From 8a8983aa6c7c35e3b9cf73773605831e526201d2 Mon Sep 17 00:00:00 2001
From: software <software@easybuild-el8.cloud.in.bmrc.ox.ac.uk>
Date: Thu, 28 Nov 2024 14:51:51 +0000
Subject: [PATCH] adding easyconfigs: Tombo-1.5.1-foss-2023a.eb

---
 .../t/Tombo/Tombo-1.5.1-foss-2023a.eb         | 50 +++++++++++++++++++
 1 file changed, 50 insertions(+)
 create mode 100644 easybuild/easyconfigs/t/Tombo/Tombo-1.5.1-foss-2023a.eb

diff --git a/easybuild/easyconfigs/t/Tombo/Tombo-1.5.1-foss-2023a.eb b/easybuild/easyconfigs/t/Tombo/Tombo-1.5.1-foss-2023a.eb
new file mode 100644
index 00000000000..b4191a47cf0
--- /dev/null
+++ b/easybuild/easyconfigs/t/Tombo/Tombo-1.5.1-foss-2023a.eb
@@ -0,0 +1,50 @@
+# Author: Pavel Grochal (INUITS)
+# License: GPLv2
+
+easyblock = 'PythonBundle'
+
+name = 'Tombo'
+version = '1.5.1'
+
+homepage = 'https://github.com/nanoporetech/tombo'
+description = """Tombo is a suite of tools primarily for the identification of modified nucleotides
+ from raw nanopore sequencing data."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('SciPy-bundle', '2023.07'),
+    ('h5py', '3.9.0'),
+    ('tqdm', '4.66.1'),
+    ('rpy2', '3.5.15'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('pyfaidx', '0.5.8', {
+        'checksums': ['58f0ff57a875af7e69a12cf1e7086efa4976919ac4dcebbc5f3def6fd4881d0d'],
+    }),
+    ('mappy', '2.28', {
+        'checksums': ['0ebf7a5d62bd668f5456028215e26176e180ca68161ac18d4f7b48045484cebb'],
+    }),
+    ('ont-tombo', version, {
+        'modulename': 'tombo',
+        'patches': ['Tombo-%(version)s_rpy2-v3.patch'],
+        'use_pip_extras': 'full',
+        'checksums': [
+            {'ont-tombo-1.5.1.tar.gz': 'f5ae8f4c5fc1ab212306ff14ae93fbd1c1034421148ff2e728f169f69a824380'},
+            {'Tombo-1.5.1_rpy2-v3.patch': '0d9e5e96aa741b70acbbddbf0d403f55878bdb956def57f1332a4b0d7582a8ff'},
+        ],
+    }),
+]
+
+sanity_pip_check = True
+
+sanity_check_commands = [
+    "tombo --help",
+    "tombo --version",
+]
+
+moduleclass = 'bio'