From 0682b706ea169a2f9eeb2b6113ffc1bb919f8c3a Mon Sep 17 00:00:00 2001 From: eead-csic-compbio Date: Fri, 5 May 2023 13:20:55 +0200 Subject: [PATCH] check that download_genomes_ncbi.pl still works with sample_genome.list, updated EST manual --- CHANGES.txt | 1 + manual_get_homologues-est.pdf | Bin 792262 -> 792521 bytes 2 files changed, 1 insertion(+) diff --git a/CHANGES.txt b/CHANGES.txt index 02dce96..8722595 100644 --- a/CHANGES.txt +++ b/CHANGES.txt @@ -405,3 +405,4 @@ 17032023: Release 22-282 of mcl is available, "but MCL itself is unchanged", we'll keep using mcl-14-137 22032023: annotate_cluster.pl -u produces unaligned complete sequences, flipped if required to facilitate multiple alignments 28032023: added more dependencies required for compiling R packages in install_R_deps.R +05052023: check that download_genomes_ncbi.pl still works with sample_genome.list diff --git a/manual_get_homologues-est.pdf b/manual_get_homologues-est.pdf index 047c80bffb9a4ac49a5e142f53cfb81475dafd0e..4e18cc5efda1a2b015ae22a27d32e1dc2212ca3b 100644 GIT binary patch delta 3024 zcmV;>3orD>tuV>2FpwnzIUtuofeI;qQ^AhYFc7`xD|}2OJZn3)V;^@*saUB9b_(u$sxqSS{6yx~edF$dX|GclbD&6P9g#J`%R)&aL{=$h7 zck(40((NZ_?pDRAI4K38yap?OO_sx2|D2ee{5+4;O)9}knh*FMn2{oBPP@7(qmGAYL{N@FIWO=c34&;@dI zY0j|-K5m2S^KRwisFsTc6!sF;Dtoz-b1b!C>-twY$Hy2dp~@d8%YD~hhn<_6@D5!{ z@m%EfamZ9!focAmDW=xVD_Dwr&TEbHt1TEl4ay9FukJUIzT`BMaRw8EJ_3h60s)6U0s@CV z0t1IW0tAOX0tJUY0tUA}0tbq}1Tio$GnYYu3Mqe9OK;pZ5WerP;86lBniNGng7%Q0 z-oOETNU~@SZVrmX-6blC8&T@U|31T)_Tf!i8!%_6;c(`gnU5xDhX{JVBLA^c_)8E) zMTL2mA3M}C8&ju9}vN; zD$&uJ_9(?wS%K7{&yelwOjyQoYVbVIr0IWVJ&7^qJi>?W&V@6Ip%r5Y@+hah4a`L} z?tEyU-mlQJwRk7hLn|k5Mo|ysn1|XYG-)XZ=gZH{ko9w{prughcDM< zymM!dd)e%r*eapjHPE&pphk`UmR5gsVv=gm78G&`ha6m2IVeG}*f=qyi`_tN_BIRn z(2IJ|;aok1p}9F>o%}ndu9d90)NgL~;r+VI&ZYxqgF$OTq_lLACiW*zC=}2uekW&y zM8EwWCp_ghTET9ITr38Z2reG17~g zop7`;nK~QI5QH^!Y~_^gY_NYd(uo0$wse}+PSgc+%gWFymMYwL>!gBxm{Xt)X9o<} zi6yK#2G`0Dg(9gThckm3o?} zSfra#9wxWxy9{XVDFf}kWF)}hW zH95D>3Jfg50_=t%E4F(e@YINXCO&pq-I67)f z(EI&NzO1$O-RJDH_jlJh&N=sASbB54lfsqLp$AQc!5UDOzjbOEj$4pGxI-Mq9aOLRT19Bl%dsWnp5 zEvo=ONw!mCRnZnuO>GY~Eq5!Zp>~)WPZZUHI%=cT^r#7_r#4GXyU_r)QM*7*+tdiS zWpbICcCraHmr|bt>!dAU2k9oTM!FNUl7Dg|e}!}xXd`8P{xa!qum`k*4zL&OH|HvK z%YC4e8625EM|uEsgM*+490I+d5A=h>U;qq)BVY&|1;gMN7y-w@32+jOf(g)NrCD0b z7#L?6^F&kN6gUlLz(p`=uHu?zu*Lo?(KOJsv(z;09MLS%d9VO3fF-aDE`b%W3V+zO zpyOUNSM@;m(C%v6IgdasaDsuO4H=78W>mwbAc65ONLyqLk`+aR6h+Ly-zA`9z_n0e zZuif+%4Sdls?GJbtA=`^4j@;k2PhS`0YnOz6Kc&3+|>-c@;r1vpRfZUO=tzE650T6 z1l$N{5t_}7zNZVIN#63`;_n|peDsjJ-jPNT>bkSicpIAYfLjx%ezu2D1#Xco?xegC>@ zoNwTK0~Uu-v*8{Mphb`tI26z&(TlDNU{X{U!4s|$-o_jbg0mf^4C68dK3&=`CCEh5in$NZGT?rF)#v-gA*3F zJ$&*pFl=$-HKiwc%8Nu(VBF%?2O5|FlNR6XS9%KQczA~<(-z-)Oan6jW0QG{-+y>f z`g3v~=*s6T{vg)C0$2i&c=e|AUdDg%o^)~#85?-K^R zfyfH~{;Cu)eFca?5r0UoGRuzZXnhu7m@ioNOp9t*=h4hpT6UpcHRSSG=c_Ec+^HJx zUyoeA+On&EsD^N!$MSWSeR9cJZmvNC80Kp&yVkB09eso4-hM`@UZ0JY8_OwGC&W{) zcc}c+n{yY?`w|I#i{;*^(hMZ@y!ZWHfOQ@deTU_{NAwfDFMmza1L@=sh+bkg!y%M^`T{^lM=f8Eg4` zL|U+U$)0FY3d#q9DD*k>f?Y+i|3*zC#DZAl3&;}qoU6v0Ih1OZmLa%II=EpdnP3%H zaLe>fxlYK|dM(%cKLHj*9QmSAw6(mA2{_+5ufarMr<>A&jm$pt?Z^F2*;LsWE_D8% zo`5CV*P2*`1kR}@lhjnl{9LlRZ!E~&_I-8$^=b|X?YPkc+1|qzq8$J%d6@77_ zNt2|pgf}l`#fb$bi&hC1ses$^;)YVprZ%1n@G=ERKkfwZJP?og9`T$a^*T?5rzUBFBS%yxL6GH0GSCa2?U0#l?k5u%VI7&&^eWE0OJq zxVgeGaNK^EA9DpV=9;y6a@sWGVGD|x-HDL{+px)+I|G?_AYtZ}9)Eu;^DLUr*4UcR za=+#ElJOf?loV`za-b}v@hi%OD*Bt_{_$`Adzm*Z86aJO0K5?OTz*QH;#+txkD%+c znoIgZ`6CrTtO|hp*nbju40H^9jHgZo0D08{(m`qc_Y-hV0om#zq)%^tp1aaf%^zcZ zN1$vJS1}S>L5N)5HENX^tuHzyw)xMRTQ({s*ePXpZtm_u|KmJ>P%vHk2(7d)jIj~9 zbrux2X8^w><;k86i4I3tQ^Axg2O>Kd*L_7qX76Nz?M5yB!J`2GY5G?4If#AtP39u3 z0}aQM6!&?%$Iu(*0pV(Qh>{4R4!p>%O@E$%x8&EI?~&*r-0pXL=w6dCXzv$vrIzsc z6vZBCEf*2xcTMvbkTMaq6ey3MD6?XmUxJgT)5PUp+Kn&?UDDe%liyetm^<#qdnCHi zHOE;q?J?$$@|24besjEYKWC~xbjif0K$t@45a}nY320!E&9a9N-gnI?%qd^xehDU5 z=LS3D)l^z~ILm&bQE!=_fu4lX<+O zqA_BL4-}AxO1LZhiX)G0%*-?N)*^WjuajnMT3Y#cSLQCY?HxRs{N5EVp_a5tQl?kP z{L55vj)xNpQ@ri?T~54s*#oQ04<%=|$=n{k&SNHx(vCq4cX;JJtLO)u{qyOl?}&M0 zAfeyNL5a*9VLTJd__ppRb$+aDhM?!B{eWN@ms)92lyk^D`xwAUT=?5SroZGkl{gtoNyhTpArv*s->|tGRU0F77uOyL8Yu zgv=Kjk1QnoKCjn%Kjqbm@DrA4f{IsY!nSQ4N|6#W4ePj~>GV?ENi3})3EdLQduGgH zmmH$^aop!M<@Sd7h_@}as!g~Wo7(>(3uDk8kEG~IWF@vIP%;O%CNPlnL#agub21~P z4k8k}-T^sw;u!BSXx(}TUyTW$hB{gUrLK!Yq0kv`_+Y30x2PN9gQ@ZuBh^u8Q&S95 zTl*5y6p7I^HP+EE(M4*hV{~=2G<9?gq%ZuxNyepEMg1OQi7}6B-{sr3hq2#TRc(2RC>D*d@v*(0_g@p?-Clw^y-wVMJ zzOx$yixbmp-s_$fwQC06xy>z&{qY5g5s1q+2t4jkNmdUVPiJFzZW7ZSRc+wqG?u-! 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