From 655afc876037dc81951c2370bfb48e2ce5e0321b Mon Sep 17 00:00:00 2001 From: Gerald Walter Irsiegler Date: Tue, 10 Dec 2024 11:01:26 +0100 Subject: [PATCH 1/2] Update: urls to 1.2.0, Fix: some spelling errors, missing data argument in the save_result notebook --- demos/workspaces/demo-create-workspace.md | 52 + demos/workspaces/demo-load-data.ipynb | 4 +- demos/workspaces/demo-load-data.md | 109 + demos/workspaces/demo-register-user.ipynb | 10 +- demos/workspaces/demo-register-user.md | 69 + .../workspaces/demo-register-workspace.ipynb | 6 +- demos/workspaces/demo-register-workspace.md | 79 + demos/workspaces/demo-save-results.ipynb | 32 +- demos/workspaces/demo-save-results.md | 78 + demos/workspaces/demo-share-workspace.ipynb | 6 +- demos/workspaces/demo-share-workspace.md | 58 + demos/workspaces/demo-show-files.ipynb | 8 +- demos/workspaces/demo-show-files.md | 54 + demos/workspaces/demo-stac-modify.ipynb | 6 +- demos/workspaces/demo-stac-modify.md | 101 + .../workspaces/demo-workspace-providers.ipynb | 2 +- demos/workspaces/demo-workspace-providers.md | 20 + poetry.lock | 6503 +++++++++++------ pyproject.toml | 10 +- 19 files changed, 5042 insertions(+), 2165 deletions(-) create mode 100644 demos/workspaces/demo-create-workspace.md create mode 100644 demos/workspaces/demo-load-data.md create mode 100644 demos/workspaces/demo-register-user.md create mode 100644 demos/workspaces/demo-register-workspace.md create mode 100644 demos/workspaces/demo-save-results.md create mode 100644 demos/workspaces/demo-share-workspace.md create mode 100644 demos/workspaces/demo-show-files.md create mode 100644 demos/workspaces/demo-stac-modify.md create mode 100644 demos/workspaces/demo-workspace-providers.md diff --git a/demos/workspaces/demo-create-workspace.md b/demos/workspaces/demo-create-workspace.md new file mode 100644 index 0000000..b2a8f0c --- /dev/null +++ b/demos/workspaces/demo-create-workspace.md @@ -0,0 +1,52 @@ +## User Story: Create EODC Workspace + +John wants to create a user workspace at EODC, as he does not have a object-storage solution himself. + +It's a very simple task to provision a workspace at EODC, provided that you are already an openEO user. + +All you need to do in order to create a workspace from scratch is post to the /workspaces endpoint +in the openEO API with a body consisting of a create intent and the preferred title of your workspace. + +like so: + +{ + 'intent':'create', + 'title':'Example' +} + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + + +```python +import requests + +WORKSPACE_NAME = "" + +request_body = { + "intent": "create", + "title": WORKSPACE_NAME +} + +response = requests.post( + url=f"https://openeo.eodc.eu/openeo/1.1.0/workspaces", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, + json=request_body +) +``` + +The responses content will contain your s3 credentials which you can then use to interact with your newly created workspace. + + +```python +response.content +``` diff --git a/demos/workspaces/demo-load-data.ipynb b/demos/workspaces/demo-load-data.ipynb index d44d3cb..0c50920 100644 --- a/demos/workspaces/demo-load-data.ipynb +++ b/demos/workspaces/demo-load-data.ipynb @@ -21,7 +21,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -204,7 +204,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.0" + "version": "3.10.12" } }, "nbformat": 4, diff --git a/demos/workspaces/demo-load-data.md b/demos/workspaces/demo-load-data.md new file mode 100644 index 0000000..bd0b494 --- /dev/null +++ b/demos/workspaces/demo-load-data.md @@ -0,0 +1,109 @@ +## User Story: Load Data + +Loading your user-collections is a simple process, in order to ensure this notebook works, make sure to already have results of a job saved +in your workspace so we can load it here. +If you don't you can check out the save result demo notebook first. + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + +In order to load a user collection, we have to first find out the collection id, we can do this by listing the stac collections within the workspace using +the list_stac_collections(WORKSPACE_NAME) function. This function returns us a list of tuples consisting of the collection_id and the path to the stac collection json. + + +```python +from eodc.workspace import CephAdapter, EODC_CEPH_URL + +# Set these variables to your own. + +WORKSPACE_NAME = "" + +S3_ENDPOINT = EODC_CEPH_URL +S3_ACCESS_KEY = "" +S3_SECRET_KEY = "" + +adapter: CephAdapter = CephAdapter(S3_ENDPOINT, S3_ACCESS_KEY, S3_SECRET_KEY) + +collections = adapter.list_stac_collections(WORKSPACE_NAME) + +collections +``` + +Now you can set your url manually or get it via the list_stac_collections return value. + + +```python +# URL = "" + +collection_id = collections[0][0] + +collection = collections[0][-1] + +URL = collection.links[1].absolute_href + +URL +``` + +You can also check the available STAC items of your given collection beforehand by using the get_stac_items function of the workspace adapter. + + +```python +items = adapter.get_stac_items(workspace_name=WORKSPACE_NAME, collection_id=collection_id) + +items +``` + +We are also defaulting to the same spatial_extent and the same temporal_extent as in the save result notebook, feel free to change these to fit your use case. + +If you want to check the full extent of your user collection you can use the following code: + + +```python +print(adapter.get_collection(WORKSPACE_NAME, collection_id).extent.spatial.bboxes) # This prints the maximum bounding box around all items in the STAC collection +print(adapter.get_collection(WORKSPACE_NAME, collection_id).extent.temporal.intervals) # This prints the maximum temporal extent of all items in the STAC collection +``` + +Now we can start a job with the corresponding url in the load_stac node. + +This will load results from a previous job which we can then further transform and use as we like. + + +```python +collection = connection.load_stac( + url=URL, + spatial_extent={ + "west": 16.156771491786476, + "east": 16.59018048465475, + "south": 48.08419286799747, + "north": 48.34670064966687, + }, + temporal_extent=["2019-01-01T00:00:00Z", "2019-01-31T00:00:00Z"] +) + +result = collection.save_result(format="netCDF") +``` + +Run this to start the job. + + +```python +job = result.create_job() + +job.start() +``` + +Run this to check the status of your job. + + +```python +job # Execute this to check on your jobs progress +``` + +Once the job has run through you can check the results! diff --git a/demos/workspaces/demo-register-user.ipynb b/demos/workspaces/demo-register-user.ipynb index 2677f4d..cb5a71f 100644 --- a/demos/workspaces/demo-register-user.ipynb +++ b/demos/workspaces/demo-register-user.ipynb @@ -21,7 +21,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -43,7 +43,7 @@ "import requests\n", "\n", "response = requests.post(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/user\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/user\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -70,7 +70,7 @@ "import requests\n", "\n", "response = requests.delete(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/user\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/user\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -97,7 +97,7 @@ "import requests\n", "\n", "response = requests.get(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/user\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/user\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -123,7 +123,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.0rc1" + "version": "3.10.12" } }, "nbformat": 4, diff --git a/demos/workspaces/demo-register-user.md b/demos/workspaces/demo-register-user.md new file mode 100644 index 0000000..1c35612 --- /dev/null +++ b/demos/workspaces/demo-register-user.md @@ -0,0 +1,69 @@ +## User Story: Credential Management + +This notebook will outline how you can create user credentials, delete them and get them if you forget them. + +User credentials refer to a set of s3 credentials used for interacting with your internal EODC workspaces (and ones shared with you). + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.2.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + +### Creating + +Send a post request to the /workspaces/user endpoint in order to create your credentials, the response will include your new credentials, these will be tied to your account. + + +```python +import requests + +response = requests.post( + url=f"https://openeo.eodc.eu/openeo/1.1.0/user", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content.decode() +``` + +### Removing + +Send a delete request to the /workspaces/user endpoint in order to create your credentials, this will invalidate your current set of credentials, you can simply post again in order to receive a new set of credentials in the future. + + +```python +import requests + +response = requests.delete( + url=f"https://openeo.eodc.eu/openeo/1.1.0/user", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content.decode() +``` + +### Getting + +If you forgot your credentials you can simply call get on the same /workspaces/user endpoint and the response will include your current credentials. + + +```python +import requests + +response = requests.get( + url=f"https://openeo.eodc.eu/openeo/1.1.0/user", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content.decode() +``` diff --git a/demos/workspaces/demo-register-workspace.ipynb b/demos/workspaces/demo-register-workspace.ipynb index 2994998..4cfaf9d 100644 --- a/demos/workspaces/demo-register-workspace.ipynb +++ b/demos/workspaces/demo-register-workspace.ipynb @@ -23,7 +23,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -51,6 +51,7 @@ "S3_SECRET_KEY = \"\"\n", "\n", "ext_ws = {\n", + " \"title\": WORKSPACE_NAME,\n", " \"intent\": \"register\",\n", " \"storage_type\": \"ceph\",\n", " \"credentials\": {\n", @@ -75,6 +76,7 @@ "AZURE_CONNECTION_STRING = \"\"\n", "\n", "ext_ws = {\n", + " \"title\": WORKSPACE_NAME,\n", " \"intent\": \"register\",\n", " \"storage_type\": \"azure\",\n", " \"credentials\": {\n", @@ -99,7 +101,7 @@ "import requests\n", "\n", "response = requests.post(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/register\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspaces\",\n", " json=ext_ws,\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", diff --git a/demos/workspaces/demo-register-workspace.md b/demos/workspaces/demo-register-workspace.md new file mode 100644 index 0000000..93ca1f9 --- /dev/null +++ b/demos/workspaces/demo-register-workspace.md @@ -0,0 +1,79 @@ +## User Story: Registering a Workspace + +John is a PhD student with user collection data stored in a container on Azure blob storage service. + +Instead of creating a internal EODC workspace, you can register your own workspace and use it in much the same way. + +All you need to do is post to the "/workspaces" endpoint with a and submit your credentials. + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + +You can fill out the following variables so they fit with the workspace that you are trying to register. + +IMPORTANT NOTE: Make sure the workspace name corresponds to your underlying bucket/container + + +```python +# If your workspace is a s3 compatible object storage fill out these variables + +WORKSPACE_NAME = "" + +S3_ENDPOINT = "" +S3_ACCESS_KEY = "" +S3_SECRET_KEY = "" + +ext_ws = { + "intent": "register", + "storage_type": "ceph", + "credentials": { + "url": S3_ENDPOINT, + "access_key": S3_ACCESS_KEY, + "secret_key": S3_SECRET_KEY, + }, + +} +``` + + +```python +# If your workspace is azure blob storage, fill out the connection string + +WORKSPACE_NAME = "" + +AZURE_CONNECTION_STRING = "" + +ext_ws = { + "intent": "register", + "storage_type": "azure", + "credentials": { + "connection_string": AZURE_CONNECTION_STRING, + }, +} +``` + +After filling out these request bodies, you can send a request to the given endpoint and your workspace will be registered in our backend. + + +```python +import requests + +response = requests.post( + url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/register", + json=ext_ws, + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content +``` + +If the response is positive, we have successfully registered our workspace under our user and can now use it as we would any other workspace, by passing the workspace name in our process graphs. diff --git a/demos/workspaces/demo-save-results.ipynb b/demos/workspaces/demo-save-results.ipynb index 5f33d62..cf63191 100644 --- a/demos/workspaces/demo-save-results.ipynb +++ b/demos/workspaces/demo-save-results.ipynb @@ -15,29 +15,11 @@ "source": [ "In order to save results from openEO jobs to workspaces, make sure that either your external workspace is registered with the openEO backend (see External Workspace Registration Notebook) or you have provisioned a local workspace.\n", "\n", - "Then all you need to do, is add the export_to_workspace process after your save_result process in the process graph\n", + "Then all you need to do, is add the export_workspace process after your save_result process in the process graph\n", "\n", "arguments: {\"workspace\": WORKSPACE_NAME}" ] }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [ - "import openeo\n", - "\n", - "# Set This variable to your workspace's name.\n", - "\n", - "WORKSPACE_NAME = \"\"\n", - "\n", - "# Connect to the openEO backend and authenticate with EGI Check-In\n", - "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", - "connection = connection.authenticate_oidc(provider_id=\"egi\")" - ] - }, { "cell_type": "markdown", "metadata": {}, @@ -57,11 +39,11 @@ "\n", "# Set This variable to your workspace's name.\n", "\n", - "WORKSPACE_NAME = \"\"\n", + "WORKSPACE_NAME = \"demo\"\n", "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -71,6 +53,8 @@ "metadata": {}, "outputs": [], "source": [ + "from openeo.rest.datacube import THIS\n", + "\n", "collection = connection.load_collection(\n", " collection_id=\"boa_sentinel_2\",\n", " spatial_extent={\n", @@ -84,8 +68,8 @@ ")\n", "\n", "result = collection.save_result().process(\n", - " \"export_workspace\", arguments={\"workspace\": WORKSPACE_NAME}\n", - ")" + " \"export_workspace\", arguments={\"workspace\": WORKSPACE_NAME, \"merge\": None}, data=THIS\n", + ")\n" ] }, { @@ -146,7 +130,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.0rc1" + "version": "3.10.12" } }, "nbformat": 4, diff --git a/demos/workspaces/demo-save-results.md b/demos/workspaces/demo-save-results.md new file mode 100644 index 0000000..ea907c9 --- /dev/null +++ b/demos/workspaces/demo-save-results.md @@ -0,0 +1,78 @@ +## User Story: Save openEO result to Workspace + +Mia is a data scientist, she wants to have access to the user workspace solution to store user results produced with the openEO Platform service offering. + +In order to save results from openEO jobs to workspaces, make sure that either your external workspace is registered with the openEO backend (see External Workspace Registration Notebook) or you have provisioned a local workspace. + +Then all you need to do, is add the export_to_workspace process after your save_result process in the process graph + +arguments: {"workspace": WORKSPACE_NAME} + + +```python +import openeo + +# Set This variable to your workspace's name. + +WORKSPACE_NAME = "" + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + +## Using the openeo python library + +To export data to a workspace using the openeo library, you can simply + + +```python +import openeo + +# Set This variable to your workspace's name. + +WORKSPACE_NAME = "" + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + + +```python +collection = connection.load_collection( + collection_id="boa_sentinel_2", + spatial_extent={ + "west": 16.156771491786476, + "east": 16.59018048465475, + "south": 48.08419286799747, + "north": 48.34670064966687, + }, + temporal_extent=["2019-01-01T00:00:00Z", "2019-01-31T00:00:00Z"], + bands=["B02"], +) + +result = collection.save_result().process( + "export_workspace", arguments={"workspace": WORKSPACE_NAME} +) +``` + +Run this to start the job. + + +```python +job = result.create_job() + +job.start() +``` + +Run this to check the status of your job. + + +```python +job +``` + +After the job has run through you can check the exported files in your workspace! diff --git a/demos/workspaces/demo-share-workspace.ipynb b/demos/workspaces/demo-share-workspace.ipynb index 5b24dea..b70f40c 100644 --- a/demos/workspaces/demo-share-workspace.ipynb +++ b/demos/workspaces/demo-share-workspace.ipynb @@ -29,7 +29,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -45,7 +45,7 @@ "SHAREE_USER_ID = \"\"\n", "\n", "response = requests.post(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -75,7 +75,7 @@ "SHAREE_USER_ID = \"\"\n", "\n", "response = requests.delete(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", diff --git a/demos/workspaces/demo-share-workspace.md b/demos/workspaces/demo-share-workspace.md new file mode 100644 index 0000000..05831a6 --- /dev/null +++ b/demos/workspaces/demo-share-workspace.md @@ -0,0 +1,58 @@ +## User Story: Workspace Sharing + + +John creates a user collection by running an openEO process graph. He wants to share this user collection with Nina. Nina wants to visualise John's user collection in a Jupyter Notebook and runs a process graph that uses this as an input collection. + +Sharing your workspace is extremely simple, all you have to do is send a post request to the /workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID} endpoint with the corresponding workspace name and the user-id of the person you want to share your workspace with (Note: this only works for local EODC workspaces). + +This call will allow read access for whoever you share the workspace with, which also means the other person can send load_collection requests using this workspace, but they cannot save results to it. + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + + +```python +import requests + +WORKSPACE_NAME = "" +SHAREE_USER_ID = "" + +response = requests.post( + url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content +``` + +If we get a successful response, we have now shared the workspace and the other person will now have read access and can load your user collections for their own process graphs. + +If you want to stop sharing your workspace, you can simply send a delete request to the same endpoint. + + +```python +import requests + +WORKSPACE_NAME = "" +SHAREE_USER_ID = "" + +response = requests.delete( + url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}", + headers={ + "authorization": f"Bearer {connection.auth.bearer}" + }, +) + +response.content +``` + +A successful response here means the other user will no longer have any access to your workspace. diff --git a/demos/workspaces/demo-show-files.ipynb b/demos/workspaces/demo-show-files.ipynb index fcb7765..facb50c 100644 --- a/demos/workspaces/demo-show-files.ipynb +++ b/demos/workspaces/demo-show-files.ipynb @@ -50,7 +50,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -63,7 +63,7 @@ "import requests\n", "\n", "response = requests.get(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/files\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspaces/{WORKSPACE_NAME}/files\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -104,7 +104,7 @@ "outputs": [], "source": [ "response = requests.get(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspaces/user\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspaces/user\",\n", " headers={\n", " \"authorization\": f\"Bearer {connection.auth.bearer}\"\n", " },\n", @@ -186,7 +186,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.0" + "version": "3.10.12" } }, "nbformat": 4, diff --git a/demos/workspaces/demo-show-files.md b/demos/workspaces/demo-show-files.md new file mode 100644 index 0000000..e2b57d2 --- /dev/null +++ b/demos/workspaces/demo-show-files.md @@ -0,0 +1,54 @@ +## User Story: List Files + +As an openEO Platform user, Mia wants to list all files in her user workspace. + + +There is a variety of ways to list your workspace files. + +- Through the openEO API +- Using the WorkspaceAdapter +- With a 3rd-Party object-storage file explorer + +#### 1) openEO API + +Disclaimer: We enable this feature soley for internal EODC Workspaces as we want to limit read-operations, especially those exposed through a public API (even despite authentication), on external workspaces. + +There is only single step involved, assuming you already have a workspace with some data in it, you can simply make a request to the /workspace/{WORKSPACE_NAME}/files endpoint and get a list of files returned. + + +```python +import openeo + +# Set This variable to your workspace's name. + +WORKSPACE_NAME = "" + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.example.eu/openeo/1.2.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + + +```python +import requests + +response = requests.get( + url="https://openeo.example.eu/openeo/1.2.0/workspaces/WORKSPACE_NAME/files", + headers={ + "authorization": "Bearer BEARER_TOKEN" + }, +) + +print(response.content.decode()) +``` + +## 2) Third Party Applications + +This method is less relevant to this tutorial, but you can always use a third-party object-storage browser to view your files or interact with your workspace in general. + +Some tools: + +- S3 Browser (for S3 systems like Ceph, you can use this for internal EODC Workspace) +- Microsoft Azure Storage Explorer (for Azure Blob Storage) +- ... diff --git a/demos/workspaces/demo-stac-modify.ipynb b/demos/workspaces/demo-stac-modify.ipynb index c782f89..28335d4 100644 --- a/demos/workspaces/demo-stac-modify.ipynb +++ b/demos/workspaces/demo-stac-modify.ipynb @@ -23,7 +23,7 @@ "\n", "# Connect to the openEO backend and authenticate with EGI Check-In\n", "\n", - "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.1.0\")\n", + "connection = openeo.connect(\"https://openeo.eodc.eu/openeo/1.2.0\")\n", "connection = connection.authenticate_oidc(provider_id=\"egi\")" ] }, @@ -50,7 +50,7 @@ "source": [ "CHANGES = {\"id\": \"newid\"}\n", "\n", - "WORKSPACE_NAME = \"test2\"" + "WORKSPACE_NAME = \"\"" ] }, { @@ -176,7 +176,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.11.0rc1" + "version": "3.10.12" } }, "nbformat": 4, diff --git a/demos/workspaces/demo-stac-modify.md b/demos/workspaces/demo-stac-modify.md new file mode 100644 index 0000000..75ceaad --- /dev/null +++ b/demos/workspaces/demo-stac-modify.md @@ -0,0 +1,101 @@ +## STAC Modify Process + +The stac_modify process allows you to modify the created stac resources of the save_result processes. So you can edit any properties of the stac objects. + +The modification of the resource functions according to the [RFC 7386: JSON Merge Patch](https://www.rfc-editor.org/rfc/rfc7386.html) specification. + +in this demo we will be changing the ID of the STAC collection as an example. + + +```python +import openeo + +# Connect to the openEO backend and authenticate with EGI Check-In + +connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") +connection = connection.authenticate_oidc(provider_id="egi") +``` + +## Changes + +In order to change the collection id of the saved stac resource, we have to call the stac_modify process after save_result. + +The stac_modify process has 2 arguments: "data", which takes in the stac resource that gets returned by save_result and "changes", which takes in the changes we want to apply to the stac resource as a dictionary. + +The changes are then applied according to the [RFC 7386: JSON Merge Patch](https://www.rfc-editor.org/rfc/rfc7386.html) specification. + +In our case we will have to pass the following argument as "changes", with "newid" being the new id we assign for this collection. + + +```python +CHANGES = {"id": "newid"} + +WORKSPACE_NAME = "test2" +``` + + +```python +from openeo.rest.datacube import THIS + +cube = connection.load_collection(collection_id="boa_sentinel_2", spatial_extent={ + "west": 16.156771491786476, + "east": 16.59018048465475, + "south": 48.08419286799747, + "north": 48.34670064966687 + }, temporal_extent=[ + "2019-01-01T00:00:00Z", + "2019-01-31T00:00:00Z" + ], + bands=[ + "B02" + ]) + +result = cube.save_result()\ + .process("stac_modify", arguments={"changes" : CHANGES}, data=THIS)\ + .process("export_workspace", arguments={"workspace": WORKSPACE_NAME, "merge": None}, data=THIS) + +``` + +Optionally you can print the process graph here. + + +```python +result.print_json() +``` + +Run this to start the job + + +```python +job = result.create_job() + +job.start() +``` + +Run this to check on your jobs status. + + +```python +job +``` + +## Check new ID + +Now you can check the STAC collection from your workspace using the workspace adapter to see the new ID. + + +```python +from eodc.workspace import CephAdapter, EODC_CEPH_URL + +# Set these variables to your own. + +S3_ENDPOINT = EODC_CEPH_URL +S3_ACCESS_KEY = "" +S3_SECRET_KEY = "" + +adapter: CephAdapter = CephAdapter(S3_ENDPOINT, S3_ACCESS_KEY, S3_SECRET_KEY) + +collections = adapter.list_stac_collections(WORKSPACE_NAME) + +collections +``` diff --git a/demos/workspaces/demo-workspace-providers.ipynb b/demos/workspaces/demo-workspace-providers.ipynb index d2effd9..a5aa795 100644 --- a/demos/workspaces/demo-workspace-providers.ipynb +++ b/demos/workspaces/demo-workspace-providers.ipynb @@ -22,7 +22,7 @@ "import requests\n", "\n", "response = requests.get(\n", - " url=f\"https://openeo.eodc.eu/openeo/1.1.0/workspace_providers\",\n", + " url=f\"https://openeo.eodc.eu/openeo/1.2.0/workspace_providers\",\n", ")\n", "\n", "\n", diff --git a/demos/workspaces/demo-workspace-providers.md b/demos/workspaces/demo-workspace-providers.md new file mode 100644 index 0000000..7d6554f --- /dev/null +++ b/demos/workspaces/demo-workspace-providers.md @@ -0,0 +1,20 @@ +## Workspace Providers + +Workspace Providers are the name of the different underlying object-storage types that are supported by any given backend. + +To access a list of supported workspace providers, just call the /workspace_providers endpoint. The information in this +list also contains the formatting of parameters used when registering a workspace of the given type. + + + +```python +import json +import requests + +response = requests.get( + url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace_providers", +) + + +print(json.dumps(json.loads(response.content.decode()), indent=4, sort_keys=True)) +``` diff --git a/poetry.lock b/poetry.lock index 34c2562..f454f56 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,3 +1,5 @@ +# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. + [[package]] name = "affine" version = "2.4.0" @@ -5,6 +7,10 @@ description = "Matrices describing affine transformation of the plane" category = "main" optional = false python-versions = ">=3.7" +files = [ + {file = "affine-2.4.0-py3-none-any.whl", hash = "sha256:8a3df80e2b2378aef598a83c1392efd47967afec4242021a0b06b4c7cbc61a92"}, + {file = "affine-2.4.0.tar.gz", hash = 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+openeo = "0.35.0" +[tool.poetry.group.dev.dependencies] +ipykernel = "^6.29.5" + [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" From 7def54e37df614bb95e4feed430ca27cff8c424f Mon Sep 17 00:00:00 2001 From: Gerald Walter Irsiegler Date: Tue, 17 Dec 2024 14:11:28 +0100 Subject: [PATCH 2/2] Delete: generated .md files --- demos/workspaces/demo-create-workspace.md | 52 --------- demos/workspaces/demo-load-data.md | 109 ------------------- demos/workspaces/demo-register-user.md | 69 ------------ demos/workspaces/demo-register-workspace.md | 79 -------------- demos/workspaces/demo-save-results.md | 78 ------------- demos/workspaces/demo-share-workspace.md | 58 ---------- demos/workspaces/demo-show-files.md | 54 --------- demos/workspaces/demo-stac-modify.md | 101 ----------------- demos/workspaces/demo-workspace-providers.md | 20 ---- 9 files changed, 620 deletions(-) delete mode 100644 demos/workspaces/demo-create-workspace.md delete mode 100644 demos/workspaces/demo-load-data.md delete mode 100644 demos/workspaces/demo-register-user.md delete mode 100644 demos/workspaces/demo-register-workspace.md delete mode 100644 demos/workspaces/demo-save-results.md delete mode 100644 demos/workspaces/demo-share-workspace.md delete mode 100644 demos/workspaces/demo-show-files.md delete mode 100644 demos/workspaces/demo-stac-modify.md delete mode 100644 demos/workspaces/demo-workspace-providers.md diff --git a/demos/workspaces/demo-create-workspace.md b/demos/workspaces/demo-create-workspace.md deleted file mode 100644 index b2a8f0c..0000000 --- a/demos/workspaces/demo-create-workspace.md +++ /dev/null @@ -1,52 +0,0 @@ -## User Story: Create EODC Workspace - -John wants to create a user workspace at EODC, as he does not have a object-storage solution himself. - -It's a very simple task to provision a workspace at EODC, provided that you are already an openEO user. - -All you need to do in order to create a workspace from scratch is post to the /workspaces endpoint -in the openEO API with a body consisting of a create intent and the preferred title of your workspace. - -like so: - -{ - 'intent':'create', - 'title':'Example' -} - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - - -```python -import requests - -WORKSPACE_NAME = "" - -request_body = { - "intent": "create", - "title": WORKSPACE_NAME -} - -response = requests.post( - url=f"https://openeo.eodc.eu/openeo/1.1.0/workspaces", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, - json=request_body -) -``` - -The responses content will contain your s3 credentials which you can then use to interact with your newly created workspace. - - -```python -response.content -``` diff --git a/demos/workspaces/demo-load-data.md b/demos/workspaces/demo-load-data.md deleted file mode 100644 index bd0b494..0000000 --- a/demos/workspaces/demo-load-data.md +++ /dev/null @@ -1,109 +0,0 @@ -## User Story: Load Data - -Loading your user-collections is a simple process, in order to ensure this notebook works, make sure to already have results of a job saved -in your workspace so we can load it here. -If you don't you can check out the save result demo notebook first. - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - -In order to load a user collection, we have to first find out the collection id, we can do this by listing the stac collections within the workspace using -the list_stac_collections(WORKSPACE_NAME) function. This function returns us a list of tuples consisting of the collection_id and the path to the stac collection json. - - -```python -from eodc.workspace import CephAdapter, EODC_CEPH_URL - -# Set these variables to your own. - -WORKSPACE_NAME = "" - -S3_ENDPOINT = EODC_CEPH_URL -S3_ACCESS_KEY = "" -S3_SECRET_KEY = "" - -adapter: CephAdapter = CephAdapter(S3_ENDPOINT, S3_ACCESS_KEY, S3_SECRET_KEY) - -collections = adapter.list_stac_collections(WORKSPACE_NAME) - -collections -``` - -Now you can set your url manually or get it via the list_stac_collections return value. - - -```python -# URL = "" - -collection_id = collections[0][0] - -collection = collections[0][-1] - -URL = collection.links[1].absolute_href - -URL -``` - -You can also check the available STAC items of your given collection beforehand by using the get_stac_items function of the workspace adapter. - - -```python -items = adapter.get_stac_items(workspace_name=WORKSPACE_NAME, collection_id=collection_id) - -items -``` - -We are also defaulting to the same spatial_extent and the same temporal_extent as in the save result notebook, feel free to change these to fit your use case. - -If you want to check the full extent of your user collection you can use the following code: - - -```python -print(adapter.get_collection(WORKSPACE_NAME, collection_id).extent.spatial.bboxes) # This prints the maximum bounding box around all items in the STAC collection -print(adapter.get_collection(WORKSPACE_NAME, collection_id).extent.temporal.intervals) # This prints the maximum temporal extent of all items in the STAC collection -``` - -Now we can start a job with the corresponding url in the load_stac node. - -This will load results from a previous job which we can then further transform and use as we like. - - -```python -collection = connection.load_stac( - url=URL, - spatial_extent={ - "west": 16.156771491786476, - "east": 16.59018048465475, - "south": 48.08419286799747, - "north": 48.34670064966687, - }, - temporal_extent=["2019-01-01T00:00:00Z", "2019-01-31T00:00:00Z"] -) - -result = collection.save_result(format="netCDF") -``` - -Run this to start the job. - - -```python -job = result.create_job() - -job.start() -``` - -Run this to check the status of your job. - - -```python -job # Execute this to check on your jobs progress -``` - -Once the job has run through you can check the results! diff --git a/demos/workspaces/demo-register-user.md b/demos/workspaces/demo-register-user.md deleted file mode 100644 index 1c35612..0000000 --- a/demos/workspaces/demo-register-user.md +++ /dev/null @@ -1,69 +0,0 @@ -## User Story: Credential Management - -This notebook will outline how you can create user credentials, delete them and get them if you forget them. - -User credentials refer to a set of s3 credentials used for interacting with your internal EODC workspaces (and ones shared with you). - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.2.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - -### Creating - -Send a post request to the /workspaces/user endpoint in order to create your credentials, the response will include your new credentials, these will be tied to your account. - - -```python -import requests - -response = requests.post( - url=f"https://openeo.eodc.eu/openeo/1.1.0/user", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content.decode() -``` - -### Removing - -Send a delete request to the /workspaces/user endpoint in order to create your credentials, this will invalidate your current set of credentials, you can simply post again in order to receive a new set of credentials in the future. - - -```python -import requests - -response = requests.delete( - url=f"https://openeo.eodc.eu/openeo/1.1.0/user", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content.decode() -``` - -### Getting - -If you forgot your credentials you can simply call get on the same /workspaces/user endpoint and the response will include your current credentials. - - -```python -import requests - -response = requests.get( - url=f"https://openeo.eodc.eu/openeo/1.1.0/user", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content.decode() -``` diff --git a/demos/workspaces/demo-register-workspace.md b/demos/workspaces/demo-register-workspace.md deleted file mode 100644 index 93ca1f9..0000000 --- a/demos/workspaces/demo-register-workspace.md +++ /dev/null @@ -1,79 +0,0 @@ -## User Story: Registering a Workspace - -John is a PhD student with user collection data stored in a container on Azure blob storage service. - -Instead of creating a internal EODC workspace, you can register your own workspace and use it in much the same way. - -All you need to do is post to the "/workspaces" endpoint with a and submit your credentials. - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - -You can fill out the following variables so they fit with the workspace that you are trying to register. - -IMPORTANT NOTE: Make sure the workspace name corresponds to your underlying bucket/container - - -```python -# If your workspace is a s3 compatible object storage fill out these variables - -WORKSPACE_NAME = "" - -S3_ENDPOINT = "" -S3_ACCESS_KEY = "" -S3_SECRET_KEY = "" - -ext_ws = { - "intent": "register", - "storage_type": "ceph", - "credentials": { - "url": S3_ENDPOINT, - "access_key": S3_ACCESS_KEY, - "secret_key": S3_SECRET_KEY, - }, - -} -``` - - -```python -# If your workspace is azure blob storage, fill out the connection string - -WORKSPACE_NAME = "" - -AZURE_CONNECTION_STRING = "" - -ext_ws = { - "intent": "register", - "storage_type": "azure", - "credentials": { - "connection_string": AZURE_CONNECTION_STRING, - }, -} -``` - -After filling out these request bodies, you can send a request to the given endpoint and your workspace will be registered in our backend. - - -```python -import requests - -response = requests.post( - url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/register", - json=ext_ws, - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content -``` - -If the response is positive, we have successfully registered our workspace under our user and can now use it as we would any other workspace, by passing the workspace name in our process graphs. diff --git a/demos/workspaces/demo-save-results.md b/demos/workspaces/demo-save-results.md deleted file mode 100644 index ea907c9..0000000 --- a/demos/workspaces/demo-save-results.md +++ /dev/null @@ -1,78 +0,0 @@ -## User Story: Save openEO result to Workspace - -Mia is a data scientist, she wants to have access to the user workspace solution to store user results produced with the openEO Platform service offering. - -In order to save results from openEO jobs to workspaces, make sure that either your external workspace is registered with the openEO backend (see External Workspace Registration Notebook) or you have provisioned a local workspace. - -Then all you need to do, is add the export_to_workspace process after your save_result process in the process graph - -arguments: {"workspace": WORKSPACE_NAME} - - -```python -import openeo - -# Set This variable to your workspace's name. - -WORKSPACE_NAME = "" - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - -## Using the openeo python library - -To export data to a workspace using the openeo library, you can simply - - -```python -import openeo - -# Set This variable to your workspace's name. - -WORKSPACE_NAME = "" - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - - -```python -collection = connection.load_collection( - collection_id="boa_sentinel_2", - spatial_extent={ - "west": 16.156771491786476, - "east": 16.59018048465475, - "south": 48.08419286799747, - "north": 48.34670064966687, - }, - temporal_extent=["2019-01-01T00:00:00Z", "2019-01-31T00:00:00Z"], - bands=["B02"], -) - -result = collection.save_result().process( - "export_workspace", arguments={"workspace": WORKSPACE_NAME} -) -``` - -Run this to start the job. - - -```python -job = result.create_job() - -job.start() -``` - -Run this to check the status of your job. - - -```python -job -``` - -After the job has run through you can check the exported files in your workspace! diff --git a/demos/workspaces/demo-share-workspace.md b/demos/workspaces/demo-share-workspace.md deleted file mode 100644 index 05831a6..0000000 --- a/demos/workspaces/demo-share-workspace.md +++ /dev/null @@ -1,58 +0,0 @@ -## User Story: Workspace Sharing - - -John creates a user collection by running an openEO process graph. He wants to share this user collection with Nina. Nina wants to visualise John's user collection in a Jupyter Notebook and runs a process graph that uses this as an input collection. - -Sharing your workspace is extremely simple, all you have to do is send a post request to the /workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID} endpoint with the corresponding workspace name and the user-id of the person you want to share your workspace with (Note: this only works for local EODC workspaces). - -This call will allow read access for whoever you share the workspace with, which also means the other person can send load_collection requests using this workspace, but they cannot save results to it. - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - - -```python -import requests - -WORKSPACE_NAME = "" -SHAREE_USER_ID = "" - -response = requests.post( - url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content -``` - -If we get a successful response, we have now shared the workspace and the other person will now have read access and can load your user collections for their own process graphs. - -If you want to stop sharing your workspace, you can simply send a delete request to the same endpoint. - - -```python -import requests - -WORKSPACE_NAME = "" -SHAREE_USER_ID = "" - -response = requests.delete( - url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace/{WORKSPACE_NAME}/share/{SHAREE_USER_ID}", - headers={ - "authorization": f"Bearer {connection.auth.bearer}" - }, -) - -response.content -``` - -A successful response here means the other user will no longer have any access to your workspace. diff --git a/demos/workspaces/demo-show-files.md b/demos/workspaces/demo-show-files.md deleted file mode 100644 index e2b57d2..0000000 --- a/demos/workspaces/demo-show-files.md +++ /dev/null @@ -1,54 +0,0 @@ -## User Story: List Files - -As an openEO Platform user, Mia wants to list all files in her user workspace. - - -There is a variety of ways to list your workspace files. - -- Through the openEO API -- Using the WorkspaceAdapter -- With a 3rd-Party object-storage file explorer - -#### 1) openEO API - -Disclaimer: We enable this feature soley for internal EODC Workspaces as we want to limit read-operations, especially those exposed through a public API (even despite authentication), on external workspaces. - -There is only single step involved, assuming you already have a workspace with some data in it, you can simply make a request to the /workspace/{WORKSPACE_NAME}/files endpoint and get a list of files returned. - - -```python -import openeo - -# Set This variable to your workspace's name. - -WORKSPACE_NAME = "" - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.example.eu/openeo/1.2.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - - -```python -import requests - -response = requests.get( - url="https://openeo.example.eu/openeo/1.2.0/workspaces/WORKSPACE_NAME/files", - headers={ - "authorization": "Bearer BEARER_TOKEN" - }, -) - -print(response.content.decode()) -``` - -## 2) Third Party Applications - -This method is less relevant to this tutorial, but you can always use a third-party object-storage browser to view your files or interact with your workspace in general. - -Some tools: - -- S3 Browser (for S3 systems like Ceph, you can use this for internal EODC Workspace) -- Microsoft Azure Storage Explorer (for Azure Blob Storage) -- ... diff --git a/demos/workspaces/demo-stac-modify.md b/demos/workspaces/demo-stac-modify.md deleted file mode 100644 index 75ceaad..0000000 --- a/demos/workspaces/demo-stac-modify.md +++ /dev/null @@ -1,101 +0,0 @@ -## STAC Modify Process - -The stac_modify process allows you to modify the created stac resources of the save_result processes. So you can edit any properties of the stac objects. - -The modification of the resource functions according to the [RFC 7386: JSON Merge Patch](https://www.rfc-editor.org/rfc/rfc7386.html) specification. - -in this demo we will be changing the ID of the STAC collection as an example. - - -```python -import openeo - -# Connect to the openEO backend and authenticate with EGI Check-In - -connection = openeo.connect("https://openeo.eodc.eu/openeo/1.1.0") -connection = connection.authenticate_oidc(provider_id="egi") -``` - -## Changes - -In order to change the collection id of the saved stac resource, we have to call the stac_modify process after save_result. - -The stac_modify process has 2 arguments: "data", which takes in the stac resource that gets returned by save_result and "changes", which takes in the changes we want to apply to the stac resource as a dictionary. - -The changes are then applied according to the [RFC 7386: JSON Merge Patch](https://www.rfc-editor.org/rfc/rfc7386.html) specification. - -In our case we will have to pass the following argument as "changes", with "newid" being the new id we assign for this collection. - - -```python -CHANGES = {"id": "newid"} - -WORKSPACE_NAME = "test2" -``` - - -```python -from openeo.rest.datacube import THIS - -cube = connection.load_collection(collection_id="boa_sentinel_2", spatial_extent={ - "west": 16.156771491786476, - "east": 16.59018048465475, - "south": 48.08419286799747, - "north": 48.34670064966687 - }, temporal_extent=[ - "2019-01-01T00:00:00Z", - "2019-01-31T00:00:00Z" - ], - bands=[ - "B02" - ]) - -result = cube.save_result()\ - .process("stac_modify", arguments={"changes" : CHANGES}, data=THIS)\ - .process("export_workspace", arguments={"workspace": WORKSPACE_NAME, "merge": None}, data=THIS) - -``` - -Optionally you can print the process graph here. - - -```python -result.print_json() -``` - -Run this to start the job - - -```python -job = result.create_job() - -job.start() -``` - -Run this to check on your jobs status. - - -```python -job -``` - -## Check new ID - -Now you can check the STAC collection from your workspace using the workspace adapter to see the new ID. - - -```python -from eodc.workspace import CephAdapter, EODC_CEPH_URL - -# Set these variables to your own. - -S3_ENDPOINT = EODC_CEPH_URL -S3_ACCESS_KEY = "" -S3_SECRET_KEY = "" - -adapter: CephAdapter = CephAdapter(S3_ENDPOINT, S3_ACCESS_KEY, S3_SECRET_KEY) - -collections = adapter.list_stac_collections(WORKSPACE_NAME) - -collections -``` diff --git a/demos/workspaces/demo-workspace-providers.md b/demos/workspaces/demo-workspace-providers.md deleted file mode 100644 index 7d6554f..0000000 --- a/demos/workspaces/demo-workspace-providers.md +++ /dev/null @@ -1,20 +0,0 @@ -## Workspace Providers - -Workspace Providers are the name of the different underlying object-storage types that are supported by any given backend. - -To access a list of supported workspace providers, just call the /workspace_providers endpoint. The information in this -list also contains the formatting of parameters used when registering a workspace of the given type. - - - -```python -import json -import requests - -response = requests.get( - url=f"https://openeo.eodc.eu/openeo/1.1.0/workspace_providers", -) - - -print(json.dumps(json.loads(response.content.decode()), indent=4, sort_keys=True)) -```