From 6a540c0c70e3d2cd05399bf19e40afcae034e91e Mon Sep 17 00:00:00 2001 From: AishaD Date: Thu, 7 Nov 2024 16:38:27 +0000 Subject: [PATCH 1/2] dont split if empty --- resources/home/dnanexus/generate_workbook/utils/vcf.py | 3 --- 1 file changed, 3 deletions(-) diff --git a/resources/home/dnanexus/generate_workbook/utils/vcf.py b/resources/home/dnanexus/generate_workbook/utils/vcf.py index 5b4f28f..054b7fd 100644 --- a/resources/home/dnanexus/generate_workbook/utils/vcf.py +++ b/resources/home/dnanexus/generate_workbook/utils/vcf.py @@ -442,9 +442,6 @@ def read_additional_files(self): # call some of the formatting methods for regular vcfs # to get things like split INFO columns and hyperlinks - - file_df = splitColumns().split(file_df) - if self.args.split_hgvs: file_df = self.split_hgvs([file_df])[0] From 0801604c31d7aa0801cb537640fb86060dd4693c Mon Sep 17 00:00:00 2001 From: AishaD Date: Thu, 7 Nov 2024 16:43:57 +0000 Subject: [PATCH 2/2] dont split if empty --- resources/home/dnanexus/generate_workbook/utils/vcf.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/resources/home/dnanexus/generate_workbook/utils/vcf.py b/resources/home/dnanexus/generate_workbook/utils/vcf.py index 054b7fd..e14f49a 100644 --- a/resources/home/dnanexus/generate_workbook/utils/vcf.py +++ b/resources/home/dnanexus/generate_workbook/utils/vcf.py @@ -442,6 +442,9 @@ def read_additional_files(self): # call some of the formatting methods for regular vcfs # to get things like split INFO columns and hyperlinks + if not file_df.empty: + file_df = splitColumns().split(file_df) + if self.args.split_hgvs: file_df = self.split_hgvs([file_df])[0]