - obj = matRad_DoseOptimizationFunction.createInstanceFromStruct(obj); - catch - warning('Objective/Constraint not valid!') - continue; - end - end - - %VOI - %data{Counter,1} = cst{i,2}; - %ypos = cstPanelPos(4) - (yTopSep + cnt*lineHeight); - xPos = 5; - - %h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos 100 objHeight]); - %h.Value = i; - h = uicontrol(cstPanel,'Style','pushbutton','String','-','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Remove Objective/Constraint','Callback',{@btObjRemove_Callback,handles},... - 'UserData',[i,j]); - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel','Style','edit','String',cst{i,2},'Position',[xPos ypos(cnt) nameW objHeight],'TooltipString','Name',... - 'Enable','inactive',... %Disable editing of name atm - 'UserData',[i,2],'Callback',{@editCstParams_Callback,handles}); %Callback added, however, editing is disabled atm - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel,'Style','popupmenu','String',organTypes','Value',find(strcmp(cst{i,3},organTypes)),'Position',[xPos ypos(cnt) typeW objHeight],'TooltipString','Segmentation Classification',... - 'UserData',[i,3],'Callback',{@editCstParams_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; - h = uicontrol(cstPanel,'Style','edit','String',num2str(cst{i,5}.Priority),'Position',[xPos ypos(cnt) opW objHeight],'TooltipString',['Overlap Priority' newline '(Smaller number overlaps higher number)'],... - 'UserData',[i,5],'Callback',{@editCstParams_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; - - h = uicontrol(cstPanel,'Style','popupmenu','String',classNames(2,:)','Value',find(strcmp(obj.name,classNames(2,:))),'Position',[xPos ypos(cnt) functionW objHeight],'TooltipString','Select Objective/Constraint',... - 'UserData',{[i,j],classNames(1,:)},'Callback',{@changeObjFunction_Callback,handles}); - xPos = xPos + h.Position(3) + fieldSep; - - %Check if we have an objective to display penalty - if isa(obj,'DoseObjectives.matRad_DoseObjective') - h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.penalty),'Position',[xPos ypos(cnt) penaltyW objHeight],'TooltipString','Objective Penalty','UserData',[i,j,0],'Callback',{@editObjParam_Callback,handles}); - else - h = uicontrol(cstPanel,'Style','edit','String','----','Position',[xPos ypos(cnt) penaltyW objHeight],'Enable','off'); - end - xPos = xPos + h.Position(3) + fieldSep; - - for p = 1:numel(obj.parameterNames) - %h = uicontrol(cstPanel,'Style','edit','String',obj.parameters{1,p},'Position',[xPos ypos(cnt) 100 objHeight],'Enable','inactive'); - %xPos = xPos + h.Position(3) + fieldSep; - h = text('Parent',tmpAxes,'String',['| ' obj.parameterNames{p} ':'],'VerticalAlignment','middle','units','pix','Position',[xPos ypos(cnt)+lineHeight/2],'Interpreter','tex','FontWeight','normal',... - 'FontSize',cstPanel.FontSize,'FontName',cstPanel.FontName,'FontUnits',cstPanel.FontUnits,'FontWeight','normal');%[xPos ypos(cnt) 100 objHeight]); - xPos = xPos + h.Extent(3) + fieldSep; - %h = annotation(cstPanel,'textbox','String',obj.parameters{1,p},'Units','pix','Position', [xPos ypos(cnt) 100 objHeight],'Interpreter','Tex'); - - %Check if we have a cell and therefore a parameter list - if iscell(obj.parameterTypes{p}) - h = uicontrol(cstPanel,'Style','popupmenu','String',obj.parameterTypes{p}','Value',obj.parameters{p},'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW*2 objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); - else - h = uicontrol(cstPanel,'Style','edit','String',num2str(obj.parameters{p}),'TooltipString',obj.parameterNames{p},'Position',[xPos ypos(cnt) paramW objHeight],'UserData',[i,j,p],'Callback',{@editObjParam_Callback,handles}); - end - - xPos = xPos + h.Position(3) + fieldSep; - end - - cnt = cnt +1; - end - end -end -xPos = 5; -hAdd = uicontrol(cstPanel,'Style','pushbutton','String','+','Position',[xPos ypos(cnt) buttonW objHeight],'TooltipString','Add Objective/Constraint','Callback',{@btObjAdd_Callback,handles}); -xPos = xPos + hAdd.Position(3) + fieldSep; -h = uicontrol(cstPanel,'Style','popupmenu','String',cst(:,2)','Position',[xPos ypos(cnt) nameW objHeight]); -hAdd.UserData = h; - -%Calculate Scrollbar -lastPos = ypos(cnt); -firstPos = ypos(0); -tableHeight = abs(firstPos - lastPos); - -exceedFac = tableHeight / tableViewHeight; -if exceedFac > 1 - sliderFac = exceedFac - 1; - uicontrol(cstPanel,'Style','slider','Units','normalized','Position',[0.975 0 0.025 1],'Min',0,'Max',ceil(sliderFac)*tableViewHeight,'SliderStep',[lineHeight tableViewHeight] ./ (ceil(sliderFac)*tableViewHeight),'Value',ceil(sliderFac)*tableViewHeight - sliderPos,'Callback',{@cstTableSlider_Callback,handles}); -end - - - - -%set(handles.uiTable,'ColumnName',columnname); -%set(handles.uiTable,'ColumnFormat',columnformat); -%set(handles.uiTable,'ColumnEditable',[true true true true true true true true true true]); -%set(handles.uiTable,'Data',data); - - -% --- Executes when uipanel3 is resized. -function uipanel3_SizeChangedFcn(hObject, eventdata, handles) -% hObject handle to uipanel3 (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -try - generateCstTable(handles,evalin('base','cst')); -catch -end - -function btObjAdd_Callback(hObject, ~, handles) -% hObject handle to btnuiTableAdd (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -popupHandle = hObject.UserData; -cstIndex = popupHandle.Value; - -cst = evalin('base','cst'); -%Add Standard Objective -if strcmp(cst{cstIndex,3},'TARGET') - cst{cstIndex,6}{end+1} = struct(DoseObjectives.matRad_SquaredDeviation); -else - cst{cstIndex,6}{end+1} = struct(DoseObjectives.matRad_SquaredOverdosing); -end - -assignin('base','cst',cst); - -%set(handles.uiTable,'data',data); - -%handles.State=1; -%guidata(hObject,handles); -%UpdateState(handles); - -generateCstTable(handles,cst); - -function btObjRemove_Callback(hObject, ~, handles) -% hObject handle to btnuiTableAdd (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -ix = hObject.UserData; - -cst = evalin('base','cst'); -%Add Standard Objective - -cst{ix(1),6}(ix(2)) = []; - -assignin('base','cst',cst); - -%set(handles.uiTable,'data',data); - -%handles.State=1; -%guidata(hObject,handles); -%UpdateState(handles); - -generateCstTable(handles,cst); - -function editObjParam_Callback(hObject, ~, handles) -% hObject handle to btnuiTableAdd (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -ix = hObject.UserData; - -cst = evalin('base','cst'); -%Add Standard Objective - -%if the third index is 0 we changed the penalty -%if we have a popupmenu selection we use value -%otherwise we use the edit string - -%{ -%obj = cst{ix(1),6}{ix(2)}; -%Convert to class if not -if ~isa(obj,'matRad_DoseOptimizationFunction') - try - eval([obj.className '(obj)']); - catch - warning('Objective/Constraint not valid!') - return; - end -end -%} - -if ix(3) == 0 - cst{ix(1),6}{ix(2)}.penalty = str2double(hObject.String); -elseif isequal(hObject.Style,'popupmenu') - cst{ix(1),6}{ix(2)}.parameters{ix(3)} = hObject.Value; -else - cst{ix(1),6}{ix(2)}.parameters{ix(3)} = str2double(hObject.String); -end - -assignin('base','cst',cst); - -%set(handles.uiTable,'data',data); - -%handles.State=1; -%guidata(hObject,handles); -%UpdateState(handles); - -generateCstTable(handles,cst); - -function changeObjFunction_Callback(hObject, ~, handles) -% hObject handle to btnuiTableAdd (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) -data = hObject.UserData; -ix = data{1}; -classNames = data{2}; -classToCreate = classNames{hObject.Value}; - -cst = evalin('base','cst'); -%Add Standard Objective - -%We just check if the user really wanted to change the objective to be -%user-friendly -currentObj = cst{ix(1),6}{ix(2)}; -currentClass = class(currentObj); -if ~strcmp(currentClass,classToCreate) - newObj = eval(classToCreate); - - % Only if we have a penalty value for optimization, apply the new one - % Maybe this check should be more exact? - if (isfield(currentObj,'penalty') || isprop(currentObj,'penalty')) && isprop(newObj,'penalty') - newObj.penalty = currentObj.penalty; - end - - cst{ix(1),6}{ix(2)} = struct(newObj); - - assignin('base','cst',cst); - - %set(handles.uiTable,'data',data); - - %handles.State=1; - %guidata(hObject,handles); - %UpdateState(handles); - - generateCstTable(handles,cst); -end - -function editCstParams_Callback(hObject,~,handles) -data = hObject.UserData; -ix = data(1); -col = data(2); - -cst = evalin('base','cst'); - -switch col - case 2 - cst{ix,col} = hObject.String; - case 3 - cst{ix,col} = hObject.String{hObject.Value}; - case 5 - cst{ix,col}.Priority = uint32(str2double(hObject.String)); - otherwise - warning('Wrong column assignment in GUI based cst setting'); -end - -assignin('base','cst',cst); - -generateCstTable(handles,cst); - - -% --- Executes on button press in radiobutton3Dconf. -function radiobutton3Dconf_Callback(hObject, eventdata, handles) -% hObject handle to radiobutton3Dconf (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hint: get(hObject,'Value') returns toggle state of radiobutton3Dconf - -function x = matRad_checkForConnectedBixelRows(stf) - -x = true; - -for i = 1:size(stf,2) - - bixelPos = reshape([stf(i).ray.rayPos_bev],3,[]); - - rowCoords = unique(bixelPos(3,:)); - - for j = 1:numel(rowCoords) - - increments = diff(bixelPos(1,rowCoords(j) == bixelPos(3,:))); - - % if we find one not connected row -> return false - if numel(unique(increments)) > 1 - x = false; - return; - end - end - -end - -% --- Executes on slider movement. -function cstTableSlider_Callback(hObject, eventdata, handles) -% hObject handle to cstTableSlider (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles structure with handles and user data (see GUIDATA) - -% Hints: get(hObject,'Value') returns position of slider -% get(hObject,'Min') and get(hObject,'Max') to determine range of slider -generateCstTable(handles,evalin('base','cst')); - -% --- Executes during object creation, after setting all properties. -function cstTableSlider_CreateFcn(hObject, eventdata, handles) -% hObject handle to cstTableSlider (see GCBO) -% eventdata reserved - to be defined in a future version of MATLAB -% handles empty - handles not created until after all CreateFcns called - -% Hint: slider controls usually have a light gray background. -if isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor')) - set(hObject,'BackgroundColor',[.9 .9 .9]); -end - - - -% --- Creates and returns a handle to the GUI figure. -function h1 = matRadGUI_export_LayoutFcn(policy) -% policy - create a new figure or use a singleton. 'new' or 'reuse'. - -persistent hsingleton; -if strcmpi(policy, 'reuse') & ishandle(hsingleton) - h1 = hsingleton; - return; -end -load matRadGUI_export.mat - - -appdata = []; -appdata.GUIDEOptions = mat{1}; -appdata.lastValidTag = 'figure1'; -appdata.UsedByGUIData_m = struct(... - 'windowPresets', struct(... - 'name', 'Custom', ... - 'center', NaN, ... - 'width', NaN)); -appdata.GUIDELayoutEditor = []; -appdata.initTags = struct(... - 'handle', [], ... - 'tag', 'figure1'); - -h1 = figure(... -'PaperUnits',get(0,'defaultfigurePaperUnits'),... -'Units','characters',... -'Position',[138.4 -7.38461538461539 273.4 59.5384615384615],... -'Visible','on',... -'Color',[0.501960784313725 0.501960784313725 0.501960784313725],... -'CloseRequestFcn',@(hObject,eventdata)matRadGUI_export('figure1_CloseRequestFcn',hObject,eventdata,guidata(hObject)),... -'IntegerHandle','off',... -'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'MenuBar','none',... -'Name','matRadGUI',... -'NumberTitle','off',... -'Tag','figure1',... -'UserData',[],... -'PaperPosition',get(0,'defaultfigurePaperPosition'),... -'PaperSize',[20.99999864 29.69999902],... -'PaperType',get(0,'defaultfigurePaperType'),... -'InvertHardcopy',get(0,'defaultfigureInvertHardcopy'),... -'ScreenPixelsPerInchMode','manual',... -'HandleVisibility','callback',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'axesLogo'; - -h2 = axes(... -'Parent',h1,... -'FontUnits',get(0,'defaultaxesFontUnits'),... -'Units',get(0,'defaultaxesUnits'),... -'CameraPosition',[0.5 0.5 9.16025403784439],... -'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... -'CameraTarget',[0.5 0.5 0.5],... -'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... -'CameraViewAngle',6.60861036031192,... -'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... -'PlotBoxAspectRatio',[1 0.288951841359773 0.288951841359773],... -'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... -'FontName','CMU Serif',... -'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... -'XTick',[0 0.2 0.4 0.6 0.8 1],... -'XTickMode',get(0,'defaultaxesXTickMode'),... -'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... -'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... -'YTick',[0 0.5 1],... -'YTickMode',get(0,'defaultaxesYTickMode'),... -'YTickLabel',{ '0'; '0.5'; '1' },... -'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... -'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... -'Tag','axesLogo',... -'Position',[0.444874274661509 0.893725992317542 0.184397163120567 0.0998719590268886],... -'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... -'LooseInset',[0.182759687929063 0.112926163636008 0.133555156563546 0.0769951115700055],... -'FontSize',9.63,... -'SortMethod','childorder',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -h3 = get(h2,'title'); - -set(h3,... -'Parent',h2,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0 0 0],... -'ColorMode','auto',... -'Position',[0.500002778623327 1.02596323529412 0.5],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','bold',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h4 = get(h2,'xlabel'); - -set(h4,... -'Parent',h2,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0.500000476837158 -0.277303926477245 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','top',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h5 = get(h2,'ylabel'); - -set(h5,... -'Parent',h2,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[-0.0943626077857305 0.500000476837158 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',90,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h6 = get(h2,'zlabel'); - -set(h6,... -'Parent',h2,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0 0 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','left',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','middle',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -appdata = []; -appdata.lastValidTag = 'axesDKFZ'; - -h7 = axes(... -'Parent',h1,... -'FontUnits',get(0,'defaultaxesFontUnits'),... -'Units',get(0,'defaultaxesUnits'),... -'CameraPosition',[0.5 0.5 9.16025403784439],... -'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... -'CameraTarget',[0.5 0.5 0.5],... -'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... -'CameraViewAngle',6.60861036031192,... -'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... -'PlotBoxAspectRatio',[1 0.145161290322581 0.145161290322581],... -'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... -'FontName','CMU Serif',... -'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... -'XTick',[0 0.2 0.4 0.6 0.8 1],... -'XTickMode',get(0,'defaultaxesXTickMode'),... -'XTickLabel',{ '0'; '0.2'; '0.4'; '0.6'; '0.8'; '1' },... -'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... -'YTick',[0 0.5 1],... -'YTickMode',get(0,'defaultaxesYTickMode'),... -'YTickLabel',{ '0'; '0.5'; '1' },... -'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... -'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... -'Tag','axesDKFZ',... -'Position',[0.652482269503546 0.903969270166453 0.259187620889749 0.0717029449423816],... -'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... -'LooseInset',[0.13 0.11 0.0950000000000001 0.0749999999999999],... -'FontSize',9.63,... -'SortMethod','childorder',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -h8 = get(h7,'title'); - -set(h8,... -'Parent',h7,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0 0 0],... -'ColorMode','auto',... -'Position',[0.500002880250254 1.03678125 0.500000000000007],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','bold',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h9 = get(h7,'xlabel'); - -set(h9,... -'Parent',h7,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0.500000476837158 -0.392847229176095 7.105427357601e-15],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','top',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h10 = get(h7,'ylabel'); - -set(h10,... -'Parent',h7,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[-0.0671572591700866 0.50000047683716 7.105427357601e-15],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',90,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h11 = get(h7,'zlabel'); - -set(h11,... -'Parent',h7,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0 0 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','left',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','middle',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -appdata = []; -appdata.lastValidTag = 'uipanel1'; - -h12 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'ShadowColor',get(0,'defaultuipanelShadowColor'),... -'Title','Plan',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel1',... -'UserData',[],... -'Clipping','off',... -'Position',[0.00451321727917473 0.527528809218956 0.430689877498388 0.272727272727273],... -'FontName','Helvetica',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtBixelWidth'; - -h13 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','bixel width in [mm]',... -'Style','text',... -'Position',[0.0347043701799486 0.859315589353612 0.17866323907455 0.0950570342205324],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtBixelWidth',... -'UserData',[],... -'FontName','Helvetica',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editBixelWidth'; - -h14 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','5',... -'Style','edit',... -'Position',[0.219794344473008 0.889733840304182 0.161953727506427 0.0836501901140684],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editBixelWidth_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editBixelWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editBixelWidth',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtGantryAngle'; - -h15 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Gantry Angle in °',... -'Style','text',... -'Position',[0.032133676092545 0.752851711026616 0.176092544987147 0.0950570342205324],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtGantryAngle',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editGantryAngle'; - -h16 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','0',... -'Style','edit',... -'Position',[0.219794344473008 0.779467680608365 0.161953727506427 0.0836501901140684],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editGantryAngle_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editGantryAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editGantryAngle',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtCouchAngle'; - -h17 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Couch Angle in °',... -'Style','text',... -'Position',[0.0347043701799486 0.64638783269962 0.173521850899743 0.0950570342205324],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtCouchAngle',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editCouchAngle'; - -h18 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','0',... -'Style','edit',... -'Position',[0.219794344473008 0.669201520912547 0.161953727506427 0.0836501901140685],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editCouchAngle_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editCouchAngle_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editCouchAngle',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'popupRadMode'; - -h19 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'photons'; 'protons'; 'carbon' },... -'Style','popupmenu',... -'Value',1,... -'Position',[0.219794344473008 0.52851711026616 0.161953727506427 0.114068441064639],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupRadMode_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupRadMode_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupRadMode',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtRadMode'; - -h20 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Radiation Mode',... -'Style','text',... -'Position',[0.051413881748072 0.539923954372624 0.146529562982005 0.0950570342205324],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtRadMode',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtNumOfFractions'; - -h21 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','# Fractions',... -'Style','text',... -'Position',[0.051413881748072 0.209125475285171 0.143958868894602 0.106463878326996],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtNumOfFractions',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editFraction'; - -h22 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','30',... -'Style','edit',... -'Position',[0.219794344473008 0.228136882129278 0.161953727506427 0.0836501901140684],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editFraction_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editFraction_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editFraction',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtIsoCenter'; - -h23 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','IsoCenter in [mm]',... -'Style','text',... -'Position',[0.0282776349614396 0.330798479087452 0.201799485861183 0.091254752851711],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtIsoCenter',... -'UserData',[],... -'FontName','Helvetica',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editIsoCenter'; - -h24 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','0 0 0',... -'Style','edit',... -'Position',[0.219794344473008 0.338403041825095 0.161953727506427 0.0836501901140684],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editIsoCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editIsoCenter',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'checkIsoCenter'; - -h25 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Auto.',... -'Style','checkbox',... -'Value',1,... -'Position',[0.38560411311054 0.338403041825095 0.0809768637532133 0.091254752851711],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('checkIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','checkIsoCenter',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnRunSequencing'; - -h26 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Run Sequencing',... -'Style','radiobutton',... -'Position',[0.553984575835475 0.628020880324805 0.173521850899743 0.140684410646388],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnRunSequencing_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btnRunSequencing',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnRunDAO'; - -h27 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Run Direct Aperture Optimization',... -'Style','radiobutton',... -'Position',[0.553984575835475 0.32003608945028 0.294344473007712 0.140684410646388],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnRunDAO_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btnRunDAO',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtSequencing'; - -h28 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Stratification Levels',... -'Style','text',... -'Position',[0.553984575835475 0.502545595153702 0.179948586118252 0.102661596958175],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtSequencing',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'editSequencingLevel'; - -h29 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','7',... -'Style','edit',... -'Position',[0.58611825192802 0.449313655990204 0.0668380462724936 0.0836501901140685],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('editSequencingLevel_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('editSequencingLevel_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','editSequencingLevel',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'popUpMachine'; - -h30 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',['Generic';' '],... -'Style','popupmenu',... -'Value',1,... -'Position',[0.219794344473008 0.418250950570342 0.161953727506427 0.114068441064639],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popUpMachine_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popUpMachine_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popUpMachine',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtMachine'; - -h31 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Machine',... -'Style','text',... -'Position',[0.0732647814910026 0.433460076045627 0.106683804627249 0.0950570342205323],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtMachine',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnSetTissue'; - -h32 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Set Tissue',... -'Position',[0.401028277634961 0.110266159695817 0.109254498714653 0.0874524714828897],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnSetTissue_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btnSetTissue',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popMenuBioOpt'; - -h33 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'none'; 'const_RBExD'; 'LEMIV_effect'; 'LEMIV_RBExD' },... -'Style','popupmenu',... -'Value',1,... -'Position',[0.219794344473008 0.0760456273764259 0.165809768637532 0.11787072243346],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popMenuBioOpt_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popMenuBioOpt_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popMenuBioOpt',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'text38'; - -h34 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Type of optimization',... -'Style','text',... -'Position',[0.0102827763496144 0.0988593155893536 0.201799485861183 0.091254752851711],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Interruptible','off',... -'Tag','text38',... -'UserData',[],... -'FontName','Helvetica',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobutton3Dconf'; - -h35 = uicontrol(... -'Parent',h12,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','3D conformal',... -'Style','radiobutton',... -'Position',[0.553224553224553 0.757869249394673 0.212121212121212 0.0847457627118644],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobutton3Dconf_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','radiobutton3Dconf',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uipanel2'; - -h36 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'ShadowColor',get(0,'defaultuipanelShadowColor'),... -'Title',{ 'Visualization'; ' ' },... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel2',... -'UserData',[],... -'Clipping','off',... -'Position',[0.00451321727917473 0.0460947503201024 0.430689877498388 0.203585147247119],... -'FontName','Helvetica',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupPlane'; - -h37 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'coronal'; 'sagital'; 'axial' },... -'Style','popupmenu',... -'Value',3,... -'Position',[0.465315808689303 0.582191780821918 0.113636363636364 0.143835616438356],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupPlane_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupPlane_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupPlane',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'sliderSlice'; - -h38 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'Slider' },... -'Style','slider',... -'Position',[0.134961439588689 0.796610169491525 0.167095115681234 0.096045197740113],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('sliderSlice_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'BusyAction','cancel',... -'Interruptible','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderSlice_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','sliderSlice'); - -appdata = []; -appdata.lastValidTag = 'txtPlanSelection'; - -h39 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Plane Selection',... -'Style','text',... -'Position',[0.34258853596203 0.589041095890411 0.11969696969697 0.116438356164384],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtPlanSelection',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text9'; - -h40 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Slice Selection',... -'Style','text',... -'Position',[0.00909090909090909 0.808219178082192 0.113636363636364 0.116438356164384],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text9',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnContour'; - -h41 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot contour',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.780445969125214 0.733212341197822 0.169811320754717 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnContour_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnContour',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnDose'; - -h42 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot dose',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.780445969125214 0.466969147005444 0.169811320754717 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnDose_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnDose',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnIsoDoseLines'; - -h43 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot isolines',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.780445969125214 0.600907441016334 0.150943396226415 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnIsoDoseLines_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnIsoDoseLines',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtTypeOfPlot'; - -h44 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Type of plot',... -'Style','text',... -'Position',[0.343053173241852 0.793103448275862 0.108061749571183 0.124137931034483],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtTypeOfPlot',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupTypeOfPlot'; - -h45 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'intensity'; 'profile' },... -'Style','popupmenu',... -'Value',1,... -'Position',[0.465315808689303 0.801369863013699 0.113636363636364 0.143835616438356],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupTypeOfPlot_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupTypeOfPlot_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupTypeOfPlot',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtDisplayOption'; - -h46 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Display option',... -'Style','text',... -'Position',[0.34258853596203 0.39041095890411 0.128787878787879 0.102739726027397],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtDisplayOption',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupDisplayOption'; - -h47 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Please select ... ',... -'Style','popupmenu',... -'Value',1,... -'Position',[0.465315808689303 0.36986301369863 0.196969696969697 0.136986301369863],... -'BackgroundColor',[0.831372549019608 0.815686274509804 0.784313725490196],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupDisplayOption_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupDisplayOption_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupDisplayOption',... -'FontWeight','bold'); - -appdata = []; -appdata.lastValidTag = 'txtBeamSelection'; - -h48 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Beam Selection',... -'Style','text',... -'Position',[0.00857632933104631 0.503448275862069 0.118353344768439 0.186206896551724],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtBeamSelection',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'sliderBeamSelection'; - -h49 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','SliderBeamSelection',... -'Style','slider',... -'Position',[0.134961439588689 0.542372881355932 0.167095115681234 0.096045197740113],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('sliderBeamSelection_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderBeamSelection_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','sliderBeamSelection'); - -appdata = []; -appdata.lastValidTag = 'btnProfileType'; - -h50 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','lateral',... -'Position',[0.658025928757913 0.794520547945205 0.0863636363636364 0.157534246575343],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnProfileType_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btnProfileType',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text16'; - -h51 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','GoTo',... -'Style','text',... -'Position',[0.604795511376553 0.801369863013698 0.0454545454545454 0.123287671232877],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text16',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnDVH'; - -h52 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Show DVH/QI',... -'Position',[0.51413881748072 0.0677966101694915 0.123393316195373 0.129943502824859],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnDVH_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btnDVH',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnIsoDoseLinesLabels'; - -h53 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot isolines labels',... -'Style','radiobutton',... -'Position',[0.780445969125214 0.343557168784029 0.202401372212693 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnIsoDoseLinesLabels_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnIsoDoseLinesLabels',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'textOffset'; - -h54 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Offset',... -'Style','text',... -'Position',[0.00909090909090909 0.287104393008975 0.118181818181818 0.123287671232877],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','textOffset',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'sliderOffset'; - -h55 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','SliderOffset',... -'Style','slider',... -'Position',[0.134961439588689 0.271186440677966 0.167095115681234 0.096045197740113],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('sliderOffset_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderOffset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','sliderOffset'); - -appdata = []; -appdata.lastValidTag = 'radioBtnIsoCenter'; - -h56 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot iso center',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.780445969125214 0.205989110707804 0.169811320754717 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radioBtnIsoCenter_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radioBtnIsoCenter',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btn3Dview'; - -h57 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Open 3D-View',... -'Position',[0.595848595848596 0.578947368421053 0.148962148962149 0.157894736842105],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btn3Dview_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Enable','off',... -'Tag','btn3Dview',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnCT'; - -h58 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','plot CT',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.780445969125214 0.864791288566243 0.169811320754717 0.117241379310345],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnCT_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnCT',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'radiobtnPlan'; - -h59 = uicontrol(... -'Parent',h36,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','visualize plan / beams',... -'Style','radiobutton',... -'Value',1,... -'Position',[0.78021978021978 0.0736842105263158 0.2002442002442 0.115789473684211],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('radiobtnPlan_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','radiobtnPlan',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uitoolbar1'; - -h60 = uitoolbar(... -'Parent',h1,... -'Tag','uitoolbar1',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Standard.FileOpen'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', 'matRadGUI(''toolbarLoad_ClickedCallback'',gcbo,[],guidata(gcbo))'); -appdata.lastValidTag = 'toolbarLoad'; - -h61 = uipushtool(... -'Parent',h60,... -'Children',[],... -'BusyAction','cancel',... -'Interruptible','off',... -'Tag','toolbarLoad',... -'CData',mat{2},... -'ClickedCallback',@(hObject,eventdata)matRadGUI_export('toolbarLoad_ClickedCallback',hObject,eventdata,guidata(hObject)),... -'Separator','on',... -'TooltipString','Open File',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Standard.SaveFigure'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', 'matRadGUI(''toolbarSave_ClickedCallback'',gcbo,[],guidata(gcbo))'); -appdata.lastValidTag = 'toolbarSave'; - -h62 = uipushtool(... -'Parent',h60,... -'Children',[],... -'BusyAction','cancel',... -'Interruptible','off',... -'Tag','toolbarSave',... -'CData',mat{3},... -'ClickedCallback',@(hObject,eventdata)matRadGUI_export('toolbarSave_ClickedCallback',hObject,eventdata,guidata(hObject)),... -'Separator','on',... -'TooltipString','Save Figure',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = []; -appdata.lastValidTag = 'uipushtool_screenshot'; - -h63 = uipushtool(... -'Parent',h60,... -'Children',[],... -'Tag','uipushtool_screenshot',... -'CData',mat{4},... -'ClickedCallback',@(hObject,eventdata)matRadGUI_export('uipushtool_screenshot_ClickedCallback',hObject,eventdata,guidata(hObject)),... -'TooltipString','Take a screenshot of the current dose or profile plot',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Exploration.ZoomIn'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', '%default'); -appdata.lastValidTag = 'toolbarZoomIn'; - -h64 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','toolbarZoomIn',... -'CData',mat{5},... -'ClickedCallback','%default',... -'Separator','on',... -'TooltipString','Zoom In',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Exploration.ZoomOut'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', '%default'); -appdata.lastValidTag = 'toolbarZoomOut'; - -h65 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','toolbarZoomOut',... -'CData',mat{6},... -'ClickedCallback','%default',... -'Separator','on',... -'TooltipString','Zoom Out',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Exploration.Pan'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', '%default'); -appdata.lastValidTag = 'toolbarPan'; - -h66 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','toolbarPan',... -'CData',mat{7},... -'ClickedCallback','%default',... -'Separator','on',... -'TooltipString','Pan',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Exploration.DataCursor'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', '%default'); -appdata.lastValidTag = 'toolbarCursor'; - -h67 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','toolbarCursor',... -'CData',mat{8},... -'ClickedCallback','%default',... -'Separator','on',... -'TooltipString','Data Cursor',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Annotation.InsertLegend'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', '%default'); -appdata.lastValidTag = 'toolbarLegend'; - -h68 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','toolbarLegend',... -'CData',mat{9},... -'ClickedCallback','%default',... -'Separator','on',... -'TooltipString','Insert Legend',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.toolid = 'Annotation.InsertColorbar'; -appdata.CallbackInUse = struct(... - 'ClickedCallback', 'matRadGUI(''uitoggletool8_ClickedCallback'',gcbo,[],guidata(gcbo))'); -appdata.lastValidTag = 'uitoggletool8'; - -h69 = uitoggletool(... -'Parent',h60,... -'Children',[],... -'Tag','uitoggletool8',... -'CData',mat{10},... -'ClickedCallback',@(hObject,eventdata)matRadGUI_export('uitoggletool8_ClickedCallback',hObject,eventdata,guidata(hObject)),... -'Separator','on',... -'TooltipString','Insert Colorbar',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uipanel3'; - -h70 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'ShadowColor',get(0,'defaultuipanelShadowColor'),... -'Title',{ 'Objectives & constraints'; ' '; ' ' },... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel3',... -'UserData',[],... -'Clipping','off',... -'Position',[0.00451321727917473 0.257362355953905 0.430689877498388 0.259923175416133],... -'FontName','Helvetica',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uipanel4'; - -h71 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'ShadowColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Title','Workflow',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel4',... -'UserData',[],... -'Clipping','off',... -'Position',[0.00451321727917473 0.810499359795134 0.430045132172792 0.170294494238156],... -'FontName','Helvetica',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text13'; - -h72 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Status:',... -'Style','text',... -'Position',[0.318250377073907 0.107438016528926 0.120663650075415 0.12396694214876],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text13',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtInfo'; - -h73 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','no data loaded',... -'Style','text',... -'Position',[0.414781297134238 0.0247933884297521 0.371040723981901 0.214876033057851],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtInfo',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnLoadMat'; - -h74 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Load *.mat data',... -'Position',[0.151866151866152 0.810126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnLoadMat_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnLoadMat',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnCalcDose'; - -h75 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Calc. influence Mx',... -'Position',[0.35006435006435 0.810126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnCalcDose_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnCalcDose',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnOptimize'; - -h76 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Optimize',... -'Position',[0.544401544401541 0.810126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnOptimize_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnOptimize',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnLoadDicom'; - -h77 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Load DICOM',... -'Position',[0.151866151866152 0.60126582278481 0.177606177606178 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnLoadDicom_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnLoadDicom',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnRefresh'; - -h78 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Refresh',... -'Position',[0.0154440154440154 0.810126582278481 0.0849420849420849 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnRefresh_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnRefresh',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'pushbutton_recalc'; - -h79 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Recalc',... -'Position',[0.543114543114543 0.60126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('pushbutton_recalc_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','pushbutton_recalc',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnSaveToGUI'; - -h80 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Save to GUI',... -'Position',[0.738738738738737 0.810126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnSaveToGUI_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnSaveToGUI',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btn_export'; - -h81 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Export',... -'Position',[0.74002574002574 0.60126582278481 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btn_export_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btn_export',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'importDoseButton'; - -h82 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Import Dose',... -'Position',[0.738738738738738 0.392405063291139 0.178893178893179 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('importDoseButton_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','importDoseButton',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'pushbutton_importFromBinary'; - -h83 = uicontrol(... -'Parent',h71,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Import from Binary',... -'Position',[0.151866151866152 0.392405063291139 0.177606177606178 0.145569620253165],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('pushbutton_importFromBinary_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'TooltipString','Imports a patient data set from binary datafiles describing CT and segmentations',... -'Tag','pushbutton_importFromBinary',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text24'; - -h84 = uicontrol(... -'Parent',h1,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','min value:',... -'Style','text',... -'Position',[0.899701069855255 0.87145643693108 0.0420862177470107 0.0253576072821847],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text24',... -'FontSize',10,... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnSetIsoDoseLevels'; - -h85 = uicontrol(... -'Parent',h1,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Set IsoDose Levels',... -'Position',[0.910792951541851 0.814995131450828 0.071035242290749 0.0223953261927945],... -'BackgroundColor',[0.8 0.8 0.8],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnSetIsoDoseLevels_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnSetIsoDoseLevels',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uipanel10'; - -h86 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'Title','Structure Visibilty',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel10',... -'Clipping','off',... -'Position',[0.896397105097545 0.175812743823147 0.0991189427312775 0.304291287386216],... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'legendTable'; - -h87 = uicontrol(... -'Parent',h86,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'Style','listbox',... -'Value',1,... -'Position',[0.02 0.01 0.97 0.98],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('legendTable_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('legendTable_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','legendTable'); - -appdata = []; -appdata.lastValidTag = 'uipanel11'; - -h88 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'Title','Viewing',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel11',... -'Clipping','off',... -'Position',[0.437782076079949 0.0460947503201025 0.451321727917473 0.842509603072983],... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'axesFig'; - -h89 = axes(... -'Parent',h88,... -'FontUnits',get(0,'defaultaxesFontUnits'),... -'Units',get(0,'defaultaxesUnits'),... -'CameraPosition',[0.5 0.5 9.16025403784439],... -'CameraPositionMode',get(0,'defaultaxesCameraPositionMode'),... -'CameraTarget',[0.5 0.5 0.5],... -'CameraTargetMode',get(0,'defaultaxesCameraTargetMode'),... -'CameraViewAngle',6.60861036031192,... -'CameraViewAngleMode',get(0,'defaultaxesCameraViewAngleMode'),... -'PlotBoxAspectRatio',[1 0.994838709677419 0.994838709677419],... -'PlotBoxAspectRatioMode',get(0,'defaultaxesPlotBoxAspectRatioMode'),... -'FontName','CMU Serif',... -'Colormap',[0 0 0.5625;0 0 0.625;0 0 0.6875;0 0 0.75;0 0 0.8125;0 0 0.875;0 0 0.9375;0 0 1;0 0.0625 1;0 0.125 1;0 0.1875 1;0 0.25 1;0 0.3125 1;0 0.375 1;0 0.4375 1;0 0.5 1;0 0.5625 1;0 0.625 1;0 0.6875 1;0 0.75 1;0 0.8125 1;0 0.875 1;0 0.9375 1;0 1 1;0.0625 1 1;0.125 1 0.9375;0.1875 1 0.875;0.25 1 0.8125;0.3125 1 0.75;0.375 1 0.6875;0.4375 1 0.625;0.5 1 0.5625;0.5625 1 0.5;0.625 1 0.4375;0.6875 1 0.375;0.75 1 0.3125;0.8125 1 0.25;0.875 1 0.1875;0.9375 1 0.125;1 1 0.0625;1 1 0;1 0.9375 0;1 0.875 0;1 0.8125 0;1 0.75 0;1 0.6875 0;1 0.625 0;1 0.5625 0;1 0.5 0;1 0.4375 0;1 0.375 0;1 0.3125 0;1 0.25 0;1 0.1875 0;1 0.125 0;1 0.0625 0;1 0 0;0.9375 0 0;0.875 0 0;0.8125 0 0;0.75 0 0;0.6875 0 0;0.625 0 0;0.5625 0 0],... -'ColormapMode',get(0,'defaultaxesColormapMode'),... -'Alphamap',[0 0.0159 0.0317 0.0476 0.0635 0.0794 0.0952 0.1111 0.127 0.1429 0.1587 0.1746 0.1905 0.2063 0.2222 0.2381 0.254 0.2698 0.2857 0.3016 0.3175 0.3333 0.3492 0.3651 0.381 0.3968 0.4127 0.4286 0.4444 0.4603 0.4762 0.4921 0.5079 0.5238 0.5397 0.5556 0.5714 0.5873 0.6032 0.619 0.6349 0.6508 0.6667 0.6825 0.6984 0.7143 0.7302 0.746 0.7619 0.7778 0.7937 0.8095 0.8254 0.8413 0.8571 0.873 0.8889 0.9048 0.9206 0.9365 0.9524 0.9683 0.9841 1],... -'AlphamapMode',get(0,'defaultaxesAlphamapMode'),... -'GridLineStyle',get(0,'defaultaxesGridLineStyle'),... -'XTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... -'XTickMode',get(0,'defaultaxesXTickMode'),... -'XTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... -'XTickLabelMode',get(0,'defaultaxesXTickLabelMode'),... -'YTick',[0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1],... -'YTickMode',get(0,'defaultaxesYTickMode'),... -'YTickLabel',{ '0'; '0.1'; '0.2'; '0.3'; '0.4'; '0.5'; '0.6'; '0.7'; '0.8'; '0.9'; '1' },... -'YTickLabelMode',get(0,'defaultaxesYTickLabelMode'),... -'Color',get(0,'defaultaxesColor'),... -'CameraMode',get(0,'defaultaxesCameraMode'),... -'DataSpaceMode',get(0,'defaultaxesDataSpaceMode'),... -'ColorSpaceMode',get(0,'defaultaxesColorSpaceMode'),... -'DecorationContainerMode',get(0,'defaultaxesDecorationContainerMode'),... -'ChildContainerMode',get(0,'defaultaxesChildContainerMode'),... -'XRulerMode',get(0,'defaultaxesXRulerMode'),... -'YRulerMode',get(0,'defaultaxesYRulerMode'),... -'ZRulerMode',get(0,'defaultaxesZRulerMode'),... -'AmbientLightSourceMode',get(0,'defaultaxesAmbientLightSourceMode'),... -'ButtonDownFcn',@(hObject,eventdata)matRadGUI_export('axesFig_ButtonDownFcn',hObject,eventdata,guidata(hObject)),... -'Tag','axesFig',... -'UserData',[],... -'Position',[0.0718390804597701 0.0354391371340524 0.902298850574712 0.929121725731895],... -'ActivePositionProperty','position',... -'ActivePositionPropertyMode',get(0,'defaultaxesActivePositionPropertyMode'),... -'LooseInset',[0.199881557553276 0.118695547917832 0.146067292058163 0.0809287826712493],... -'FontSize',9.63,... -'SortMethod','childorder',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -h90 = get(h89,'title'); - -set(h90,... -'Parent',h89,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0 0 0],... -'ColorMode','auto',... -'Position',[0.500000554361651 1.00343482490272 0.5],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','Helvetica',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',2,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','Axes Title',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h91 = get(h89,'xlabel'); - -set(h91,... -'Parent',h89,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0.500000476837158 -0.0366861225689741 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','top',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h92 = get(h89,'ylabel'); - -set(h92,... -'Parent',h89,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[-0.0429806458688552 0.500000476837158 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',90,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10.593,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','center',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','bottom',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','back',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','on',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -h93 = get(h89,'zlabel'); - -set(h93,... -'Parent',h89,... -'Units','data',... -'FontUnits','points',... -'DecorationContainer',[],... -'DecorationContainerMode','auto',... -'Color',[0.15 0.15 0.15],... -'ColorMode','auto',... -'Position',[0 0 0],... -'PositionMode','auto',... -'String',blanks(0),... -'Interpreter','tex',... -'Rotation',0,... -'RotationMode','auto',... -'FontName','CMU Serif',... -'FontSize',10,... -'FontSizeMode','auto',... -'FontAngle','normal',... -'FontWeight','normal',... -'HorizontalAlignment','left',... -'HorizontalAlignmentMode','auto',... -'VerticalAlignment','middle',... -'VerticalAlignmentMode','auto',... -'EdgeColor','none',... -'LineStyle','-',... -'LineWidth',0.5,... -'BackgroundColor','none',... -'Margin',3,... -'Clipping','off',... -'Layer','middle',... -'LayerMode','auto',... -'FontSmoothing','on',... -'FontSmoothingMode','auto',... -'DisplayName',blanks(0),... -'IncludeRenderer','on',... -'IsContainer','off',... -'IsContainerMode','auto',... -'HelpTopicKey',blanks(0),... -'ButtonDownFcn',blanks(0),... -'BusyAction','queue',... -'Interruptible','on',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ,... -'DeleteFcn',blanks(0),... -'Tag',blanks(0),... -'HitTest','on',... -'PickableParts','visible',... -'PickablePartsMode','auto',... -'DimensionNames',{ 'X' 'Y' 'Z' },... -'DimensionNamesMode','auto',... -'XLimInclude','on',... -'YLimInclude','on',... -'ZLimInclude','on',... -'CLimInclude','on',... -'ALimInclude','on',... -'Description','AxisRulerBase Label',... -'DescriptionMode','auto',... -'Visible','off',... -'Serializable','on',... -'HandleVisibility','off',... -'TransformForPrintFcnImplicitInvoke','on',... -'TransformForPrintFcnImplicitInvokeMode','auto'); - -appdata = []; -appdata.lastValidTag = 'uipanel12'; - -h94 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'Title','Info',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel12',... -'Clipping','off',... -'Position',[0.896276240708709 0.0448143405889885 0.0991189427312775 0.12932138284251],... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'btnAbout'; - -h95 = uicontrol(... -'Parent',h94,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','About',... -'Position',[0.238095238095238 0.134831460674157 0.563492063492063 0.280898876404494],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Callback',@(hObject,eventdata)matRadGUI_export('btnAbout_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','btnAbout',... -'FontSize',7,... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text15'; - -h96 = uicontrol(... -'Parent',h94,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','v3.0.0',... -'Style','text',... -'Position',[0.227106227106227 0.752808988764045 0.523809523809524 0.191011235955056],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text15',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text31'; - -h97 = uicontrol(... -'Parent',h94,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','github.com/e0404/matRad',... -'Style','text',... -'Position',[0.0384615384615385 0.528089887640449 0.942307692307693 0.168539325842697],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text31',... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'uipanel_colormapOptions'; - -h98 = uipanel(... -'Parent',h1,... -'FontUnits',get(0,'defaultuipanelFontUnits'),... -'Units',get(0,'defaultuipanelUnits'),... -'Title','Viewer Options',... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Tag','uipanel_colormapOptions',... -'Clipping','off',... -'Position',[0.896397105097545 0.484330299089727 0.0991189427312775 0.318660598179457],... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text_windowCenter'; - -h99 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Window Center:',... -'Style','text',... -'Position',[0.0466666666666666 0.682461750109027 0.673333333333333 0.0699999999999998],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','text_windowCenter',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'textDoseOpacity'; - -h100 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Dose opacity:',... -'Style','text',... -'Position',[0.0466666666666667 0.0706370831711431 0.847328244274809 0.0714285714285714],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','textDoseOpacity',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupmenu_chooseColorData'; - -h101 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'None'; 'CT (ED)'; 'Dose' },... -'Style','popupmenu',... -'Value',1,... -'Position',[0.0486486486486487 0.899328859060403 0.940540540540541 0.11744966442953],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_chooseColorData_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_chooseColorData_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupmenu_chooseColorData'); - -appdata = []; -appdata.lastValidTag = 'slider_windowCenter'; - -h102 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'SliderStep',[0.01 0.05],... -'String','slider',... -'Style','slider',... -'Value',0.5,... -'Position',[0.0432432432432432 0.63758389261745 0.697297297297297 0.0536912751677853],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('slider_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('slider_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','slider_windowCenter'); - -appdata = []; -appdata.lastValidTag = 'text_windowWidth'; - -h103 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Window Width:',... -'Style','text',... -'Position',[0.0466666666666667 0.545761302394105 0.673333333333333 0.0700000000000001],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','text_windowWidth',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupmenu_chooseColormap'; - -h104 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Choose Colormap...',... -'Style','popupmenu',... -'Value',1,... -'Position',[0.0362903225806452 0.278843516266481 0.939516129032258 0.0844686648501362],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_chooseColormap_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_chooseColormap_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupmenu_chooseColormap'); - -appdata = []; -appdata.lastValidTag = 'text_windowRange'; - -h105 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Range:',... -'Style','text',... -'Position',[0.0403225806451613 0.387807911050966 0.274193548387097 0.0708446866485015],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','text_windowRange',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'edit_windowRange'; - -h106 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','0 1',... -'Style','edit',... -'Position',[0.323863636363636 0.399846781328902 0.653409090909091 0.0707395498392283],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowRange_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowRange_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','edit_windowRange'); - -appdata = []; -appdata.lastValidTag = 'edit_windowCenter'; - -h107 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','0.5',... -'Style','edit',... -'Value',1,... -'Position',[0.767567567567568 0.63758389261745 0.205405405405405 0.0704697986577181],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowCenter_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowCenter_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','edit_windowCenter'); - -appdata = []; -appdata.lastValidTag = 'edit_windowWidth'; - -h108 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','1.0',... -'Style','edit',... -'Position',[0.772727272727273 0.518256759964609 0.204545454545455 0.0707395498392284],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('edit_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('edit_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','edit_windowWidth'); - -appdata = []; -appdata.lastValidTag = 'sliderOpacity'; - -h109 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'SliderStep',[0.01 0.05],... -'String','slider',... -'Style','slider',... -'Value',0.6,... -'Position',[0.147727272727273 0.0257234726688103 0.75 0.0546623794212219],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('sliderOpacity_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('sliderOpacity_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','sliderOpacity'); - -appdata = []; -appdata.lastValidTag = 'txtDoseOpacity0Indicator'; - -h110 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','0',... -'Style','text',... -'Position',[0.0466666666666666 0.00599285798906697 0.0810810810810811 0.072463768115942],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','txtDoseOpacity0Indicator',... -'UserData',[],... -'FontName','Helvetica',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtDoseOpacity1Indicator'; - -h111 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','right',... -'String','1',... -'Style','text',... -'Position',[0.8963482566536 0.00864864051690258 0.0810810810810811 0.072463768115942],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','txtDoseOpacity1Indicator',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text_windowPreset'; - -h112 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'HorizontalAlignment','left',... -'String','Window Presets N/A',... -'Style','text',... -'Position',[0.0540540540540541 0.842281879194631 0.697297297297297 0.0704697986577181],... -'BackgroundColor',get(0,'defaultuicontrolBackgroundColor'),... -'Children',[],... -'Tag','text_windowPreset',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'popupmenu_windowPreset'; - -h113 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String',{ 'Custom'; 'Full'; 'Abd/Med'; 'Head'; 'Liver'; 'Lung'; 'Spine'; 'Vrt/Bone' },... -'Style','popupmenu',... -'Value',1,... -'Position',[0.0486486486486487 0.73489932885906 0.940540540540541 0.11744966442953],... -'BackgroundColor',[1 1 1],... -'Callback',@(hObject,eventdata)matRadGUI_export('popupmenu_windowPreset_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Visible','off',... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('popupmenu_windowPreset_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','popupmenu_windowPreset'); - -appdata = []; -appdata.lastValidTag = 'slider_windowWidth'; - -h114 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'SliderStep',[0.01 0.05],... -'String','slider',... -'Style','slider',... -'Value',1,... -'Position',[0.0454545454545455 0.51140507995425 0.698863636363636 0.0546623794212219],... -'BackgroundColor',[0.9 0.9 0.9],... -'Callback',@(hObject,eventdata)matRadGUI_export('slider_windowWidth_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'CreateFcn', {@local_CreateFcn, @(hObject,eventdata)matRadGUI_export('slider_windowWidth_CreateFcn',hObject,eventdata,guidata(hObject)), appdata} ,... -'Tag','slider_windowWidth'); - -appdata = []; -appdata.lastValidTag = 'checkbox_lockColormap'; - -h115 = uicontrol(... -'Parent',h98,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','Lock Settings',... -'Style','checkbox',... -'Position',[0.0486486486486487 0.151006711409396 0.940540540540541 0.0838926174496644],... -'BackgroundColor',[0.502 0.502 0.502],... -'Callback',@(hObject,eventdata)matRadGUI_export('checkbox_lockColormap_Callback',hObject,eventdata,guidata(hObject)),... -'Children',[],... -'Tag','checkbox_lockColormap',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'text39'; - -h116 = uicontrol(... -'Parent',h1,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','max value:',... -'Style','text',... -'Position',[0.901903713027061 0.85370611183355 0.0420862177470107 0.0245123537061118],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','text39',... -'FontSize',10,... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtMinVal'; - -h117 = uicontrol(... -'Parent',h1,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','-',... -'Style','text',... -'Position',[0.955789804908748 0.879908972691808 0.0271397105097546 0.0160598179453836],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtMinVal',... -'FontSize',10,... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - -appdata = []; -appdata.lastValidTag = 'txtMaxVal'; - -h118 = uicontrol(... -'Parent',h1,... -'FontUnits',get(0,'defaultuicontrolFontUnits'),... -'Units','normalized',... -'String','-',... -'Style','text',... -'Position',[0.955789804908748 0.863003901170351 0.0271397105097546 0.0177503250975293],... -'BackgroundColor',[0.501960784313725 0.501960784313725 0.501960784313725],... -'Children',[],... -'Tag','txtMaxVal',... -'FontSize',10,... -'FontWeight','bold',... -'CreateFcn', {@local_CreateFcn, blanks(0), appdata} ); - - -hsingleton = h1; - - -% --- Set application data first then calling the CreateFcn. -function local_CreateFcn(hObject, eventdata, createfcn, appdata) - -if ~isempty(appdata) - names = fieldnames(appdata); - for i=1:length(names) - name = char(names(i)); - setappdata(hObject, name, getfield(appdata,name)); - end -end - -if ~isempty(createfcn) - if isa(createfcn,'function_handle') - createfcn(hObject, eventdata); - else - eval(createfcn); - end -end - - -% --- Handles default GUIDE GUI creation and callback dispatch -function varargout = gui_mainfcn(gui_State, varargin) - -gui_StateFields = {'gui_Name' - 'gui_Singleton' - 'gui_OpeningFcn' - 'gui_OutputFcn' - 'gui_LayoutFcn' - 'gui_Callback'}; -gui_Mfile = ''; -for i=1:length(gui_StateFields) - if ~isfield(gui_State, gui_StateFields{i}) - error(message('MATLAB:guide:StateFieldNotFound', gui_StateFields{ i }, gui_Mfile)); - elseif isequal(gui_StateFields{i}, 'gui_Name') - gui_Mfile = [gui_State.(gui_StateFields{i}), '.m']; - end -end - -numargin = length(varargin); - -if numargin == 0 - % MATRADGUI_EXPORT - % create the GUI only if we are not in the process of loading it - % already - gui_Create = true; -elseif local_isInvokeActiveXCallback(gui_State, varargin{:}) - % MATRADGUI_EXPORT(ACTIVEX,...) - vin{1} = gui_State.gui_Name; - vin{2} = [get(varargin{1}.Peer, 'Tag'), '_', varargin{end}]; - vin{3} = varargin{1}; - vin{4} = varargin{end-1}; - vin{5} = guidata(varargin{1}.Peer); - feval(vin{:}); - return; -elseif local_isInvokeHGCallback(gui_State, varargin{:}) - % MATRADGUI_EXPORT('CALLBACK',hObject,eventData,handles,...) - gui_Create = false; -else - % MATRADGUI_EXPORT(...) - % create the GUI and hand varargin to the openingfcn - gui_Create = true; -end - -if ~gui_Create - % In design time, we need to mark all components possibly created in - % the coming callback evaluation as non-serializable. This way, they - % will not be brought into GUIDE and not be saved in the figure file - % when running/saving the GUI from GUIDE. - designEval = false; - if (numargin>1 && ishghandle(varargin{2})) - fig = varargin{2}; - while ~isempty(fig) && ~ishghandle(fig,'figure') - fig = get(fig,'parent'); - end - - designEval = isappdata(0,'CreatingGUIDEFigure') || (isscalar(fig)&&isprop(fig,'GUIDEFigure')); - end - - if designEval - beforeChildren = findall(fig); - end - - % evaluate the callback now - varargin{1} = gui_State.gui_Callback; - if nargout - [varargout{1:nargout}] = feval(varargin{:}); - else - feval(varargin{:}); - end - - % Set serializable of objects created in the above callback to off in - % design time. Need to check whether figure handle is still valid in - % case the figure is deleted during the callback dispatching. - if designEval && ishghandle(fig) - set(setdiff(findall(fig),beforeChildren), 'Serializable','off'); - end -else - if gui_State.gui_Singleton - gui_SingletonOpt = 'reuse'; - else - gui_SingletonOpt = 'new'; - end - - % Check user passing 'visible' P/V pair first so that its value can be - % used by oepnfig to prevent flickering - gui_Visible = 'auto'; - gui_VisibleInput = ''; - for index=1:2:length(varargin) - if length(varargin) == index || ~ischar(varargin{index}) - break; - end - - % Recognize 'visible' P/V pair - len1 = min(length('visible'),length(varargin{index})); - len2 = min(length('off'),length(varargin{index+1})); - if ischar(varargin{index+1}) && strncmpi(varargin{index},'visible',len1) && len2 > 1 - if strncmpi(varargin{index+1},'off',len2) - gui_Visible = 'invisible'; - gui_VisibleInput = 'off'; - elseif strncmpi(varargin{index+1},'on',len2) - gui_Visible = 'visible'; - gui_VisibleInput = 'on'; - end - end - end - - % Open fig file with stored settings. Note: This executes all component - % specific CreateFunctions with an empty HANDLES structure. - - - % Do feval on layout code in m-file if it exists - gui_Exported = ~isempty(gui_State.gui_LayoutFcn); - % this application data is used to indicate the running mode of a GUIDE - % GUI to distinguish it from the design mode of the GUI in GUIDE. it is - % only used by actxproxy at this time. - setappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name]),1); - if gui_Exported - gui_hFigure = feval(gui_State.gui_LayoutFcn, gui_SingletonOpt); - - % make figure invisible here so that the visibility of figure is - % consistent in OpeningFcn in the exported GUI case - if isempty(gui_VisibleInput) - gui_VisibleInput = get(gui_hFigure,'Visible'); - end - set(gui_hFigure,'Visible','off') - - % openfig (called by local_openfig below) does this for guis without - % the LayoutFcn. Be sure to do it here so guis show up on screen. - movegui(gui_hFigure,'onscreen'); - else - gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); - % If the figure has InGUIInitialization it was not completely created - % on the last pass. Delete this handle and try again. - if isappdata(gui_hFigure, 'InGUIInitialization') - delete(gui_hFigure); - gui_hFigure = local_openfig(gui_State.gui_Name, gui_SingletonOpt, gui_Visible); - end - end - if isappdata(0, genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])) - rmappdata(0,genvarname(['OpenGuiWhenRunning_', gui_State.gui_Name])); - end - - % Set flag to indicate starting GUI initialization - setappdata(gui_hFigure,'InGUIInitialization',1); - - % Fetch GUIDE Application options - gui_Options = getappdata(gui_hFigure,'GUIDEOptions'); - % Singleton setting in the GUI MATLAB code file takes priority if different - gui_Options.singleton = gui_State.gui_Singleton; - - if ~isappdata(gui_hFigure,'GUIOnScreen') - % Adjust background color - if gui_Options.syscolorfig - set(gui_hFigure,'Color', get(0,'DefaultUicontrolBackgroundColor')); - end - - % Generate HANDLES structure and store with GUIDATA. If there is - % user set GUI data already, keep that also. - data = guidata(gui_hFigure); - handles = guihandles(gui_hFigure); - if ~isempty(handles) - if isempty(data) - data = handles; - else - names = fieldnames(handles); - for k=1:length(names) - data.(char(names(k)))=handles.(char(names(k))); - end - end - end - guidata(gui_hFigure, data); - end - - % Apply input P/V pairs other than 'visible' - for index=1:2:length(varargin) - if length(varargin) == index || ~ischar(varargin{index}) - break; - end - - len1 = min(length('visible'),length(varargin{index})); - if ~strncmpi(varargin{index},'visible',len1) - try set(gui_hFigure, varargin{index}, varargin{index+1}), catch break, end - end - end - - % If handle visibility is set to 'callback', turn it on until finished - % with OpeningFcn - gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); - if strcmp(gui_HandleVisibility, 'callback') - set(gui_hFigure,'HandleVisibility', 'on'); - end - - feval(gui_State.gui_OpeningFcn, gui_hFigure, [], guidata(gui_hFigure), varargin{:}); - - if isscalar(gui_hFigure) && ishghandle(gui_hFigure) - % Handle the default callbacks of predefined toolbar tools in this - % GUI, if any - guidemfile('restoreToolbarToolPredefinedCallback',gui_hFigure); - - % Update handle visibility - set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); - - % Call openfig again to pick up the saved visibility or apply the - % one passed in from the P/V pairs - if ~gui_Exported - gui_hFigure = local_openfig(gui_State.gui_Name, 'reuse',gui_Visible); - elseif ~isempty(gui_VisibleInput) - set(gui_hFigure,'Visible',gui_VisibleInput); - end - if strcmpi(get(gui_hFigure, 'Visible'), 'on') - figure(gui_hFigure); - - if gui_Options.singleton - setappdata(gui_hFigure,'GUIOnScreen', 1); - end - end - - % Done with GUI initialization - if isappdata(gui_hFigure,'InGUIInitialization') - rmappdata(gui_hFigure,'InGUIInitialization'); - end - - % If handle visibility is set to 'callback', turn it on until - % finished with OutputFcn - gui_HandleVisibility = get(gui_hFigure,'HandleVisibility'); - if strcmp(gui_HandleVisibility, 'callback') - set(gui_hFigure,'HandleVisibility', 'on'); - end - gui_Handles = guidata(gui_hFigure); - else - gui_Handles = []; - end - - if nargout - [varargout{1:nargout}] = feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); - else - feval(gui_State.gui_OutputFcn, gui_hFigure, [], gui_Handles); - end - - if isscalar(gui_hFigure) && ishghandle(gui_hFigure) - set(gui_hFigure,'HandleVisibility', gui_HandleVisibility); - end -end - -function gui_hFigure = local_openfig(name, singleton, visible) - -% openfig with three arguments was new from R13. Try to call that first, if -% failed, try the old openfig. -if nargin('openfig') == 2 - % OPENFIG did not accept 3rd input argument until R13, - % toggle default figure visible to prevent the figure - % from showing up too soon. - gui_OldDefaultVisible = get(0,'defaultFigureVisible'); - set(0,'defaultFigureVisible','off'); - gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton); - set(0,'defaultFigureVisible',gui_OldDefaultVisible); -else - % Call version of openfig that accepts 'auto' option" - gui_hFigure = matlab.hg.internal.openfigLegacy(name, singleton, visible); -% %workaround for CreateFcn not called to create ActiveX -% peers=findobj(findall(allchild(gui_hFigure)),'type','uicontrol','style','text'); -% for i=1:length(peers) -% if isappdata(peers(i),'Control') -% actxproxy(peers(i)); -% end -% end -end - -function result = local_isInvokeActiveXCallback(gui_State, varargin) - -try - result = ispc && iscom(varargin{1}) ... - && isequal(varargin{1},gcbo); -catch - result = false; -end - -function result = local_isInvokeHGCallback(gui_State, varargin) - -try - fhandle = functions(gui_State.gui_Callback); - result = ~isempty(findstr(gui_State.gui_Name,fhandle.file)) || ... - (ischar(varargin{1}) ... - && isequal(ishghandle(varargin{2}), 1) ... - && (~isempty(strfind(varargin{1},[get(varargin{2}, 'Tag'), '_'])) || ... - ~isempty(strfind(varargin{1}, '_CreateFcn'))) ); -catch - result = false; -end - - diff --git a/matRadGUI_export.mat b/matRadGUI_export.mat deleted file mode 100644 index 0bfd94999f28558ea5f10d178a7467a1b68e2862..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 7550 zcma)gc|6o_^sl9;ZzNHcgi=Jwp4}uBLiT+bOURZiV>go&vQ3hmB>P?>yCM5J)G%cm zk##T_voD|9{oU7n-GA@-<2lbC=XGA^Jm-C$vzX{w8SCB?SGg@OZlY@?>*eF`c}v{P z-!0TDFgQR%+)U5b@bMkxTjF}bo^GL@Ps9VCX^1}z_7OL6ixgK>7FSfzkiVm$q%N)~ zub?je|4A(Wmskx=c>djqA}lNsg($l{Q;`RPV3*|PFQ-_?jN*pKGiACo_gcwJ;ZlW} zvM=?G*Cv<0^d@vKVE05tTV@-f&BCR+9*o^qwwAjEcBL>DYZ-or<@Jc0s9$y;Wg#Eh zV>h0sL*VN~Ul?Lno3uNjgoyO=@+LOieOI;}WH?rOr`W~bLd0>7ypTJY!PX>wVH!6> zzt7l(?07S3i<~a9GkK2RF)HRii3BF+F!RiV zR7vnasyCmxUa;9rU7Xb?NnE@|qh#S*(d1WbkL15UG;gql`0J+2a5Q>74PEKa<}){O zu8bE<*AzdaTKDeZosX#U^xggpIHq-e&Z_@-+uZM7K0iz;>hao*bp1Pw>^;SO!xhFx{*fm=+o=ordm>WpsQ$Kaks*S#n^PZ*Lg`RFdpVXdZ3H)7Tn4WXYn zwj?AxoVw1%Zb<5$YxESn?kvFaB^8U7=USLbL{nkQY^gfRjIA6ovmt{$H`h;M<+esQ zXd*=XeHsbJx-q&F+iMc+vvqY{#J+<)sl1D6B-HTkU61=1W+X8{O4{4do745GA>fhl z;3bVC+auN-9me2!Z%zzZa!+`rqXVZ2RgAbK7`n^!5^I=00@a(2c+)}}}OS7`>UIu zmgE#NF3L}=nFBbBmG}Q1VqsK%04>o2bB}GdlUt&?w;$T)1{Wg7Zzp8vKL$IIwo<5V zn5c3%E$tUi<58<-V%Ho9gEmw*jOt(=1!xiVaKxI0Gw1dkCY~=&w?7(@2tC+J3 z16>zc&)tKjYj`p=Z@{F;FxLJ4r$&eyCG_j-1Pt`7{18Szdpu4l1|)#Tkz0y_3*Rdo za& zA%_PljS(%<_!dd#5En+kQQjGH=w^ytT5X-&Ien;Zt>kCa*`R-f``U7Ap%@$IZ#hU@ zFYc#Q){}Q-r*P88A7f^dl$CokqWHeSnA3+D2)li_1>%MbX4IRkJUx;$y9E z;!D&pGHFY=nz@$8hmnmR>O+%|9n_}9+d6whnrXml=CcpS4$*u3_=;zHuk9T#6ey8~ z5`v2l$<>fz+T|Ub7fdwoX6$NaI+6fR8Ba+hJ0-RkodZD@o2kgfFh5f(ouhBgI&DRB zA0p?Sq++1H49wOAU~68#OKs}E{-|L!pO}eEy9OeiwP(RQIg)QRaR(Fv3rj(S$2{)^ zTm)d)S&UWB&;!~ezQ$avcaT7)nXY-z-P@~%N0jCy_$ezLHHSgYw{q5W7e_!x-y!;I zcyf^QI#IbHELKJgYrR1FHa<(HN6(JMpd<AA!T_PL8Dn3IS0 za4;k$cX-@;pwhbMqTDcFf$5^yINW+aacB_#;CBq_!jzmJUdK!ubdzgwgSv^&sIxzzH?mMAqsNwB5i%a-|m5{b;P@MW{V}TIbc~!)7F|o7`=63ls*hgQLYpaaUA& zh|nv?E=mOIIWf{yca5z9fF^uN8XC3bs$>7QXO0cH zRzM5Ab9+D0oN)kI{cjnk`MYiN8%ZUrtViRSG_>|sLn4*8vnMQedYsQ&E`;F*rR#`3 zBygU(^NzX291mYkZCkBCbRC+8GOrskt{VY{cNkAIwkVX!1-rx6zZig0yhRC=-iZ6D zXKgBY(KASU87~$ULgM^RPa@ILJARCR3?4}5D}s$$z(#+--kE?Lu0=sP_Baj;vb+@Q zFNUT0OexyD@#t2w*nnr@(Y6x{E%eNbJs%GDj0I+4HGH9FLp~L<6RS*%dI`M9S2)KV z#mP{;?~h9*xHvBuwpF#f{!{)Xz*vf#Td~fZHuGyqe5)+}yp2qh)s3yP4tUGUu$o2> zwWo?j+aWn`> z_BfB>PEVq$D)QaROD2skUCus*E-rFAv1WGbk2zFu78LbnyL_g8LZ@6{^c&&Zf7GW} z)3$ABo>mBYWZuW(rYR+7U&aXg)@<19srjms4>S6|&p#uCAAlQmj?NzHX=UI>Zf=2d zKAZQvif@vWUus5n*&Y-m$GgOCxpsRZADxU<{#x+6aV}BoeylRg=X~hTmN6~eGu%81 z_j?LGg>h%rJh&>4*a_O|ea~yDe*Ug%KF|4nK9cC?(&P?wo3H+s;8yxQ@#IS?$*rWz zZp0T`XZ2lwODZxv#Or-rvYRRZ^=WCyyUjz|GLpgF35}>dVHBQOi|2 zt9c=>w=2(|mTOT~(s~5ATwl}9(vjsozAcED?kNL{;YDJ*%WCYVOIJV6qK8=Vn$5^9 zG;Y`R1SAwLod%R=LW+-=4Z(i&j)u0m5`wbuw50dZ#l;4nqb}6d#5X@XBV!|T>2`Oacgz? 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It is subject to the license +% terms in the LICENSE file found in the top-level directory of this +% distribution and at https://github.com/e0404/matRad/LICENSES.txt. No part +% of the matRad project, including this file, may be copied, modified, +% propagated, or distributed except according to the terms contained in the +% LICENSE file. +% +% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% + +env = matRad_getEnvironment(); + +if strcmp(env,'MATLAB') %use the package methodology for Matlab (stable) + mpkgObjectives = meta.package.fromName('DoseObjectives'); + mpkgConstraints = meta.package.fromName('DoseConstraints'); + classList = [mpkgObjectives.ClassList; mpkgConstraints.ClassList]; + + classList = classList(not([classList.Abstract])); + + %Now get the "internal" name from the properties + classNames = cell(2,numel(classList)); + for clIx = 1:numel(classList) + cl = classList(clIx); + pList = cl.PropertyList; %Get List of all properties + pNameIx = arrayfun(@(p) strcmp(p.Name,'name'),pList); %get index of the "name" property + p = pList(pNameIx); %select name property + pName = p.DefaultValue; % get value / name + classNames(:,clIx) = {cl.Name; pName}; %Store class name and display name + end +else + currDir = fileparts(mfilename('fullpath')); + objectiveDir = [currDir filesep '+DoseObjectives']; + constraintDir = [currDir filesep '+DoseConstraints']; + + objFiles = dir(objectiveDir); + for i=1:numel(objFiles) + objFiles(i).pkgName = 'DoseObjectives'; + end + constrFiles = dir(constraintDir); + for i=1:numel(objFiles) + constrFiles(i).pkgName = 'DoseConstraints'; + end + + allFiles = [objFiles; constrFiles]; + + [defNames,dispNames] = arrayfun(@testForClass,allFiles,'UniformOutput',false); + + classNames(1,:) = defNames; + classNames(2,:) = dispNames; + + selectIx = cellfun(@isempty,classNames); + classNames = classNames(:,~selectIx(1,:)); +end +end + +function [defName,dispName] = testForClass(potentialClassFile) + + + try + fPath = potentialClassFile.folder; + [~,fName,~] = fileparts(potentialClassFile.name); + fType = potentialClassFile.pkgName; + + clTmp = meta.class.fromName([fType '.' fName]); + defName = clTmp.Name; + + pList = clTmp.PropertyList; + + pNameIx = cellfun(@(p) strcmp(p.Name,'name'),pList); + p = pList(pNameIx); + dispName = p{1}.DefaultValue ; + + + catch + defName = ''; + dispName = ''; + end +end + diff --git a/plotting/matRad_plotColorbar.m b/plotting/matRad_plotColorbar.m index a4dedfd87..f95d7e8a5 100644 --- a/plotting/matRad_plotColorbar.m +++ b/plotting/matRad_plotColorbar.m @@ -29,7 +29,7 @@ % % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% -v=version; +[~,v] = matRad_getEnvironment(); colormap(axesHandle,cMap); caxis(window); @@ -42,7 +42,5 @@ - - end diff --git a/plotting/matRad_plotIsoDoseLines.m b/plotting/matRad_plotIsoDoseLines.m index a73d99ccb..97e552c68 100644 --- a/plotting/matRad_plotIsoDoseLines.m +++ b/plotting/matRad_plotIsoDoseLines.m @@ -70,12 +70,7 @@ isoColorLevel(isoColorLevel > 1) = 0; colors = squeeze(ind2rgb(uint8(cMapScale*isoColorLevel),cMap)); -switch env - case 'MATLAB' - isoLineHandles = gobjects(0); - case 'OCTAVE' - isoLineHandles = []; -end +isoLineHandles = cell(0); axes(axesHandle); hold on; @@ -92,7 +87,7 @@ else color = unique(colors,'rows'); end - isoLineHandles(end+1) = line(isoContours{slice,plane}(1,lower+1:lower+steps),... + isoLineHandles{end+1} = line(isoContours{slice,plane}(1,lower+1:lower+steps),... isoContours{slice,plane}(2,lower+1:lower+steps),... 'Color',color,'Parent',axesHandle,varargin{:}); if plotLabels diff --git a/tools/matRad_fixExportedGUI.m b/tools/matRad_fixExportedGUI.m index 8d5cddbdd..e8d136bb2 100644 --- a/tools/matRad_fixExportedGUI.m +++ b/tools/matRad_fixExportedGUI.m @@ -1,39 +1,96 @@ -fid = fopen('matRadGUI_export.m','r'); +function matRad_fixExportedGUI(guiFile) + +[filepath, name, ext] = fileparts(which(guiFile)); + +copyfile(guiFile,[filepath filesep name ext '.bak']); +copyfile([filepath filesep name '.fig'],[filepath filesep name '.fig.bak']); + +fid = fopen(guiFile,'r'); f=fread(fid,'*char')'; fclose(fid); -f = regexprep(f,'\n''Alphamap'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); -f = regexprep(f,'\n''DecorationContainer'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); -f = regexprep(f,'\n''Layer'',''(back|middle|front)''(,\.\.\.|\))',''); -f = regexprep(f,'\n''DisplayName'',blanks\(0\)(,\.\.\.|\))',''); -f = regexprep(f,'\n''HelpTopicKey'',blanks\(0\)(,\.\.\.|\))',''); -f = regexprep(f,'\n''DimensionNames'',{[\s\w'']*?}(,\.\.\.|\))',''); -f = regexprep(f,'\n''Description'',''[\w\s]*?''(,\.\.\.|\))',''); +%fix strange newlines after string attributes +f = regexprep(f,'(String'',''\w+?)\r+?('')','$1$2'); + + +f = regexprep(f,'\r?\n''Alphamap'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''DecorationContainer'',\[[\s.;0-9]*?\](,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''Layer'',''(back|middle|front)''(,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''DisplayName'',blanks\(0\)(,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''HelpTopicKey'',blanks\(0\)(,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''DimensionNames'',{[\s\w'']*?}(,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''Description'',''[\w\s]*?''(,\.\.\.|\))',''); +f = regexprep(f,'\r?\n''Tooltip'',''[\w\s]*?''(,\.\.\.|\))',''); %On/Off properties expr = {'FontSmoothing','CLimInclude','ALimInclude','IncludeRenderer','IsContainer','IsContainer','Serializable','TransformForPrintFcnImplicitInvoke'}; expr = strjoin(expr,'|'); -expr = ['\n''(' expr ')'',''(on|off)''(,\.\.\.|\))']; +expr = ['\r?\n''(' expr ')'',''(on|off)''(,\.\.\.|\))']; f = regexprep(f,expr,''); -edit + %Mode sets modestrings = {'ScreenPixelsPerInch','DecorationContainer','Color','FontSize','Layer','FontSmoothing','IsContainer','PickableParts','DimensionNames','Description','TransformForPrintFcnImplicitInvoke'}; modestrings = strjoin(modestrings,'|'); -expr = ['\n''(' modestrings ')Mode'',''\w*?''(,\.\.\.|\))']; +expr = ['\r?\n''(' modestrings ')Mode'',''\w*?''(,\.\.\.|\))']; f = regexprep(f,expr,''); %Mode gets -modestrings = {'Colormap','Alphamap','Camera','DataSpace','ColorSpace','DecorationContainer','ChildContainer','XRuler','YRuler','ZRuler','AmbientLightSource','ActivePositionProperty'}; +modestrings = {'Colormap','Alphamap','Camera','DataSpace','ColorSpace','FontSize','DecorationContainer','ChildContainer','XRuler','YRuler','ZRuler','AmbientLightSource','ActivePositionProperty'}; modestrings = strjoin(modestrings,'|'); -expr = ['\n''(' modestrings ')Mode'',get\(0,''defaultaxes(' modestrings ')Mode''\)(,\.\.\.|\))']; +expr = ['\r?\n''(' modestrings ')Mode'',get\(0,''defaultaxes(' modestrings ')Mode''\)(,\.\.\.|\))']; f = regexprep(f,expr,''); -%Fix whitespaces +%Tooltip property +f = regexprep(f,'\r?\n''TooltipMode'',get\(0,''default(uipushtool|uitoggletool|uicontrol)TooltipMode''\)(,\.\.\.|\))',''); + +%Fix remaining whitespaces f = regexprep(f,'(,\.\.\.)\s*?;',');'); +%Fix Titles +f = regexprep(f,'''Title'',{(.*?)}','''Title'',strtrim(strjoin({$1}))'); + +%Octave doesn't handle ishghandle +f = regexprep(f,'ishghandle','isgraphics'); -fid = fopen('matRadGUI_export2.m','w'); +%Octave doesn't know guidemfile +f = regexprep(f,'guidemfile','%guidemfile'); + +%rename the MainFcn +f = regexprep(f,'gui_mainfcn',[name '_gui_mainFcn']); + +%now extract the layout and mainfcn, which are added to the end of the file +%by the export +expr = '(% --- Creates and returns a handle to the GUI figure\..*?)(% --- Handles default GUIDE GUI creation and callback dispatch.*)'; +out = regexp(f,expr,'tokens'); +layoutFcn = out{1}{1}; +guiMainFcn = out{1}{2}; +%remove the functions +f = regexprep(f,expr,''); +%write the functions to files +[~,~] = mkdir([filepath filesep 'gui']); +fLayoutId = fopen([filepath filesep 'gui' filesep name '_LayoutFcn.m'],'w'); +fprintf(fLayoutId,'%s',layoutFcn); +fclose(fLayoutId); +fGuiMainFcnId = fopen([filepath filesep 'gui' filesep name '_gui_mainFcn.m'],'w'); +fprintf(fGuiMainFcnId,'%s',guiMainFcn); +fclose(fGuiMainFcnId); + +fid = fopen(guiFile,'w'); fprintf(fid,'%s',f); -fclose(fid); \ No newline at end of file +fclose(fid); + +try + mat = load([filepath filesep name '.mat']); + mat = mat.mat; + save([filepath filesep name '.mat'],'mat','-v7'); +catch + fprintf('No .mat file was exported with GUI\n'); +end + +h1 = feval([name '_LayoutFcn'],'reuse'); +savefig(h1,[filepath filesep name '.fig']); +close(h1); + +end \ No newline at end of file From e8da6d6540f575fb5588aebb1a2da2724286e7de Mon Sep 17 00:00:00 2001 From: Niklas Wahl Date: Fri, 9 Aug 2019 18:56:34 +0200 Subject: [PATCH 07/87] fix for the dicom import --- dicomImport/matRad_importDicomGUI.m | 16 ++++++++++------ tools/matRad_fixExportedGUI.m | 4 ++++ 2 files changed, 14 insertions(+), 6 deletions(-) diff --git a/dicomImport/matRad_importDicomGUI.m b/dicomImport/matRad_importDicomGUI.m index 078ed32b6..88f59b638 100755 --- a/dicomImport/matRad_importDicomGUI.m +++ b/dicomImport/matRad_importDicomGUI.m @@ -22,7 +22,7 @@ % Edit the above text to modify the response to help matRad_importDicomGUI -% Last Modified by GUIDE v2.5 02-Jun-2017 00:45:04 +% Last Modified by GUIDE v2.5 09-Aug-2019 18:44:22 % %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% % @@ -43,16 +43,16 @@ 'gui_Singleton', gui_Singleton, ... 'gui_OpeningFcn', @matRad_importDicomGUI_OpeningFcn, ... 'gui_OutputFcn', @matRad_importDicomGUI_OutputFcn, ... - 'gui_LayoutFcn', [] , ... + 'gui_LayoutFcn', @matRad_importDicomGUI_LayoutFcn, ... 'gui_Callback', []); if nargin && ischar(varargin{1}) gui_State.gui_Callback = str2func(varargin{1}); end % if nargout - [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:}); + [varargout{1:nargout}] = matRad_importDicomGUI_gui_mainFcn(gui_State, varargin{:}); % else -% gui_mainfcn(gui_State, varargin{:}); +% matRad_importDicomGUI_gui_mainFcn(gui_State, varargin{:}); % end % End initialization code - DO NOT EDIT @@ -69,13 +69,15 @@ function matRad_importDicomGUI_OpeningFcn(hObject, eventdata, handles, varargin) handles.output = hObject; axes(handles.axesMatRadLogo) -[im, ~, alpha] = imread('matrad_logo.png'); +[path,name,ext] = fileparts(mfilename('fullpath')); + +[im, ~, alpha] = imread([path filesep '..' filesep 'gfx/matrad_logo.png']); q = image(im); axis equal off set(q, 'AlphaData', alpha); % show dkfz logo axes(handles.axesDKFZLogo) -[im, ~, alpha] = imread('DKFZ_Logo.png'); +[im, ~, alpha] = imread([path filesep '..' filesep 'gfx/matrad_logo.png']); p = image(im); axis equal off set(p, 'AlphaData', alpha); @@ -736,3 +738,5 @@ function checkbox3_Callback(hObject, eventdata, handles) end end + + diff --git a/tools/matRad_fixExportedGUI.m b/tools/matRad_fixExportedGUI.m index e8d136bb2..2dd417a31 100644 --- a/tools/matRad_fixExportedGUI.m +++ b/tools/matRad_fixExportedGUI.m @@ -45,6 +45,9 @@ function matRad_fixExportedGUI(guiFile) %Tooltip property f = regexprep(f,'\r?\n''TooltipMode'',get\(0,''default(uipushtool|uitoggletool|uicontrol)TooltipMode''\)(,\.\.\.|\))',''); +%Background Colormode +f = regexprep(f,'\r?\n''BackgroundColorMode'',get\(0,''default(uipushtool|uitoggletool|uicontrol)BackgroundColorMode''\)(,\.\.\.|\))',''); + %Fix remaining whitespaces f = regexprep(f,'(,\.\.\.)\s*?;',');'); @@ -70,6 +73,7 @@ function matRad_fixExportedGUI(guiFile) f = regexprep(f,expr,''); %write the functions to files [~,~] = mkdir([filepath filesep 'gui']); +addpath([filepath filesep 'gui']); fLayoutId = fopen([filepath filesep 'gui' filesep name 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