Split prior infections and growth calculation into separate function #1745
Workflow file for this run
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| name: "Synthetic validation check" | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| workflow_dispatch: | |
| jobs: | |
| synthetic-valiation: | |
| runs-on: macos-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@master | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: NA | |
| install-pandoc: false | |
| extra-packages: | | |
| here | |
| scoringutils | |
| loo | |
| matrixStats | |
| local::. | |
| - name: Run synthetic validation | |
| run: | | |
| source("inst/dev/recover-synthetic/rt.R") | |
| shell: Rscript {0} | |
| - name: Upload validation figures | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: figures | |
| retention-days: 5 | |
| path: inst/dev/figs | |
| - name: Upload validation fits | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: fits | |
| retention-days: 5 | |
| path: synthetic.rds |