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orphans.php
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orphans.php
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<?php
/*
* orphans.php
*
* Display information about missing link records
*
*/
include_once 'checkinstance.php';
if ( ($_SESSION['userlevel'] != 3) &&
($_SESSION['userlevel'] != 4) &&
($_SESSION['userlevel'] != 5) ) // admin and super admin only
{
header('Location: index.php');
exit();
}
include 'config.php';
include 'db.php';
// ini_set('display_errors', 'On');
// Start displaying page
$page_title = "Orphans";
$css = 'css/admin.css';
$text = "";
include 'header.php';
?>
<!-- Begin page content -->
<div id='content'>
<h1 class="title">Orphans</h1>
<!-- Place page content here -->
<?php
$text .= orphan_info($link);
echo $text;
?>
</div>
<?php
include 'footer.php';
exit();
// A function to retrieve orphan information
function orphan_info($link)
{
// Assemble tables
$text = orphan_projects($link);
$text .= orphan_experiments1($link);
$text .= orphan_experiments2($link);
$text .= orphan_experiments3($link);
$text .= orphan_rawdata($link);
$text .= orphan_solutionBuffer($link);
$text .= orphan_solutionAnalyte($link);
$text .= orphan_editedData($link);
$text .= orphan_models1($link);
$text .= orphan_models2($link);
$text .= orphan_noise1($link);
$text .= orphan_noise2($link);
$text .= orphan_HPCRequests($link);
$text .= orphan_HPCResults($link);
return $text;
}
function orphan_projects($link)
{
// Projects that don't belong to anybody
$query = "SELECT p.projectID, description, status, pp.personID " .
"FROM project p " .
"LEFT JOIN projectPerson pp ON ( p.projectID = pp.projectID ) " .
"LEFT JOIN people ON ( pp.personID = people.personID ) " .
"WHERE ( pp.projectID IS NULL ) " .
"|| ( people.personID IS NULL ) " .
"ORDER BY p.projectID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Projects with Missing Ownership</caption>
<thead>
<tr><th>ID</th>
<th>Description</th>
<th>Status</th>
<th>Person ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan projects found</td></tr>\n";
else
{
while ( list( $ID, $description, $status, $personID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$description</td>
<td>$status</td>
<td>$personID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_experiments1($link)
{
// Experiments with missing projects
$query = "SELECT experimentID, experimentGUID, runID, type, e.projectID, dateUpdated " .
"FROM experiment e LEFT JOIN project " .
"ON ( e.projectID = project.projectID ) " .
"WHERE project.projectID IS NULL " .
"ORDER BY experimentID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Runs (experiments) with Missing Projects</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Run ID</th>
<th>Type</th>
<th>ProjectID</th>
<th>Updated</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan raw data found</td></tr>\n";
else
{
while ( list( $ID, $GUID, $runID, $type, $projectID, $updated ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$runID</td>
<td>$type</td>
<td>$projectID</td>
<td>$updated</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_experiments2($link)
{
// Experiments that don't belong to anybody
$query = "SELECT e.experimentID, runID, dateUpdated, ep.personID " .
"FROM experiment e " .
"LEFT JOIN experimentPerson ep ON ( e.experimentID = ep.experimentID ) " .
"LEFT JOIN people ON ( ep.personID = people.personID ) " .
"WHERE ( ep.experimentID IS NULL ) " .
"|| ( people.personID IS NULL ) " .
"ORDER BY e.experimentID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Runs ( experiments ) with Missing Ownership</caption>
<thead>
<tr><th>ID</th>
<th>Run ID</th>
<th>Updated</th>
<th>Person ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan runs found</td></tr>\n";
else
{
while ( list( $ID, $runID, $updated, $personID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$runID</td>
<td>$updated</td>
<td>$personID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_experiments3($link)
{
// Experiments that refer to a nonexistent solution
$query = "SELECT e.experimentID, runID, dateUpdated, esc.solutionID " .
"FROM experiment e " .
"LEFT JOIN experimentSolutionChannel esc ON ( e.experimentID = esc.experimentID ) " .
"LEFT JOIN solution ON ( esc.solutionID = solution.solutionID ) " .
"WHERE ( esc.experimentID IS NULL ) " .
"|| ( solution.solutionID IS NULL ) " .
"ORDER BY e.experimentID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Runs ( experiments ) with Missing Solutions</caption>
<thead>
<tr><th>ID</th>
<th>Run ID</th>
<th>Updated</th>
<th>Solution ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan runs found</td></tr>\n";
else
{
while ( list( $ID, $runID, $updated, $solutionID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$runID</td>
<td>$updated</td>
<td>$solutionID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_rawdata($link)
{
$query = "SELECT rawDataID, rawDataGUID, filename, rawData.experimentID " .
"FROM rawData LEFT JOIN experiment " .
"ON (rawData.experimentID = experiment.experimentID ) " .
"WHERE experiment.experimentID IS NULL " .
"ORDER BY filename ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Raw Data with Missing Run Records</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Filename</th>
<th>Experiment ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan raw data found</td></tr>\n";
else
{
while ( list( $ID, $GUID, $filename, $experimentID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$filename</td>
<td>$experimentID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_solutionBuffer($link)
{
$query = "SELECT s.solutionID, solutionGUID, s.description, sb.bufferID " .
"FROM solution s " .
"LEFT JOIN solutionBuffer sb ON ( s.solutionID = sb.solutionID ) " .
"LEFT JOIN buffer ON ( sb.bufferID = buffer.bufferID ) " .
"WHERE ( sb.solutionID IS NULL ) " .
"|| ( buffer.bufferID IS NULL ) " .
"ORDER BY s.solutionID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Solutions with Missing Buffers</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Description</th>
<th>Buffer ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan solution-buffer links found</td></tr>\n";
else
{
while ( list( $ID, $GUID, $description, $bufferID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$description</td>
<td>$bufferID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_solutionAnalyte($link)
{
$query = "SELECT s.solutionID, solutionGUID, s.description, sa.analyteID " .
"FROM solution s " .
"LEFT JOIN solutionAnalyte sa ON ( s.solutionID = sa.solutionID ) " .
"LEFT JOIN analyte ON ( sa.analyteID = analyte.analyteID ) " .
"WHERE ( sa.solutionID IS NULL ) " .
"|| ( analyte.analyteID IS NULL ) " .
"ORDER BY s.solutionID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Solutions with Missing Analytes</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Description</th>
<th>Analyte ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan solution-analyte links found</td></tr>\n";
else
{
while ( list( $ID, $GUID, $description, $analyteID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$description</td>
<td>$analyteID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_editedData($link)
{
$query = "SELECT editedDataID, editedData.rawDataID, editGUID, editedData.filename " .
"FROM editedData LEFT JOIN rawData " .
"ON (editedData.rawDataID = rawData.rawDataID ) " .
"WHERE rawData.rawDataID IS NULL " .
"AND editedDataID != 1 " . // the special "unassigned" ID
"ORDER BY editedDataID, filename ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Edit Profiles with Missing Raw Data</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Filename</th>
<th>Raw ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='4'>No orphan edit profiles found</td></tr>\n";
else
{
while ( list ( $editID, $rawID, $GUID, $filename ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$editID</td>
<td>$GUID</td>
<td>$filename</td>
<td>$rawID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_models1($link)
{
// Models linked to missing edit profiles
$query = "SELECT modelID, model.editedDataID, modelGUID, variance, meniscus " .
"FROM model LEFT JOIN editedData " .
"ON ( model.editedDataID = editedData.editedDataID ) " .
"WHERE editedData.editedDataID IS NULL " .
"ORDER BY modelID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Models with missing Edit Profiles</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Variance</th>
<th>Meniscus</th>
<th>Edit ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='5'>No orphan models found</td></tr>\n";
else
{
while ( list ( $modelID, $editID, $GUID, $variance, $meniscus ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$modelID</td>
<td>$GUID</td>
<td>$variance</td>
<td>$meniscus</td>
<td>$editID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_models2($link)
{
// models that don't belong to anybody
$query = "SELECT m.modelID, editedDataID, modelGUID, variance, meniscus, mp.personID " .
"FROM model m " .
"LEFT JOIN modelPerson mp ON ( m.modelID = mp.modelID ) " .
"LEFT JOIN people ON ( mp.personID = people.personID ) " .
"WHERE ( mp.personID IS NULL ) " .
"|| ( people.personID IS NULL ) " .
"ORDER BY m.modelID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Models with missing Ownership</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Variance</th>
<th>Meniscus</th>
<th>Edit ID</th>
<th>Person ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='5'>No orphan models found</td></tr>\n";
else
{
while ( list ( $modelID, $editID, $GUID, $variance, $meniscus, $personID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$modelID</td>
<td>$GUID</td>
<td>$variance</td>
<td>$meniscus</td>
<td>$editID</td>
<td>$personID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_noise1($link)
{
// Orphan noise ( relating to models )
$query = "SELECT noiseID, noiseGUID, noise.editedDataID, noise.modelID, noise.modelGUID, noiseType " .
"FROM noise LEFT JOIN model " .
"ON ( noise.modelID = model.modelID ) " .
"WHERE model.modelID IS NULL " .
"ORDER BY noiseID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Noise Linked to Missing Models</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Model ID</th>
<th>Model GUID</th>
<th>Type</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='5'>No orphan noise records found</td></tr>\n";
else
{
while ( list ( $noiseID, $GUID, $editID, $modelID, $modelGUID, $type ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$noiseID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$modelID</td>
<td>$modelGUID</td>
<td>$type</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_noise2($link)
{
// Orphan noise files ( relating to edit profiles )
$query = "SELECT noiseID, noiseGUID, noise.editedDataID, modelID, modelGUID, noiseType " .
"FROM noise LEFT JOIN editedData " .
"ON ( noise.editedDataID = editedData.editedDataID ) " .
"WHERE editedData.editedDataID IS NULL " .
"ORDER BY noiseID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Noise Linked to Missing Edit Profiles</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Model ID</th>
<th>Model GUID</th>
<th>Type</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='6'>No orphan noise records found</td></tr>\n";
else
{
while ( list ( $noiseID, $GUID, $editID, $modelID, $modelGUID, $type ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$noiseID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$modelID</td>
<td>$modelGUID</td>
<td>$type</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_HPCRequests($link)
{
$query = "SELECT HPCAnalysisRequestID, HPCAnalysisRequestGUID, editXMLFilename, " .
"submitTime, clusterName, method, r.experimentID " .
"FROM HPCAnalysisRequest r LEFT JOIN experiment " .
"ON ( r.experimentID = experiment.experimentID ) " .
"WHERE experiment.experimentID IS NULL " .
"ORDER BY HPCAnalysisRequestID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Requests</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>XML Filename</th>
<th>Submit</th>
<th>Cluster</th>
<th>Method</th>
<th>Experiment ID</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='6'>No orphan HPC requests found</td></tr>\n";
else
{
while ( list( $ID, $GUID, $filename, $submit, $cluster, $method, $expID ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$filename</td>
<td>$submit</td>
<td>$cluster</td>
<td>$method</td>
<td>$expID</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
function orphan_HPCResults($link)
{
$query = "SELECT HPCAnalysisResultID, r.HPCAnalysisRequestID, gfacID, queueStatus, updateTime " .
"FROM HPCAnalysisResult r LEFT JOIN HPCAnalysisRequest q " .
"ON ( r.HPCAnalysisRequestID = q.HPCAnalysisRequestID ) " .
"WHERE q.HPCAnalysisRequestID IS NULL " .
"ORDER BY HPCAnalysisResultID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Results</caption>
<thead>
<tr><th>ID</th>
<th>Request ID</th>
<th>gfac ID</th>
<th>Status</th>
<th>Updated</th>
</tr>
</thead>
<tbody>
HTML;
if ( mysqli_num_rows( $result ) == 0 )
$text .= " <tr><td colspan='5'>No orphan HPC results found</td></tr>\n";
else
{
while ( list( $ID, $requestID, $gfacID, $status, $updated ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$ID</td>
<td>$requestID</td>
<td>$gfacID</td>
<td>$status</td>
<td>$updated</td>
</tr>
HTML;
}
}
$text .= "</tbody>\n\n" .
"</table>\n";
return $text;
}
?>