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Merge pull request #20799 from easybuilders/4.9.x
release EasyBuild v4.9.2
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| Original file line number | Diff line number | Diff line change |
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| easyblock = 'ConfigureMake' | ||
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| name = '4ti2' | ||
| version = '1.6.10' | ||
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| homepage = 'https://4ti2.github.io/' | ||
| description = """A software package for algebraic, geometric and combinatorial problems on linear spaces""" | ||
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| toolchain = {'name': 'GCC', 'version': '13.2.0'} | ||
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| github_account = '4ti2' | ||
| source_urls = [GITHUB_SOURCE] | ||
| sources = ['Release_%s.tar.gz' % '_'.join(version.split('.'))] | ||
| checksums = ['2f1bce3203da65b651d68cbd0ace0f89a16d1f436cf5f24e22bc15ec22df936a'] | ||
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| dependencies = [ | ||
| ('GMP', '6.3.0'), | ||
| ('GLPK', '5.0'), | ||
| ] | ||
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| builddependencies = [('Autotools', '20220317')] | ||
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| preconfigopts = './autogen.sh && ' | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/%s' % x for x in ['4ti2gmp', '4ti2int32', '4ti2int64']], | ||
| 'dirs': ['include/4ti2', 'lib', 'share'] | ||
| } | ||
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| moduleclass = 'math' |
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| @@ -0,0 +1,16 @@ | ||
| name = 'AEDT' | ||
| version = '2024R1' | ||
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| homepage = 'https://www.ansys.com/products/electronics' | ||
| description = """The Ansys Electronics Desktop (AEDT) is a platform that enables | ||
| true electronics system design. AEDT provides access to the Ansys gold-standard | ||
| electromagnetics simulation solutions such as Ansys HFSS, Ansys Maxwell, Ansys Q3D | ||
| Extractor, Ansys SIwave, and Ansys Icepak using electrical CAD (ECAD) and mechanical | ||
| CAD (MCAD) workflows.""" | ||
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| toolchain = SYSTEM | ||
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| sources = ['ELECTRONICS_%(version)s_LINX64.tgz'] | ||
| checksums = ['7b131adf981ebca1e2f4fe8e607e50323167b69e77180a0ab61b2759d57abca5'] | ||
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| moduleclass = 'phys' |
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| # Updated to version 24.0.02 | ||
| # Author: J. Sassmannshausen (Imperial College London/UK) | ||
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| easyblock = 'CMakeMake' | ||
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| name = 'AFNI' | ||
| version = '24.0.02' | ||
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| homepage = 'http://afni.nimh.nih.gov/' | ||
| description = """AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - | ||
| a technique for mapping human brain activity.""" | ||
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| toolchain = {'name': 'foss', 'version': '2023a'} | ||
| toolchainopts = {'openmp': True, 'pic': True} | ||
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| source_urls = ['https://github.com/afni/afni/archive/'] | ||
| sources = ['AFNI_%(version)s.tar.gz'] | ||
| checksums = ['2915ed5bf98712abe3373bfc285f946fdee6cf1367e23ba80575dd6eedb3529a'] | ||
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| builddependencies = [ | ||
| ('CMake', '3.26.3'), | ||
| ] | ||
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| dependencies = [ | ||
| ('tcsh', '6.24.10'), | ||
| ('Python', '3.11.3'), | ||
| ('X11', '20230603'), | ||
| ('motif', '2.3.8'), | ||
| ('R', '4.3.2'), | ||
| ('PyQt5', '5.15.10'), | ||
| ('expat', '2.5.0'), | ||
| ('libpng', '1.6.39'), | ||
| ('libjpeg-turbo', '2.1.5.1'), | ||
| ('GSL', '2.7'), | ||
| ('GLib', '2.77.1'), | ||
| ('zlib', '1.2.13'), | ||
| ('freeglut', '3.4.0'), | ||
| ('Pillow', '10.0.0'), | ||
| ('matplotlib', '3.7.2'), | ||
| ('SciPy-bundle', '2023.07'), | ||
| ('Xvfb', '21.1.8'), | ||
| ('FFmpeg', '6.0'), # required for running the program | ||
| ] | ||
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| # Make sure stuff does not get installed in .local | ||
| configopts = '-DSTANDARD_PYTHON_INSTALL=OFF ' | ||
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| # Changing permissions of some files | ||
| postinstallcmds = ['chmod a+x %(installdir)s/bin/afni_system_check.py ;'] | ||
| postinstallcmds += ['chmod a+x %(installdir)s/bin/uber_subject.py ; '] | ||
| postinstallcmds += ['chmod a+x %(installdir)s/bin/init_user_dotfiles.py ; '] | ||
| # Copying apparently missing files over | ||
| postinstallcmds += ['cp -f %(start_dir)s/src/discoraj/ClusterExplorer/ClustExp_HistTable.py %(installdir)s/bin ; '] | ||
| postinstallcmds += ['cp -f %(start_dir)s/src/discoraj/ClusterExplorer/ClustExp_StatParse.py %(installdir)s/bin ; '] | ||
| postinstallcmds += ['cp -rf %(start_dir)s/src/scripts_for_r %(installdir)s/bin ; '] | ||
| postinstallcmds += ['cp -rf %(start_dir)s/src/R_scripts %(installdir)s/bin/scripts_for_r ; '] | ||
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| sanity_check_commands = ["afni -help"] | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/afni', 'lib/libgts.%s' % SHLIB_EXT, 'lib/libnifti2.%s' % SHLIB_EXT], | ||
| 'dirs': ['include', 'share'], | ||
| } | ||
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| modextrapaths = {'PATH': ['bin/scripts_for_r']} | ||
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| moduleclass = 'bio' |
114 changes: 114 additions & 0 deletions
114
easybuild/easyconfigs/a/AMGX/AMGX-2.4.0-foss-2023a-CUDA-12.1.1.eb
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,114 @@ | ||
| easyblock = 'CMakeMake' | ||
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| name = 'AMGX' | ||
| version = '2.4.0' | ||
| versionsuffix = '-CUDA-%(cudaver)s' | ||
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| homepage = 'https://github.com/NVIDIA/AMGX' | ||
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| description = """Distributed multigrid linear solver library on GPU""" | ||
| toolchain = {'name': 'foss', 'version': '2023a'} | ||
| toolchainopts = {'openmp': True} | ||
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| github_account = 'NVIDIA' | ||
| source_urls = [GITHUB_SOURCE] | ||
| sources = ['v%(version)s.tar.gz'] | ||
| patches = [ | ||
| 'AMGX-%(version)s_external-thrust.patch', | ||
| 'AMGX-%(version)s_fix-openmp-linking.patch', | ||
| ] | ||
| checksums = [ | ||
| {'v2.4.0.tar.gz': 'b030b8c2e58c4c9987444e5d28fd61e1c5dcd65d484a290d6a18ae0bc5c0e9db'}, | ||
| {'AMGX-2.4.0_external-thrust.patch': '90e4be09615a26bd7ebce68ced63d9d3b52141f7b480e8cedb17b05003656e16'}, | ||
| {'AMGX-2.4.0_fix-openmp-linking.patch': '10046d5d9fff48cb4902797525d43963855c4834f262bdc3c341bbc2cb1f6f76'}, | ||
| ] | ||
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| builddependencies = [ | ||
| ('CMake', '3.26.3'), | ||
| ] | ||
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| dependencies = [ | ||
| ('CUDA', '12.1.1', '', SYSTEM), | ||
| ('UCX-CUDA', '1.14.1', versionsuffix), | ||
| ('magma', '2.7.2', versionsuffix), | ||
| ('CCCL', '2.3.0', versionsuffix), | ||
| ] | ||
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| cuda_compute_capabilities = ['7.0', '8.0', '9.0'] # AMGX defaults for CUDA 12 | ||
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| configopts = '-DCUDA_ARCH="%(cuda_cc_cmake)s" ' | ||
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| # Can't run all tests (55 failing); many fail due to mixed precision not being supported | ||
| # some fail due to missing external data files, many unknown issues | ||
| # All tests can be attempted with "amgx_tests_launcher --all" | ||
| local_tests = [ | ||
| 'AggregatesCoarseGeneratorTest', | ||
| 'AggregatesCoarseningFactor', | ||
| 'AggregatesDeterminism', | ||
| 'AggregatesDiagonalOutside', | ||
| 'AmgLevelsReuse', | ||
| 'CAPIFailure', | ||
| 'CAPIVersionCheck', | ||
| 'ClassicalStrengthAffinityTest', | ||
| 'ClassicalStrengthTest', | ||
| 'ConfigStringParsing', | ||
| 'CsrMultiplyTests_Poisson27_100_100', | ||
| 'CsrMultiplyTests_Poisson27_10_10', | ||
| 'CsrMultiplyTests_Poisson5_100_100', | ||
| 'CsrMultiplyTests_Poisson5_10_1', | ||
| 'CsrMultiplyTests_Poisson7_100_100', | ||
| 'CsrMultiplyTests_Poisson7_10_10', | ||
| 'CsrMultiplyTests_Poisson9_100_100', | ||
| 'CsrMultiplyTests_Poisson9_10_10', | ||
| 'CsrSparsityILU1Tests_Poisson27_100_100', | ||
| 'CsrSparsityILU1Tests_Poisson27_10_10', | ||
| 'CsrSparsityILU1Tests_Poisson5_100_100', | ||
| 'CsrSparsityILU1Tests_Poisson5_10_10', | ||
| 'CsrSparsityILU1Tests_Poisson7_100_100', | ||
| 'CsrSparsityILU1Tests_Poisson7_10_10', | ||
| 'CsrSparsityILU1Tests_Poisson9_100_100', | ||
| 'CsrSparsityILU1Tests_Poisson9_10_10', | ||
| 'CsrSparsityTests_Poisson27_100_100', | ||
| 'CsrSparsityTests_Poisson27_10_10', | ||
| 'CsrSparsityTests_Poisson5_100_100', | ||
| 'CsrSparsityTests_Poisson5_10_10', | ||
| 'CsrSparsityTests_Poisson7_100_100', | ||
| 'CsrSparsityTests_Poisson7_10_10', | ||
| 'CsrSparsityTests_Poisson9_100_100', | ||
| 'CsrSparsityTests_Poisson9_10_10', | ||
| 'DenseLUSolverTest_Factorization_Id_256', | ||
| 'DenseLUSolverTest_Factorization_Id_32', | ||
| 'DenseLUSolverTest_Solve_Id_256', | ||
| 'DenseLUSolverTest_Solve_Id_32', | ||
| 'DenseLUSolverTest_Solve_Poisson3D', | ||
| 'FactoriesTest', | ||
| 'FGMRESConvergencePoisson', | ||
| 'GenericSpMVTest', | ||
| 'IDRConvergencePoisson', | ||
| 'IDRmsyncConvergencePoisson', | ||
| 'LargeMatricesSupport', | ||
| 'LowDegDeterminism', | ||
| 'MatrixTests', | ||
| 'MatrixVectorMultiplyTests', | ||
| 'MinMaxColoringTest', | ||
| 'Nested_AMG_equivalence', | ||
| 'NestedSolvers', | ||
| 'NormTests', | ||
| 'ObjectDestructionSequence', | ||
| 'PermuteTests', | ||
| 'RandomMatrix', | ||
| 'SmootherBlockPoissonTest', | ||
| 'TemplateConfigTest', | ||
| 'TemplateTest', | ||
| 'truncateCountTest', | ||
| 'VectorTests', | ||
| ] | ||
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| runtest = "amgx_tests_launcher && src/amgx_tests_launcher " + ' '.join(local_tests) | ||
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| sanity_check_paths = { | ||
| 'files': ['include/amgx_c.h', 'lib/libamgx.a', 'lib/libamgxsh.%s' % SHLIB_EXT], | ||
| 'dirs': [], | ||
| } | ||
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| moduleclass = 'lib' |
13 changes: 13 additions & 0 deletions
13
easybuild/easyconfigs/a/AMGX/AMGX-2.4.0_external-thrust.patch
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,13 @@ | ||
| Forces AMGX to use external dependencies, avoiding needing the git submodule | ||
| the entire (deprecated) thrust library and all its dependencies. | ||
| author: [email protected] | ||
| --- CMakeLists.txt.orig 2024-03-30 01:54:34.469780980 +0100 | ||
| +++ CMakeLists.txt 2024-03-30 01:54:46.491884432 +0100 | ||
| @@ -251,7 +251,6 @@ | ||
| ENDIF() | ||
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| # We depend on a specific version of thrust now so include the submodule | ||
| -add_subdirectory("thrust") | ||
| find_package(Thrust REQUIRED CONFIG) | ||
| thrust_create_target(Thrust) | ||
|
|
15 changes: 15 additions & 0 deletions
15
easybuild/easyconfigs/a/AMGX/AMGX-2.4.0_fix-openmp-linking.patch
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,15 @@ | ||
| Adds missing link option necessary for openmp linking. | ||
| The target_link_libraries used for amgx are not sufficient as CMake haven't | ||
| sorted this out yet, thus manually adding the flag for GCC. | ||
| author: [email protected] | ||
| --- CMakeLists.txt.orig 2024-03-30 03:27:22.354168764 +0100 | ||
| +++ CMakeLists.txt 2024-03-30 03:28:00.397486779 +0100 | ||
| @@ -291,6 +291,8 @@ | ||
| ELSE (WIN32) | ||
| target_link_libraries(amgx CUDA::cublas CUDA::cusparse CUDA::cusolver CUDA::nvToolsExt m pthread) | ||
| target_link_libraries(amgxsh CUDA::cublas CUDA::cusparse CUDA::cusolver CUDA::nvToolsExt m pthread) | ||
| + target_link_options(amgx INTERFACE "-fopenmp") | ||
| + target_link_options(amgxsh INTERFACE "-fopenmp") | ||
| ENDIF(WIN32) | ||
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| if(MPI_FOUND) |
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