diff --git a/CHANGES.txt b/CHANGES.txt index cb82371..5d3a10d 100644 --- a/CHANGES.txt +++ b/CHANGES.txt @@ -234,3 +234,6 @@ 28112017: added option 'no_databases' to install.pl for building docker images 28112017: forgotten URI::Escape added to list of required Perl modules in EST manual 24122017: removes the invariant (core-genome) and singleton (cloud-genome) columns before computing distances @ hcluster_matrix.sh +03012018: updated example figure created with plot_matrix_heatmap.sh in the manual +03012018: renamed hcluster_matrix.sh to hcluster_pangenome_matrix.sh and updated install.pl, release.pl accordingly +03012018: added links to GET_PHYLOMARKERS diff --git a/install.pl b/install.pl index 2a6c9e6..f6c2b20 100755 --- a/install.pl +++ b/install.pl @@ -324,7 +324,7 @@ print "## checking optional software R (lib/phyTools: \$ENV{'EXE_R'})\n"; print "# required by compare_clusters.pl, parse_pangenome_matrix.pl -s, plot_pancore_matrix.pl and\n"; -print "# plot_matrix_heatmap.sh, hcluster_matrix.sh\n"; +print "# plot_matrix_heatmap.sh, hcluster_pangenome_matrix.sh\n"; $output = `$ENV{'EXE_R'} --version 2>&1`; if($output =~ /R version/){ print ">> OK\n"; } else diff --git a/manual_get_homologues-est.pdf b/manual_get_homologues-est.pdf index 127fd56..d3850a3 100644 Binary files a/manual_get_homologues-est.pdf and b/manual_get_homologues-est.pdf differ diff --git a/manual_get_homologues.pdf b/manual_get_homologues.pdf index c74d077..c958c67 100644 Binary files a/manual_get_homologues.pdf and b/manual_get_homologues.pdf differ