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v0.3.10
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@epi2melabs-bot epi2melabs-bot released this 24 Jan 14:02
· 151 commits to master since this release
v0.3.10
b9df5e3

Changes

  • --samples now changed to --sample and --sample_sheet introduced
  • Schema updated to allow integration with epi2me services
  • Added ARTIC V4.1 primer set
  • Added NEB VarSkip primer sets
  • Updated Nextclade data to 2022-01-05T19:54:31Z
  • Updated Nextclade to v1.8.0
  • Updated pangolin to v3.1.17
  • Now outputs all sample VCFs as well as merged VCF
  • Pangolin and Nextclade versions can be specified at runtime --pangolin_version and --nextclade_version
  • Pangolin and Nextclade data can be updated at runtime with --update_data
  • All Nextclade data versions included in repo for user selection with --nextclade_data_tag, most recent will be used by default
  • Updated max-length of amplicons for NEB long
  • Updated NEB-v1a-long bed file to pool=1 from pool=0
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