+## *{{ packagename }}*: An R package with tools for estimating vaccine effectiveness and vaccine related metrics
[](https://opensource.org/license/mit/)
-[](https://github.com/epiverse-trace/vaccineff/actions/workflows/R-CMD-check.yaml)
+[](https://github.com/%7B%7B%20gh_repo%20%7D%7D/actions/workflows/R-CMD-check.yaml)
[](https://app.codecov.io/gh/epiverse-trace/vaccineff?branch=main)
+coverage](https://codecov.io/gh/%7B%7B%20gh_repo%20%7D%7D/branch/main/graph/badge.svg)](https://app.codecov.io/gh/%7B%7B%20gh_repo%20%7D%7D?branch=main)
[](https://www.repostatus.org/#wip)
[](https://CRAN.R-project.org/package=vaccineff)
+status](https://www.r-pkg.org/badges/version/%7B%7B%20packagename%20%7D%7D)](https://CRAN.R-project.org/package=%7B%7B%20packagename%20%7D%7D)
[](https://www.reconverse.org/lifecycle.html#concept)
-*vaccineff* is developed at [Pontificia Universidad
+*{{ packagename }}* is developed at [Pontificia Universidad
Javeriana](https://www.javeriana.edu.co/inicio) as part of the
[Epiverse-TRACE initiative](https://data.org/initiatives/epiverse/).
-*vaccineff* is an R package that offers tools for estimating vaccine
-effectiveness, using a series of epidemiological designs including
-cohort studies, test-negative case-control, and screening methods
-([Torvaldsen and McIntyre 2020](#ref-torvaldsen2002)). The current
-version of the package provides a set of features for preparing,
+*{{ packagename }}* is an R package that offers tools for estimating
+vaccine effectiveness, using a series of epidemiological designs
+including cohort studies, test-negative case-control, and screening
+methods ([Torvaldsen and McIntyre 2002](#ref-torvaldsen2002)). The
+current version of the package provides a set of features for preparing,
visualizing, and managing cohort data, estimating vaccine effectiveness,
and assessing the performance of the models. Test-negative design and
screening method will be included in future versions.
## Installation
-The current development version of *vaccineff* can be installed from
-[GitHub](https://github.com/) using the `pak` package.
+The current development version of *{{ packagename }}* can be installed
+from [GitHub](https://github.com/) using the `pak` package.
``` r
if(!require("pak")) install.packages("pak")
-pak::pak("epiverse-trace/vaccineff")
+pak::pak("{{ gh_repo }}")
```
## Quick start
-*vaccineff* provides a minimal cohort dataset that can be used to test
-out the models.
+*{{ packagename }}* provides a minimal cohort dataset that can be used
+to test out the models.
``` r
# Load example `cohortdata` included in the package
@@ -65,21 +65,21 @@ head(cohortdata, 5)
## Package vignettes
-More details on how to use *vaccineff* can be found in the [online
-documentation as package
-vignettes](https://epiverse-trace.github.io/vaccineff/), in the article
-“Get Started with vaccineff”.
+More details on how to use *{{ packagename }}* can be found in the
+[online documentation as package
+vignettes](https://epiverse-trace.github.io/%7B%7B%20packagename%20%7D%7D/),
+in the article “Get Started with vaccineff”.
## Help
To report a bug or to request a new feature please open an
-[issue](https://github.com/epiverse-trace/vaccineff/issues/new/choose).
+[issue](https://github.com/%7B%7B%20gh_repo%20%7D%7D/issues/new/choose).
## Contribute
-Contributions to *vaccineff* are welcomed. Please follow the [package
-contributing
-guide](https://github.com/epiverse-trace/vaccineff/blob/main/.github/CONTRIBUTING.md).
+Contributions to *{{ packagename }}* are welcomed. Please follow the
+[package contributing
+guide](https://github.com/%7B%7B%20gh_repo%20%7D%7D/blob/main/.github/CONTRIBUTING.md).
Contributors to the project include:
@@ -98,19 +98,18 @@ Abril-Bermúdez](https://github.com/fsabrilb)
## Code of conduct
-Please note that the *vaccineff* project is released with a [Contributor
-Code of
+Please note that the *{{ packagename }}* project is released with a
+[Contributor Code of
Conduct](https://github.com/epiverse-trace/.github/blob/main/CODE_OF_CONDUCT.md).
By contributing to this project, you agree to abide by its terms.
## References
-