diff --git a/R/opts.R b/R/opts.R index ece334f2a..0892ce71a 100644 --- a/R/opts.R +++ b/R/opts.R @@ -404,19 +404,18 @@ backcalc_opts <- function(prior = c("reports", "none", "infections"), #' process. Custom settings can be supplied which override the defaults. #' #' @param ls_mean Numeric, defaults to 21 days. The mean of the lognormal -#' length scale. Not used for linear kernel. +#' length scale. #' #' @param ls_sd Numeric, defaults to 7 days. The standard deviation of the log #' normal length scale. If \code{ls_sd = 0}, inverse-gamma prior on Gaussian #' process length scale will be used with recommended parameters -#' \code{inv_gamma(1.499007, 0.057277 * ls_max)}. Not used for linear kernel. +#' \code{inv_gamma(1.499007, 0.057277 * ls_max)}. #' #' @param ls_min Numeric, defaults to 0. The minimum value of the length scale. -#' Not used for linear kernel. #' #' @param ls_max Numeric, defaults to 60. The maximum value of the length #' scale. Updated in [create_gp_data()] to be the length of the input data if -#' this is smaller. Not used for linear kernel. +#' this is smaller. #' #' @param alpha_mean Numeric, defaults to 0. The mean of the magnitude parameter #' of the Gaussian process kernel. Should be approximately the expected variance