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runID_info.php
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runID_info.php
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<?php
/*
* runID_info.php
*
* All the linkages for a particular runID
*
*/
include_once 'checkinstance.php';
if ( ($_SESSION['userlevel'] != 2) && // data analyst can see own runID's
($_SESSION['userlevel'] != 3) && // admin and super admin can see all
($_SESSION['userlevel'] != 4) &&
($_SESSION['userlevel'] != 5) )
{
header('Location: index.php');
exit();
}
include 'config.php';
include 'db.php';
include 'lib/utility.php';
include $class_dir . 'experiment_status.php';
// Start displaying page
$page_title = "Info by Run ID";
$css = 'css/admin.css';
include 'header.php';
global $uses_airavata;
global $link;
?>
<!-- Begin page content -->
<div id='content'>
<h1 class="title">Info by Run ID</h1>
<!-- Place page content here -->
<?php
if ( isset( $_POST['experimentID'] ) )
{
$text = experiment_select( 'experimentID', $_POST['experimentID'] );
if ( $_POST['experimentID'] != -1 ) // -1 is Please select...
$text .= runID_info( $_POST['experimentID'] );
}
else if ( isset( $_GET['RequestID'] ) )
$text = HPCDetail( $_GET['RequestID'] );
else
$text = experiment_select( 'experimentID' );
echo $text;
?>
</div>
<?php
include 'footer.php';
exit();
// Function to create a dropdown for available runIDs
function experiment_select( $select_name, $current_ID = NULL )
{
global $link;
$myID = $_SESSION['id'];
$users_clause = ( $_SESSION['userlevel'] > 2 ) ? "" : "AND people.personID = $myID ";
$query = "SELECT experimentID, runID, lname " .
"FROM experiment, projectPerson, people " .
"WHERE experiment.projectID = projectPerson.projectID " .
"AND projectPerson.personID = people.personID " .
$users_clause .
"ORDER BY lname, runID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) == 0 ) return "";
$text = "<form action='{$_SERVER['PHP_SELF']}' method='post'>\n" .
" <select name='$select_name' size='1' onchange='form.submit();'>\n" .
" <option value=-1>Please select...</option>\n";
while ( list( $experimentID, $runID, $lname ) = mysqli_fetch_array( $result ) )
{
$selected = ( $current_ID == $experimentID ) ? " selected='selected'" : "";
$text .= " <option value='$experimentID'$selected>$lname: $runID</option>\n";
}
$text .= " </select>\n" .
"</form>\n";
return $text;
}
// A function to retrieve information about that runID
function runID_info( $experimentID )
{
global $link;
$query = "SELECT people.personID, personGUID, lname, fname, email " .
"FROM experiment, projectPerson, people " .
"WHERE experiment.experimentID = $experimentID " .
"AND experiment.projectID = projectPerson.projectID " .
"AND projectPerson.personID = people.personID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
list( $ID, $GUID, $lname, $fname, $email ) = mysqli_fetch_array( $result );
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Investigator Information</caption>
<tr><th>ID:</th>
<td>$ID</td></tr>
<tr><th>GUID:</th>
<td>$GUID</td></tr>
<tr><th>Name:</th>
<td>$fname $lname</td></tr>
<tr><th>Email:</th>
<td>$email</td></tr>
</table>
HTML;
$query = "SELECT experimentGUID, coeff1, coeff2, type, runType " .
"FROM experiment, rotorCalibration " .
"WHERE experimentID = $experimentID " .
"AND experiment.rotorCalibrationID = rotorCalibration.rotorCalibrationID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
list( $GUID, $coeff1, $coeff2, $type, $runType ) = mysqli_fetch_array( $result );
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Run Information</caption>
<tr><th>GUID:</th>
<td>$GUID</td></tr>
<tr><th>Rotor stretch coeff 1:</th>
<td>$coeff1</td></tr>
<tr><th>Rotor stretch coeff 2:</th>
<td>$coeff2</td></tr>
<tr><th>Experiment type:</th>
<td>$type</td></tr>
<tr><th>Run Type:</th>
<td>$runType</td></tr>
</table>
HTML;
$query = "SELECT rawDataID, rawDataGUID, filename, solutionID " .
"FROM rawData " .
"WHERE experimentID = $experimentID " .
"ORDER BY filename ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) == 0 )
return $text;
$rawIDs = array();
$solutionIDs = array();
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Raw Data</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Filename</th>
<th>Solution</th>
</tr>
</thead>
<tbody>
HTML;
while ( list( $ID, $GUID, $filename, $solutionID ) = mysqli_fetch_array( $result ) )
{
$rawIDs[] = $ID;
$solutionIDs[] = $solutionID;
$text .= <<<HTML
<tr><td>$ID</td>
<td>$GUID</td>
<td>$filename</td>
<td>$solutionID</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
$rawIDs_csv = implode( ", ", $rawIDs );
$query = "SELECT editedDataID, rawDataID, editGUID, filename " .
"FROM editedData " .
"WHERE rawDataID IN ( $rawIDs_csv ) " .
"ORDER BY editedDataID, filename ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) == 0 )
return $text;
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Edit Profiles</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Filename</th>
<th>Raw ID</th>
</tr>
</thead>
<tbody>
HTML;
$editIDs = array();
while ( list ( $editID, $rawID, $GUID, $filename ) = mysqli_fetch_array( $result ) )
{
$editIDs[] = $editID;
$text .= <<<HTML
<tr><td>$editID</td>
<td>$GUID</td>
<td>$filename</td>
<td>$rawID</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
$editIDs_csv = implode( ", ", $editIDs );
$query = "SELECT model.modelID, editedDataID, modelGUID, variance, meniscus, personID " .
"FROM model LEFT JOIN modelPerson " .
"ON ( model.modelID = modelPerson.modelID ) " .
"WHERE editedDataID IN ( $editIDs_csv ) " .
"ORDER BY modelID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Models</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Variance</th>
<th>Meniscus</th>
<th>Owner ID</th>
</tr>
</thead>
<tbody>
HTML;
$modelIDs = array();
while ( list ( $modelID, $editID, $GUID, $variance, $meniscus, $personID ) = mysqli_fetch_array( $result ) )
{
$modelIDs[] = $modelID;
$text .= <<<HTML
<tr><td>$modelID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$variance</td>
<td>$meniscus</td>
<td>$personID</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
if ( count( $modelIDs ) > 0 )
{
$modelIDs_csv = implode( ", ", $modelIDs );
$query = "SELECT noiseID, noiseGUID, editedDataID, modelID, modelGUID, noiseType " .
"FROM noise " .
"WHERE modelID IN ( $modelIDs_csv ) " .
"ORDER BY noiseID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Noise Linked to Models</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Model ID</th>
<th>Model GUID</th>
<th>Type</th>
</tr>
</thead>
<tbody>
HTML;
while ( list ( $noiseID, $GUID, $editID, $modelID, $modelGUID, $type ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$noiseID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$modelID</td>
<td>$modelGUID</td>
<td>$type</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
}
$query = "SELECT noiseID, noiseGUID, editedDataID, modelID, modelGUID, noiseType " .
"FROM noise " .
"WHERE editedDataID IN ( $editIDs_csv ) " .
"ORDER BY noiseID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Noise Linked to Edit Profiles</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Model ID</th>
<th>Model GUID</th>
<th>Type</th>
</tr>
</thead>
<tbody>
HTML;
while ( list ( $noiseID, $GUID, $editID, $modelID, $modelGUID, $type ) = mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$noiseID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$modelID</td>
<td>$modelGUID</td>
<td>$type</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
$reportIDs = array();
$query = "SELECT reportID, reportGUID, title " .
"FROM report " .
"WHERE experimentID = $experimentID " .
"ORDER BY reportID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Reports Related to This Experiment</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Title</th>
</tr>
</thead>
<tbody>
HTML;
while ( list ( $reportID, $GUID, $title ) = mysqli_fetch_array( $result ) )
{
$reportIDs[] = $reportID;
$text .= <<<HTML
<tr><td>$reportID</td>
<td>$GUID</td>
<td>$title</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
$reportTripleIDs = array();
if ( ! empty( $reportIDs ) )
{
$reportIDs_csv = implode( ",", $reportIDs );
$query = "SELECT reportTripleID, reportTripleGUID, resultID, triple, dataDescription, reportID " .
"FROM reportTriple " .
"WHERE reportID IN ( $reportIDs_csv ) " .
"ORDER BY reportID, reportTripleID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Report Triples Related to Reports</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Result ID</th>
<th>Triple</th>
<th>Description</th>
<th>Report ID</th>
</tr>
</thead>
<tbody>
HTML;
while ( list ( $reportTripleID, $GUID, $resultID, $triple, $dataDesc, $rptID )
= mysqli_fetch_array( $result ) )
{
$reportTripleIDs[] = $reportTripleID;
$text .= <<<HTML
<tr><td>$reportTripleID</td>
<td>$GUID</td>
<td>$resultID</td>
<td>$triple</td>
<td>$dataDesc</td>
<td>$rptID</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
}
if ( ! empty( $reportTripleIDs ) )
{
$reportTripleIDs_csv = implode( ",", $reportTripleIDs );
$query = "SELECT d.reportDocumentID, reportDocumentGUID, editedDataID, label, " .
"filename, analysis, subAnalysis, documentType, l.reportTripleID " .
"FROM documentLink l, reportDocument d " .
"WHERE reportTripleID IN ( $reportTripleIDs_csv ) " .
"AND l.reportDocumentID = d.reportDocumentID " .
"ORDER BY reportTripleID, reportDocumentID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>Report Documents Related to Triples</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>Edit ID</th>
<th>Label/Filename</th>
<th>Anal/Sub/DocType</th>
<th>Trip ID</th>
</tr>
</thead>
<tbody>
HTML;
while ( list ( $reportDocumentID, $GUID, $editID, $label, $filename,
$analysis, $subAnal, $docType, $tripID )
= mysqli_fetch_array( $result ) )
{
$text .= <<<HTML
<tr><td>$reportDocumentID</td>
<td>$GUID</td>
<td>$editID</td>
<td>$label/$filename</td>
<td>$analysis/$subAnal/$docType</td>
<td>$tripID</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
}
$query = "SELECT HPCAnalysisRequestID, HPCAnalysisRequestGUID, editXMLFilename, " .
"submitTime, clusterName, method " .
"FROM HPCAnalysisRequest " .
"WHERE experimentID = $experimentID " .
"ORDER BY HPCAnalysisRequestID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) == 0 )
return $text;
$requestIDs = array();
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Requests</caption>
<thead>
<tr><th>ID</th>
<th>GUID</th>
<th>XML Filename</th>
<th>Submit</th>
<th>Cluster</th>
<th>Method</th>
</tr>
</thead>
<tbody>
HTML;
while ( list( $ID, $GUID, $filename, $submit, $cluster, $method ) = mysqli_fetch_array( $result ) )
{
$requestIDs[] = $ID;
$text .= <<<HTML
<tr><td><a href='{$_SERVER['PHP_SELF']}?RequestID=$ID'>$ID</a></td>
<td>$GUID</td>
<td>$filename</td>
<td>$submit</td>
<td>$cluster</td>
<td>$method</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
$requestIDs_csv = implode( ", ", $requestIDs );
$query = "SELECT HPCAnalysisResultID, HPCAnalysisRequestID, gfacID, queueStatus, updateTime " .
"FROM HPCAnalysisResult " .
"WHERE HPCAnalysisRequestID IN ( $requestIDs_csv ) " .
"ORDER BY HPCAnalysisResultID ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) != 0 )
{
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Results</caption>
<thead>
<tr><th>ID</th>
<th>Request ID</th>
<th>gfac ID</th>
<th>Status</th>
<th>Updated</th>
</tr>
</thead>
<tbody>
HTML;
$incomplete = array();
while ( list( $ID, $requestID, $gfacID, $status, $updated ) = mysqli_fetch_array( $result ) )
{
if ( $status != 'completed' )
$incomplete[] = $gfacID;
$text .= <<<HTML
<tr><td>$ID</td>
<td>$requestID</td>
<td>$gfacID</td>
<td>$status</td>
<td>$updated</td>
</tr>
HTML;
}
$text .= "</tbody>\n\n" .
"</table>\n";
}
if ( empty( $incomplete ) )
return $text;
// Now switch over to the global db
global $globaldbhost, $globaldbuser, $globaldbpasswd, $globaldbname;
$globaldb = mysqli_connect( $globaldbhost, $globaldbuser, $globaldbpasswd, $globaldbname );
if ( ! $globaldb )
{
$text .= "<p>Cannot open global database on $globaldbhost : $globaldbname</p>\n";
return $text;
}
$text .= <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>GFAC Status</caption>
<thead>
<tr><th>gfacID</th>
<th>Cluster</th>
<th>DB</th>
<th>Status</th>
<th>Message</th>
<th>Updated</th>
</tr>
</thead>
<tbody>
HTML;
$in_queue = 0;
foreach ( $incomplete as $gfacID )
{
$query = "SELECT cluster, us3_db, status, queue_msg, time " .
"FROM analysis " .
"WHERE gfacID = '$gfacID' ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link) );
if ( mysqli_num_rows( $result ) == 1 )
{
$in_queue++;
list( $cluster, $db, $status, $msg, $time ) = mysqli_fetch_array( $result );
$text .= <<<HTML
<tr><td>$gfacID</td>
<td>$cluster</td>
<td>$db</td>
<td>$status</td>
<td>$msg</td>
<td>$time</td>
</tr>
HTML;
}
}
if ( $in_queue == 0 )
$text .= "<tr><td colspan='6'>No local jobs currently in the queue</td></tr>\n";
$text .= "</tbody>\n\n" .
"</table>\n";
mysqli_close( $globaldb );
return $text;
}
function HPCDetail( $requestID )
{
global $link;
$query = "SELECT * FROM HPCAnalysisRequest WHERE HPCAnalysisRequestID=$requestID";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link));
$row = mysqli_fetch_assoc( $result );
$row['requestXMLFile'] = '<pre>' . htmlentities( $row['requestXMLFile'] ) . '</pre>';
// Save for later
$requestGUID = $row['HPCAnalysisRequestGUID'];
$cluster = $row['clusterName'];
#var_dump($cluster);
$text = <<<HTML
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Request Detail</caption>
HTML;
foreach ($row as $key => $value)
{
$text .= " <tr><th>$key</th><td>$value</td></tr>\n";
}
$text .= "</table>\n";
$query = "SELECT * FROM HPCAnalysisResult WHERE HPCAnalysisRequestID=$requestID";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link));
$row = mysqli_fetch_assoc( $result );
$row['jobfile'] = '<pre>' . htmlentities( $row['jobfile'] ) . '</pre>';
// Get GFAC job status
global $uses_airavata;
if ( $uses_airavata === true )
{
$row['gfacStatus'] = nl2br( getExperimentStatus( $row['gfacID'] ) );
}
else
{
$row['gfacStatus'] = nl2br( getJobstatus( $row['gfacID'] ) );
}
// Get queue messages from disk directory, if it still exists
global $submit_dir;
global $dbname;
$msg_filename = "$submit_dir$requestGUID/$dbname-$requestID-messages.txt";
$queue_msgs = false;
if ( file_exists( $msg_filename ) )
{
$queue_msgs = file_get_contents( $msg_filename );
$len_msgs = strlen( $queue_msgs );
$queue_msgs = '<pre>' . $queue_msgs . '</pre>';
}
// Get resulting model and noise information
if ( ! empty( $resultID ) )
{
$resultID = $row['HPCAnalysisResultID'];
$models = array();
$noise = array();
$query = "SELECT resultID FROM HPCAnalysisResultData " .
"WHERE HPCAnalysisResultID = $resultID " .
"AND HPCAnalysisResultType = 'model' ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link));
$models = mysqli_fetch_row( $result ); // An array with all of them
if ( $models !== false )
$row['modelIDs'] = implode( ", ", $models );
$query = "SELECT resultID FROM HPCAnalysisResultData " .
"WHERE HPCAnalysisResultID = $resultID " .
"AND HPCAnalysisResultType = 'noise' ";
$result = mysqli_query( $link, $query )
or die( "Query failed : $query<br />\n" . mysqli_error($link));
$noise = mysqli_fetch_row( $result ); // An array with all of them
if ( $noise !== false )
$row['noiseIDs'] = implode( ", ", $noise );
}
$text .= <<<HTML
<a name='runDetail'></a>
<table cellspacing='0' cellpadding='0' class='admin'>
<caption>HPC Result Detail</caption>
HTML;
foreach ($row as $key => $value)
{
$text .= " <tr><th>$key</th><td>$value</td></tr>\n";
}
if ( $queue_msgs !== false )
{
$linkmsg = "<a href='{$_SERVER[ 'PHP_SELF' ]}?RequestID=$requestID&msgs=t#runDetail'>Length Messages</a>";
$text .= " <tr><th>$linkmsg</th><td>$len_msgs</td></tr>\n";
if ( isset( $_GET[ 'msgs' ] ) )
$text .= " <tr><th>Queue Messages</th><td>$queue_msgs</td></tr>\n";
}
$text .= "</table>\n";
return $text;
}
?>