From 3c59974f6ab1093e4627dddf7976741db0fed7ae Mon Sep 17 00:00:00 2001 From: Hans Kallekleiv <16436291+HansKallekleiv@users.noreply.github.com> Date: Fri, 24 Nov 2023 11:23:01 +0100 Subject: [PATCH] Bump sumo (#482) --- backend/poetry.lock | 386 +++++------------- backend/pyproject.toml | 4 +- .../dev_sumo_access_test_driver.py | 120 ------ .../src/services/sumo_access/grid_access.py | 4 +- .../src/services/sumo_access/queries/case.py | 32 +- .../services/sumo_access/queries/cpgrid.py | 98 +++-- 6 files changed, 186 insertions(+), 458 deletions(-) delete mode 100644 backend/src/services/sumo_access/dev_sumo_access_test_driver.py diff --git a/backend/poetry.lock b/backend/poetry.lock index 289dcd49b..ef49b9a4e 100644 --- a/backend/poetry.lock +++ b/backend/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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{file = "sumo_wrapper_python-1.0.6-py3-none-any.whl", hash = "sha256:67f43914defa6d200a2df76ce4ef2a4f089195edc7643a9290a17ca541662f24"}, ] [package.dependencies] +azure-identity = ">=1.13.0" httpx = ">=0.24.1" -msal = ">=1.18.0" +msal = ">=1.20.0" msal-extensions = ">=1.0.0" pyjwt = ">=2.4.0" -PyYAML = ">=5.4" -setuptools = ">=49.2.1" +PyYAML = ">=6.0.1" +setuptools = ">=68.0.0" +tenacity = ">=8.2.2" [package.extras] docs = ["sphinx", "sphinx-rtd-theme"] @@ -2759,6 +2575,20 @@ py-cpuinfo = "*" [package.extras] doc = ["ipython", "numpydoc", "sphinx (>=1.1)", "sphinx-rtd-theme"] +[[package]] +name = "tenacity" +version = "8.2.3" +description = "Retry code until it succeeds" +optional = false +python-versions = ">=3.7" +files = [ + {file = "tenacity-8.2.3-py3-none-any.whl", hash = "sha256:ce510e327a630c9e1beaf17d42e6ffacc88185044ad85cf74c0a8887c6a0f88c"}, + {file = "tenacity-8.2.3.tar.gz", hash = "sha256:5398ef0d78e63f40007c1fb4c0bff96e1911394d2fa8d194f77619c05ff6cc8a"}, +] + +[package.extras] +doc = ["reno", "sphinx", "tornado (>=4.5)"] + [[package]] name = "tomlkit" version = "0.11.8" @@ -3047,4 +2877,4 @@ tests = ["hypothesis", "pytest", "pytest-benchmark", "pytest-mock", "pytest-snap [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "3a5231dade6fe172008bdfab1842eaa86f7b3d71249b06af756fa979948033ee" +content-hash = "d3d967728bb8652a4ef0e2ac4f4427b160b1bccaa2fda5e56ec8415ae96a1e86" diff --git a/backend/pyproject.toml b/backend/pyproject.toml index 0690fc6c2..dd7561a72 100644 --- a/backend/pyproject.toml +++ b/backend/pyproject.toml @@ -23,8 +23,8 @@ pandas = {version = "2.0.1", extras = ["performance"]} httpx = "^0.24.0" psutil = "^5.9.5" vtk = "^9.2.6" -fmu-sumo = "^0.5.4" -sumo-wrapper-python = "^0.4.1" +fmu-sumo = "1.0.3" +sumo-wrapper-python = "1.0.6" [tool.poetry.group.dev.dependencies] diff --git a/backend/src/services/sumo_access/dev_sumo_access_test_driver.py b/backend/src/services/sumo_access/dev_sumo_access_test_driver.py deleted file mode 100644 index 2e7533f40..000000000 --- a/backend/src/services/sumo_access/dev_sumo_access_test_driver.py +++ /dev/null @@ -1,120 +0,0 @@ -import sys -from typing import List -import logging -import asyncio - -import pyarrow as pa - -from fmu.sumo.explorer.explorer import SumoClient - -from src.services.summary_vector_statistics import ( - compute_vector_statistics_table, - compute_vector_statistics, -) -from .summary_access import SummaryAccess, RealizationVector, Frequency - -from .sumo_explore import SumoExplore - - -async def test_summary_access(summary_access: SummaryAccess) -> None: - vector_names = await summary_access.get_available_vectors() - print("\n\n") - print(vector_names) - - vector_table, _vector_meta = await summary_access.get_vector_table( - vector_name="FOPT", resampling_frequency=None, realizations=None - ) - print("\n\nRAW") - print(vector_table.shape) - - vector_table, _vector_meta = await summary_access.get_vector_table( - vector_name="FOPT", resampling_frequency=Frequency.DAILY, realizations=None - ) - print("\n\nDAILY") - print(vector_table.shape) - - vector_table, _vector_meta = await summary_access.get_vector_table( - vector_name="FOPT", resampling_frequency=Frequency.YEARLY, realizations=None - ) - print("\n\nYEARLY") - print(vector_table) - print(vector_table.shape) - - print("\n\nYEARLY - only real 0") - vector_table, _vector_meta = await summary_access.get_vector_table( - vector_name="FOPT", resampling_frequency=Frequency.YEARLY, realizations=[0] - ) - vector_table = vector_table.filter(pa.compute.equal(vector_table["REAL"], 0)) - print(vector_table) - print(vector_table.shape) - - vector_arr: List[RealizationVector] = await summary_access.get_vector( - "FOPT", resampling_frequency=Frequency.YEARLY, realizations=None - ) - print("\n\n") - print(f"{len(vector_arr)=}") - print(vector_arr[0]) - - print("\n\nYEARLY") - vector_table, _vector_meta = await summary_access.get_vector_table( - vector_name="FOPT", resampling_frequency=Frequency.YEARLY, realizations=None - ) - print(vector_table) - - print("\n\nSTATS table") - stat_table = compute_vector_statistics_table(vector_table, "FOPT", None) - if not stat_table: - raise RuntimeError("No STATS table") - print(stat_table) - print(stat_table.schema) - - print("\n\nSTATS") - vec_stats = compute_vector_statistics(vector_table, "FOPT", None) - print(vec_stats) - - -async def main() -> None: - print("## Running dev_sumo_access_test_driver") - print("## =================================================") - - logging.basicConfig( - level=logging.WARNING, - format="%(asctime)s %(levelname)-3s [%(name)s]: %(message)s", - ) - # logging.getLogger("").setLevel(level=logging.DEBUG) - logging.getLogger("src.services.sumo_access").setLevel(level=logging.DEBUG) - - # dummy_sumo_client = SumoClient("prod") - dummy_sumo_client = SumoClient("dev") - access_token = dummy_sumo_client._retrieve_token() # pylint: disable=protected-access - - explore = SumoExplore(access_token=access_token) - cases = await explore.get_cases(field_identifier="DROGON") - print(cases) - - # sumo_case_id = "0db5f2dd-aa62-407f-9ac4-0dbbe30371a2" - sumo_case_id = "10f41041-2c17-4374-a735-bb0de62e29dc" - sumo_case_name = None - for case_info in cases: - if case_info.uuid == sumo_case_id: - sumo_case_name = case_info.name - - if not sumo_case_name: - print("The sumo case id was not found") - sys.exit(1) - - iterations = explore.get_iterations(sumo_case_id) - print("\n\n") - print(iterations) - - # iteration_name = iterations[0].name - - # summary_access = SummaryAccess(access_token=access_token, case_uuid=sumo_case_id, iteration_name=iteration_name) - # test_summary_access(summary_access) - - -# Running: -# python -m asyncio src.services.sumo_access.dev_sumo_access_test_driver -# ------------------------------------------------------------------------- -if __name__ == "__main__": - asyncio.run(main()) diff --git a/backend/src/services/sumo_access/grid_access.py b/backend/src/services/sumo_access/grid_access.py index 3585122b2..a59b9229e 100644 --- a/backend/src/services/sumo_access/grid_access.py +++ b/backend/src/services/sumo_access/grid_access.py @@ -40,7 +40,7 @@ async def get_grid_geometry(self, grid_name: str, realization: int) -> xtgeo.Gri ) stream = self._sumo_client.get(f"/objects('{geometry_blob_id}')/blob") print(f"{grid_name} {realization} {geometry_blob_id} in {round(timer.lap_s(),2)}s") - grid_geom = xtgeo.grid_from_file(BytesIO(stream)) + grid_geom = xtgeo.grid_from_file(BytesIO(stream.content)) return grid_geom @@ -58,7 +58,7 @@ async def get_grid_parameter( ) stream = self._sumo_client.get(f"/objects('{parameter_blob_id}')/blob") print(f"{grid_name} {grid_parameter_name} {realization} {parameter_blob_id} in {round(timer.lap_s(),2)}s") - grid_param = xtgeo.gridproperty_from_file(BytesIO(stream)) + grid_param = xtgeo.gridproperty_from_file(BytesIO(stream.content)) return grid_param async def grids_have_equal_nxnynz(self, grid_name: str) -> bool: diff --git a/backend/src/services/sumo_access/queries/case.py b/backend/src/services/sumo_access/queries/case.py index 6c5ee1455..7f1895451 100644 --- a/backend/src/services/sumo_access/queries/case.py +++ b/backend/src/services/sumo_access/queries/case.py @@ -5,26 +5,26 @@ async def get_stratigraphic_column_identifier(sumo_client: SumoClient, case_id: str) -> str: """Get stratigraphic column identifier for a case (assuming unique for all objects)""" - response = await sumo_client.get_async( - "/search", - query=f"_sumo.parent_object:{case_id}", - size=1, - select="masterdata.smda.stratigraphic_column.identifier", - ) - - hits = response["hits"]["hits"] + params = { + "query": f"_sumo.parent_object:{case_id}", + "size": 1, + "select": "masterdata.smda.stratigraphic_column.identifier", + } + response = await sumo_client.get_async("/search", params) + result = response.json() + hits = result["hits"]["hits"] return hits[0]["_source"]["masterdata"]["smda"]["stratigraphic_column"]["identifier"] async def get_field_identifiers(sumo_client: SumoClient, case_id: str) -> List[str]: """Get field identifiers for a case (assuming unique for all objects)""" - response = await sumo_client.get_async( - "/search", - query=f"_sumo.parent_object:{case_id}", - size=1, - select="masterdata.smda.field.identifier", - ) - - hits = response["hits"]["hits"] + params = { + "query": f"_sumo.parent_object:{case_id}", + "size": 1, + "select": "masterdata.smda.field.identifier", + } + response = await sumo_client.get_async("/search", params) + result = response.json() + hits = result["hits"]["hits"] fields = hits[0]["_source"]["masterdata"]["smda"]["field"] return [field["identifier"] for field in fields] diff --git a/backend/src/services/sumo_access/queries/cpgrid.py b/backend/src/services/sumo_access/queries/cpgrid.py index d6786cf3d..cf8602d3b 100644 --- a/backend/src/services/sumo_access/queries/cpgrid.py +++ b/backend/src/services/sumo_access/queries/cpgrid.py @@ -5,7 +5,7 @@ async def get_grid_names(sumo_client: SumoClient, case_id: str, iteration: str) -> List[str]: """Get a list of grid names for a case and iteration""" - query = { + payload = { "size": 0, "query": { "bool": { @@ -25,7 +25,7 @@ async def get_grid_names(sumo_client: SumoClient, case_id: str, iteration: str) } }, } - response = await sumo_client.post_async("/search", json=query) + response = await sumo_client.post_async("/search", json=payload) result = response.json() grid_names = result.get("aggregations").get("grid_names").get("buckets") @@ -38,7 +38,7 @@ async def get_grid_geometry_checksums( sumo_client: SumoClient, case_id: str, iteration: str, grid_name: str ) -> List[str]: """Get a list of checksums for a grid geometry in a case and iteration""" - query = { + payload = { "size": 0, "query": { "bool": { @@ -59,7 +59,7 @@ async def get_grid_geometry_checksums( } }, } - response = sumo_client.post_async("/search", json=query) + response = sumo_client.post_async("/search", json=payload) result = response.json() checksums = result.get("aggregations").get("checksums").get("buckets") @@ -75,18 +75,25 @@ async def get_grid_geometry_blob_id( grid_name: str, ) -> str: """Get the blob id for a given grid geometry in a case, iteration and realization""" - response = await sumo_client.get_async( - "/search", - query=f"_sumo.parent_object:{case_id} AND \ - class.keyword:cpgrid AND \ - fmu.iteration.name:{iteration} AND \ - fmu.realization.id:{realization} AND \ - data.name.keyword:{grid_name}", - size=1000, - select="_id", - ) - - hits = response["hits"]["hits"] + payload = { + "query": { + "bool": { + "must": [ + {"match": {"_sumo.parent_object.keyword": case_id}}, + {"match": {"class": "cpgrid"}}, + {"match": {"fmu.iteration.name": iteration}}, + {"match": {"fmu.realization.id": realization}}, + {"match": {"data.name.keyword": grid_name}}, + ] + } + }, + "size": 1, + } + response = await sumo_client.post_async("/search", json=payload) + + result = response.json() + hits = result["hits"]["hits"] + print(hits) if len(hits) != 1: raise ValueError(f"Expected 1 hit, got {len(hits)}") return [hit["_id"] for hit in hits][0] @@ -101,19 +108,25 @@ async def get_grid_parameter_blob_id( parameter_name: str, ) -> str: """Get the blob id for a given grid parameter in a case, iteration and realization""" "" - response = await sumo_client.get_async( - "/search", - query=f"_sumo.parent_object:{case_id} AND \ - class.keyword:cpgrid_property AND \ - fmu.iteration.name:{iteration} AND \ - fmu.realization.id:{realization} AND \ - data.name.keyword:{parameter_name} AND \ - data.tagname.keyword:{grid_name}", - size=1000, - select="_id", - ) - - hits = response["hits"]["hits"] + payload = { + "query": { + "bool": { + "must": [ + {"match": {"_sumo.parent_object.keyword": case_id}}, + {"match": {"class": "cpgrid_property"}}, + {"match": {"fmu.iteration.name": iteration}}, + {"match": {"fmu.realization.id": realization}}, + {"match": {"data.name.keyword": parameter_name}}, + {"match": {"data.tagname.keyword": grid_name}}, + ] + } + }, + "size": 1, + } + response = await sumo_client.post_async("/search", json=payload) + + result = response.json() + hits = result["hits"]["hits"] if len(hits) != 1: raise ValueError(f"Expected 1 hit, got {len(hits)}") @@ -158,18 +171,23 @@ async def get_nx_ny_nz_for_ensemble_grids( sumo_client: SumoClient, case_uuid: str, iteration: str, grid_name: str ) -> List[List[int]]: """Get a list of nxnynz for all realizations of a grid model in a case and iteration""" + payload = { + "query": { + "bool": { + "must": [ + {"match": {"_sumo.parent_object.keyword": case_uuid}}, + {"match": {"class": "cpgrid"}}, + {"match": {"fmu.iteration.name": iteration}}, + {"match": {"data.name.keyword": grid_name}}, + ] + } + }, + "size": 1000, + } - response = await sumo_client.get_async( - "/search", - query=f"_sumo.parent_object:{case_uuid} AND \ - class.keyword:cpgrid AND \ - fmu.iteration.name:{iteration} AND \ - data.name.keyword:{grid_name}", - size=1000, - select="data", - ) - - hits = response["hits"]["hits"] + response = await sumo_client.post_async("/search", json=payload) + result = response.json() + hits = result["hits"]["hits"] nxnynz = [] for hit in hits: