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TError_sensitivity.m
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TError_sensitivity.m
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% TERROR_sensitivity
% By: Sebastien Biass, Gholamhossein Bagheri, William Aeberhard and
% Costanza Bonadonna
% University of Geneva
% Copyright (C) 2014
%
%
% Email contact: [email protected], [email protected]
%
% This program is free software;
% you can redistribute it and/or modify it under the terms of the
% GNU General Public License as published by the Free Software Foundation.
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
function TError_sensitivity
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Variables definition
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
run_nm = 'example'; % Run name
vent_ht = 6000; % Vent elevation (m)
trop_ht = 17000; % Tropopause height (m)
rangeE = -40:5:40; % Error vector applied to each input parameter sequentially
% Plume height - Carey and Sparks (1986)
dw_v = 20.6; % Downwind (km)
cw_v = 11.3; % Crosswind (km)
dm_v = 1.6; % Diameter (cm)
cl_d = 2500; % Clast density (kgm-3)
% MER - Wilson and Walker (1987)
cstWW_v = 0.295; % Constant
% MER - Mastin et al. (2009)
cstMa_v = 2; % Constant
%cstMa_v = 140.88; % DRE density (kg/m3)
% MER - Degruyter and Bonadonna (2012)
wind_v = -1; % Average wind speed below tropopause (m/s)
% Set -1 to propagate the wind speed obtained from
% Carey and Sparks (1986)
% Volume
fl = 'isopach_example.txt';
% Main file for volume calculation in a tab-delimited
% text file where:
% Row 1: Location of the breaks-in-slope (BIS) for the
% exponential method, max of 3 segments (2 BIS). Enter
% 0 to use only 1 segment
% Row 2:n :
% Col 1: Thickness (cm)
% Col 2: Thickness error (%)
% Col 3: Area (km2)
% Col 4: Area error (%)
% Volume - Bonadonna and Houghton (2005)
C_v = 300; % Distal integration limit (km)
% Volume - Bonadonna and Costa (2012)
% Ranges of lambda and n for the volume calculation using the Weibull fit.
% If ranges are entered as empty matrices (e.g. []), the code will
% automatically use the ranges suggested by Table 2 of Bonadonna and Costa
% (2013, Bulletin of Volcanology) using an average value of volume based on
% the exponential and power-law methods to estimate the VEI.
lam_r = [5,100]; % Range of lambda for optimization algorithm
n_r = [.5,50]; % Range of n for optimization algorithm
% NOTE: These ranges were defined for the example provided here, change for
% your own data
% Duration
dep_d_v = 1000; % Bulk deposit density (kg/m3)
% Add path to functions
addpath(genpath('dep/'));
% Maximum error to plot
max_err = 1500;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Beginning of calculations
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
tstart = now;
clc;
display('_________________________________________________________________');
display(sprintf('TError_sensitivity run %s started: %s', run_nm, datestr(tstart)));
% Create the output folders
if ~exist('Output/', 'dir')
mkdir('Output')
end
display('- Creating output folders...')
if exist(['Output/', run_nm, '/Sensitivity'], 'dir')
choice = questdlg('The output folder already exists. Overwrite?', ...
'', ...
'Yes','No','No');
% Handle response
switch choice
case 'Yes'
rmdir(['Output/', run_nm, '/Sensitivity'], 's');
mkdir(['Output/', run_nm, '/Sensitivity/']);
case 'No'
display('Enter a different run name');
return;
end
else
if exist(['Output/', run_nm, '/'], 'dir')
mkdir(['Output/', run_nm, '/Sensitivity/']);
else
mkdir(['Output/', run_nm, '/']); % Output folder
mkdir(['Output/', run_nm, '/Sensitivity/']); % Figure folder
end
end
%% Volume parameters
file = dlmread(fl);
bis = file(1,:); % Index value of the break in slope
file = file(2:end, 1:4);
file = flipud(sortrows(file, 1));
% Sort thickness in descending order
xdata = file(:,3); % Area (km2)
ydata = file(:,1); % Thickness (cm)
% Defines the breaks-in-slopes
if bis(1) == 0
Aip = 0;
elseif bis(1) > 0 && bis(2) == 0
Aip = bis(1);
elseif bis(2) > 0 && bis(3) == 0
Aip = bis(1:2);
end
% Vector containing the different input parameters
param = {'dw', 'cw', 'dm', 'const', 'dre', 'dep', 'wind', 'c', 'thick', 'area'};
% Storage matrix
stor = zeros(20, 10, length(rangeE),2);
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Calculation using reference values
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
display('Running calculations...');
% Plume height and wind speed
[ht, wd]= get_height_CS86(dw_v, cw_v, dm_v, cl_d); % Plume height, wind
% MER
mer(1) = get_MER_WW87(ht - vent_ht/1000, cstWW_v); % MER - Wilson & Walker
mer(2) = get_MER_M09(ht - vent_ht/1000, cstMa_v); % MER - Mastin et al.
if wind_v == -1
mer(3) = get_MER_DB12(ht - vent_ht/1000, wd, (trop_ht-vent_ht)/1000); % MER - Degruyter and Bonadonna with wind from Carey and Sparks
else
mer(3) = get_MER_DB12(ht - vent_ht/1000, wind_v, (trop_ht-vent_ht)/1000); % MER - Degruyter and Bonadonna with user-defined wind
end
% Volume
[vol(1), fit_FN92] = fn1992(xdata.^0.5, log(ydata), Aip);
[vol(2), ~] = bh2005(xdata.^0.5, ydata, fit_FN92(1), C_v);
[vol(3), ~] = bc2012(xdata.^0.5, ydata, lam_r, n_r);
% Mass
mass(1) = vol(1) * 10^9 * dep_d_v;
mass(2) = vol(2) * 10^9 * dep_d_v;
mass(3) = vol(3) * 10^9 * dep_d_v;
% Duration
dur(1) = mass(1) / mer(1) / 60;
dur(2) = mass(2) / mer(1) / 60;
dur(3) = mass(3) / mer(1) / 60;
dur(4) = mass(1) / mer(2) / 60;
dur(5) = mass(2) / mer(2) / 60;
dur(6) = mass(3) / mer(2) / 60;
dur(7) = mass(1) / mer(3) / 60;
dur(8) = mass(2) / mer(3) / 60;
dur(9) = mass(3) / mer(3) / 60;
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Main loops applying the rangeE variable to input parameters
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
for i = 1:length(rangeE)
display(sprintf('%4.0f %%', rangeE(i)));
for j = 1:length(param)
if j == 1
dw = dw_v + dw_v * rangeE(i) / 100;
else
dw = dw_v;
end
if j == 2
cw = cw_v + cw_v * rangeE(i) / 100;
else
cw = cw_v;
end
if j == 3
dm = dm_v + dm_v * rangeE(i) / 100;
else
dm = dm_v;
end
if j == 4
cstWW = cstWW_v + cstWW_v * rangeE(i) / 100;
else
cstWW = cstWW_v;
end
if j == 5
cstMa = cstMa_v + cstMa_v * rangeE(i) / 100;
else
cstMa = cstMa_v;
end
if j == 6
dep_d = dep_d_v + dep_d_v * rangeE(i) / 100;
else
dep_d = dep_d_v;
end
if j == 7
wind = wind_v + wind_v * rangeE(i) / 100;
else
wind = wind_v;
end
if j == 8
C = C_v + C_v * rangeE(i) / 100;
else
C = C_v;
end
if j == 9
yerr = ydata + ydata .* rangeE(i) ./ 100;
else
yerr = ydata;
end
if j == 10
xerr = xdata + xdata .* rangeE(i) ./ 100;
else
xerr = xdata;
end
% Plume height and wind speed
[stor(1,j,i,1), stor(2,j,i,1)]= get_height_CS86(dw, cw, dm, cl_d); % Plume height, wind
% MER
stor(3,j,i,1) = get_MER_WW87(stor(1,j,i,1), cstWW); % MER - Wilson & Walker
stor(4,j,i,1) = get_MER_M09(stor(1,j,i,1), cstMa); % MER - Mastin et al.
if wind_v == -1
stor(5,j,i,1) = get_MER_DB12(stor(1,j,i,1) - vent_ht/1000, stor(2,j,i,1), (trop_ht-vent_ht)/1000); % MER - Degruyter and Bonadonna with wind from Carey and Sparks
else
stor(5,j,i,1) = get_MER_DB12(stor(1,j,i,1) - vent_ht/1000, wind, (trop_ht-vent_ht)/1000); % MER - Degruyter and Bonadonna with user-defined wind
end
% Volume
[stor(6,j,i,1), fit_FN92] = fn1992(xerr.^0.5, log(yerr), Aip);
[stor(7,j,i,1), ~] = bh2005(xerr.^0.5, yerr, fit_FN92(1), C);
if isempty(lam_r)
[lam_r, n_r] = get_WBL(mean([vol(1), vol(2)]));
end
[stor(8,j,i,1), ~] = bc2012(xerr.^0.5, yerr, lam_r, n_r);
% Mass
stor(9,j,i,1) = stor(6,j,i,1) * 10^9 * dep_d;
stor(10,j,i,1) = stor(7,j,i,1) * 10^9 * dep_d;
stor(11,j,i,1) = stor(8,j,i,1) * 10^9 * dep_d;
% Duration
stor(12,j,i,1) = stor(9,j,i,1) / stor(3,j,i,1) / 60;
stor(13,j,i,1) = stor(10,j,i,1) / stor(3,j,i,1) / 60;
stor(14,j,i,1) = stor(11,j,i,1) / stor(3,j,i,1) / 60;
stor(15,j,i,1) = stor(9,j,i,1) / stor(4,j,i,1) / 60;
stor(16,j,i,1) = stor(10,j,i,1) / stor(4,j,i,1) / 60;
stor(17,j,i,1) = stor(11,j,i,1) / stor(4,j,i,1) / 60;
stor(18,j,i,1) = stor(9,j,i,1) / stor(5,j,i,1) / 60;
stor(19,j,i,1) = stor(10,j,i,1) / stor(5,j,i,1) / 60;
stor(20,j,i,1) = stor(11,j,i,1) / stor(5,j,i,1) / 60;
% Normalization
stor(1,j,i,2) = (stor(1,j,i,1)-ht) / ht*100;
stor(2,j,i,2) = (stor(2,j,i,1)-wd) / wd*100;
stor(3,j,i,2) = (stor(3,j,i,1)-mer(1)) / mer(1)*100;
stor(4,j,i,2) = (stor(4,j,i,1)-mer(2)) / mer(2)*100;
stor(5,j,i,2) = (stor(5,j,i,1)-mer(3)) / mer(3)*100;
stor(6,j,i,2) = (stor(6,j,i,1)-vol(1)) / vol(1)*100;
stor(7,j,i,2) = (stor(7,j,i,1)-vol(2)) / vol(2)*100;
stor(8,j,i,2) = (stor(8,j,i,1)-vol(3)) / vol(3)*100;
stor(9,j,i,2) = (stor(9,j,i,1)-mass(1)) / mass(1)*100;
stor(10,j,i,2) = (stor(10,j,i,1)-mass(2)) / mass(2)*100;
stor(11,j,i,2) = (stor(11,j,i,1)-mass(3)) / mass(3)*100;
stor(12,j,i,2) = (stor(12,j,i,1)-dur(1)) / dur(1)*100;
stor(13,j,i,2) = (stor(13,j,i,1)-dur(2)) / dur(2)*100;
stor(14,j,i,2) = (stor(14,j,i,1)-dur(3)) / dur(3)*100;
stor(15,j,i,2) = (stor(15,j,i,1)-dur(4)) / dur(4)*100;
stor(16,j,i,2) = (stor(16,j,i,1)-dur(5)) / dur(5)*100;
stor(17,j,i,2) = (stor(17,j,i,1)-dur(6)) / dur(6)*100;
stor(18,j,i,2) = (stor(18,j,i,1)-dur(7)) / dur(7)*100;
stor(19,j,i,2) = (stor(19,j,i,1)-dur(8)) / dur(8)*100;
stor(20,j,i,2) = (stor(20,j,i,1)-dur(9)) / dur(9)*100;
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Preparing the outputs
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
leg = {'Downwind range', 'Crosswind range', 'Clast diameter', 'WW87 Constant', 'Ma09 Constant', 'Deposit density', 'Wind speed', 'Distal integration limit', 'Thickness measurement', 'Area of isopach contour'};
mod = {'Height (CS86)', 'Wind (CS86)',...
'MER (WW87)', 'MER (Ma09)', 'MER (DB12)',...
'Volume (FN92)', 'Volume (BH05)', 'Volume (BC12)',...
'Mass (FN92)', 'Mass (BH05)', 'Mass (BC12)',...
'Duration (WW87-FN92)', 'Duration (WW87-BH05)','Duration (WW87-BC12)',...
'Duration (Ma09-FN92)', 'Duration (Ma09-BH05)','Duration (Ma09-BC12)',...
'Duration (DB12-FN92)', 'Duration (DB12-BH05)','Duration (DB12-BC12)'};
% Plot figure
display('Preparing figures...');
cmap = linspecer(10);
count = 1;
for i = 1:20
tmp = shiftdim(squeeze(stor(i,:,:,2)),1);
figure('Position', [465,431,655,252], 'Color', 'w'); hold on
title(mod{i});
xlabel('RIU (%)');
ylabel('ROD (%)');
for j = 1:10
plot(rangeE, tmp(:,j), 'Color', cmap(j,:));
end
set(gca, 'Box', 'on', 'XTick', min(rangeE):10:max(rangeE));
lim = get(gca, 'YLim');
if lim(2) > max_err
lim = [min(min(tmp)) max_err];
set(gca, 'YLim', lim);
end
legend(leg, 'Box', 'on', 'Location', 'NorthEastOutside');
saveas(gca, ['Output/', run_nm, '/Sensitivity/', num2str(count, '%02.0f'), '.eps']);
%export_fig(gca, ['Output/', run_nm, '/Sensitivity/', num2str(count, '%02.0f'), '.eps']);
close(gcf);
count = count+1;
end
% Writing the report
display('Preparing the report...');
out_file = ['Output/', run_nm, '/sensitivity.xls'];
for i = 1:length(rangeE)
sheet_name = num2str(rangeE(i), '%2.0f');
data_cell = num2cell(stor(:,:,i,2));
data_cell = cellfun(@(x) num2str(x, '%4.0f'), data_cell, 'UniformOutput',0);
out_mat = [' ', leg; mod', data_cell];
xlswrite(out_file, out_mat, sheet_name);
end
display(sprintf('TError_sensitivity run %s finished: %s (time elapsed: %3.0f min)', run_nm, datestr(now), etime(datevec(now),datevec(tstart))/60));
display('_________________________________________________________________');