diff --git a/ERF_8H_source.html b/ERF_8H_source.html index 3dc48fa87a..622692e8cd 100644 --- a/ERF_8H_source.html +++ b/ERF_8H_source.html @@ -1527,7 +1527,7 @@
ERF_WindFarm.H
ERF_WriteBndryPlanes.H
ERF
Definition: ERF.H:122
-
ERF::MakeHorizontalAverages
void MakeHorizontalAverages()
Definition: ERF.cpp:1739
+
ERF::MakeHorizontalAverages
void MakeHorizontalAverages()
Definition: ERF.cpp:1741
ERF::rU_new
amrex::Vector< amrex::MultiFab > rU_new
Definition: ERF.H:750
ERF::last_check_file_step
int last_check_file_step
Definition: ERF.H:893
ERF::initRayleigh
void initRayleigh()
Initialize Rayleigh damping profiles.
Definition: ERF_InitRayleigh.cpp:14
@@ -1585,7 +1585,7 @@
ERF::d_havg_qv
amrex::Gpu::DeviceVector< amrex::Real > d_havg_qv
Definition: ERF.H:1134
ERF::column_loc_y
static amrex::Real column_loc_y
Definition: ERF.H:1073
ERF::mg_verbose
static int mg_verbose
Definition: ERF.H:1019
-
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:1393
+
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:1395
ERF::PlotFileVarNames
static amrex::Vector< std::string > PlotFileVarNames(amrex::Vector< std::string > plot_var_names)
Definition: ERF_Plotfile.cpp:173
ERF::InitializeFromFile
void InitializeFromFile()
ERF::physbcs_cons
amrex::Vector< std::unique_ptr< ERFPhysBCFunct_cons > > physbcs_cons
Definition: ERF.H:737
@@ -1637,7 +1637,7 @@
ERF::Qv_prim
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Qv_prim
Definition: ERF.H:745
ERF::sum_interval
static int sum_interval
Definition: ERF.H:1023
ERF::pert_interval
static int pert_interval
Definition: ERF.H:1024
-
ERF::restart
void restart()
Definition: ERF.cpp:1250
+
ERF::restart
void restart()
Definition: ERF.cpp:1252
ERF::Tau13_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau13_lev
Definition: ERF.H:802
ERF::SFS_q1fx2_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_q1fx2_lev
Definition: ERF.H:814
ERF::ReadCheckpointFileMOST
void ReadCheckpointFileMOST()
Definition: ERF_Checkpoint.cpp:627
@@ -1703,7 +1703,7 @@
ERF::nc_bdy_file
static std::string nc_bdy_file
Definition: ERF.H:1045
ERF::metgrid_interp_theta
bool metgrid_interp_theta
Definition: ERF.H:1059
ERF::nc_init_file
static amrex::Vector< amrex::Vector< std::string > > nc_init_file
Definition: ERF.H:1042
-
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:1281
+
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:1283
ERF::input_bndry_planes
static int input_bndry_planes
Definition: ERF.H:1083
ERF::interpolation_type
static StateInterpType interpolation_type
Definition: ERF.H:1032
ERF::d_havg_qc
amrex::Gpu::DeviceVector< amrex::Real > d_havg_qc
Definition: ERF.H:1135
@@ -1744,7 +1744,7 @@
ERF::column_loc_x
static amrex::Real column_loc_x
Definition: ERF.H:1072
ERF::ax
amrex::Vector< std::unique_ptr< amrex::MultiFab > > ax
Definition: ERF.H:823
ERF::z_phys_nd
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd
Definition: ERF.H:819
-
ERF::MakeDiagnosticAverage
void MakeDiagnosticAverage(amrex::Vector< amrex::Real > &h_havg, amrex::MultiFab &S, int n)
Definition: ERF.cpp:1845
+
ERF::MakeDiagnosticAverage
void MakeDiagnosticAverage(amrex::Vector< amrex::Real > &h_havg, amrex::MultiFab &S, int n)
Definition: ERF.cpp:1847
ERF::metgrid_proximity
amrex::Real metgrid_proximity
Definition: ERF.H:1064
ERF::h_havg_temperature
amrex::Vector< amrex::Real > h_havg_temperature
Definition: ERF.H:1126
ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:1353
@@ -1792,7 +1792,7 @@
ERF::ax_src
amrex::Vector< std::unique_ptr< amrex::MultiFab > > ax_src
Definition: ERF.H:829
ERF::input_sponge
void input_sponge(int lev)
Definition: ERF_InitSponge.cpp:17
ERF::d_u_geos
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_u_geos
Definition: ERF.H:1099
-
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1917
+
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1919
ERF::NumDataLogs
AMREX_FORCE_INLINE int NumDataLogs() noexcept
Definition: ERF.H:1221
ERF::turbPert
TurbulentPerturbation turbPert
Definition: ERF.H:986
ERF::rW_old
amrex::Vector< amrex::MultiFab > rW_old
Definition: ERF.H:753
@@ -1824,7 +1824,7 @@
ERF::advance_microphysics
void advance_microphysics(int lev, amrex::MultiFab &cons_in, const amrex::Real &dt_advance, const int &iteration, const amrex::Real &time)
Definition: ERF_AdvanceMicrophysics.cpp:5
ERF::Lwave
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Lwave
Definition: ERF.H:853
ERF::project_velocities
void project_velocities(int lev, amrex::Real dt, amrex::Vector< amrex::MultiFab > &vars, amrex::MultiFab &p)
Definition: ERF_PoissonSolve.cpp:10
-
ERF::ParameterSanityChecks
void ParameterSanityChecks()
Definition: ERF.cpp:1673
+
ERF::ParameterSanityChecks
void ParameterSanityChecks()
Definition: ERF.cpp:1675
ERF::derive_stress_profiles
void derive_stress_profiles(amrex::Gpu::HostVector< amrex::Real > &h_avg_tau11, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau12, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau13, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau22, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau23, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau33, amrex::Gpu::HostVector< amrex::Real > &h_avg_hfx3, amrex::Gpu::HostVector< amrex::Real > &h_avg_q1fx3, amrex::Gpu::HostVector< amrex::Real > &h_avg_q2fx3, amrex::Gpu::HostVector< amrex::Real > &h_avg_diss)
Definition: ERF_Write1DProfiles.cpp:480
ERF::Tau12_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau12_lev
Definition: ERF.H:801
ERF::cf_width
int cf_width
Definition: ERF.H:792
@@ -1832,7 +1832,7 @@
ERF::zflux_imask
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > zflux_imask
Definition: ERF.H:882
ERF::m_expand_plotvars_to_unif_rr
bool m_expand_plotvars_to_unif_rr
Definition: ERF.H:924
ERF::plot_file_on_restart
int plot_file_on_restart
Definition: ERF.H:894
-
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1891
+
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1893
ERF::post_update
void post_update(amrex::MultiFab &state_mf, amrex::Real time, const amrex::Geometry &geom)
ERF::num_boxes_at_level
amrex::Vector< int > num_boxes_at_level
Definition: ERF.H:709
ERF::print_error
static void print_error(MPI_Comm, const std::string &msg)
Definition: ERF_ConsoleIO.cpp:43
@@ -1872,7 +1872,7 @@
ERF::metgrid_order
int metgrid_order
Definition: ERF.H:1065
ERF::finished_wave
bool finished_wave
Definition: ERF.H:856
ERF::ReadCheckpointFile
void ReadCheckpointFile()
Definition: ERF_Checkpoint.cpp:273
-
ERF::writeNow
bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)
Definition: ERF.cpp:1968
+
ERF::writeNow
bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)
Definition: ERF.cpp:1970
ERF::vars_old
amrex::Vector< amrex::Vector< amrex::MultiFab > > vars_old
Definition: ERF.H:726
ERF::build_fine_mask
amrex::MultiFab & build_fine_mask(int lev)
Definition: ERF_WriteScalarProfiles.cpp:429
ERF::physbcs_base
amrex::Vector< std::unique_ptr< ERFPhysBCFunct_base > > physbcs_base
Definition: ERF.H:741
@@ -1885,7 +1885,7 @@
ERF::Tau22_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau22_lev
Definition: ERF.H:800
ERF::turbPert_amplitude
void turbPert_amplitude(const int lev)
Definition: ERF_InitTurbPert.cpp:41
ERF::sample_lines
void sample_lines(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &mf)
Definition: ERF_WriteScalarProfiles.cpp:287
-
ERF::initializeMicrophysics
void initializeMicrophysics(const int &)
Definition: ERF.cpp:1214
+
ERF::initializeMicrophysics
void initializeMicrophysics(const int &)
Definition: ERF.cpp:1216
ERF::plot_lsm
bool plot_lsm
Definition: ERF.H:931
ERF::cons_names
const amrex::Vector< std::string > cons_names
Definition: ERF.H:946
ERF::FillPatch
void FillPatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mfs_vel, bool cons_only=false)
diff --git a/ERF__ABLMost_8H_source.html b/ERF__ABLMost_8H_source.html index 5f9566776f..f911de936b 100644 --- a/ERF__ABLMost_8H_source.html +++ b/ERF__ABLMost_8H_source.html @@ -453,173 +453,177 @@
365 
366  /* wrapper around compute_pblh */
367  void
-
368  update_pblh (const int& lev,
+
368  update_pblh (const int& lev,
369  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars,
370  amrex::MultiFab* z_phys_cc,
-
371  const int RhoQv_comp, const int RhoQr_comp);
-
372 
-
373  template <typename PBLHeightEstimator>
-
374  void
-
375  compute_pblh (const int& lev,
-
376  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars,
-
377  amrex::MultiFab* z_phys_cc,
-
378  const PBLHeightEstimator& est,
-
379  const int RhoQv_comp, const int RhoQr_comp);
-
380 
-
381  void
-
382  read_custom_roughness (const int& lev,
-
383  const std::string& fname);
+
371  const int RhoQv_comp,
+
372  const int RhoQc_comp,
+
373  const int RhoQr_comp);
+
374 
+
375  template <typename PBLHeightEstimator>
+
376  void
+
377  compute_pblh (const int& lev,
+
378  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars,
+
379  amrex::MultiFab* z_phys_cc,
+
380  const PBLHeightEstimator& est,
+
381  const int RhoQv_comp,
+
382  const int RhoQc_comp,
+
383  const int RhoQr_comp);
384 
385  void
-
386  update_surf_temp (const amrex::Real& time)
-
387  {
-
388  if (surf_heating_rate != 0) {
-
389  int nlevs = m_geom.size();
-
390  for (int lev = 0; lev < nlevs; lev++)
-
391  {
-
392  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
-
393  amrex::Print() << "Surface temp at t=" << time
-
394  << ": "
-
395  << surf_temp + surf_heating_rate*time
-
396  << std::endl;
-
397  }
-
398  }
-
399  }
-
400 
-
401  void
-
402  update_mac_ptrs (const int& lev,
-
403  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
-
404  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim,
-
405  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qv_prim,
-
406  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qr_prim)
-
407  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim,Qr_prim); }
-
408 
-
409  const amrex::MultiFab*
-
410  get_u_star (const int& lev) { return u_star[lev].get(); }
-
411 
-
412  const amrex::MultiFab*
-
413  get_w_star (const int& lev) { return w_star[lev].get(); }
-
414 
-
415  const amrex::MultiFab*
-
416  get_t_star (const int& lev) { return t_star[lev].get(); }
-
417 
-
418  const amrex::MultiFab*
-
419  get_q_star (const int& lev) { return q_star[lev].get(); }
-
420 
-
421  const amrex::MultiFab*
-
422  get_olen (const int& lev) { return olen[lev].get(); }
-
423 
-
424  const amrex::MultiFab*
-
425  get_pblh (const int& lev) { return pblh[lev].get(); }
-
426 
-
427  const amrex::MultiFab*
-
428  get_mac_avg (const int& lev, int comp) { return m_ma.get_average(lev,comp); }
-
429 
-
430  const amrex::MultiFab*
-
431  get_t_surf (const int& lev) { return t_surf[lev].get(); }
-
432 
-
433  amrex::Real
-
434  get_zref () { return m_ma.get_zref(); }
-
435 
-
436  const amrex::FArrayBox*
-
437  get_z0 (const int& lev) { return &z_0[lev]; }
-
438 
-
439  bool have_variable_sea_roughness() { return m_var_z0; }
-
440 
-
441  const amrex::iMultiFab*
-
442  get_lmask(const int& lev) { return m_lmask_lev[lev][0]; }
-
443 
-
444  int
-
445  lmask_min_reduce (amrex::iMultiFab& lmask, const int& nghost)
-
446  {
-
447  int lmask_min = amrex::ReduceMin(lmask, nghost,
-
448  [=] AMREX_GPU_HOST_DEVICE (amrex::Box const& bx, amrex::Array4<int const> const& lm_arr) -> int
-
449  {
-
450  int locmin = std::numeric_limits<int>::max();
-
451  const auto lo = lbound(bx);
-
452  const auto hi = ubound(bx);
-
453  for (int j = lo.y; j <= hi.y; ++j) {
-
454  for (int i = lo.x; i <= hi.x; ++i) {
-
455  locmin = std::min(locmin, lm_arr(i,j,0));
-
456  }
-
457  }
-
458  return locmin;
-
459  });
-
460 
-
461  return lmask_min;
-
462  }
-
463 
-
464  enum struct FluxCalcType {
-
465  MOENG = 0, ///< Moeng functional form
-
466  DONELAN, ///< Donelan functional form
-
467  CUSTOM, ///< Custom constant flux functional form
-
468  ROTATE ///< Terrain rotation flux functional form
-
469  };
-
470 
-
471  enum struct ThetaCalcType {
-
472  ADIABATIC = 0,
-
473  HEAT_FLUX, ///< Heat-flux specified
-
474  SURFACE_TEMPERATURE ///< Surface temperature specified
-
475  };
-
476 
-
477  enum struct RoughCalcType {
-
478  CONSTANT = 0, ///< Constant z0
-
479  CHARNOCK,
-
480  MODIFIED_CHARNOCK,
-
481  DONELAN,
-
482  WAVE_COUPLED
-
483  };
-
484 
-
485  enum struct PBLHeightCalcType {
-
486  None, MYNN25, YSU
+
386  read_custom_roughness (const int& lev,
+
387  const std::string& fname);
+
388 
+
389  void
+
390  update_surf_temp (const amrex::Real& time)
+
391  {
+
392  if (surf_heating_rate != 0) {
+
393  int nlevs = m_geom.size();
+
394  for (int lev = 0; lev < nlevs; lev++)
+
395  {
+
396  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
+
397  amrex::Print() << "Surface temp at t=" << time
+
398  << ": "
+
399  << surf_temp + surf_heating_rate*time
+
400  << std::endl;
+
401  }
+
402  }
+
403  }
+
404 
+
405  void
+
406  update_mac_ptrs (const int& lev,
+
407  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
+
408  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim,
+
409  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qv_prim,
+
410  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Qr_prim)
+
411  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim,Qr_prim); }
+
412 
+
413  const amrex::MultiFab*
+
414  get_u_star (const int& lev) { return u_star[lev].get(); }
+
415 
+
416  const amrex::MultiFab*
+
417  get_w_star (const int& lev) { return w_star[lev].get(); }
+
418 
+
419  const amrex::MultiFab*
+
420  get_t_star (const int& lev) { return t_star[lev].get(); }
+
421 
+
422  const amrex::MultiFab*
+
423  get_q_star (const int& lev) { return q_star[lev].get(); }
+
424 
+
425  const amrex::MultiFab*
+
426  get_olen (const int& lev) { return olen[lev].get(); }
+
427 
+
428  const amrex::MultiFab*
+
429  get_pblh (const int& lev) { return pblh[lev].get(); }
+
430 
+
431  const amrex::MultiFab*
+
432  get_mac_avg (const int& lev, int comp) { return m_ma.get_average(lev,comp); }
+
433 
+
434  const amrex::MultiFab*
+
435  get_t_surf (const int& lev) { return t_surf[lev].get(); }
+
436 
+
437  amrex::Real
+
438  get_zref () { return m_ma.get_zref(); }
+
439 
+
440  const amrex::FArrayBox*
+
441  get_z0 (const int& lev) { return &z_0[lev]; }
+
442 
+
443  bool have_variable_sea_roughness() { return m_var_z0; }
+
444 
+
445  const amrex::iMultiFab*
+
446  get_lmask(const int& lev) { return m_lmask_lev[lev][0]; }
+
447 
+
448  int
+
449  lmask_min_reduce (amrex::iMultiFab& lmask, const int& nghost)
+
450  {
+
451  int lmask_min = amrex::ReduceMin(lmask, nghost,
+
452  [=] AMREX_GPU_HOST_DEVICE (amrex::Box const& bx, amrex::Array4<int const> const& lm_arr) -> int
+
453  {
+
454  int locmin = std::numeric_limits<int>::max();
+
455  const auto lo = lbound(bx);
+
456  const auto hi = ubound(bx);
+
457  for (int j = lo.y; j <= hi.y; ++j) {
+
458  for (int i = lo.x; i <= hi.x; ++i) {
+
459  locmin = std::min(locmin, lm_arr(i,j,0));
+
460  }
+
461  }
+
462  return locmin;
+
463  });
+
464 
+
465  return lmask_min;
+
466  }
+
467 
+
468  enum struct FluxCalcType {
+
469  MOENG = 0, ///< Moeng functional form
+
470  DONELAN, ///< Donelan functional form
+
471  CUSTOM, ///< Custom constant flux functional form
+
472  ROTATE ///< Terrain rotation flux functional form
+
473  };
+
474 
+
475  enum struct ThetaCalcType {
+
476  ADIABATIC = 0,
+
477  HEAT_FLUX, ///< Heat-flux specified
+
478  SURFACE_TEMPERATURE ///< Surface temperature specified
+
479  };
+
480 
+
481  enum struct RoughCalcType {
+
482  CONSTANT = 0, ///< Constant z0
+
483  CHARNOCK,
+
484  MODIFIED_CHARNOCK,
+
485  DONELAN,
+
486  WAVE_COUPLED
487  };
488 
-
489  FluxCalcType flux_type{FluxCalcType::MOENG};
-
490  ThetaCalcType theta_type{ThetaCalcType::ADIABATIC};
-
491  RoughCalcType rough_type_land{RoughCalcType::CONSTANT};
-
492  RoughCalcType rough_type_sea{RoughCalcType::CHARNOCK};
-
493  PBLHeightCalcType pblh_type{PBLHeightCalcType::None};
-
494 
-
495 private:
-
496  bool use_moisture;
-
497  bool m_exp_most = false;
-
498  bool m_rotate = false;
-
499  bool m_include_wstar = false;
-
500  amrex::Real z0_const{0.1};
-
501  amrex::Real surf_temp;
-
502  amrex::Real surf_heating_rate{0};
-
503  amrex::Real surf_temp_flux{0};
-
504  amrex::Real custom_ustar{0};
-
505  amrex::Real custom_tstar{0};
-
506  amrex::Real custom_qstar{0};
-
507  amrex::Real cnk_a{0.0185};
-
508  bool cnk_visc{false};
-
509  amrex::Real depth{30.0};
-
510  amrex::Real m_start_bdy_time;
-
511  amrex::Real m_bdy_time_interval;
-
512  amrex::Vector<amrex::Geometry> m_geom;
-
513  amrex::Vector<amrex::FArrayBox> z_0;
-
514  bool m_var_z0{false};
-
515 
-
516  MOSTAverage m_ma;
-
517  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
-
518  amrex::Vector<std::unique_ptr<amrex::MultiFab>> w_star;
-
519  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
-
520  amrex::Vector<std::unique_ptr<amrex::MultiFab>> q_star;
-
521  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
-
522  amrex::Vector<std::unique_ptr<amrex::MultiFab>> pblh;
-
523  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
-
524 
-
525  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_sst_lev;
-
526  amrex::Vector<amrex::Vector<amrex::iMultiFab*>> m_lmask_lev;
-
527  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_data_lev;
-
528  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_flux_lev;
-
529  amrex::Vector<amrex::MultiFab*> m_Hwave_lev;
-
530  amrex::Vector<amrex::MultiFab*> m_Lwave_lev;
-
531  amrex::Vector<amrex::MultiFab*> m_eddyDiffs_lev;
-
532 };
-
533 
-
534 #endif /* ABLMOST_H */
+
489  enum struct PBLHeightCalcType {
+
490  None, MYNN25, YSU
+
491  };
+
492 
+
493  FluxCalcType flux_type{FluxCalcType::MOENG};
+
494  ThetaCalcType theta_type{ThetaCalcType::ADIABATIC};
+
495  RoughCalcType rough_type_land{RoughCalcType::CONSTANT};
+
496  RoughCalcType rough_type_sea{RoughCalcType::CHARNOCK};
+
497  PBLHeightCalcType pblh_type{PBLHeightCalcType::None};
+
498 
+
499 private:
+
500  bool use_moisture;
+
501  bool m_exp_most = false;
+
502  bool m_rotate = false;
+
503  bool m_include_wstar = false;
+
504  amrex::Real z0_const{0.1};
+
505  amrex::Real surf_temp;
+
506  amrex::Real surf_heating_rate{0};
+
507  amrex::Real surf_temp_flux{0};
+
508  amrex::Real custom_ustar{0};
+
509  amrex::Real custom_tstar{0};
+
510  amrex::Real custom_qstar{0};
+
511  amrex::Real cnk_a{0.0185};
+
512  bool cnk_visc{false};
+
513  amrex::Real depth{30.0};
+
514  amrex::Real m_start_bdy_time;
+
515  amrex::Real m_bdy_time_interval;
+
516  amrex::Vector<amrex::Geometry> m_geom;
+
517  amrex::Vector<amrex::FArrayBox> z_0;
+
518  bool m_var_z0{false};
+
519 
+
520  MOSTAverage m_ma;
+
521  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
+
522  amrex::Vector<std::unique_ptr<amrex::MultiFab>> w_star;
+
523  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
+
524  amrex::Vector<std::unique_ptr<amrex::MultiFab>> q_star;
+
525  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
+
526  amrex::Vector<std::unique_ptr<amrex::MultiFab>> pblh;
+
527  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
+
528 
+
529  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_sst_lev;
+
530  amrex::Vector<amrex::Vector<amrex::iMultiFab*>> m_lmask_lev;
+
531  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_data_lev;
+
532  amrex::Vector<amrex::Vector<amrex::MultiFab*>> m_lsm_flux_lev;
+
533  amrex::Vector<amrex::MultiFab*> m_Hwave_lev;
+
534  amrex::Vector<amrex::MultiFab*> m_Lwave_lev;
+
535  amrex::Vector<amrex::MultiFab*> m_eddyDiffs_lev;
+
536 };
+
537 
+
538 #endif /* ABLMOST_H */
ERF_Constants.H
ERF_IndexDefines.H
ERF_MOSTAverage.H
@@ -628,89 +632,89 @@
ERF_PBLHeight.H
ERF_TerrainMetrics.H
ABLMost
Definition: ERF_ABLMost.H:30
-
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ERF_ABLMost.H:511
-
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ERF_ABLMost.H:531
-
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ERF_ABLMost.H:520
-
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(const int &lev)
Definition: ERF_ABLMost.H:410
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ERF_ABLMost.H:521
-
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(const int &lev)
Definition: ERF_ABLMost.H:416
-
ABLMost::w_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > w_star
Definition: ERF_ABLMost.H:518
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ERF_ABLMost.H:513
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ERF_ABLMost.H:512
-
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ERF_ABLMost.H:504
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ERF_ABLMost.H:523
-
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ERF_ABLMost.H:506
-
ABLMost::depth
amrex::Real depth
Definition: ERF_ABLMost.H:509
-
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ERF_ABLMost.H:502
-
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ERF_ABLMost.H:528
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ERF_ABLMost.H:516
-
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ERF_ABLMost.H:471
+
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ERF_ABLMost.H:515
+
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ERF_ABLMost.H:535
+
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ERF_ABLMost.H:524
+
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(const int &lev)
Definition: ERF_ABLMost.H:414
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ERF_ABLMost.H:525
+
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(const int &lev)
Definition: ERF_ABLMost.H:420
+
ABLMost::w_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > w_star
Definition: ERF_ABLMost.H:522
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ERF_ABLMost.H:517
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ERF_ABLMost.H:516
+
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ERF_ABLMost.H:508
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ERF_ABLMost.H:527
+
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ERF_ABLMost.H:510
+
ABLMost::depth
amrex::Real depth
Definition: ERF_ABLMost.H:513
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ERF_ABLMost.H:506
+
ABLMost::compute_pblh
void compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
+
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ERF_ABLMost.H:532
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ERF_ABLMost.H:520
+
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ERF_ABLMost.H:475
ABLMost::ThetaCalcType::ADIABATIC
@ ADIABATIC
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
-
ABLMost::get_lmask
const amrex::iMultiFab * get_lmask(const int &lev)
Definition: ERF_ABLMost.H:442
-
ABLMost::lmask_min_reduce
int lmask_min_reduce(amrex::iMultiFab &lmask, const int &nghost)
Definition: ERF_ABLMost.H:445
-
ABLMost::have_variable_sea_roughness
bool have_variable_sea_roughness()
Definition: ERF_ABLMost.H:439
-
ABLMost::cnk_visc
bool cnk_visc
Definition: ERF_ABLMost.H:508
-
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ERF_ABLMost.H:510
-
ABLMost::get_q_star
const amrex::MultiFab * get_q_star(const int &lev)
Definition: ERF_ABLMost.H:419
-
ABLMost::pblh
amrex::Vector< std::unique_ptr< amrex::MultiFab > > pblh
Definition: ERF_ABLMost.H:522
-
ABLMost::update_mac_ptrs
void update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim)
Definition: ERF_ABLMost.H:402
-
ABLMost::get_z0
const amrex::FArrayBox * get_z0(const int &lev)
Definition: ERF_ABLMost.H:437
-
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ERF_ABLMost.H:529
-
ABLMost::read_custom_roughness
void read_custom_roughness(const int &lev, const std::string &fname)
Definition: ERF_ABLMost.cpp:588
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ERF_ABLMost.H:501
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ERF_ABLMost.H:507
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ERF_ABLMost.H:490
+
ABLMost::get_lmask
const amrex::iMultiFab * get_lmask(const int &lev)
Definition: ERF_ABLMost.H:446
+
ABLMost::lmask_min_reduce
int lmask_min_reduce(amrex::iMultiFab &lmask, const int &nghost)
Definition: ERF_ABLMost.H:449
+
ABLMost::have_variable_sea_roughness
bool have_variable_sea_roughness()
Definition: ERF_ABLMost.H:443
+
ABLMost::cnk_visc
bool cnk_visc
Definition: ERF_ABLMost.H:512
+
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ERF_ABLMost.H:514
+
ABLMost::get_q_star
const amrex::MultiFab * get_q_star(const int &lev)
Definition: ERF_ABLMost.H:423
+
ABLMost::pblh
amrex::Vector< std::unique_ptr< amrex::MultiFab > > pblh
Definition: ERF_ABLMost.H:526
+
ABLMost::update_mac_ptrs
void update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim)
Definition: ERF_ABLMost.H:406
+
ABLMost::get_z0
const amrex::FArrayBox * get_z0(const int &lev)
Definition: ERF_ABLMost.H:441
+
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ERF_ABLMost.H:533
+
ABLMost::read_custom_roughness
void read_custom_roughness(const int &lev, const std::string &fname)
Definition: ERF_ABLMost.cpp:592
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ERF_ABLMost.H:505
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ERF_ABLMost.H:511
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ERF_ABLMost.H:494
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)
Definition: ERF_ABLMost.cpp:145
-
ABLMost::pblh_type
PBLHeightCalcType pblh_type
Definition: ERF_ABLMost.H:493
-
ABLMost::FluxCalcType
FluxCalcType
Definition: ERF_ABLMost.H:464
+
ABLMost::pblh_type
PBLHeightCalcType pblh_type
Definition: ERF_ABLMost.H:497
+
ABLMost::FluxCalcType
FluxCalcType
Definition: ERF_ABLMost.H:468
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::CUSTOM
@ CUSTOM
Custom constant flux functional form.
ABLMost::FluxCalcType::ROTATE
@ ROTATE
Terrain rotation flux functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::update_pblh
void update_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_ABLMost.cpp:561
-
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ERF_ABLMost.H:527
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ERF_ABLMost.H:503
-
ABLMost::get_w_star
const amrex::MultiFab * get_w_star(const int &lev)
Definition: ERF_ABLMost.H:413
+
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ERF_ABLMost.H:531
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ERF_ABLMost.H:507
+
ABLMost::update_pblh
void update_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_ABLMost.cpp:561
+
ABLMost::get_w_star
const amrex::MultiFab * get_w_star(const int &lev)
Definition: ERF_ABLMost.H:417
ABLMost::impose_most_bcs
void impose_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xxmom_flux, amrex::MultiFab *yymom_flux, amrex::MultiFab *zzmom_flux, amrex::MultiFab *xymom_flux, amrex::MultiFab *yxmom_flux, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *xheat_flux, amrex::MultiFab *yheat_flux, amrex::MultiFab *zheat_flux, amrex::MultiFab *xqv_flux, amrex::MultiFab *yqv_flux, amrex::MultiFab *zqv_flux, amrex::MultiFab *z_phys)
Definition: ERF_ABLMost.cpp:211
-
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ERF_ABLMost.H:526
-
ABLMost::get_pblh
const amrex::MultiFab * get_pblh(const int &lev)
Definition: ERF_ABLMost.H:425
+
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ERF_ABLMost.H:530
+
ABLMost::get_pblh
const amrex::MultiFab * get_pblh(const int &lev)
Definition: ERF_ABLMost.H:429
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ERF_ABLMost.cpp:493
-
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ERF_ABLMost.H:491
-
ABLMost::m_rotate
bool m_rotate
Definition: ERF_ABLMost.H:498
-
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ERF_ABLMost.H:530
-
ABLMost::m_var_z0
bool m_var_z0
Definition: ERF_ABLMost.H:514
-
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ERF_ABLMost.H:492
-
ABLMost::use_moisture
bool use_moisture
Definition: ERF_ABLMost.H:496
+
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ERF_ABLMost.H:495
+
ABLMost::m_rotate
bool m_rotate
Definition: ERF_ABLMost.H:502
+
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ERF_ABLMost.H:534
+
ABLMost::m_var_z0
bool m_var_z0
Definition: ERF_ABLMost.H:518
+
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ERF_ABLMost.H:496
+
ABLMost::use_moisture
bool use_moisture
Definition: ERF_ABLMost.H:500
ABLMost::compute_most_bcs
void compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xxmom_flux, amrex::MultiFab *yymom_flux, amrex::MultiFab *zzmom_flux, amrex::MultiFab *xymom_flux, amrex::MultiFab *yxmom_flux, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *xheat_flux, amrex::MultiFab *yheat_flux, amrex::MultiFab *zheat_flux, amrex::MultiFab *xqv_flux, amrex::MultiFab *yqv_flux, amrex::MultiFab *zqv_flux, amrex::MultiFab *z_phys, const FluxCalc &flux_comp)
-
ABLMost::m_include_wstar
bool m_include_wstar
Definition: ERF_ABLMost.H:499
-
ABLMost::m_exp_most
bool m_exp_most
Definition: ERF_ABLMost.H:497
+
ABLMost::m_include_wstar
bool m_include_wstar
Definition: ERF_ABLMost.H:503
+
ABLMost::m_exp_most
bool m_exp_most
Definition: ERF_ABLMost.H:501
ABLMost::ABLMost
ABLMost(const amrex::Vector< amrex::Geometry > &geom, bool &use_exp_most, bool &use_rot_most, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::MultiFab >>> &sst_lev, amrex::Vector< amrex::Vector< std::unique_ptr< amrex::iMultiFab >>> &lmask_lev, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_data, amrex::Vector< amrex::Vector< amrex::MultiFab * >> lsm_flux, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Hwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Lwave, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &eddyDiffs, amrex::Real start_bdy_time=0.0, amrex::Real bdy_time_interval=0.0)
Definition: ERF_ABLMost.H:35
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ERF_ABLMost.H:519
-
ABLMost::get_t_surf
const amrex::MultiFab * get_t_surf(const int &lev)
Definition: ERF_ABLMost.H:431
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ERF_ABLMost.H:517
-
ABLMost::PBLHeightCalcType
PBLHeightCalcType
Definition: ERF_ABLMost.H:485
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ERF_ABLMost.H:523
+
ABLMost::get_t_surf
const amrex::MultiFab * get_t_surf(const int &lev)
Definition: ERF_ABLMost.H:435
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ERF_ABLMost.H:521
+
ABLMost::PBLHeightCalcType
PBLHeightCalcType
Definition: ERF_ABLMost.H:489
ABLMost::PBLHeightCalcType::None
@ None
ABLMost::PBLHeightCalcType::MYNN25
@ MYNN25
ABLMost::PBLHeightCalcType::YSU
@ YSU
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ERF_ABLMost.H:500
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ERF_ABLMost.H:489
-
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ERF_ABLMost.H:386
-
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ERF_ABLMost.H:525
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ERF_ABLMost.H:504
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ERF_ABLMost.H:493
+
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ERF_ABLMost.H:390
+
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ERF_ABLMost.H:529
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ERF_ABLMost.cpp:528
-
ABLMost::get_zref
amrex::Real get_zref()
Definition: ERF_ABLMost.H:434
-
ABLMost::RoughCalcType
RoughCalcType
Definition: ERF_ABLMost.H:477
+
ABLMost::get_zref
amrex::Real get_zref()
Definition: ERF_ABLMost.H:438
+
ABLMost::RoughCalcType
RoughCalcType
Definition: ERF_ABLMost.H:481
ABLMost::RoughCalcType::MODIFIED_CHARNOCK
@ MODIFIED_CHARNOCK
ABLMost::RoughCalcType::WAVE_COUPLED
@ WAVE_COUPLED
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
ABLMost::RoughCalcType::CHARNOCK
@ CHARNOCK
ABLMost::RoughCalcType::DONELAN
@ DONELAN
-
ABLMost::get_olen
const amrex::MultiFab * get_olen(const int &lev)
Definition: ERF_ABLMost.H:422
-
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(const int &lev, int comp)
Definition: ERF_ABLMost.H:428
-
ABLMost::compute_pblh
void compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQr_comp)
+
ABLMost::get_olen
const amrex::MultiFab * get_olen(const int &lev)
Definition: ERF_ABLMost.H:426
+
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(const int &lev, int comp)
Definition: ERF_ABLMost.H:432
ABLMost::update_fluxes
void update_fluxes(const int &lev, const amrex::Real &time, int max_iters=25)
Definition: ERF_ABLMost.cpp:12
-
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ERF_ABLMost.H:505
+
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ERF_ABLMost.H:509
MOSTAverage
Definition: ERF_MOSTAverage.H:12
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim)
Definition: ERF_MOSTAverage.cpp:228
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: ERF_MOSTAverage.H:95
diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp.html b/ERF__ComputeDiffusivityMYNN25_8cpp.html index 8df7e477e0..da76b4e804 100644 --- a/ERF__ComputeDiffusivityMYNN25_8cpp.html +++ b/ERF__ComputeDiffusivityMYNN25_8cpp.html @@ -143,12 +143,12 @@ - - + +

Functions

void ComputeDiffusivityMYNN25 (const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQr_comp)
 
void ComputeDiffusivityMYNN25 (const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
 

Function Documentation

- -

◆ ComputeDiffusivityMYNN25()

+ +

◆ ComputeDiffusivityMYNN25()

@@ -231,6 +231,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -244,244 +250,244 @@

-
25 {
-
26  const bool use_terrain = (z_phys_nd != nullptr);
-
27  const bool use_most = (most != nullptr);
-
28 
-
29  auto mynn = turbChoice.pbl_mynn;
-
30  auto level2 = turbChoice.pbl_mynn_level2;
-
31 
-
32  Real Lt_alpha = (mynn.config == MYNNConfigType::CHEN2021) ? 0.1 : 0.23;
-
33 
-
34  // Dirichlet flags to switch derivative stencil
-
35  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
-
36  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
-
37  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
-
38  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
-
39  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
-
40  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
-
41 
-
42  // Epsilon
-
43  Real eps = std::numeric_limits<Real>::epsilon();
-
44 
-
45 #ifdef _OPENMP
-
46 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
47 #endif
-
48  for ( MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi) {
-
49 
-
50  const Box &bx = mfi.growntilebox(1);
-
51  const Array4<Real const>& cell_data = cons_in.array(mfi);
-
52  const Array4<Real >& K_turb = eddyViscosity.array(mfi);
-
53  const Array4<Real const>& uvel = xvel.array(mfi);
-
54  const Array4<Real const>& vvel = yvel.array(mfi);
-
55 
-
56  // Compute some quantities that are constant in each column
-
57  // Sbox is shrunk to only include the interior of the domain in the vertical direction to compute integrals
-
58  // Box includes one ghost cell in each direction
-
59  const Box &dbx = geom.Domain();
-
60  Box sbx(bx.smallEnd(), bx.bigEnd());
-
61  sbx.grow(2,-1);
-
62  AMREX_ALWAYS_ASSERT(sbx.smallEnd(2) == dbx.smallEnd(2) && sbx.bigEnd(2) == dbx.bigEnd(2));
-
63 
-
64  const GeometryData gdata = geom.data();
-
65 
-
66  const Box xybx = PerpendicularBox<ZDir>(bx, IntVect{0,0,0});
-
67  FArrayBox qintegral(xybx,2);
-
68  qintegral.setVal<RunOn::Device>(0.0);
-
69  FArrayBox qturb(bx,1); FArrayBox qturb_old(bx,1);
-
70  const Array4<Real> qint = qintegral.array();
-
71  const Array4<Real> qvel = qturb.array();
-
72 
-
73  // vertical integrals to compute lengthscale
-
74  if (use_terrain) {
-
75  const Array4<Real const> &z_nd_arr = z_phys_nd->array(mfi);
-
76  const auto invCellSize = geom.InvCellSizeArray();
-
77  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
78  {
-
79  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,RhoKE_comp) / cell_data(i,j,k,Rho_comp));
-
80  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, "KE must have a positive value");
-
81 
-
82  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;
-
83  const Real Zval = Compute_Zrel_AtCellCenter(i,j,k,z_nd_arr);
-
84  const Real dz = Compute_h_zeta_AtCellCenter(i,j,k,invCellSize,z_nd_arr);
-
85  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*dz*fac);
-
86  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*dz*fac);
-
87  });
-
88  } else {
-
89  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
90  {
-
91  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,RhoKE_comp) / cell_data(i,j,k,Rho_comp));
-
92  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, "KE must have a positive value");
-
93 
-
94  // Not multiplying by dz: its constant and would fall out when we divide qint0/qint1 anyway
-
95 
-
96  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;
-
97  const Real Zval = gdata.ProbLo(2) + (k + 0.5)*gdata.CellSize(2);
-
98  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*fac);
-
99  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*fac);
-
100  });
-
101  }
-
102 
-
103  Real dz_inv = geom.InvCellSize(2);
-
104  const auto& dxInv = geom.InvCellSizeArray();
-
105  int izmin = geom.Domain().smallEnd(2);
-
106  int izmax = geom.Domain().bigEnd(2);
-
107 
-
108  // Spatially varying MOST
-
109  Real d_kappa = KAPPA;
-
110  Real d_gravity = CONST_GRAV;
-
111 
-
112  const auto& t_mean_mf = most->get_mac_avg(level,4); // theta_v
-
113  const auto& q_mean_mf = most->get_mac_avg(level,3); // q_v
-
114  const auto& u_star_mf = most->get_u_star(level);
-
115  const auto& t_star_mf = most->get_t_star(level);
-
116  const auto& q_star_mf = most->get_q_star(level);
-
117 
-
118  const auto& tm_arr = t_mean_mf->const_array(mfi);
-
119  const auto& qm_arr = q_mean_mf->const_array(mfi);
-
120  const auto& u_star_arr = u_star_mf->const_array(mfi);
-
121  const auto& t_star_arr = t_star_mf->const_array(mfi);
-
122  const auto& q_star_arr = (use_moisture) ? q_star_mf->const_array(mfi) : Array4<Real>{};
-
123 
-
124  const Array4<Real const> z_nd_arr = use_terrain ? z_phys_nd->const_array(mfi) : Array4<Real>{};
-
125 
-
126  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
127  {
-
128  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
-
129  // so that the non-explicit pathway works. Therefore, at this
-
130  // point we do NOT have valid ghost cells from MOST. We need to
-
131  // pass the MOST flag to use one-sided diffs here.
-
132 
-
133  // Compute some partial derivatives that we will need (second order)
-
134  // U and V derivatives are interpolated to account for staggered grid
-
135  const Real met_h_zeta = use_terrain ? Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_nd_arr) : 1.0;
-
136  Real dthetadz, dudz, dvdz;
-
137  ComputeVerticalDerivativesPBL(i, j, k,
-
138  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
-
139  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
140  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
141  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
142  dthetadz, dudz, dvdz,
-
143  RhoQv_comp, RhoQr_comp, use_most);
-
144 
-
145  // Spatially varying MOST
-
146  Real theta0 = tm_arr(i,j,0);
-
147  Real qv0 = qm_arr(i,j,0);
-
148  Real surface_heat_flux = -u_star_arr(i,j,0) * t_star_arr(i,j,0);
-
149  Real surface_latent_heat{0};
-
150  if (use_moisture) {
-
151  // Compute buoyancy flux (Stull Eqn. 4.4.5d)
-
152  surface_latent_heat = -u_star_arr(i,j,0) * q_star_arr(i,j,0);
-
153  surface_heat_flux *= (1.0 + 0.61*qv0);
-
154  surface_heat_flux += 0.61 * theta0 * surface_latent_heat;
-
155  }
-
156 
-
157  Real l_obukhov;
-
158  if (std::abs(surface_heat_flux) > eps) {
-
159  l_obukhov = -( theta0 * u_star_arr(i,j,0)*u_star_arr(i,j,0)*u_star_arr(i,j,0) )
-
160  / ( d_kappa * d_gravity * surface_heat_flux );
-
161  } else {
-
162  l_obukhov = std::numeric_limits<Real>::max();
-
163  }
-
164 
-
165  // Surface-layer length scale (NN09, Eqn. 53)
-
166  AMREX_ASSERT(l_obukhov != 0);
-
167  int lk = amrex::max(k,0);
-
168  const Real zval = use_terrain ? Compute_Zrel_AtCellCenter(i,j,lk,z_nd_arr)
-
169  : gdata.ProbLo(2) + (lk + 0.5)*gdata.CellSize(2);
-
170  const Real zeta = zval/l_obukhov;
-
171  Real l_S;
-
172  if (zeta >= 1.0) {
-
173  l_S = KAPPA*zval/3.7;
-
174  } else if (zeta >= 0) {
-
175  l_S = KAPPA*zval/(1+2.7*zeta);
-
176  } else {
-
177  l_S = KAPPA*zval*std::pow(1.0 - 100.0 * zeta, 0.2);
-
178  }
-
179 
-
180  // ABL-depth length scale (NN09, Eqn. 54)
-
181  Real l_T;
-
182  if (qint(i,j,0,1) > 0.0) {
-
183  l_T = Lt_alpha*qint(i,j,0,0)/qint(i,j,0,1);
-
184  } else {
-
185  l_T = std::numeric_limits<Real>::max();
-
186  }
-
187 
-
188  // Buoyancy length scale (NN09, Eqn. 55)
-
189  Real l_B;
-
190  if (dthetadz > 0) {
-
191  Real N_brunt_vaisala = std::sqrt(CONST_GRAV/theta0 * dthetadz);
-
192  if (zeta < 0) {
-
193  Real qc = CONST_GRAV/theta0 * surface_heat_flux * l_T; // velocity scale
-
194  qc = std::pow(qc,1.0/3.0);
-
195  l_B = (1.0 + 5.0*std::sqrt(qc/(N_brunt_vaisala * l_T))) * qvel(i,j,k)/N_brunt_vaisala;
-
196  } else {
-
197  l_B = qvel(i,j,k) / N_brunt_vaisala;
-
198  }
-
199  } else {
-
200  l_B = std::numeric_limits<Real>::max();
-
201  }
-
202 
-
203  // Master length scale
-
204  Real Lm;
-
205  if (mynn.config == MYNNConfigType::CHEN2021) {
-
206  Lm = std::pow(1.0/(l_S*l_S) + 1.0/(l_T*l_T) + 1.0/(l_B*l_B), -0.5);
-
207  } else {
-
208  // NN09, Eqn 52
-
209  Lm = 1.0 / (1.0/l_S + 1.0/l_T + 1.0/l_B);
-
210  }
-
211 
-
212  // Calculate nondimensional production terms
-
213  Real shearProd = dudz*dudz + dvdz*dvdz;
-
214  Real buoyProd = -(CONST_GRAV/theta0) * dthetadz;
-
215  Real L2_over_q2 = Lm*Lm/(qvel(i,j,k)*qvel(i,j,k));
-
216  Real GM = L2_over_q2 * shearProd;
-
217  Real GH = L2_over_q2 * buoyProd;
-
218 
-
219  // Equilibrium (Level-2) q calculation follows NN09, Appendix 2
-
220  Real Rf = level2.calc_Rf(GM, GH);
-
221  Real SM2 = level2.calc_SM(Rf);
-
222  Real qe2 = mynn.B1*Lm*Lm*SM2*(1.0-Rf)*shearProd;
-
223  Real qe = (qe2 < 0.0) ? 0.0 : std::sqrt(qe2);
-
224 
-
225  // Level 2 limiting (Helfand and Labraga 1988)
-
226  Real alphac = (qvel(i,j,k) > qe) ? 1.0 : qvel(i,j,k) / (qe + eps);
-
227 
-
228  // Level 2.5 stability functions
-
229  Real SM, SH, SQ;
-
230  mynn.calc_stability_funcs(SM,SH,SQ,GM,GH,alphac);
-
231 
-
232  // Clip SM, SH following WRF
-
233  SM = amrex::min(amrex::max(SM,mynn.SMmin), mynn.SMmax);
-
234  SH = amrex::min(amrex::max(SH,mynn.SHmin), mynn.SHmax);
-
235 
-
236  // Finally, compute the eddy viscosity/diffusivities
-
237  const Real rho = cell_data(i,j,k,Rho_comp);
-
238  K_turb(i,j,k,EddyDiff::Mom_v) = rho * Lm * qvel(i,j,k) * SM;
-
239  K_turb(i,j,k,EddyDiff::Theta_v) = rho * Lm * qvel(i,j,k) * SH;
-
240  K_turb(i,j,k,EddyDiff::KE_v) = rho * Lm * qvel(i,j,k) * SQ;
-
241 
-
242  // TODO: implement partial-condensation scheme?
-
243  // Currently, implementation matches NN09 without rain (i.e.,
-
244  // the liquid water potential temperature is equal to the
-
245  // potential temperature.
-
246 
-
247  // NN09 gives the total water content flux; this assumes that
-
248  // all the species have the same eddy diffusivity
-
249  if (mynn.diffuse_moistvars) {
-
250  K_turb(i,j,k,EddyDiff::Q_v) = rho * Lm * qvel(i,j,k) * SH;
-
251  }
-
252 
-
253  K_turb(i,j,k,EddyDiff::Turb_lengthscale) = Lm;
-
254  });
-
255  }
-
256 }
+
26 {
+
27  const bool use_terrain = (z_phys_nd != nullptr);
+
28  const bool use_most = (most != nullptr);
+
29 
+
30  auto mynn = turbChoice.pbl_mynn;
+
31  auto level2 = turbChoice.pbl_mynn_level2;
+
32 
+
33  Real Lt_alpha = (mynn.config == MYNNConfigType::CHEN2021) ? 0.1 : 0.23;
+
34 
+
35  // Dirichlet flags to switch derivative stencil
+
36  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
+
37  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
+
38  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
+
39  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
+
40  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
+
41  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
+
42 
+
43  // Epsilon
+
44  Real eps = std::numeric_limits<Real>::epsilon();
+
45 
+
46 #ifdef _OPENMP
+
47 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
48 #endif
+
49  for ( MFIter mfi(eddyViscosity,TilingIfNotGPU()); mfi.isValid(); ++mfi) {
+
50 
+
51  const Box &bx = mfi.growntilebox(1);
+
52  const Array4<Real const>& cell_data = cons_in.array(mfi);
+
53  const Array4<Real >& K_turb = eddyViscosity.array(mfi);
+
54  const Array4<Real const>& uvel = xvel.array(mfi);
+
55  const Array4<Real const>& vvel = yvel.array(mfi);
+
56 
+
57  // Compute some quantities that are constant in each column
+
58  // Sbox is shrunk to only include the interior of the domain in the vertical direction to compute integrals
+
59  // Box includes one ghost cell in each direction
+
60  const Box &dbx = geom.Domain();
+
61  Box sbx(bx.smallEnd(), bx.bigEnd());
+
62  sbx.grow(2,-1);
+
63  AMREX_ALWAYS_ASSERT(sbx.smallEnd(2) == dbx.smallEnd(2) && sbx.bigEnd(2) == dbx.bigEnd(2));
+
64 
+
65  const GeometryData gdata = geom.data();
+
66 
+
67  const Box xybx = PerpendicularBox<ZDir>(bx, IntVect{0,0,0});
+
68  FArrayBox qintegral(xybx,2);
+
69  qintegral.setVal<RunOn::Device>(0.0);
+
70  FArrayBox qturb(bx,1); FArrayBox qturb_old(bx,1);
+
71  const Array4<Real> qint = qintegral.array();
+
72  const Array4<Real> qvel = qturb.array();
+
73 
+
74  // vertical integrals to compute lengthscale
+
75  if (use_terrain) {
+
76  const Array4<Real const> &z_nd_arr = z_phys_nd->array(mfi);
+
77  const auto invCellSize = geom.InvCellSizeArray();
+
78  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
79  {
+
80  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,RhoKE_comp) / cell_data(i,j,k,Rho_comp));
+
81  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, "KE must have a positive value");
+
82 
+
83  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;
+
84  const Real Zval = Compute_Zrel_AtCellCenter(i,j,k,z_nd_arr);
+
85  const Real dz = Compute_h_zeta_AtCellCenter(i,j,k,invCellSize,z_nd_arr);
+
86  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*dz*fac);
+
87  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*dz*fac);
+
88  });
+
89  } else {
+
90  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
91  {
+
92  qvel(i,j,k) = std::sqrt(2.0 * cell_data(i,j,k,RhoKE_comp) / cell_data(i,j,k,Rho_comp));
+
93  AMREX_ASSERT_WITH_MESSAGE(qvel(i,j,k) > 0.0, "KE must have a positive value");
+
94 
+
95  // Not multiplying by dz: its constant and would fall out when we divide qint0/qint1 anyway
+
96 
+
97  Real fac = (sbx.contains(i,j,k)) ? 1.0 : 0.0;
+
98  const Real Zval = gdata.ProbLo(2) + (k + 0.5)*gdata.CellSize(2);
+
99  Gpu::Atomic::Add(&qint(i,j,0,0), Zval*qvel(i,j,k)*fac);
+
100  Gpu::Atomic::Add(&qint(i,j,0,1), qvel(i,j,k)*fac);
+
101  });
+
102  }
+
103 
+
104  Real dz_inv = geom.InvCellSize(2);
+
105  const auto& dxInv = geom.InvCellSizeArray();
+
106  int izmin = geom.Domain().smallEnd(2);
+
107  int izmax = geom.Domain().bigEnd(2);
+
108 
+
109  // Spatially varying MOST
+
110  Real d_kappa = KAPPA;
+
111  Real d_gravity = CONST_GRAV;
+
112 
+
113  const auto& t_mean_mf = most->get_mac_avg(level,4); // theta_v
+
114  const auto& q_mean_mf = most->get_mac_avg(level,3); // q_v
+
115  const auto& u_star_mf = most->get_u_star(level);
+
116  const auto& t_star_mf = most->get_t_star(level);
+
117  const auto& q_star_mf = most->get_q_star(level);
+
118 
+
119  const auto& tm_arr = t_mean_mf->const_array(mfi);
+
120  const auto& qm_arr = q_mean_mf->const_array(mfi);
+
121  const auto& u_star_arr = u_star_mf->const_array(mfi);
+
122  const auto& t_star_arr = t_star_mf->const_array(mfi);
+
123  const auto& q_star_arr = (use_moisture) ? q_star_mf->const_array(mfi) : Array4<Real>{};
+
124 
+
125  const Array4<Real const> z_nd_arr = use_terrain ? z_phys_nd->const_array(mfi) : Array4<Real>{};
+
126 
+
127  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
128  {
+
129  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
+
130  // so that the non-explicit pathway works. Therefore, at this
+
131  // point we do NOT have valid ghost cells from MOST. We need to
+
132  // pass the MOST flag to use one-sided diffs here.
+
133 
+
134  // Compute some partial derivatives that we will need (second order)
+
135  // U and V derivatives are interpolated to account for staggered grid
+
136  const Real met_h_zeta = use_terrain ? Compute_h_zeta_AtCellCenter(i,j,k,dxInv,z_nd_arr) : 1.0;
+
137  Real dthetadz, dudz, dvdz;
+
138  ComputeVerticalDerivativesPBL(i, j, k,
+
139  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
+
140  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
141  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
142  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
143  dthetadz, dudz, dvdz,
+
144  RhoQv_comp, RhoQc_comp, RhoQr_comp, use_most);
+
145 
+
146  // Spatially varying MOST
+
147  Real theta0 = tm_arr(i,j,0);
+
148  Real qv0 = qm_arr(i,j,0);
+
149  Real surface_heat_flux = -u_star_arr(i,j,0) * t_star_arr(i,j,0);
+
150  Real surface_latent_heat{0};
+
151  if (use_moisture) {
+
152  // Compute buoyancy flux (Stull Eqn. 4.4.5d)
+
153  surface_latent_heat = -u_star_arr(i,j,0) * q_star_arr(i,j,0);
+
154  surface_heat_flux *= (1.0 + 0.61*qv0);
+
155  surface_heat_flux += 0.61 * theta0 * surface_latent_heat;
+
156  }
+
157 
+
158  Real l_obukhov;
+
159  if (std::abs(surface_heat_flux) > eps) {
+
160  l_obukhov = -( theta0 * u_star_arr(i,j,0)*u_star_arr(i,j,0)*u_star_arr(i,j,0) )
+
161  / ( d_kappa * d_gravity * surface_heat_flux );
+
162  } else {
+
163  l_obukhov = std::numeric_limits<Real>::max();
+
164  }
+
165 
+
166  // Surface-layer length scale (NN09, Eqn. 53)
+
167  AMREX_ASSERT(l_obukhov != 0);
+
168  int lk = amrex::max(k,0);
+
169  const Real zval = use_terrain ? Compute_Zrel_AtCellCenter(i,j,lk,z_nd_arr)
+
170  : gdata.ProbLo(2) + (lk + 0.5)*gdata.CellSize(2);
+
171  const Real zeta = zval/l_obukhov;
+
172  Real l_S;
+
173  if (zeta >= 1.0) {
+
174  l_S = KAPPA*zval/3.7;
+
175  } else if (zeta >= 0) {
+
176  l_S = KAPPA*zval/(1+2.7*zeta);
+
177  } else {
+
178  l_S = KAPPA*zval*std::pow(1.0 - 100.0 * zeta, 0.2);
+
179  }
+
180 
+
181  // ABL-depth length scale (NN09, Eqn. 54)
+
182  Real l_T;
+
183  if (qint(i,j,0,1) > 0.0) {
+
184  l_T = Lt_alpha*qint(i,j,0,0)/qint(i,j,0,1);
+
185  } else {
+
186  l_T = std::numeric_limits<Real>::max();
+
187  }
+
188 
+
189  // Buoyancy length scale (NN09, Eqn. 55)
+
190  Real l_B;
+
191  if (dthetadz > 0) {
+
192  Real N_brunt_vaisala = std::sqrt(CONST_GRAV/theta0 * dthetadz);
+
193  if (zeta < 0) {
+
194  Real qc = CONST_GRAV/theta0 * surface_heat_flux * l_T; // velocity scale
+
195  qc = std::pow(qc,1.0/3.0);
+
196  l_B = (1.0 + 5.0*std::sqrt(qc/(N_brunt_vaisala * l_T))) * qvel(i,j,k)/N_brunt_vaisala;
+
197  } else {
+
198  l_B = qvel(i,j,k) / N_brunt_vaisala;
+
199  }
+
200  } else {
+
201  l_B = std::numeric_limits<Real>::max();
+
202  }
+
203 
+
204  // Master length scale
+
205  Real Lm;
+
206  if (mynn.config == MYNNConfigType::CHEN2021) {
+
207  Lm = std::pow(1.0/(l_S*l_S) + 1.0/(l_T*l_T) + 1.0/(l_B*l_B), -0.5);
+
208  } else {
+
209  // NN09, Eqn 52
+
210  Lm = 1.0 / (1.0/l_S + 1.0/l_T + 1.0/l_B);
+
211  }
+
212 
+
213  // Calculate nondimensional production terms
+
214  Real shearProd = dudz*dudz + dvdz*dvdz;
+
215  Real buoyProd = -(CONST_GRAV/theta0) * dthetadz;
+
216  Real L2_over_q2 = Lm*Lm/(qvel(i,j,k)*qvel(i,j,k));
+
217  Real GM = L2_over_q2 * shearProd;
+
218  Real GH = L2_over_q2 * buoyProd;
+
219 
+
220  // Equilibrium (Level-2) q calculation follows NN09, Appendix 2
+
221  Real Rf = level2.calc_Rf(GM, GH);
+
222  Real SM2 = level2.calc_SM(Rf);
+
223  Real qe2 = mynn.B1*Lm*Lm*SM2*(1.0-Rf)*shearProd;
+
224  Real qe = (qe2 < 0.0) ? 0.0 : std::sqrt(qe2);
+
225 
+
226  // Level 2 limiting (Helfand and Labraga 1988)
+
227  Real alphac = (qvel(i,j,k) > qe) ? 1.0 : qvel(i,j,k) / (qe + eps);
+
228 
+
229  // Level 2.5 stability functions
+
230  Real SM, SH, SQ;
+
231  mynn.calc_stability_funcs(SM,SH,SQ,GM,GH,alphac);
+
232 
+
233  // Clip SM, SH following WRF
+
234  SM = amrex::min(amrex::max(SM,mynn.SMmin), mynn.SMmax);
+
235  SH = amrex::min(amrex::max(SH,mynn.SHmin), mynn.SHmax);
+
236 
+
237  // Finally, compute the eddy viscosity/diffusivities
+
238  const Real rho = cell_data(i,j,k,Rho_comp);
+
239  K_turb(i,j,k,EddyDiff::Mom_v) = rho * Lm * qvel(i,j,k) * SM;
+
240  K_turb(i,j,k,EddyDiff::Theta_v) = rho * Lm * qvel(i,j,k) * SH;
+
241  K_turb(i,j,k,EddyDiff::KE_v) = rho * Lm * qvel(i,j,k) * SQ;
+
242 
+
243  // TODO: implement partial-condensation scheme?
+
244  // Currently, implementation matches NN09 without rain (i.e.,
+
245  // the liquid water potential temperature is equal to the
+
246  // potential temperature.
+
247 
+
248  // NN09 gives the total water content flux; this assumes that
+
249  // all the species have the same eddy diffusivity
+
250  if (mynn.diffuse_moistvars) {
+
251  K_turb(i,j,k,EddyDiff::Q_v) = rho * Lm * qvel(i,j,k) * SH;
+
252  }
+
253 
+
254  K_turb(i,j,k,EddyDiff::Turb_lengthscale) = Lm;
+
255  });
+
256  }
+
257 }
KAPPA
constexpr amrex::Real KAPPA
Definition: ERF_Constants.H:20
CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:21
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoKE_comp
#define RhoKE_comp
Definition: ERF_IndexDefines.H:38
MYNNConfigType::CHEN2021
@ CHEN2021
-
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:80
+
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:82
Compute_h_zeta_AtCellCenter
AMREX_FORCE_INLINE AMREX_GPU_DEVICE amrex::Real Compute_h_zeta_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:39
Compute_Zrel_AtCellCenter
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_Zrel_AtCellCenter(const int &i, const int &j, const int &k, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:352
BCVars::yvel_bc
@ yvel_bc
Definition: ERF_IndexDefines.H:89
@@ -503,20 +509,20 @@

Here is the call graph for this function:

-
- +
+ - - + +
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- +
+ diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp.js b/ERF__ComputeDiffusivityMYNN25_8cpp.js index e4936e5cd8..342131ddb3 100644 --- a/ERF__ComputeDiffusivityMYNN25_8cpp.js +++ b/ERF__ComputeDiffusivityMYNN25_8cpp.js @@ -1,4 +1,4 @@ var ERF__ComputeDiffusivityMYNN25_8cpp = [ - [ "ComputeDiffusivityMYNN25", "ERF__ComputeDiffusivityMYNN25_8cpp.html#a4b51698073bd67922bc46675fce968cf", null ] + [ "ComputeDiffusivityMYNN25", "ERF__ComputeDiffusivityMYNN25_8cpp.html#a391c08e1e3f5dbbe1bc501f0ad9ee26f", null ] ]; \ No newline at end of file diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.map b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.map similarity index 63% rename from ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.map rename to ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.map index 44fc321042..f8abb491af 100644 --- a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.map +++ b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.map @@ -2,6 +2,6 @@ - - + + diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.md5 b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.md5 new file mode 100644 index 0000000000..572dce5e01 --- /dev/null +++ b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.md5 @@ -0,0 +1 @@ +187323f2b1ef496176c2029909644e73 \ No newline at end of file diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.png b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.png similarity index 100% rename from ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.png rename to ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_cgraph.png diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.map b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.map similarity index 100% rename from ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.map rename to ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.map diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.md5 b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.md5 similarity index 100% rename from ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.md5 rename to ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.md5 diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.png b/ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.png similarity index 100% rename from ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_icgraph.png rename to ERF__ComputeDiffusivityMYNN25_8cpp_a391c08e1e3f5dbbe1bc501f0ad9ee26f_icgraph.png diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.md5 b/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.md5 deleted file mode 100644 index 8f0ac91dcb..0000000000 --- a/ERF__ComputeDiffusivityMYNN25_8cpp_a4b51698073bd67922bc46675fce968cf_cgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -c9ca7d9283921b0d6435fad245f849da \ No newline at end of file diff --git a/ERF__ComputeDiffusivityYSU_8cpp.html b/ERF__ComputeDiffusivityYSU_8cpp.html index acc973dfd5..33b5564722 100644 --- a/ERF__ComputeDiffusivityYSU_8cpp.html +++ b/ERF__ComputeDiffusivityYSU_8cpp.html @@ -416,59 +416,60 @@

204  constexpr Real prandtl_max = 4.0;

205  Real dthetadz, dudz, dvdz;
206  const int RhoQv_comp = -1;
-
207  const int RhoQr_comp = -1;
-
208  ComputeVerticalDerivativesPBL(i, j, k,
-
209  uvel, vvel, cell_data, izmin, izmax, 1.0/dz_terrain,
-
210  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
211  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
212  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
213  dthetadz, dudz, dvdz, RhoQv_comp, RhoQr_comp);
-
214  const Real shear_squared = dudz*dudz + dvdz*dvdz + 1.0e-9; // 1.0e-9 from WRF to avoid divide by zero
-
215  const Real theta = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
-
216  Real richardson = CONST_GRAV / theta * dthetadz / shear_squared;
-
217  const Real lambdadz = std::min(std::max(0.1*dz_terrain , lam0), 300.0); // in WRF, H10 paper just says use lam0
-
218  const Real lengthscale = lambdadz * KAPPA * zval / (lambdadz + KAPPA * zval);
-
219  const Real turbfact = lengthscale * lengthscale * std::sqrt(shear_squared);
-
220 
-
221  if (richardson < 0) {
-
222  richardson = max(richardson, min_richardson);
-
223  Real sqrt_richardson = std::sqrt(-richardson);
-
224  K_turb(i,j,k,EddyDiff::Mom_v) = rho * turbfact * (1.0 - 8.0 * richardson / (1.0 + 1.746 * sqrt_richardson));
-
225  K_turb(i,j,k,EddyDiff::Theta_v) = rho * turbfact * (1.0 - 8.0 * richardson / (1.0 + 1.286 * sqrt_richardson));
-
226  } else {
-
227  const Real oneplus5ri = 1.0 + 5.0 * richardson;
-
228  K_turb(i,j,k,EddyDiff::Theta_v) = rho * turbfact / (oneplus5ri * oneplus5ri);
-
229  const Real prandtl = std::min(1.0+2.1*richardson, prandtl_max); // limit from WRF
-
230  K_turb(i,j,k,EddyDiff::Mom_v) = K_turb(i,j,k,EddyDiff::Theta_v) * prandtl;
-
231  }
-
232  }
-
233 
-
234  // limit both diffusion coefficients - from WRF, not documented in papers
-
235  constexpr Real ckz = 0.001;
-
236  constexpr Real Kmax = 1000.0;
-
237  const Real rhoKmin = ckz * dz_terrain * rho;
-
238  const Real rhoKmax = rho * Kmax;
-
239  K_turb(i,j,k,EddyDiff::Mom_v) = std::max(std::min(K_turb(i,j,k,EddyDiff::Mom_v) ,rhoKmax), rhoKmin);
-
240  K_turb(i,j,k,EddyDiff::Theta_v) = std::max(std::min(K_turb(i,j,k,EddyDiff::Theta_v) ,rhoKmax), rhoKmin);
-
241  K_turb(i,j,k,EddyDiff::Turb_lengthscale) = pblh_arr(i,j,0);
-
242  });
-
243 
-
244  // HACK set bottom ghost cell to 1st cell
-
245  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
246  {
-
247  if (k==-1) {
-
248  K_turb(i,j,k,EddyDiff::Mom_v) = K_turb(i,j,0,EddyDiff::Mom_v);
-
249  K_turb(i,j,k,EddyDiff::Theta_v) = K_turb(i,j,0,EddyDiff::Theta_v);
-
250  }
-
251  });
-
252  }
-
253  }
-
254 }
+
207  const int RhoQc_comp = -1;
+
208  const int RhoQr_comp = -1;
+
209  ComputeVerticalDerivativesPBL(i, j, k,
+
210  uvel, vvel, cell_data, izmin, izmax, 1.0/dz_terrain,
+
211  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
212  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
213  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
214  dthetadz, dudz, dvdz, RhoQv_comp, RhoQc_comp, RhoQr_comp);
+
215  const Real shear_squared = dudz*dudz + dvdz*dvdz + 1.0e-9; // 1.0e-9 from WRF to avoid divide by zero
+
216  const Real theta = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
+
217  Real richardson = CONST_GRAV / theta * dthetadz / shear_squared;
+
218  const Real lambdadz = std::min(std::max(0.1*dz_terrain , lam0), 300.0); // in WRF, H10 paper just says use lam0
+
219  const Real lengthscale = lambdadz * KAPPA * zval / (lambdadz + KAPPA * zval);
+
220  const Real turbfact = lengthscale * lengthscale * std::sqrt(shear_squared);
+
221 
+
222  if (richardson < 0) {
+
223  richardson = max(richardson, min_richardson);
+
224  Real sqrt_richardson = std::sqrt(-richardson);
+
225  K_turb(i,j,k,EddyDiff::Mom_v) = rho * turbfact * (1.0 - 8.0 * richardson / (1.0 + 1.746 * sqrt_richardson));
+
226  K_turb(i,j,k,EddyDiff::Theta_v) = rho * turbfact * (1.0 - 8.0 * richardson / (1.0 + 1.286 * sqrt_richardson));
+
227  } else {
+
228  const Real oneplus5ri = 1.0 + 5.0 * richardson;
+
229  K_turb(i,j,k,EddyDiff::Theta_v) = rho * turbfact / (oneplus5ri * oneplus5ri);
+
230  const Real prandtl = std::min(1.0+2.1*richardson, prandtl_max); // limit from WRF
+
231  K_turb(i,j,k,EddyDiff::Mom_v) = K_turb(i,j,k,EddyDiff::Theta_v) * prandtl;
+
232  }
+
233  }
+
234 
+
235  // limit both diffusion coefficients - from WRF, not documented in papers
+
236  constexpr Real ckz = 0.001;
+
237  constexpr Real Kmax = 1000.0;
+
238  const Real rhoKmin = ckz * dz_terrain * rho;
+
239  const Real rhoKmax = rho * Kmax;
+
240  K_turb(i,j,k,EddyDiff::Mom_v) = std::max(std::min(K_turb(i,j,k,EddyDiff::Mom_v) ,rhoKmax), rhoKmin);
+
241  K_turb(i,j,k,EddyDiff::Theta_v) = std::max(std::min(K_turb(i,j,k,EddyDiff::Theta_v) ,rhoKmax), rhoKmin);
+
242  K_turb(i,j,k,EddyDiff::Turb_lengthscale) = pblh_arr(i,j,0);
+
243  });
+
244 
+
245  // HACK set bottom ghost cell to 1st cell
+
246  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
247  {
+
248  if (k==-1) {
+
249  K_turb(i,j,k,EddyDiff::Mom_v) = K_turb(i,j,0,EddyDiff::Mom_v);
+
250  K_turb(i,j,k,EddyDiff::Theta_v) = K_turb(i,j,0,EddyDiff::Theta_v);
+
251  }
+
252  });
+
253  }
+
254  }
+
255 }
KAPPA
constexpr amrex::Real KAPPA
Definition: ERF_Constants.H:20
CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:21
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoTheta_comp
#define RhoTheta_comp
Definition: ERF_IndexDefines.H:37
-
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:80
+
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:82
Compute_h_zeta_AtCellCenter
AMREX_FORCE_INLINE AMREX_GPU_DEVICE amrex::Real Compute_h_zeta_AtCellCenter(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:39
Compute_Zrel_AtCellCenter
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_Zrel_AtCellCenter(const int &i, const int &j, const int &k, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:352
BCVars::yvel_bc
@ yvel_bc
Definition: ERF_IndexDefines.H:89
@@ -496,8 +497,8 @@

- - + +

diff --git a/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.map b/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.map index 35f6929448..a81f06e37d 100644 --- a/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.map +++ b/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.map @@ -2,6 +2,6 @@ - - + + diff --git a/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.md5 b/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.md5 index 885b29f21a..a5adf8336b 100644 --- a/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.md5 +++ b/ERF__ComputeDiffusivityYSU_8cpp_a22f1a268ea7d16d0817f082a47ffc98a_cgraph.md5 @@ -1 +1 @@ -d1ff4a37b0b2aaab1a6ea5345a67bd29 \ No newline at end of file +0b986d35880d89b8749abffab2ae3cfe \ No newline at end of file diff --git a/ERF__ComputeTurbulentViscosity_8cpp.html b/ERF__ComputeTurbulentViscosity_8cpp.html index b9678b3341..80e649b434 100644 --- a/ERF__ComputeTurbulentViscosity_8cpp.html +++ b/ERF__ComputeTurbulentViscosity_8cpp.html @@ -374,26 +374,28 @@

486  }

487 
488  if (turbChoice.pbl_type == PBLType::MYNN25) {
-
489  ComputeDiffusivityMYNN25(xvel, yvel, cons_in, eddyViscosity,
+
489  ComputeDiffusivityMYNN25(xvel, yvel, cons_in, eddyViscosity,
490  geom, turbChoice, most, use_moisture,
491  level, bc_ptr, vert_only, z_phys_nd,
-
492  solverChoice.RhoQv_comp, solverChoice.RhoQr_comp);
-
493  } else if (turbChoice.pbl_type == PBLType::YSU) {
-
494  ComputeDiffusivityYSU(xvel, yvel, cons_in, eddyViscosity,
-
495  geom, turbChoice, most, use_moisture,
-
496  level, bc_ptr, vert_only, z_phys_nd);
-
497  }
-
498 }
-
ComputeDiffusivityMYNN25
void ComputeDiffusivityMYNN25(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_ComputeDiffusivityMYNN25.cpp:11
+
492  solverChoice.RhoQv_comp, solverChoice.RhoQc_comp,
+
493  solverChoice.RhoQr_comp);
+
494  } else if (turbChoice.pbl_type == PBLType::YSU) {
+
495  ComputeDiffusivityYSU(xvel, yvel, cons_in, eddyViscosity,
+
496  geom, turbChoice, most, use_moisture,
+
497  level, bc_ptr, vert_only, z_phys_nd);
+
498  }
+
499 }
+
ComputeDiffusivityMYNN25
void ComputeDiffusivityMYNN25(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_ComputeDiffusivityMYNN25.cpp:11
ComputeDiffusivityYSU
void ComputeDiffusivityYSU(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &cons_in, MultiFab &eddyViscosity, const Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool, int level, const BCRec *bc_ptr, bool, const std::unique_ptr< MultiFab > &z_phys_nd)
Definition: ERF_ComputeDiffusivityYSU.cpp:11
ComputeTurbulentViscosity
void ComputeTurbulentViscosity(const MultiFab &xvel, const MultiFab &yvel, const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const SolverChoice &solverChoice, std::unique_ptr< ABLMost > &most, const bool &exp_most, const bool &use_moisture, int level, const BCRec *bc_ptr, bool vert_only)
Definition: ERF_ComputeTurbulentViscosity.cpp:436
ComputeTurbulentViscosityLES
void ComputeTurbulentViscosityLES(const MultiFab &Tau11, const MultiFab &Tau22, const MultiFab &Tau33, const MultiFab &Tau12, const MultiFab &Tau13, const MultiFab &Tau23, const MultiFab &cons_in, MultiFab &eddyViscosity, MultiFab &Hfx1, MultiFab &Hfx2, MultiFab &Hfx3, MultiFab &Diss, const Geometry &geom, const MultiFab &mapfac_u, const MultiFab &mapfac_v, const std::unique_ptr< MultiFab > &z_phys_nd, const TurbChoice &turbChoice, const Real const_grav, std::unique_ptr< ABLMost > &most, const bool &exp_most)
Definition: ERF_ComputeTurbulentViscosity.cpp:32
Vars::xvel
@ xvel
Definition: ERF_IndexDefines.H:130
Vars::yvel
@ yvel
Definition: ERF_IndexDefines.H:131
-
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:645
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
-
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:639
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
+
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:651
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
+
SolverChoice::RhoQc_comp
int RhoQc_comp
Definition: ERF_DataStruct.H:645
+
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:644
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
TurbChoice::les_type
LESType les_type
Definition: ERF_TurbStruct.H:169
@@ -405,13 +407,13 @@

- + - - + + diff --git a/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.map b/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.map index 5a98b5aa72..828ed3db78 100644 --- a/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.map +++ b/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.map @@ -1,12 +1,12 @@ - + - - + + diff --git a/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.md5 b/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.md5 index 4e6ef8a556..562caf4156 100644 --- a/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.md5 +++ b/ERF__ComputeTurbulentViscosity_8cpp_a3865612b809df828f44e9c18218b1e37_cgraph.md5 @@ -1 +1 @@ -33d399744a46fbd24797b7118bd483fd \ No newline at end of file +e21ff1b5a2c009a831728d077be3a21c \ No newline at end of file diff --git a/ERF__Constants_8H.html b/ERF__Constants_8H.html index 46be389dc5..c441efd8c6 100644 --- a/ERF__Constants_8H.html +++ b/ERF__Constants_8H.html @@ -658,7 +658,7 @@

-

Referenced by calc_p_isothermal(), InputSoundingData::calc_rho_p(), TurbulentPerturbation::calc_tpi_amp(), calc_wstar(), Radiation::calculate_heating_rate(), COARE3_roughness(), ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), ComputeQKESourceTerms(), Kessler::Define(), SAM::Define(), Donelan_roughness(), ERFPhysBCFunct_base::impose_vertical_basestate_bcs(), HSEutils::init_isentropic_hse(), HSEutils::init_isentropic_hse_terrain(), SolverChoice::init_params(), Radiation::run(), and ERF::WritePlotFile().

+

Referenced by calc_p_isothermal(), InputSoundingData::calc_rho_p(), TurbulentPerturbation::calc_tpi_amp(), calc_wstar(), Radiation::calculate_heating_rate(), COARE3_roughness(), ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), ComputeQKESourceTerms(), Kessler::Define(), SAM::Define(), Donelan_roughness(), ERFPhysBCFunct_base::impose_vertical_basestate_bcs(), HSEutils::init_isentropic_hse(), HSEutils::init_isentropic_hse_terrain(), SolverChoice::init_params(), Radiation::run(), and ERF::WritePlotFile().

@@ -1088,7 +1088,7 @@

-

Referenced by ComputeDiffusivityMYNN25(), and ComputeDiffusivityYSU().

+

Referenced by ComputeDiffusivityMYNN25(), and ComputeDiffusivityYSU().

diff --git a/ERF__DataStruct_8H_source.html b/ERF__DataStruct_8H_source.html index c5cc439719..b578f47e98 100644 --- a/ERF__DataStruct_8H_source.html +++ b/ERF__DataStruct_8H_source.html @@ -195,554 +195,560 @@
107  pp.query_enum_case_insensitive("moisture_model",moisture_type);
108  if (moisture_type == MoistureType::SAM) {
109  RhoQv_comp = RhoQ1_comp;
-
110  RhoQr_comp = RhoQ4_comp;
-
111  } else if (moisture_type == MoistureType::SAM_NoIce) {
-
112  RhoQv_comp = RhoQ1_comp;
-
113  RhoQr_comp = RhoQ4_comp;
-
114  } else if (moisture_type == MoistureType::SAM_NoPrecip_NoIce) {
-
115  RhoQv_comp = RhoQ1_comp;
-
116  } else if (moisture_type == MoistureType::Kessler) {
+
110  RhoQc_comp = RhoQ2_comp;
+
111  RhoQr_comp = RhoQ4_comp;
+
112  } else if (moisture_type == MoistureType::SAM_NoIce) {
+
113  RhoQv_comp = RhoQ1_comp;
+
114  RhoQc_comp = RhoQ2_comp;
+
115  RhoQr_comp = RhoQ4_comp;
+
116  } else if (moisture_type == MoistureType::SAM_NoPrecip_NoIce) {
117  RhoQv_comp = RhoQ1_comp;
-
118  RhoQr_comp = RhoQ3_comp;
-
119  } else if (moisture_type == MoistureType::Kessler_NoRain) {
+
118  RhoQc_comp = RhoQ2_comp;
+
119  } else if (moisture_type == MoistureType::Kessler) {
120  RhoQv_comp = RhoQ1_comp;
-
121  }
-
122 
-
123  // TODO: should we set default for dry??
-
124  // Set a different default for moist vs dry
-
125  if (moisture_type != MoistureType::None) {
-
126  if (moisture_type == MoistureType::Kessler_NoRain ||
-
127  moisture_type == MoistureType::SAM ||
-
128  moisture_type == MoistureType::SAM_NoIce ||
-
129  moisture_type == MoistureType::SAM_NoPrecip_NoIce)
-
130  {
-
131  buoyancy_type = 1; // uses Rhoprime
-
132  } else {
-
133  buoyancy_type = 2; // uses Tprime
-
134  }
-
135  }
-
136 
-
137  // Which expression (1,2/3 or 4) to use for buoyancy
-
138  pp.query("buoyancy_type", buoyancy_type);
-
139 
-
140  // What type of land surface model to use
-
141  lsm_type = LandSurfaceType::None; // Default
-
142  pp.query_enum_case_insensitive("land_surface_model",lsm_type);
-
143 
-
144  // Is the terrain none, static or moving?
-
145  pp.query_enum_case_insensitive("terrain_type",terrain_type);
-
146  int n_zlevels = pp.countval("terrain_z_levels");
-
147  if (n_zlevels > 0 and terrain_type == TerrainType::None)
-
148  {
-
149  terrain_type = TerrainType::Static;
-
150  }
-
151 
-
152  // Use lagged_delta_rt in the fast integrator?
-
153  pp.query("use_lagged_delta_rt", use_lagged_delta_rt);
-
154 
-
155  // These default to true but are used for unit testing
-
156  pp.query("use_gravity", use_gravity);
-
157  gravity = use_gravity? CONST_GRAV: 0.0;
-
158 
-
159  pp.query("c_p", c_p);
-
160  rdOcp = R_d / c_p;
-
161 
-
162  read_int_string(max_level, "anelastic", anelastic, 0);
+
121  RhoQc_comp = RhoQ2_comp;
+
122  RhoQr_comp = RhoQ3_comp;
+
123  } else if (moisture_type == MoistureType::Kessler_NoRain) {
+
124  RhoQv_comp = RhoQ1_comp;
+
125  RhoQc_comp = RhoQ2_comp;
+
126  }
+
127 
+
128  // TODO: should we set default for dry??
+
129  // Set a different default for moist vs dry
+
130  if (moisture_type != MoistureType::None) {
+
131  if (moisture_type == MoistureType::Kessler_NoRain ||
+
132  moisture_type == MoistureType::SAM ||
+
133  moisture_type == MoistureType::SAM_NoIce ||
+
134  moisture_type == MoistureType::SAM_NoPrecip_NoIce)
+
135  {
+
136  buoyancy_type = 1; // uses Rhoprime
+
137  } else {
+
138  buoyancy_type = 2; // uses Tprime
+
139  }
+
140  }
+
141 
+
142  // Which expression (1,2/3 or 4) to use for buoyancy
+
143  pp.query("buoyancy_type", buoyancy_type);
+
144 
+
145  // What type of land surface model to use
+
146  lsm_type = LandSurfaceType::None; // Default
+
147  pp.query_enum_case_insensitive("land_surface_model",lsm_type);
+
148 
+
149  // Is the terrain none, static or moving?
+
150  pp.query_enum_case_insensitive("terrain_type",terrain_type);
+
151  int n_zlevels = pp.countval("terrain_z_levels");
+
152  if (n_zlevels > 0 and terrain_type == TerrainType::None)
+
153  {
+
154  terrain_type = TerrainType::Static;
+
155  }
+
156 
+
157  // Use lagged_delta_rt in the fast integrator?
+
158  pp.query("use_lagged_delta_rt", use_lagged_delta_rt);
+
159 
+
160  // These default to true but are used for unit testing
+
161  pp.query("use_gravity", use_gravity);
+
162  gravity = use_gravity? CONST_GRAV: 0.0;
163 
-
164  // *******************************************************************************
-
165  // Read substepping_type and allow for different values at each level
-
166  // *******************************************************************************
-
167  substepping_type.resize(max_level+1);
+
164  pp.query("c_p", c_p);
+
165  rdOcp = R_d / c_p;
+
166 
+
167  read_int_string(max_level, "anelastic", anelastic, 0);
168 
-
169  for (int i = 0; i <= max_level; i++) {
-
170  substepping_type[i] = SubsteppingType::Implicit;
-
171  }
-
172 
-
173  int nvals = pp.countval("substepping_type");
-
174  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
-
175 
-
176  if (nvals == 1) {
-
177  pp.query_enum_case_insensitive("substepping_type",substepping_type[0]);
-
178  for (int i = 1; i <= max_level; i++) {
-
179  substepping_type[i] = substepping_type[0];
-
180  }
-
181  } else if (nvals > 1) { // in this case we have asserted nvals >= max_level+1
-
182  for (int i = 0; i <= max_level; i++) {
-
183  pp.query_enum_case_insensitive("substepping_type",substepping_type[i],i);
-
184  }
-
185  }
-
186 
-
187  // *******************************************************************************
-
188  // Error check on deprecated input
-
189  // *******************************************************************************
-
190  int nvals_old = pp.countval("no_substepping");
-
191  if (nvals_old > 0) {
-
192  amrex::Abort("The no_substepping flag is deprecated -- set substepping_type instead");
-
193  }
+
169  // *******************************************************************************
+
170  // Read substepping_type and allow for different values at each level
+
171  // *******************************************************************************
+
172  substepping_type.resize(max_level+1);
+
173 
+
174  for (int i = 0; i <= max_level; i++) {
+
175  substepping_type[i] = SubsteppingType::Implicit;
+
176  }
+
177 
+
178  int nvals = pp.countval("substepping_type");
+
179  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
+
180 
+
181  if (nvals == 1) {
+
182  pp.query_enum_case_insensitive("substepping_type",substepping_type[0]);
+
183  for (int i = 1; i <= max_level; i++) {
+
184  substepping_type[i] = substepping_type[0];
+
185  }
+
186  } else if (nvals > 1) { // in this case we have asserted nvals >= max_level+1
+
187  for (int i = 0; i <= max_level; i++) {
+
188  pp.query_enum_case_insensitive("substepping_type",substepping_type[i],i);
+
189  }
+
190  }
+
191 
+
192  // *******************************************************************************
+
193  // Error check on deprecated input
194  // *******************************************************************************
-
195 
-
196  bool any_anelastic = false;
-
197  for (int i = 0; i <= max_level; ++i) {
-
198  if (anelastic[i] == 1) any_anelastic = true;
-
199  }
+
195  int nvals_old = pp.countval("no_substepping");
+
196  if (nvals_old > 0) {
+
197  amrex::Abort("The no_substepping flag is deprecated -- set substepping_type instead");
+
198  }
+
199  // *******************************************************************************
200 
-
201  // If anelastic at all, we do not advect rho -- it is always == rho0
-
202  if (any_anelastic == 1) {
-
203  constant_density = true;
-
204  project_initial_velocity = true;
-
205  buoyancy_type = 3; // (This isn't actually used when anelastic is set)
-
206  } else {
-
207  pp.query("project_initial_velocity", project_initial_velocity);
-
208 
-
209  constant_density = false; // We default to false but allow the user to set it
-
210  pp.query("constant_density", constant_density);
-
211  }
-
212 
-
213  // *******************************************************************************
-
214 
-
215  pp.query("ncorr", ncorr);
-
216  pp.query("poisson_abstol", poisson_abstol);
-
217  pp.query("poisson_reltol", poisson_reltol);
-
218 
-
219  for (int lev = 0; lev <= max_level; lev++) {
-
220  if (anelastic[lev] != 0)
-
221  {
-
222  substepping_type[lev] = SubsteppingType::None;
-
223  }
-
224  }
-
225 
-
226  pp.query("force_stage1_single_substep", force_stage1_single_substep);
-
227 
-
228  // Include Coriolis forcing?
-
229  pp.query("use_coriolis", use_coriolis);
+
201  bool any_anelastic = false;
+
202  for (int i = 0; i <= max_level; ++i) {
+
203  if (anelastic[i] == 1) any_anelastic = true;
+
204  }
+
205 
+
206  // If anelastic at all, we do not advect rho -- it is always == rho0
+
207  if (any_anelastic == 1) {
+
208  constant_density = true;
+
209  project_initial_velocity = true;
+
210  buoyancy_type = 3; // (This isn't actually used when anelastic is set)
+
211  } else {
+
212  pp.query("project_initial_velocity", project_initial_velocity);
+
213 
+
214  constant_density = false; // We default to false but allow the user to set it
+
215  pp.query("constant_density", constant_density);
+
216  }
+
217 
+
218  // *******************************************************************************
+
219 
+
220  pp.query("ncorr", ncorr);
+
221  pp.query("poisson_abstol", poisson_abstol);
+
222  pp.query("poisson_reltol", poisson_reltol);
+
223 
+
224  for (int lev = 0; lev <= max_level; lev++) {
+
225  if (anelastic[lev] != 0)
+
226  {
+
227  substepping_type[lev] = SubsteppingType::None;
+
228  }
+
229  }
230 
-
231  // Include Rayleigh damping (separate flags for each variable)
-
232  pp.query("rayleigh_damp_U", rayleigh_damp_U);
-
233  pp.query("rayleigh_damp_V", rayleigh_damp_V);
-
234  pp.query("rayleigh_damp_W", rayleigh_damp_W);
-
235  pp.query("rayleigh_damp_T", rayleigh_damp_T);
-
236  pp.query("rayleigh_dampcoef", rayleigh_dampcoef);
-
237  pp.query("rayleigh_zdamp", rayleigh_zdamp);
-
238 
-
239  // Flag to do explicit MOST formulation
-
240  pp.query("use_explicit_most",use_explicit_most);
-
241 
-
242  // Flag to do MOST rotations with terrain
-
243  pp.query("use_rotate_most",use_rotate_most);
-
244  if (use_rotate_most) {
-
245  AMREX_ASSERT_WITH_MESSAGE(terrain_type != TerrainType::None,"MOST stress rotations are only valid with terrain!");
-
246  AMREX_ASSERT_WITH_MESSAGE(use_explicit_most, "MOST Stress rotations are only valid with explicit MOST!");
-
247  }
-
248 
-
249  // Which external forcings?
-
250  abl_driver_type = ABLDriverType::None; // Default: no ABL driver for simulating classical fluid dynamics problems
-
251  pp.query_enum_case_insensitive("abl_driver_type",abl_driver_type);
-
252 
-
253  // Which type of inflow turbulent generation
-
254  pert_type = PerturbationType::None; // Default
-
255  pp.query_enum_case_insensitive("perturbation_type",pert_type);
-
256 
-
257  amrex::Vector<amrex::Real> abl_pressure_grad_in = {0.0, 0.0, 0.0};
-
258  pp.queryarr("abl_pressure_grad",abl_pressure_grad_in);
-
259  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];
-
260 
-
261  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
-
262  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
-
263  amrex::Print() << "Specified abl_geo_forcing: (";
-
264  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
-
265  abl_geo_forcing[i] = abl_geo_forcing_in[i];
-
266  amrex::Print() << abl_geo_forcing[i] << " ";
-
267  }
-
268  amrex::Print() << ")" << std::endl;
-
269  }
-
270 
-
271  if (use_coriolis)
-
272  {
-
273  build_coriolis_forcings();
+
231  pp.query("force_stage1_single_substep", force_stage1_single_substep);
+
232 
+
233  // Include Coriolis forcing?
+
234  pp.query("use_coriolis", use_coriolis);
+
235 
+
236  // Include Rayleigh damping (separate flags for each variable)
+
237  pp.query("rayleigh_damp_U", rayleigh_damp_U);
+
238  pp.query("rayleigh_damp_V", rayleigh_damp_V);
+
239  pp.query("rayleigh_damp_W", rayleigh_damp_W);
+
240  pp.query("rayleigh_damp_T", rayleigh_damp_T);
+
241  pp.query("rayleigh_dampcoef", rayleigh_dampcoef);
+
242  pp.query("rayleigh_zdamp", rayleigh_zdamp);
+
243 
+
244  // Flag to do explicit MOST formulation
+
245  pp.query("use_explicit_most",use_explicit_most);
+
246 
+
247  // Flag to do MOST rotations with terrain
+
248  pp.query("use_rotate_most",use_rotate_most);
+
249  if (use_rotate_most) {
+
250  AMREX_ASSERT_WITH_MESSAGE(terrain_type != TerrainType::None,"MOST stress rotations are only valid with terrain!");
+
251  AMREX_ASSERT_WITH_MESSAGE(use_explicit_most, "MOST Stress rotations are only valid with explicit MOST!");
+
252  }
+
253 
+
254  // Which external forcings?
+
255  abl_driver_type = ABLDriverType::None; // Default: no ABL driver for simulating classical fluid dynamics problems
+
256  pp.query_enum_case_insensitive("abl_driver_type",abl_driver_type);
+
257 
+
258  // Which type of inflow turbulent generation
+
259  pert_type = PerturbationType::None; // Default
+
260  pp.query_enum_case_insensitive("perturbation_type",pert_type);
+
261 
+
262  amrex::Vector<amrex::Real> abl_pressure_grad_in = {0.0, 0.0, 0.0};
+
263  pp.queryarr("abl_pressure_grad",abl_pressure_grad_in);
+
264  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];
+
265 
+
266  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
+
267  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
+
268  amrex::Print() << "Specified abl_geo_forcing: (";
+
269  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
+
270  abl_geo_forcing[i] = abl_geo_forcing_in[i];
+
271  amrex::Print() << abl_geo_forcing[i] << " ";
+
272  }
+
273  amrex::Print() << ")" << std::endl;
274  }
275 
-
276  pp.query("add_custom_rhotheta_forcing", custom_rhotheta_forcing);
-
277  pp.query("add_custom_moisture_forcing", custom_moisture_forcing);
-
278  pp.query("add_custom_w_subsidence", custom_w_subsidence);
-
279  pp.query("add_custom_geostrophic_profile", custom_geostrophic_profile);
-
280  pp.query("custom_forcing_uses_primitive_vars", custom_forcing_prim_vars);
-
281 
-
282  pp.query("nudging_from_input_sounding", nudging_from_input_sounding);
-
283 
-
284  have_geo_wind_profile = (!abl_geo_wind_table.empty() || custom_geostrophic_profile);
-
285  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(!(!abl_geo_wind_table.empty() && custom_geostrophic_profile),
-
286  "Should not have both abl_geo_wind_table and custom_geostrophic_profile set.");
-
287 
-
288  pp.query("Ave_Plane", ave_plane);
-
289 
-
290  pp.query("mp_clouds", do_cloud);
-
291  pp.query("mp_precip", do_precip);
-
292  pp.query("use_moist_background", use_moist_background);
-
293 
-
294  // Use numerical diffusion?
-
295  pp.query("use_NumDiff",use_NumDiff);
-
296  if(use_NumDiff) {
-
297  pp.query("NumDiffCoeff",NumDiffCoeff);
-
298  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
-
299  "Numerical diffusion coefficient must be between 0 & 1.");
-
300  NumDiffCoeff *= std::pow(2.0,-6);
-
301  }
-
302 
-
303  // Use monotonic advection?
-
304  pp.query("use_mono_adv",use_mono_adv);
-
305 
-
306  advChoice.init_params();
-
307  diffChoice.init_params();
-
308  spongeChoice.init_params();
-
309 
-
310  turbChoice.resize(max_level+1);
-
311  for (int lev = 0; lev <= max_level; lev++) {
-
312  turbChoice[lev].init_params(lev,max_level);
-
313  }
+
276  if (use_coriolis)
+
277  {
+
278  build_coriolis_forcings();
+
279  }
+
280 
+
281  pp.query("add_custom_rhotheta_forcing", custom_rhotheta_forcing);
+
282  pp.query("add_custom_moisture_forcing", custom_moisture_forcing);
+
283  pp.query("add_custom_w_subsidence", custom_w_subsidence);
+
284  pp.query("add_custom_geostrophic_profile", custom_geostrophic_profile);
+
285  pp.query("custom_forcing_uses_primitive_vars", custom_forcing_prim_vars);
+
286 
+
287  pp.query("nudging_from_input_sounding", nudging_from_input_sounding);
+
288 
+
289  have_geo_wind_profile = (!abl_geo_wind_table.empty() || custom_geostrophic_profile);
+
290  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(!(!abl_geo_wind_table.empty() && custom_geostrophic_profile),
+
291  "Should not have both abl_geo_wind_table and custom_geostrophic_profile set.");
+
292 
+
293  pp.query("Ave_Plane", ave_plane);
+
294 
+
295  pp.query("mp_clouds", do_cloud);
+
296  pp.query("mp_precip", do_precip);
+
297  pp.query("use_moist_background", use_moist_background);
+
298 
+
299  // Use numerical diffusion?
+
300  pp.query("use_NumDiff",use_NumDiff);
+
301  if(use_NumDiff) {
+
302  pp.query("NumDiffCoeff",NumDiffCoeff);
+
303  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
+
304  "Numerical diffusion coefficient must be between 0 & 1.");
+
305  NumDiffCoeff *= std::pow(2.0,-6);
+
306  }
+
307 
+
308  // Use monotonic advection?
+
309  pp.query("use_mono_adv",use_mono_adv);
+
310 
+
311  advChoice.init_params();
+
312  diffChoice.init_params();
+
313  spongeChoice.init_params();
314 
-
315  // YSU PBL: use consistent coriolis frequency
+
315  turbChoice.resize(max_level+1);
316  for (int lev = 0; lev <= max_level; lev++) {
-
317  if (turbChoice[lev].pbl_ysu_use_consistent_coriolis) {
-
318  if (use_coriolis) {
-
319  turbChoice[lev].pbl_ysu_coriolis_freq = coriolis_factor * sinphi;
-
320  if (lev == 0) {
-
321  amrex::Print() << "YSU PBL using ERF coriolis frequency: " << turbChoice[lev].pbl_ysu_coriolis_freq << std::endl;
-
322  }
-
323  } else {
-
324  amrex::Abort("YSU cannot use ERF coriolis frequency if not using coriolis");
-
325  }
-
326  }
-
327  }
-
328 
-
329 
-
330  // Which type of multilevel coupling
-
331  coupling_type = CouplingType::TwoWay; // Default
-
332  pp.query_enum_case_insensitive("coupling_type",coupling_type);
+
317  turbChoice[lev].init_params(lev,max_level);
+
318  }
+
319 
+
320  // YSU PBL: use consistent coriolis frequency
+
321  for (int lev = 0; lev <= max_level; lev++) {
+
322  if (turbChoice[lev].pbl_ysu_use_consistent_coriolis) {
+
323  if (use_coriolis) {
+
324  turbChoice[lev].pbl_ysu_coriolis_freq = coriolis_factor * sinphi;
+
325  if (lev == 0) {
+
326  amrex::Print() << "YSU PBL using ERF coriolis frequency: " << turbChoice[lev].pbl_ysu_coriolis_freq << std::endl;
+
327  }
+
328  } else {
+
329  amrex::Abort("YSU cannot use ERF coriolis frequency if not using coriolis");
+
330  }
+
331  }
+
332  }
333 
-
334  // Which type of windfarm model
-
335  windfarm_type = WindFarmType::None; // Default
-
336  pp.query_enum_case_insensitive("windfarm_type",windfarm_type);
-
337 
-
338  static std::string windfarm_loc_type_string = "None";
-
339  windfarm_loc_type = WindFarmLocType::None;
-
340  pp.query_enum_case_insensitive("windfarm_loc_type",windfarm_loc_type);
-
341 
-
342  pp.query("windfarm_loc_table", windfarm_loc_table);
-
343  pp.query("windfarm_spec_table", windfarm_spec_table);
-
344  pp.query("windfarm_blade_table", windfarm_blade_table);
-
345  pp.query("windfarm_airfoil_tables", windfarm_airfoil_tables);
-
346  pp.query("windfarm_spec_table_extra", windfarm_spec_table_extra);
-
347 
-
348  // Sampling distance upstream of the turbine to find the
-
349  // incoming free stream velocity as a factor of the diameter of the
-
350  // turbine. ie. the sampling distance will be this number multiplied
-
351  // by the diameter of the turbine
-
352  pp.query("sampling_distance_by_D", sampling_distance_by_D);
-
353  pp.query("turb_disk_angle_from_x", turb_disk_angle);
-
354 
-
355  pp.query("windfarm_x_shift",windfarm_x_shift);
-
356  pp.query("windfarm_y_shift",windfarm_y_shift);
-
357  // Test if time averaged data is to be output
-
358  pp.query("time_avg_vel",time_avg_vel);
+
334 
+
335  // Which type of multilevel coupling
+
336  coupling_type = CouplingType::TwoWay; // Default
+
337  pp.query_enum_case_insensitive("coupling_type",coupling_type);
+
338 
+
339  // Which type of windfarm model
+
340  windfarm_type = WindFarmType::None; // Default
+
341  pp.query_enum_case_insensitive("windfarm_type",windfarm_type);
+
342 
+
343  static std::string windfarm_loc_type_string = "None";
+
344  windfarm_loc_type = WindFarmLocType::None;
+
345  pp.query_enum_case_insensitive("windfarm_loc_type",windfarm_loc_type);
+
346 
+
347  pp.query("windfarm_loc_table", windfarm_loc_table);
+
348  pp.query("windfarm_spec_table", windfarm_spec_table);
+
349  pp.query("windfarm_blade_table", windfarm_blade_table);
+
350  pp.query("windfarm_airfoil_tables", windfarm_airfoil_tables);
+
351  pp.query("windfarm_spec_table_extra", windfarm_spec_table_extra);
+
352 
+
353  // Sampling distance upstream of the turbine to find the
+
354  // incoming free stream velocity as a factor of the diameter of the
+
355  // turbine. ie. the sampling distance will be this number multiplied
+
356  // by the diameter of the turbine
+
357  pp.query("sampling_distance_by_D", sampling_distance_by_D);
+
358  pp.query("turb_disk_angle_from_x", turb_disk_angle);
359 
-
360  check_params(max_level);
-
361  }
-
362 
-
363  void check_params(int max_level)
-
364  {
-
365  // Warn for PBL models and moisture - these may not yet be compatible
-
366  for (int lev = 0; lev <= max_level; lev++) {
-
367  if ((moisture_type != MoistureType::None) && (turbChoice[lev].pbl_type != PBLType::None)) {
-
368  amrex::Warning("\n*** WARNING: Moisture may not yet be compatible with PBL models, \n proceed with caution ***");
-
369  }
-
370  }
-
371  //
-
372  // Buoyancy type check
-
373  //
-
374  if (buoyancy_type != 1 && buoyancy_type != 2 && buoyancy_type != 3 && buoyancy_type != 4) {
-
375  amrex::Abort("buoyancy_type must be 1, 2, 3 or 4");
-
376  }
-
377 
-
378  if (!use_lagged_delta_rt && !(terrain_type == TerrainType::Moving)) {
-
379  amrex::Error("Can't turn off lagged_delta_rt when terrain not moving");
-
380  }
-
381 
-
382  //
-
383  // Wind farm checks
-
384  //
-
385  if (windfarm_type==WindFarmType::SimpleAD and sampling_distance_by_D < 0.0) {
-
386  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
-
387  " erf.sampling_distance_by_D in the inputs which specifies the upstream"
-
388  " distance as a factor of the turbine diameter at which the incoming free stream"
-
389  " velocity will be computed at.");
-
390  }
-
391  if ( (windfarm_type==WindFarmType::SimpleAD ||
-
392  windfarm_type==WindFarmType::GeneralAD ) && turb_disk_angle < 0.0) {
-
393  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
-
394  " erf.turb_disk_angle_from_x in the inputs which is the angle of the face of the"
-
395  " turbine disk from the x-axis. A turbine facing an oncoming flow in the x-direction"
-
396  " will have turb_disk_angle value of 90 deg.");
-
397  }
-
398  if (windfarm_loc_type == WindFarmLocType::lat_lon and (windfarm_x_shift < 0.0 or windfarm_y_shift < 0.0)) {
-
399  amrex::Abort("You are using windfarms with latitude-logitude option to position the turbines."
-
400  " For this you should provide the inputs erf.windfarm_x_shift and"
-
401  " erf.windfarm_y_shift which are the values by which the bounding box of the"
-
402  " windfarm is shifted from the x and the y axes.");
-
403  }
-
404  }
-
405 
-
406  void display(int max_level)
-
407  {
-
408  amrex::Print() << "SOLVER CHOICE: " << std::endl;
-
409  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
-
410  for (int lev = 0; lev <= max_level; lev++) {
-
411  amrex::Print() << "anelastic at level : " << lev << " is " << anelastic[lev] << std::endl;
-
412  if (substepping_type[lev] == SubsteppingType::None) {
-
413  amrex::Print() << "No substepping at level " << lev << std::endl;
-
414  } else if (substepping_type[lev] == SubsteppingType::Explicit) {
-
415  amrex::Print() << "Explicit substepping at level " << lev << std::endl;
-
416  } else if (substepping_type[lev] == SubsteppingType::Implicit) {
-
417  amrex::Print() << "Implicit substepping at level " << lev << std::endl;
-
418  }
-
419  }
-
420  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
-
421  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
-
422 
-
423  amrex::Print() << "Terrain Type: " << std::endl;
-
424  if (terrain_type == TerrainType::Static) {
-
425  amrex::Print() << " Static" << std::endl;
-
426  } else if (terrain_type == TerrainType::Moving) {
-
427  amrex::Print() << " Moving" << std::endl;
-
428  } else {
-
429  amrex::Print() << " None" << std::endl;
-
430  }
-
431 
-
432  amrex::Print() << "ABL Driver Type: " << std::endl;
-
433  if (abl_driver_type == ABLDriverType::None) {
+
360  pp.query("windfarm_x_shift",windfarm_x_shift);
+
361  pp.query("windfarm_y_shift",windfarm_y_shift);
+
362  // Test if time averaged data is to be output
+
363  pp.query("time_avg_vel",time_avg_vel);
+
364 
+
365  check_params(max_level);
+
366  }
+
367 
+
368  void check_params(int max_level)
+
369  {
+
370  // Warn for PBL models and moisture - these may not yet be compatible
+
371  for (int lev = 0; lev <= max_level; lev++) {
+
372  if ((moisture_type != MoistureType::None) && (turbChoice[lev].pbl_type != PBLType::None)) {
+
373  amrex::Warning("\n*** WARNING: Moisture may not yet be compatible with PBL models, \n proceed with caution ***");
+
374  }
+
375  }
+
376  //
+
377  // Buoyancy type check
+
378  //
+
379  if (buoyancy_type != 1 && buoyancy_type != 2 && buoyancy_type != 3 && buoyancy_type != 4) {
+
380  amrex::Abort("buoyancy_type must be 1, 2, 3 or 4");
+
381  }
+
382 
+
383  if (!use_lagged_delta_rt && !(terrain_type == TerrainType::Moving)) {
+
384  amrex::Error("Can't turn off lagged_delta_rt when terrain not moving");
+
385  }
+
386 
+
387  //
+
388  // Wind farm checks
+
389  //
+
390  if (windfarm_type==WindFarmType::SimpleAD and sampling_distance_by_D < 0.0) {
+
391  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
+
392  " erf.sampling_distance_by_D in the inputs which specifies the upstream"
+
393  " distance as a factor of the turbine diameter at which the incoming free stream"
+
394  " velocity will be computed at.");
+
395  }
+
396  if ( (windfarm_type==WindFarmType::SimpleAD ||
+
397  windfarm_type==WindFarmType::GeneralAD ) && turb_disk_angle < 0.0) {
+
398  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
+
399  " erf.turb_disk_angle_from_x in the inputs which is the angle of the face of the"
+
400  " turbine disk from the x-axis. A turbine facing an oncoming flow in the x-direction"
+
401  " will have turb_disk_angle value of 90 deg.");
+
402  }
+
403  if (windfarm_loc_type == WindFarmLocType::lat_lon and (windfarm_x_shift < 0.0 or windfarm_y_shift < 0.0)) {
+
404  amrex::Abort("You are using windfarms with latitude-logitude option to position the turbines."
+
405  " For this you should provide the inputs erf.windfarm_x_shift and"
+
406  " erf.windfarm_y_shift which are the values by which the bounding box of the"
+
407  " windfarm is shifted from the x and the y axes.");
+
408  }
+
409  }
+
410 
+
411  void display(int max_level)
+
412  {
+
413  amrex::Print() << "SOLVER CHOICE: " << std::endl;
+
414  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
+
415  for (int lev = 0; lev <= max_level; lev++) {
+
416  amrex::Print() << "anelastic at level : " << lev << " is " << anelastic[lev] << std::endl;
+
417  if (substepping_type[lev] == SubsteppingType::None) {
+
418  amrex::Print() << "No substepping at level " << lev << std::endl;
+
419  } else if (substepping_type[lev] == SubsteppingType::Explicit) {
+
420  amrex::Print() << "Explicit substepping at level " << lev << std::endl;
+
421  } else if (substepping_type[lev] == SubsteppingType::Implicit) {
+
422  amrex::Print() << "Implicit substepping at level " << lev << std::endl;
+
423  }
+
424  }
+
425  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
+
426  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
+
427 
+
428  amrex::Print() << "Terrain Type: " << std::endl;
+
429  if (terrain_type == TerrainType::Static) {
+
430  amrex::Print() << " Static" << std::endl;
+
431  } else if (terrain_type == TerrainType::Moving) {
+
432  amrex::Print() << " Moving" << std::endl;
+
433  } else {
434  amrex::Print() << " None" << std::endl;
-
435  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
-
436  amrex::Print() << " Pressure Gradient "
-
437  << amrex::RealVect(abl_pressure_grad[0],abl_pressure_grad[1],abl_pressure_grad[2])
-
438  << std::endl;
-
439  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
-
440  amrex::Print() << " Geostrophic Wind "
-
441  << amrex::RealVect(abl_geo_forcing[0],abl_geo_forcing[1],abl_geo_forcing[2])
-
442  << std::endl;
-
443  }
-
444 
-
445  if (max_level > 0) {
-
446  amrex::Print() << "Coupling Type: " << std::endl;
-
447  if (coupling_type == CouplingType::TwoWay) {
-
448  amrex::Print() << " Two-way" << std::endl;
-
449  } else if (coupling_type == CouplingType::OneWay) {
-
450  amrex::Print() << " One-way" << std::endl;
-
451  }
-
452  }
-
453 
-
454  amrex::Print() << "Buoyancy_type : " << buoyancy_type << std::endl;
-
455 
-
456  advChoice.display();
-
457  diffChoice.display();
-
458  spongeChoice.display();
-
459 
-
460  for (int lev = 0; lev <= max_level; lev++) {
-
461  turbChoice[lev].display(lev);
-
462  }
-
463  }
+
435  }
+
436 
+
437  amrex::Print() << "ABL Driver Type: " << std::endl;
+
438  if (abl_driver_type == ABLDriverType::None) {
+
439  amrex::Print() << " None" << std::endl;
+
440  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
+
441  amrex::Print() << " Pressure Gradient "
+
442  << amrex::RealVect(abl_pressure_grad[0],abl_pressure_grad[1],abl_pressure_grad[2])
+
443  << std::endl;
+
444  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
+
445  amrex::Print() << " Geostrophic Wind "
+
446  << amrex::RealVect(abl_geo_forcing[0],abl_geo_forcing[1],abl_geo_forcing[2])
+
447  << std::endl;
+
448  }
+
449 
+
450  if (max_level > 0) {
+
451  amrex::Print() << "Coupling Type: " << std::endl;
+
452  if (coupling_type == CouplingType::TwoWay) {
+
453  amrex::Print() << " Two-way" << std::endl;
+
454  } else if (coupling_type == CouplingType::OneWay) {
+
455  amrex::Print() << " One-way" << std::endl;
+
456  }
+
457  }
+
458 
+
459  amrex::Print() << "Buoyancy_type : " << buoyancy_type << std::endl;
+
460 
+
461  advChoice.display();
+
462  diffChoice.display();
+
463  spongeChoice.display();
464 
-
465  void build_coriolis_forcings()
-
466  {
-
467  amrex::ParmParse pp(pp_prefix);
-
468 
-
469  // Read the rotational time period (in seconds)
-
470  amrex::Real rot_time_period = 86400.0;
-
471  pp.query("rotational_time_period", rot_time_period);
-
472 
-
473  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
-
474  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
-
475 
-
476  amrex::Real latitude = 90.0;
-
477  pp.query("latitude", latitude);
-
478 
-
479  pp.query("coriolis_3d", coriolis_3d);
+
465  for (int lev = 0; lev <= max_level; lev++) {
+
466  turbChoice[lev].display(lev);
+
467  }
+
468  }
+
469 
+
470  void build_coriolis_forcings()
+
471  {
+
472  amrex::ParmParse pp(pp_prefix);
+
473 
+
474  // Read the rotational time period (in seconds)
+
475  amrex::Real rot_time_period = 86400.0;
+
476  pp.query("rotational_time_period", rot_time_period);
+
477 
+
478  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
+
479  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
480 
-
481  // Convert to radians
-
482  latitude *= (PI/180.);
-
483  sinphi = std::sin(latitude);
-
484  if (coriolis_3d) {
-
485  cosphi = std::cos(latitude);
-
486  }
-
487 
-
488  amrex::Print() << "Coriolis frequency, f = " << coriolis_factor * sinphi << " 1/s" << std::endl;
-
489 
-
490  if (abl_driver_type == ABLDriverType::GeostrophicWind) {
-
491  // Read in the geostrophic wind -- we only use this to construct
-
492  // the forcing term so no need to keep it
-
493  amrex::Vector<amrex::Real> abl_geo_wind(3);
-
494  pp.queryarr("abl_geo_wind",abl_geo_wind);
-
495 
-
496  if(!pp.query("abl_geo_wind_table",abl_geo_wind_table)) {
-
497  abl_geo_forcing = {
-
498  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
-
499  coriolis_factor * abl_geo_wind[0]*sinphi,
-
500  -coriolis_factor * abl_geo_wind[0]*cosphi
-
501  };
-
502  } else {
-
503  amrex::Print() << "NOTE: abl_geo_wind_table provided, ignoring input abl_geo_wind" << std::endl;
-
504  }
-
505  }
-
506  }
-
507 
-
508  void read_int_string (int max_level, const char* string_to_read,
-
509  amrex::Vector<int>& vec_to_fill, int default_int)
-
510  {
-
511  amrex::ParmParse pp("erf");
-
512  int nvals = pp.countval(string_to_read);
-
513  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
-
514  amrex::Vector<int> temp; temp.resize(nvals);
-
515  pp.queryarr(string_to_read,temp);
-
516  if (nvals == 0) {
-
517  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(default_int);
-
518  } else if (nvals == 1) {
-
519  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[0]);
-
520  } else {
-
521  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[i]);
-
522  }
-
523  }
-
524 
-
525  inline static
-
526  bool terrain_is_flat = false;
-
527 
-
528  inline static
-
529  TerrainType terrain_type = TerrainType::None;
-
530 
-
531  static
-
532  void set_flat_terrain_flag ()
-
533  {
-
534  terrain_is_flat = true;
-
535  }
-
536 
-
537  AdvChoice advChoice;
-
538  DiffChoice diffChoice;
-
539  SpongeChoice spongeChoice;
-
540  amrex::Vector<TurbChoice> turbChoice;
+
481  amrex::Real latitude = 90.0;
+
482  pp.query("latitude", latitude);
+
483 
+
484  pp.query("coriolis_3d", coriolis_3d);
+
485 
+
486  // Convert to radians
+
487  latitude *= (PI/180.);
+
488  sinphi = std::sin(latitude);
+
489  if (coriolis_3d) {
+
490  cosphi = std::cos(latitude);
+
491  }
+
492 
+
493  amrex::Print() << "Coriolis frequency, f = " << coriolis_factor * sinphi << " 1/s" << std::endl;
+
494 
+
495  if (abl_driver_type == ABLDriverType::GeostrophicWind) {
+
496  // Read in the geostrophic wind -- we only use this to construct
+
497  // the forcing term so no need to keep it
+
498  amrex::Vector<amrex::Real> abl_geo_wind(3);
+
499  pp.queryarr("abl_geo_wind",abl_geo_wind);
+
500 
+
501  if(!pp.query("abl_geo_wind_table",abl_geo_wind_table)) {
+
502  abl_geo_forcing = {
+
503  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
+
504  coriolis_factor * abl_geo_wind[0]*sinphi,
+
505  -coriolis_factor * abl_geo_wind[0]*cosphi
+
506  };
+
507  } else {
+
508  amrex::Print() << "NOTE: abl_geo_wind_table provided, ignoring input abl_geo_wind" << std::endl;
+
509  }
+
510  }
+
511  }
+
512 
+
513  void read_int_string (int max_level, const char* string_to_read,
+
514  amrex::Vector<int>& vec_to_fill, int default_int)
+
515  {
+
516  amrex::ParmParse pp("erf");
+
517  int nvals = pp.countval(string_to_read);
+
518  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
+
519  amrex::Vector<int> temp; temp.resize(nvals);
+
520  pp.queryarr(string_to_read,temp);
+
521  if (nvals == 0) {
+
522  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(default_int);
+
523  } else if (nvals == 1) {
+
524  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[0]);
+
525  } else {
+
526  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[i]);
+
527  }
+
528  }
+
529 
+
530  inline static
+
531  bool terrain_is_flat = false;
+
532 
+
533  inline static
+
534  TerrainType terrain_type = TerrainType::None;
+
535 
+
536  static
+
537  void set_flat_terrain_flag ()
+
538  {
+
539  terrain_is_flat = true;
+
540  }
541 
-
542  // Default prefix
-
543  std::string pp_prefix {"erf"};
-
544 
-
545  int force_stage1_single_substep = 1;
+
542  AdvChoice advChoice;
+
543  DiffChoice diffChoice;
+
544  SpongeChoice spongeChoice;
+
545  amrex::Vector<TurbChoice> turbChoice;
546 
-
547  amrex::Vector<SubsteppingType> substepping_type;
-
548  amrex::Vector<int> anelastic;
+
547  // Default prefix
+
548  std::string pp_prefix {"erf"};
549 
-
550  int constant_density = 0;
-
551  int ncorr = 1;
-
552  amrex::Real poisson_abstol = 1e-10;
-
553  amrex::Real poisson_reltol = 1e-10;
+
550  int force_stage1_single_substep = 1;
+
551 
+
552  amrex::Vector<SubsteppingType> substepping_type;
+
553  amrex::Vector<int> anelastic;
554 
-
555  bool test_mapfactor = false;
-
556 
-
557  int buoyancy_type = 1; // uses rhoprime directly
-
558 
-
559  // Specify what additional physics/forcing modules we use
-
560  bool use_gravity = false;
-
561  bool use_coriolis = false;
-
562  bool coriolis_3d = true;
+
555  int constant_density = 0;
+
556  int ncorr = 1;
+
557  amrex::Real poisson_abstol = 1e-10;
+
558  amrex::Real poisson_reltol = 1e-10;
+
559 
+
560  bool test_mapfactor = false;
+
561 
+
562  int buoyancy_type = 1; // uses rhoprime directly
563 
-
564  bool rayleigh_damp_U = false;
-
565  bool rayleigh_damp_V = false;
-
566  bool rayleigh_damp_W = false;
-
567  bool rayleigh_damp_T = false;
-
568  amrex::Real rayleigh_dampcoef = 0.2; // inverse time scale [1/s]
-
569  amrex::Real rayleigh_zdamp = 500.0; // damping layer depth [m]
-
570  amrex::Real rayleigh_ztop;
-
571 
-
572  // This defaults to true but can be set to false for moving terrain cases only
-
573  bool use_lagged_delta_rt = true;
-
574 
-
575  // Constants
-
576  amrex::Real gravity;
-
577  amrex::Real c_p = Cp_d; // specific heat at constant pressure for dry air [J/(kg-K)]
-
578  amrex::Real rdOcp;
+
564  // Specify what additional physics/forcing modules we use
+
565  bool use_gravity = false;
+
566  bool use_coriolis = false;
+
567  bool coriolis_3d = true;
+
568 
+
569  bool rayleigh_damp_U = false;
+
570  bool rayleigh_damp_V = false;
+
571  bool rayleigh_damp_W = false;
+
572  bool rayleigh_damp_T = false;
+
573  amrex::Real rayleigh_dampcoef = 0.2; // inverse time scale [1/s]
+
574  amrex::Real rayleigh_zdamp = 500.0; // damping layer depth [m]
+
575  amrex::Real rayleigh_ztop;
+
576 
+
577  // This defaults to true but can be set to false for moving terrain cases only
+
578  bool use_lagged_delta_rt = true;
579 
-
580  // Staggered z levels for vertical grid stretching
-
581  amrex::Real grid_stretching_ratio = 0;
-
582  amrex::Real zsurf = 0.0;
-
583  amrex::Real dz0;
+
580  // Constants
+
581  amrex::Real gravity;
+
582  amrex::Real c_p = Cp_d; // specific heat at constant pressure for dry air [J/(kg-K)]
+
583  amrex::Real rdOcp;
584 
-
585  bool project_initial_velocity = false;
-
586 
-
587  // Coriolis forcing
-
588  amrex::Real coriolis_factor = 0.0;
-
589  amrex::Real cosphi = 0.0;
-
590  amrex::Real sinphi = 0.0;
+
585  // Staggered z levels for vertical grid stretching
+
586  amrex::Real grid_stretching_ratio = 0;
+
587  amrex::Real zsurf = 0.0;
+
588  amrex::Real dz0;
+
589 
+
590  bool project_initial_velocity = false;
591 
-
592  // User-specified forcings in problem definition
-
593  bool custom_rhotheta_forcing = false;
-
594  bool custom_moisture_forcing = false;
-
595  bool custom_w_subsidence = false;
-
596  bool custom_geostrophic_profile = false;
-
597  bool custom_forcing_prim_vars = false;
-
598 
-
599  // Do we use source terms to nudge the solution towards
-
600  // the time-varying data provided in input sounding files?
-
601  bool nudging_from_input_sounding = false;
-
602 
-
603  // User specified MOST BC type
-
604  bool use_explicit_most = false;
-
605 
-
606  // MOST stress rotations
-
607  bool use_rotate_most = false;
-
608 
-
609  // User wishes to output time averaged velocity fields
-
610  bool time_avg_vel = false;
-
611 
-
612  // Type of perturbation
-
613  PerturbationType pert_type;
-
614 
-
615  // Numerical diffusion
-
616  bool use_NumDiff{false};
-
617  amrex::Real NumDiffCoeff{0.};
-
618 
-
619  // Monotonic advection limiter
-
620  bool use_mono_adv{false};
-
621 
-
622  CouplingType coupling_type;
-
623  MoistureType moisture_type;
-
624  WindFarmType windfarm_type;
-
625  WindFarmLocType windfarm_loc_type;
-
626  LandSurfaceType lsm_type;
-
627 
-
628  ABLDriverType abl_driver_type;
-
629  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_pressure_grad;
-
630  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_geo_forcing;
-
631  std::string abl_geo_wind_table;
-
632  bool have_geo_wind_profile {false};
-
633 
-
634  int ave_plane {2};
-
635  // Microphysics params
-
636  bool do_cloud {true};
-
637  bool do_precip {true};
-
638  bool use_moist_background {false};
-
639  int RhoQv_comp {-1};
-
640 
-
641  // This component will be model-dependent:
-
642  // if a model with no rain, this will stay -1
-
643  // if Kessler, then it will be set to RhoQ3
-
644  // if SAM, then it will be set to RhoQ4
-
645  int RhoQr_comp {-1};
+
592  // Coriolis forcing
+
593  amrex::Real coriolis_factor = 0.0;
+
594  amrex::Real cosphi = 0.0;
+
595  amrex::Real sinphi = 0.0;
+
596 
+
597  // User-specified forcings in problem definition
+
598  bool custom_rhotheta_forcing = false;
+
599  bool custom_moisture_forcing = false;
+
600  bool custom_w_subsidence = false;
+
601  bool custom_geostrophic_profile = false;
+
602  bool custom_forcing_prim_vars = false;
+
603 
+
604  // Do we use source terms to nudge the solution towards
+
605  // the time-varying data provided in input sounding files?
+
606  bool nudging_from_input_sounding = false;
+
607 
+
608  // User specified MOST BC type
+
609  bool use_explicit_most = false;
+
610 
+
611  // MOST stress rotations
+
612  bool use_rotate_most = false;
+
613 
+
614  // User wishes to output time averaged velocity fields
+
615  bool time_avg_vel = false;
+
616 
+
617  // Type of perturbation
+
618  PerturbationType pert_type;
+
619 
+
620  // Numerical diffusion
+
621  bool use_NumDiff{false};
+
622  amrex::Real NumDiffCoeff{0.};
+
623 
+
624  // Monotonic advection limiter
+
625  bool use_mono_adv{false};
+
626 
+
627  CouplingType coupling_type;
+
628  MoistureType moisture_type;
+
629  WindFarmType windfarm_type;
+
630  WindFarmLocType windfarm_loc_type;
+
631  LandSurfaceType lsm_type;
+
632 
+
633  ABLDriverType abl_driver_type;
+
634  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_pressure_grad;
+
635  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_geo_forcing;
+
636  std::string abl_geo_wind_table;
+
637  bool have_geo_wind_profile {false};
+
638 
+
639  int ave_plane {2};
+
640  // Microphysics params
+
641  bool do_cloud {true};
+
642  bool do_precip {true};
+
643  bool use_moist_background {false};
+
644  int RhoQv_comp {-1};
+
645  int RhoQc_comp {-1};
646 
-
647  std::string windfarm_loc_table, windfarm_spec_table, windfarm_spec_table_extra;
-
648  std::string windfarm_blade_table, windfarm_airfoil_tables;
-
649  amrex::Real sampling_distance_by_D = -1.0;
-
650  amrex::Real turb_disk_angle = -1.0;
-
651  amrex::Real windfarm_x_shift = -1.0;
-
652  amrex::Real windfarm_y_shift = -1.0;
-
653 
-
654  // Flag for valid canopy model
-
655  bool do_forest {false};
-
656 };
-
657 #endif
+
647  // This component will be model-dependent:
+
648  // if a model with no rain, this will stay -1
+
649  // if Kessler, then it will be set to RhoQ3
+
650  // if SAM, then it will be set to RhoQ4
+
651  int RhoQr_comp {-1};
+
652 
+
653  std::string windfarm_loc_table, windfarm_spec_table, windfarm_spec_table_extra;
+
654  std::string windfarm_blade_table, windfarm_airfoil_tables;
+
655  amrex::Real sampling_distance_by_D = -1.0;
+
656  amrex::Real turb_disk_angle = -1.0;
+
657  amrex::Real windfarm_x_shift = -1.0;
+
658  amrex::Real windfarm_y_shift = -1.0;
+
659 
+
660  // Flag for valid canopy model
+
661  bool do_forest {false};
+
662 };
+
663 #endif
ERF_AdvStruct.H
ERF_Constants.H
Cp_d
constexpr amrex::Real Cp_d
Definition: ERF_Constants.H:12
@@ -767,6 +773,7 @@
ERF_DiffStruct.H
ERF_IndexDefines.H
RhoQ4_comp
#define RhoQ4_comp
Definition: ERF_IndexDefines.H:45
+
RhoQ2_comp
#define RhoQ2_comp
Definition: ERF_IndexDefines.H:43
RhoQ3_comp
#define RhoQ3_comp
Definition: ERF_IndexDefines.H:44
RhoQ1_comp
#define RhoQ1_comp
Definition: ERF_IndexDefines.H:42
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: ERF_MicrophysicsUtils.H:219
@@ -789,88 +796,89 @@
DiffChoice::init_params
void init_params()
Definition: ERF_DiffStruct.H:21
DiffChoice::display
void display()
Definition: ERF_DiffStruct.H:56
SolverChoice
Definition: ERF_DataStruct.H:78
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:567
-
SolverChoice::dz0
amrex::Real dz0
Definition: ERF_DataStruct.H:583
-
SolverChoice::use_lagged_delta_rt
bool use_lagged_delta_rt
Definition: ERF_DataStruct.H:573
-
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: ERF_DataStruct.H:588
-
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:604
-
SolverChoice::windfarm_x_shift
amrex::Real windfarm_x_shift
Definition: ERF_DataStruct.H:651
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:565
-
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:645
-
SolverChoice::poisson_reltol
amrex::Real poisson_reltol
Definition: ERF_DataStruct.H:553
-
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:569
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:578
-
SolverChoice::read_int_string
void read_int_string(int max_level, const char *string_to_read, amrex::Vector< int > &vec_to_fill, int default_int)
Definition: ERF_DataStruct.H:508
-
SolverChoice::windfarm_spec_table
std::string windfarm_spec_table
Definition: ERF_DataStruct.H:647
-
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:620
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:532
-
SolverChoice::use_gravity
bool use_gravity
Definition: ERF_DataStruct.H:560
-
SolverChoice::build_coriolis_forcings
void build_coriolis_forcings()
Definition: ERF_DataStruct.H:465
-
SolverChoice::ncorr
int ncorr
Definition: ERF_DataStruct.H:551
-
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: ERF_DataStruct.H:545
-
SolverChoice::windfarm_spec_table_extra
std::string windfarm_spec_table_extra
Definition: ERF_DataStruct.H:647
-
SolverChoice::cosphi
amrex::Real cosphi
Definition: ERF_DataStruct.H:589
-
SolverChoice::lsm_type
LandSurfaceType lsm_type
Definition: ERF_DataStruct.H:626
-
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:577
-
SolverChoice::windfarm_loc_table
std::string windfarm_loc_table
Definition: ERF_DataStruct.H:647
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
-
SolverChoice::pp_prefix
std::string pp_prefix
Definition: ERF_DataStruct.H:543
-
SolverChoice::check_params
void check_params(int max_level)
Definition: ERF_DataStruct.H:363
-
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:593
-
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: ERF_DataStruct.H:630
-
SolverChoice::windfarm_loc_type
WindFarmLocType windfarm_loc_type
Definition: ERF_DataStruct.H:625
-
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:595
-
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:601
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:564
-
SolverChoice::custom_geostrophic_profile
bool custom_geostrophic_profile
Definition: ERF_DataStruct.H:596
-
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:570
-
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: ERF_DataStruct.H:581
-
SolverChoice::sinphi
amrex::Real sinphi
Definition: ERF_DataStruct.H:590
-
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:632
-
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:655
-
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: ERF_DataStruct.H:629
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: ERF_DataStruct.H:617
-
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:637
-
SolverChoice::substepping_type
amrex::Vector< SubsteppingType > substepping_type
Definition: ERF_DataStruct.H:547
-
SolverChoice::coriolis_3d
bool coriolis_3d
Definition: ERF_DataStruct.H:562
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:572
+
SolverChoice::dz0
amrex::Real dz0
Definition: ERF_DataStruct.H:588
+
SolverChoice::use_lagged_delta_rt
bool use_lagged_delta_rt
Definition: ERF_DataStruct.H:578
+
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: ERF_DataStruct.H:593
+
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:609
+
SolverChoice::windfarm_x_shift
amrex::Real windfarm_x_shift
Definition: ERF_DataStruct.H:657
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:570
+
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:651
+
SolverChoice::poisson_reltol
amrex::Real poisson_reltol
Definition: ERF_DataStruct.H:558
+
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:574
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:583
+
SolverChoice::read_int_string
void read_int_string(int max_level, const char *string_to_read, amrex::Vector< int > &vec_to_fill, int default_int)
Definition: ERF_DataStruct.H:513
+
SolverChoice::windfarm_spec_table
std::string windfarm_spec_table
Definition: ERF_DataStruct.H:653
+
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:625
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:537
+
SolverChoice::use_gravity
bool use_gravity
Definition: ERF_DataStruct.H:565
+
SolverChoice::build_coriolis_forcings
void build_coriolis_forcings()
Definition: ERF_DataStruct.H:470
+
SolverChoice::ncorr
int ncorr
Definition: ERF_DataStruct.H:556
+
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: ERF_DataStruct.H:550
+
SolverChoice::windfarm_spec_table_extra
std::string windfarm_spec_table_extra
Definition: ERF_DataStruct.H:653
+
SolverChoice::cosphi
amrex::Real cosphi
Definition: ERF_DataStruct.H:594
+
SolverChoice::lsm_type
LandSurfaceType lsm_type
Definition: ERF_DataStruct.H:631
+
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:582
+
SolverChoice::windfarm_loc_table
std::string windfarm_loc_table
Definition: ERF_DataStruct.H:653
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
+
SolverChoice::pp_prefix
std::string pp_prefix
Definition: ERF_DataStruct.H:548
+
SolverChoice::check_params
void check_params(int max_level)
Definition: ERF_DataStruct.H:368
+
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:598
+
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: ERF_DataStruct.H:635
+
SolverChoice::windfarm_loc_type
WindFarmLocType windfarm_loc_type
Definition: ERF_DataStruct.H:630
+
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:600
+
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:606
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:569
+
SolverChoice::RhoQc_comp
int RhoQc_comp
Definition: ERF_DataStruct.H:645
+
SolverChoice::custom_geostrophic_profile
bool custom_geostrophic_profile
Definition: ERF_DataStruct.H:601
+
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:575
+
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: ERF_DataStruct.H:586
+
SolverChoice::sinphi
amrex::Real sinphi
Definition: ERF_DataStruct.H:595
+
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:637
+
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:661
+
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: ERF_DataStruct.H:634
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: ERF_DataStruct.H:622
+
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:642
+
SolverChoice::substepping_type
amrex::Vector< SubsteppingType > substepping_type
Definition: ERF_DataStruct.H:552
+
SolverChoice::coriolis_3d
bool coriolis_3d
Definition: ERF_DataStruct.H:567
SolverChoice::init_params
void init_params(int max_level)
Definition: ERF_DataStruct.H:80
-
SolverChoice::sampling_distance_by_D
amrex::Real sampling_distance_by_D
Definition: ERF_DataStruct.H:649
-
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:639
-
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: ERF_DataStruct.H:555
-
SolverChoice::display
void display(int max_level)
Definition: ERF_DataStruct.H:406
-
SolverChoice::use_coriolis
bool use_coriolis
Definition: ERF_DataStruct.H:561
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:616
-
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:594
-
SolverChoice::windfarm_blade_table
std::string windfarm_blade_table
Definition: ERF_DataStruct.H:648
-
SolverChoice::zsurf
amrex::Real zsurf
Definition: ERF_DataStruct.H:582
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::project_initial_velocity
bool project_initial_velocity
Definition: ERF_DataStruct.H:585
-
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:548
-
SolverChoice::constant_density
int constant_density
Definition: ERF_DataStruct.H:550
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:537
-
SolverChoice::use_moist_background
bool use_moist_background
Definition: ERF_DataStruct.H:638
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:597
-
SolverChoice::abl_geo_wind_table
std::string abl_geo_wind_table
Definition: ERF_DataStruct.H:631
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::abl_driver_type
ABLDriverType abl_driver_type
Definition: ERF_DataStruct.H:628
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:566
-
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:613
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:539
-
SolverChoice::windfarm_type
WindFarmType windfarm_type
Definition: ERF_DataStruct.H:624
-
SolverChoice::buoyancy_type
int buoyancy_type
Definition: ERF_DataStruct.H:557
-
SolverChoice::poisson_abstol
amrex::Real poisson_abstol
Definition: ERF_DataStruct.H:552
-
SolverChoice::turb_disk_angle
amrex::Real turb_disk_angle
Definition: ERF_DataStruct.H:650
-
SolverChoice::windfarm_y_shift
amrex::Real windfarm_y_shift
Definition: ERF_DataStruct.H:652
-
SolverChoice::terrain_is_flat
static bool terrain_is_flat
Definition: ERF_DataStruct.H:526
-
SolverChoice::time_avg_vel
bool time_avg_vel
Definition: ERF_DataStruct.H:610
-
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:636
-
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:607
-
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:568
-
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:622
-
SolverChoice::windfarm_airfoil_tables
std::string windfarm_airfoil_tables
Definition: ERF_DataStruct.H:648
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::sampling_distance_by_D
amrex::Real sampling_distance_by_D
Definition: ERF_DataStruct.H:655
+
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:644
+
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: ERF_DataStruct.H:560
+
SolverChoice::display
void display(int max_level)
Definition: ERF_DataStruct.H:411
+
SolverChoice::use_coriolis
bool use_coriolis
Definition: ERF_DataStruct.H:566
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:621
+
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:599
+
SolverChoice::windfarm_blade_table
std::string windfarm_blade_table
Definition: ERF_DataStruct.H:654
+
SolverChoice::zsurf
amrex::Real zsurf
Definition: ERF_DataStruct.H:587
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::project_initial_velocity
bool project_initial_velocity
Definition: ERF_DataStruct.H:590
+
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:553
+
SolverChoice::constant_density
int constant_density
Definition: ERF_DataStruct.H:555
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:542
+
SolverChoice::use_moist_background
bool use_moist_background
Definition: ERF_DataStruct.H:643
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:602
+
SolverChoice::abl_geo_wind_table
std::string abl_geo_wind_table
Definition: ERF_DataStruct.H:636
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::abl_driver_type
ABLDriverType abl_driver_type
Definition: ERF_DataStruct.H:633
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:571
+
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:618
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:544
+
SolverChoice::windfarm_type
WindFarmType windfarm_type
Definition: ERF_DataStruct.H:629
+
SolverChoice::buoyancy_type
int buoyancy_type
Definition: ERF_DataStruct.H:562
+
SolverChoice::poisson_abstol
amrex::Real poisson_abstol
Definition: ERF_DataStruct.H:557
+
SolverChoice::turb_disk_angle
amrex::Real turb_disk_angle
Definition: ERF_DataStruct.H:656
+
SolverChoice::windfarm_y_shift
amrex::Real windfarm_y_shift
Definition: ERF_DataStruct.H:658
+
SolverChoice::terrain_is_flat
static bool terrain_is_flat
Definition: ERF_DataStruct.H:531
+
SolverChoice::time_avg_vel
bool time_avg_vel
Definition: ERF_DataStruct.H:615
+
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:641
+
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:612
+
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:573
+
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:627
+
SolverChoice::windfarm_airfoil_tables
std::string windfarm_airfoil_tables
Definition: ERF_DataStruct.H:654
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
SpongeChoice
Definition: ERF_SpongeStruct.H:15
SpongeChoice::display
void display()
Definition: ERF_SpongeStruct.H:45
SpongeChoice::init_params
void init_params()
Definition: ERF_SpongeStruct.H:17
diff --git a/ERF__DiffusionSrcForState__N_8cpp.html b/ERF__DiffusionSrcForState__N_8cpp.html index 68197e254c..96065fb3a3 100644 --- a/ERF__DiffusionSrcForState__N_8cpp.html +++ b/ERF__DiffusionSrcForState__N_8cpp.html @@ -1013,29 +1013,30 @@

713  auto pbl_mynn_B1_l = turbChoice.pbl_mynn.B1;
714 
715  const int rhoqv_comp = solverChoice.RhoQv_comp;
-
716  const int rhoqr_comp = solverChoice.RhoQr_comp;
-
717 
-
718  ParallelFor(bx,[=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
719  {
-
720  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
-
721  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
-
722  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
-
723  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
-
724  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
-
725  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
-
726 
-
727  // This computes shear production, buoyancy production, and dissipation terms only.
-
728  cell_rhs(i, j, k, qty_index) += ComputeQKESourceTerms(i,j,k,u,v,cell_data,cell_prim,
-
729  mu_turb,cellSizeInv,domain,
-
730  pbl_mynn_B1_l,tm_arr(i,j,0),
-
731  rhoqv_comp, rhoqr_comp,
-
732  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
733  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
734  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
735  use_most);
-
736  });
-
737  }
-
738 }
+
716  const int rhoqc_comp = solverChoice.RhoQc_comp;
+
717  const int rhoqr_comp = solverChoice.RhoQr_comp;
+
718 
+
719  ParallelFor(bx,[=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
720  {
+
721  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
+
722  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
+
723  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
+
724  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
+
725  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
+
726  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
+
727 
+
728  // This computes shear production, buoyancy production, and dissipation terms only.
+
729  cell_rhs(i, j, k, qty_index) += ComputeQKESourceTerms(i,j,k,u,v,cell_data,cell_prim,
+
730  mu_turb,cellSizeInv,domain,
+
731  pbl_mynn_B1_l,tm_arr(i,j,0),
+
732  rhoqv_comp, rhoqc_comp, rhoqr_comp,
+
733  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
734  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
735  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
736  use_most);
+
737  });
+
738  }
+
739 }
MolecDiffType::ConstantAlpha
@ ConstantAlpha
DiffusionSrcForState_N
void DiffusionSrcForState_N(const Box &bx, const Box &domain, int start_comp, int num_comp, const bool &exp_most, const Array4< const Real > &u, const Array4< const Real > &v, const Array4< const Real > &cell_data, const Array4< const Real > &cell_prim, const Array4< Real > &cell_rhs, const Array4< Real > &xflux, const Array4< Real > &yflux, const Array4< Real > &zflux, const GpuArray< Real, AMREX_SPACEDIM > &cellSizeInv, const Array4< const Real > &SmnSmn_a, const Array4< const Real > &mf_m, const Array4< const Real > &mf_u, const Array4< const Real > &mf_v, Array4< Real > &hfx_z, Array4< Real > &qfx1_z, Array4< Real > &qfx2_z, Array4< Real > &diss, const Array4< const Real > &mu_turb, const SolverChoice &solverChoice, const int level, const Array4< const Real > &tm_arr, const GpuArray< Real, AMREX_SPACEDIM > grav_gpu, const BCRec *bc_ptr, const bool use_most)
Definition: ERF_DiffusionSrcForState_N.cpp:40
RhoScalar_comp
#define RhoScalar_comp
Definition: ERF_IndexDefines.H:40
@@ -1054,7 +1055,7 @@

PrimScalar_comp
#define PrimScalar_comp
Definition: ERF_IndexDefines.H:52
PrimQ3_comp
#define PrimQ3_comp
Definition: ERF_IndexDefines.H:55
RhoKE_comp
#define RhoKE_comp
Definition: ERF_IndexDefines.H:38
-
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:157
+
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:160
BCVars::RhoScalar_bc_comp
@ RhoScalar_bc_comp
Definition: ERF_IndexDefines.H:80
BCVars::yvel_bc
@ yvel_bc
Definition: ERF_IndexDefines.H:89
BCVars::cons_bc
@ cons_bc
Definition: ERF_IndexDefines.H:76
@@ -1078,10 +1079,11 @@

DiffChoice::alpha_C
amrex::Real alpha_C
Definition: ERF_DiffStruct.H:80
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
MYNNLevel25::B1
amrex::Real B1
Definition: ERF_MYNNStruct.H:43
-
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:645
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:639
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
+
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:651
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::RhoQc_comp
int RhoQc_comp
Definition: ERF_DataStruct.H:645
+
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:644
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_mynn
MYNNLevel25 pbl_mynn
Definition: ERF_TurbStruct.H:194
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
@@ -1093,9 +1095,9 @@

- - - + + + diff --git a/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.map b/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.map index 5574f1edc0..e47061bb22 100644 --- a/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.map +++ b/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.map @@ -1,6 +1,6 @@ - - - + + + diff --git a/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.md5 b/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.md5 index 05dd162be1..9f6073477f 100644 --- a/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.md5 +++ b/ERF__DiffusionSrcForState__N_8cpp_a61d842d8a45b6d97948ce19b106bba0a_cgraph.md5 @@ -1 +1 @@ -6cf12e2e8f924ffa5d83f593e3c9d8b9 \ No newline at end of file +d2591f7b0a47eee1ecae6aa86cfbd64d \ No newline at end of file diff --git a/ERF__DiffusionSrcForState__T_8cpp.html b/ERF__DiffusionSrcForState__T_8cpp.html index c98038bb65..779c9ad359 100644 --- a/ERF__DiffusionSrcForState__T_8cpp.html +++ b/ERF__DiffusionSrcForState__T_8cpp.html @@ -1174,29 +1174,30 @@

824  auto pbl_mynn_B1_l = turbChoice.pbl_mynn.B1;
825 
826  const int rhoqv_comp = solverChoice.RhoQv_comp;
-
827  const int rhoqr_comp = solverChoice.RhoQr_comp;
-
828 
-
829  ParallelFor(bx,[=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
-
830  {
-
831  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
-
832  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
-
833  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
-
834  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
-
835  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
-
836  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
-
837 
-
838  // This computes shear production, buoyancy production, and dissipation terms only.
-
839  cell_rhs(i, j, k, qty_index) += ComputeQKESourceTerms(i,j,k,u,v,cell_data,cell_prim,
-
840  mu_turb,cellSizeInv,domain,
-
841  pbl_mynn_B1_l,tm_arr(i,j,0),
-
842  rhoqv_comp, rhoqr_comp,
-
843  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
844  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
845  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
846  use_most);
-
847  });
-
848  }
-
849 }
+
827  const int rhoqc_comp = solverChoice.RhoQc_comp;
+
828  const int rhoqr_comp = solverChoice.RhoQr_comp;
+
829 
+
830  ParallelFor(bx,[=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept
+
831  {
+
832  bool c_ext_dir_on_zlo = ( (bc_ptr[BCVars::cons_bc].lo(2) == ERFBCType::ext_dir) );
+
833  bool c_ext_dir_on_zhi = ( (bc_ptr[BCVars::cons_bc].lo(5) == ERFBCType::ext_dir) );
+
834  bool u_ext_dir_on_zlo = ( (bc_ptr[BCVars::xvel_bc].lo(2) == ERFBCType::ext_dir) );
+
835  bool u_ext_dir_on_zhi = ( (bc_ptr[BCVars::xvel_bc].lo(5) == ERFBCType::ext_dir) );
+
836  bool v_ext_dir_on_zlo = ( (bc_ptr[BCVars::yvel_bc].lo(2) == ERFBCType::ext_dir) );
+
837  bool v_ext_dir_on_zhi = ( (bc_ptr[BCVars::yvel_bc].lo(5) == ERFBCType::ext_dir) );
+
838 
+
839  // This computes shear production, buoyancy production, and dissipation terms only.
+
840  cell_rhs(i, j, k, qty_index) += ComputeQKESourceTerms(i,j,k,u,v,cell_data,cell_prim,
+
841  mu_turb,cellSizeInv,domain,
+
842  pbl_mynn_B1_l,tm_arr(i,j,0),
+
843  rhoqv_comp, rhoqc_comp, rhoqr_comp,
+
844  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
845  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
846  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
847  use_most);
+
848  });
+
849  }
+
850 }
MolecDiffType::ConstantAlpha
@ ConstantAlpha
DiffusionSrcForState_T
void DiffusionSrcForState_T(const Box &bx, const Box &domain, int start_comp, int num_comp, const bool &exp_most, const bool &rot_most, const Array4< const Real > &u, const Array4< const Real > &v, const Array4< const Real > &cell_data, const Array4< const Real > &cell_prim, const Array4< Real > &cell_rhs, const Array4< Real > &xflux, const Array4< Real > &yflux, const Array4< Real > &zflux, const Array4< const Real > &z_nd, const Array4< const Real > &ax, const Array4< const Real > &ay, const Array4< const Real > &az, const Array4< const Real > &detJ, const GpuArray< Real, AMREX_SPACEDIM > &cellSizeInv, const Array4< const Real > &SmnSmn_a, const Array4< const Real > &mf_m, const Array4< const Real > &mf_u, const Array4< const Real > &mf_v, Array4< Real > &hfx_x, Array4< Real > &hfx_y, Array4< Real > &hfx_z, Array4< Real > &qfx1_x, Array4< Real > &qfx1_y, Array4< Real > &qfx1_z, Array4< Real > &qfx2_z, Array4< Real > &diss, const Array4< const Real > &mu_turb, const SolverChoice &solverChoice, const int level, const Array4< const Real > &tm_arr, const GpuArray< Real, AMREX_SPACEDIM > grav_gpu, const BCRec *bc_ptr, const bool use_most)
Definition: ERF_DiffusionSrcForState_T.cpp:43
RhoScalar_comp
#define RhoScalar_comp
Definition: ERF_IndexDefines.H:40
@@ -1215,7 +1216,7 @@

PrimScalar_comp
#define PrimScalar_comp
Definition: ERF_IndexDefines.H:52
PrimQ3_comp
#define PrimQ3_comp
Definition: ERF_IndexDefines.H:55
RhoKE_comp
#define RhoKE_comp
Definition: ERF_IndexDefines.H:38
-
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:157
+
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:160
Compute_h_xi_AtIface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_xi_AtIface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:101
Compute_h_zeta_AtKface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtKface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:173
Compute_h_zeta_AtIface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtIface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: ERF_TerrainMetrics.H:87
@@ -1246,10 +1247,11 @@

DiffChoice::alpha_C
amrex::Real alpha_C
Definition: ERF_DiffStruct.H:80
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
MYNNLevel25::B1
amrex::Real B1
Definition: ERF_MYNNStruct.H:43
-
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:645
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:639
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
+
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:651
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::RhoQc_comp
int RhoQc_comp
Definition: ERF_DataStruct.H:645
+
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:644
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_mynn
MYNNLevel25 pbl_mynn
Definition: ERF_TurbStruct.H:194
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
@@ -1268,9 +1270,9 @@

- - - + + + diff --git a/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.map b/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.map index d18005152a..70530ca48a 100644 --- a/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.map +++ b/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.map @@ -7,7 +7,7 @@ - - - + + + diff --git a/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.md5 b/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.md5 index c0f8a18daa..51ee5af119 100644 --- a/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.md5 +++ b/ERF__DiffusionSrcForState__T_8cpp_ab29316749b16c72caa2fe0b7558397c9_cgraph.md5 @@ -1 +1 @@ -6d89fe1236a6ac1e527010c3ce97885f \ No newline at end of file +d0fb620e9f463cbba0c4864888baa053 \ No newline at end of file diff --git a/ERF__Kessler_8H_source.html b/ERF__Kessler_8H_source.html index 06fb8bd3d4..004bf18245 100644 --- a/ERF__Kessler_8H_source.html +++ b/ERF__Kessler_8H_source.html @@ -327,11 +327,11 @@
MicVar_Kess::NumVars
@ NumVars
Definition: ERF_Kessler.H:42
MicVar_Kess::qv
@ qv
Definition: ERF_Kessler.H:36
SolverChoice
Definition: ERF_DataStruct.H:78
-
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:577
-
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:637
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:636
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:582
+
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:642
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:641
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
diff --git a/ERF__MakeBuoyancy_8cpp.html b/ERF__MakeBuoyancy_8cpp.html index 51eb3e4401..8c368f6aa8 100644 --- a/ERF__MakeBuoyancy_8cpp.html +++ b/ERF__MakeBuoyancy_8cpp.html @@ -386,10 +386,10 @@

BaseState::th0_comp
@ th0_comp
Definition: ERF_IndexDefines.H:66
BaseState::r0_comp
@ r0_comp
Definition: ERF_IndexDefines.H:63
IntVars::cons
@ cons
Definition: ERF_IndexDefines.H:139
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:578
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::buoyancy_type
int buoyancy_type
Definition: ERF_DataStruct.H:557
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:583
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::buoyancy_type
int buoyancy_type
Definition: ERF_DataStruct.H:562

Referenced by make_mom_sources().

diff --git a/ERF__MakeMomSources_8cpp.html b/ERF__MakeMomSources_8cpp.html index 45554fb9cd..4811c60a8e 100644 --- a/ERF__MakeMomSources_8cpp.html +++ b/ERF__MakeMomSources_8cpp.html @@ -853,27 +853,27 @@

InputSoundingData::input_sounding_time
amrex::Vector< amrex::Real > input_sounding_time
Definition: ERF_InputSoundingData.H:315

InputSoundingData::tau_nudging
amrex::Real tau_nudging
Definition: ERF_InputSoundingData.H:312
InputSoundingData::U_inp_sound_d
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > U_inp_sound_d
Definition: ERF_InputSoundingData.H:326
-
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: ERF_DataStruct.H:588
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:565
-
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:569
-
SolverChoice::cosphi
amrex::Real cosphi
Definition: ERF_DataStruct.H:589
-
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: ERF_DataStruct.H:630
-
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:595
-
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:601
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:564
-
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:570
-
SolverChoice::sinphi
amrex::Real sinphi
Definition: ERF_DataStruct.H:590
-
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:632
-
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:655
-
SolverChoice::use_coriolis
bool use_coriolis
Definition: ERF_DataStruct.H:561
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:616
-
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:548
-
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:597
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:566
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:539
-
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:568
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: ERF_DataStruct.H:593
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:570
+
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:574
+
SolverChoice::cosphi
amrex::Real cosphi
Definition: ERF_DataStruct.H:594
+
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: ERF_DataStruct.H:635
+
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:600
+
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:606
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:569
+
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:575
+
SolverChoice::sinphi
amrex::Real sinphi
Definition: ERF_DataStruct.H:595
+
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:637
+
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:661
+
SolverChoice::use_coriolis
bool use_coriolis
Definition: ERF_DataStruct.H:566
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:621
+
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:553
+
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:602
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:571
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:544
+
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:573
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
SpongeChoice::sponge_type
std::string sponge_type
Definition: ERF_SpongeStruct.H:61
Here is the call graph for this function:
diff --git a/ERF__MakeSources_8cpp.html b/ERF__MakeSources_8cpp.html index 8094837a2c..e439c8a0e8 100644 --- a/ERF__MakeSources_8cpp.html +++ b/ERF__MakeSources_8cpp.html @@ -689,23 +689,23 @@

InputSoundingData::theta_inp_sound_d
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > theta_inp_sound_d
Definition: ERF_InputSoundingData.H:326
InputSoundingData::input_sounding_time
amrex::Vector< amrex::Real > input_sounding_time
Definition: ERF_InputSoundingData.H:315
InputSoundingData::tau_nudging
amrex::Real tau_nudging
Definition: ERF_InputSoundingData.H:312
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:567
-
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:569
-
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:593
-
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:595
-
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:601
-
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:570
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: ERF_DataStruct.H:617
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:616
-
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:594
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:597
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:613
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:539
-
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:568
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:572
+
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:574
+
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:598
+
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:600
+
SolverChoice::nudging_from_input_sounding
bool nudging_from_input_sounding
Definition: ERF_DataStruct.H:606
+
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:575
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: ERF_DataStruct.H:622
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:621
+
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:599
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::custom_forcing_prim_vars
bool custom_forcing_prim_vars
Definition: ERF_DataStruct.H:602
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:618
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:544
+
SolverChoice::rayleigh_dampcoef
amrex::Real rayleigh_dampcoef
Definition: ERF_DataStruct.H:573
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
SpongeChoice::sponge_type
std::string sponge_type
Definition: ERF_SpongeStruct.H:61
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
diff --git a/ERF__MakeTauTerms_8cpp.html b/ERF__MakeTauTerms_8cpp.html index 3a0ea1d5e2..35debf586d 100644 --- a/ERF__MakeTauTerms_8cpp.html +++ b/ERF__MakeTauTerms_8cpp.html @@ -758,11 +758,11 @@

DiffChoice::rho0_trans
amrex::Real rho0_trans
Definition: ERF_DiffStruct.H:83
DiffChoice::dynamicViscosity
amrex::Real dynamicViscosity
Definition: ERF_DiffStruct.H:88
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
-
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:604
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:607
+
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:609
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:612
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
TurbChoice::les_type
LESType les_type
Definition: ERF_TurbStruct.H:169
diff --git a/ERF__PBLHeight_8H_source.html b/ERF__PBLHeight_8H_source.html index d9b063cf53..6b8ea702dc 100644 --- a/ERF__PBLHeight_8H_source.html +++ b/ERF__PBLHeight_8H_source.html @@ -107,266 +107,267 @@
19  */
20  AMREX_GPU_HOST
21  AMREX_FORCE_INLINE
-
22  void compute_pblh(const amrex::Geometry& geom,
+
22  void compute_pblh(const amrex::Geometry& geom,
23  const amrex::MultiFab* z_phys_cc,
24  amrex::MultiFab* pblh,
25  const amrex::MultiFab& cons,
26  const amrex::iMultiFab* lmask,
27  const int RhoQv_comp,
-
28  const int RhoQr_comp) const
-
29  {
-
30 #if 0
-
31  // NOTE: Cannot use ReduceToPlane because it clips the box to the
-
32  // validbox only, i.e., lateral ghost cells aren't updated
-
33  int dir = 2; // z
-
34  auto const& cons_arrs = cons.const_arrays();
-
35  auto thetav_min = amrex::ReduceToPlane<amrex::ReduceOpMin,amrex::Real>(dir, bxlow, cons,
-
36  [=] AMREX_GPU_DEVICE (int box_no, int i, int j, int k) -> amrex::Real
-
37  {
-
38  return Thetav(i,j,k,cons_arrs[box_no],RhoQv_comp,RhoQr_comp);
-
39  });
-
40 #endif
-
41 
-
42  // Create 2D multifabs like pblh
-
43  auto const& ba = pblh->boxArray();
-
44  auto const& dm = pblh->DistributionMap();
-
45  auto const& ng = pblh->nGrowVect();
-
46 
-
47  amrex::MultiFab min_thetav(ba,dm,1,ng);
-
48  min_thetav.setVal(1.E34);
-
49 
-
50  amrex::MultiFab pblh_tke(ba,dm,1,ng);
-
51  pblh_tke.setVal(0);
-
52 
-
53  pblh->setVal(0);
-
54 
-
55  // Now, loop over columns...
-
56  for (amrex::MFIter mfi(cons,TileNoZ()); mfi.isValid(); ++mfi)
-
57  {
-
58  const amrex::Box& domain = geom.Domain();
-
59  amrex::Box gtbx = mfi.growntilebox();
-
60  gtbx.setSmall(2,domain.smallEnd(2)); // don't loop over ghost cells
-
61  gtbx.setBig(2,domain.bigEnd(2)); // in z
-
62 
-
63  auto min_thv_arr = min_thetav.array(mfi);
-
64  auto pblh_arr = pblh->array(mfi);
-
65  auto pblh_tke_arr = pblh_tke.array(mfi);
-
66 
-
67  const auto cons_arr = cons.const_array(mfi);
-
68  const auto lmask_arr = (lmask) ? lmask->const_array(mfi) : amrex::Array4<int> {};
-
69 
-
70  // -----------------------------------------------------
-
71  // WITH terrain/grid stretching
-
72  // -----------------------------------------------------
-
73  if (z_phys_cc)
-
74  {
-
75  const auto zphys_arr = z_phys_cc->const_array(mfi);
-
76 
-
77  // Need to sort out ghost cell differences (z_phys_cc has ng=1)
-
78  int imin = lbound(zphys_arr).x;
-
79  int jmin = lbound(zphys_arr).y;
-
80  int imax = ubound(zphys_arr).x;
-
81  int jmax = ubound(zphys_arr).y;
-
82 
-
83  // Find minimum thetav in the surface layer (this updates
-
84  // ghost cells, too)
-
85  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
86  {
-
87  int ii = amrex::max(amrex::min(i,imax),imin);
-
88  int jj = amrex::max(amrex::min(j,jmax),jmin);
-
89 
-
90  if (zphys_arr(ii,jj,k) < thetamin_height) {
-
91  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQr_comp);
-
92  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
-
93  }
-
94  });
-
95 
-
96  // This depends on TileNoZ and k increasing monotonically
-
97  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
98  {
-
99  int ii = amrex::max(amrex::min(i,imax),imin);
-
100  int jj = amrex::max(amrex::min(j,jmax),jmin);
-
101 
-
102  if (pblh_arr(i,j,0) == 0)
-
103  {
-
104  //
-
105  // Find PBL height based on thetav increase (best for CBLs)
-
106  //
-
107  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQr_comp);
-
108  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQr_comp);
-
109 
-
110  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
-
111  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
-
112  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
-
113  {
-
114  // Interpolate to get lowest height where theta = min_theta + theta_incr
-
115  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
-
116  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
-
117  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
-
118  }
-
119  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
-
120  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
-
121  {
-
122  // Interpolate to get lowest height where theta = min_theta + theta_incr
-
123  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
-
124  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
-
125  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
-
126  }
-
127  }
-
128  if (pblh_tke_arr(i,j,0) == 0)
-
129  {
-
130  //
-
131  // Find PBL height based on TKE (for SBLs only)
-
132  //
-
133  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
-
134  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
-
135  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
-
136  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
-
137  amrex::Real TKEeps = 0.05 * maxtke;
-
138  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
-
139 
-
140  if ((tke1 <= TKEeps) && (tke > TKEeps))
-
141  {
-
142  // Interpolate to get lowest height where TKE -> 0
-
143  pblh_tke_arr(i,j,0) = zphys_arr(ii,jj,k)
-
144  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(tke1-tke)
-
145  * (TKEeps - tke);
-
146  }
-
147  }
-
148  });
-
149  }
-
150  else
-
151  // -----------------------------------------------------
-
152  // NO terrain
-
153  // -----------------------------------------------------
-
154  {
-
155  const amrex::Real dz_no_terrain = geom.CellSize(2);
-
156 
-
157  // Find minimum thetav in the surface layer (this updates
-
158  // ghost cells, too)
-
159  // - box size is known a priori
-
160  int kmax = static_cast<int>(thetamin_height / dz_no_terrain);
-
161  AMREX_ASSERT(kmax > 0);
-
162  amrex::Box gtbxlow = gtbx;
-
163  gtbxlow.setBig(2,kmax);
-
164 
-
165  ParallelFor(gtbxlow, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
166  {
-
167  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQr_comp);
-
168  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
-
169  });
-
170 
-
171  // This depends on TileNoZ and k increasing monotonically
-
172  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
173  {
-
174  if (pblh_arr(i,j,0) == 0)
-
175  {
-
176  //
-
177  // Find PBL height based on thetav increase (best for CBLs)
-
178  //
-
179  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQr_comp);
-
180  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQr_comp);
-
181 
-
182  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
-
183  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
-
184  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
-
185  {
-
186  // Interpolate to get lowest height where theta = min_theta + theta_incr
-
187  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
-
188  + dz_no_terrain/(thv1-thv)
-
189  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
-
190  }
-
191  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
-
192  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
-
193  {
-
194  // Interpolate to get lowest height where theta = min_theta + theta_incr
-
195  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
-
196  + dz_no_terrain/(thv1-thv)
-
197  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
-
198  }
-
199  }
-
200  if (pblh_tke_arr(i,j,0) == 0)
-
201  {
-
202  //
-
203  // Find PBL height based on TKE (for SBLs only)
-
204  //
-
205  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
-
206  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
-
207  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
-
208  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
-
209  amrex::Real TKEeps = 0.05 * maxtke;
-
210  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
-
211 
-
212  if ((tke1 <= TKEeps) && (tke > TKEeps))
-
213  {
-
214  // Interpolate to get lowest height where TKE -> 0
-
215  pblh_tke_arr(i,j,0) = (k+0.5)*dz_no_terrain
-
216  + dz_no_terrain/(tke1-tke) * (TKEeps - tke);
-
217  }
-
218  }
-
219  });
-
220  }
-
221  }// MFIter
-
222 
-
223  //
-
224  // Calculate hybrid PBL height
-
225  //
-
226  for (amrex::MFIter mfi(*pblh); mfi.isValid(); ++mfi)
-
227  {
-
228  const auto cons_arr = cons.const_array(mfi);
-
229  auto pblh_tke_arr = pblh_tke.array(mfi);
-
230  auto pblh_arr = pblh->array(mfi);
-
231 
-
232  amrex::Box gtbx = mfi.growntilebox();
-
233  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
-
234  {
-
235  //
-
236  // Clip PBLH_TKE to more realistic values
-
237  //
-
238  // Note from WRF MYNN-EDMF: TKE-based PBLH can be very large in cells
-
239  // with convective precipiation (> 8km!), so an artificial limit is
-
240  // imposed to not let PBLH_TKE exceed the theta_v-based PBL height
-
241  // +/- 350 m. This has no impact on 98-99% of the domain, but is the
-
242  // simplest patch that adequately addresses these extremely large
-
243  // PBLHs.
-
244  amrex::Real zi = pblh_arr(i,j,0);
-
245  pblh_tke_arr(i,j,0) = amrex::max(
-
246  amrex::min(pblh_tke_arr(i,j,0), zi+350.),
-
247  amrex::max(zi-350., 10.));
-
248 
-
249  //
-
250  // Finally, blend between the two PBLH estimates
-
251  //
-
252  amrex::Real maxqke = 2.0 * cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
-
253  if (maxqke > 0.05) {
-
254  amrex::Real wt = 0.5*std::tanh((zi - sbl_lim)/sbl_damp) + 0.5;
-
255  pblh_arr(i,j,0) = (1.-wt)*pblh_tke_arr(i,j,0) + wt*pblh_arr(i,j,0);
-
256  }
-
257  });
-
258  }//MFIter
-
259  }
-
260 
-
261  static constexpr amrex::Real thetamin_height = 200.0; // [m] height below which min thetav is determined
-
262  static constexpr amrex::Real theta_incr_land = 1.25; // [K] theta increase that determines the height of the capping inversion over land
-
263  static constexpr amrex::Real theta_incr_water = 1.0; // [K] theta increase that determines the height of the capping inversion over water
-
264  static constexpr amrex::Real sbl_lim = 200.0; // [m] upper limit of the stable BL height
-
265  static constexpr amrex::Real sbl_damp = 400.0; // [m] transition length for blending
-
266 };
-
267 #endif
+
28  const int RhoQc_comp,
+
29  const int RhoQr_comp) const
+
30  {
+
31 #if 0
+
32  // NOTE: Cannot use ReduceToPlane because it clips the box to the
+
33  // validbox only, i.e., lateral ghost cells aren't updated
+
34  int dir = 2; // z
+
35  auto const& cons_arrs = cons.const_arrays();
+
36  auto thetav_min = amrex::ReduceToPlane<amrex::ReduceOpMin,amrex::Real>(dir, bxlow, cons,
+
37  [=] AMREX_GPU_DEVICE (int box_no, int i, int j, int k) -> amrex::Real
+
38  {
+
39  return Thetav(i,j,k,cons_arrs[box_no],RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
40  });
+
41 #endif
+
42 
+
43  // Create 2D multifabs like pblh
+
44  auto const& ba = pblh->boxArray();
+
45  auto const& dm = pblh->DistributionMap();
+
46  auto const& ng = pblh->nGrowVect();
+
47 
+
48  amrex::MultiFab min_thetav(ba,dm,1,ng);
+
49  min_thetav.setVal(1.E34);
+
50 
+
51  amrex::MultiFab pblh_tke(ba,dm,1,ng);
+
52  pblh_tke.setVal(0);
+
53 
+
54  pblh->setVal(0);
+
55 
+
56  // Now, loop over columns...
+
57  for (amrex::MFIter mfi(cons,TileNoZ()); mfi.isValid(); ++mfi)
+
58  {
+
59  const amrex::Box& domain = geom.Domain();
+
60  amrex::Box gtbx = mfi.growntilebox();
+
61  gtbx.setSmall(2,domain.smallEnd(2)); // don't loop over ghost cells
+
62  gtbx.setBig(2,domain.bigEnd(2)); // in z
+
63 
+
64  auto min_thv_arr = min_thetav.array(mfi);
+
65  auto pblh_arr = pblh->array(mfi);
+
66  auto pblh_tke_arr = pblh_tke.array(mfi);
+
67 
+
68  const auto cons_arr = cons.const_array(mfi);
+
69  const auto lmask_arr = (lmask) ? lmask->const_array(mfi) : amrex::Array4<int> {};
+
70 
+
71  // -----------------------------------------------------
+
72  // WITH terrain/grid stretching
+
73  // -----------------------------------------------------
+
74  if (z_phys_cc)
+
75  {
+
76  const auto zphys_arr = z_phys_cc->const_array(mfi);
+
77 
+
78  // Need to sort out ghost cell differences (z_phys_cc has ng=1)
+
79  int imin = lbound(zphys_arr).x;
+
80  int jmin = lbound(zphys_arr).y;
+
81  int imax = ubound(zphys_arr).x;
+
82  int jmax = ubound(zphys_arr).y;
+
83 
+
84  // Find minimum thetav in the surface layer (this updates
+
85  // ghost cells, too)
+
86  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
87  {
+
88  int ii = amrex::max(amrex::min(i,imax),imin);
+
89  int jj = amrex::max(amrex::min(j,jmax),jmin);
+
90 
+
91  if (zphys_arr(ii,jj,k) < thetamin_height) {
+
92  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
93  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
+
94  }
+
95  });
+
96 
+
97  // This depends on TileNoZ and k increasing monotonically
+
98  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
99  {
+
100  int ii = amrex::max(amrex::min(i,imax),imin);
+
101  int jj = amrex::max(amrex::min(j,jmax),jmin);
+
102 
+
103  if (pblh_arr(i,j,0) == 0)
+
104  {
+
105  //
+
106  // Find PBL height based on thetav increase (best for CBLs)
+
107  //
+
108  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
109  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
110 
+
111  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
+
112  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
+
113  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
+
114  {
+
115  // Interpolate to get lowest height where theta = min_theta + theta_incr
+
116  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
+
117  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
+
118  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
+
119  }
+
120  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
+
121  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
+
122  {
+
123  // Interpolate to get lowest height where theta = min_theta + theta_incr
+
124  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
+
125  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
+
126  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
+
127  }
+
128  }
+
129  if (pblh_tke_arr(i,j,0) == 0)
+
130  {
+
131  //
+
132  // Find PBL height based on TKE (for SBLs only)
+
133  //
+
134  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
+
135  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
+
136  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
+
137  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
+
138  amrex::Real TKEeps = 0.05 * maxtke;
+
139  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
+
140 
+
141  if ((tke1 <= TKEeps) && (tke > TKEeps))
+
142  {
+
143  // Interpolate to get lowest height where TKE -> 0
+
144  pblh_tke_arr(i,j,0) = zphys_arr(ii,jj,k)
+
145  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(tke1-tke)
+
146  * (TKEeps - tke);
+
147  }
+
148  }
+
149  });
+
150  }
+
151  else
+
152  // -----------------------------------------------------
+
153  // NO terrain
+
154  // -----------------------------------------------------
+
155  {
+
156  const amrex::Real dz_no_terrain = geom.CellSize(2);
+
157 
+
158  // Find minimum thetav in the surface layer (this updates
+
159  // ghost cells, too)
+
160  // - box size is known a priori
+
161  int kmax = static_cast<int>(thetamin_height / dz_no_terrain);
+
162  AMREX_ASSERT(kmax > 0);
+
163  amrex::Box gtbxlow = gtbx;
+
164  gtbxlow.setBig(2,kmax);
+
165 
+
166  ParallelFor(gtbxlow, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
167  {
+
168  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
169  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
+
170  });
+
171 
+
172  // This depends on TileNoZ and k increasing monotonically
+
173  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
174  {
+
175  if (pblh_arr(i,j,0) == 0)
+
176  {
+
177  //
+
178  // Find PBL height based on thetav increase (best for CBLs)
+
179  //
+
180  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
181  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
+
182 
+
183  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
+
184  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
+
185  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
+
186  {
+
187  // Interpolate to get lowest height where theta = min_theta + theta_incr
+
188  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
+
189  + dz_no_terrain/(thv1-thv)
+
190  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
+
191  }
+
192  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
+
193  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
+
194  {
+
195  // Interpolate to get lowest height where theta = min_theta + theta_incr
+
196  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
+
197  + dz_no_terrain/(thv1-thv)
+
198  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
+
199  }
+
200  }
+
201  if (pblh_tke_arr(i,j,0) == 0)
+
202  {
+
203  //
+
204  // Find PBL height based on TKE (for SBLs only)
+
205  //
+
206  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
+
207  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
+
208  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
+
209  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
+
210  amrex::Real TKEeps = 0.05 * maxtke;
+
211  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
+
212 
+
213  if ((tke1 <= TKEeps) && (tke > TKEeps))
+
214  {
+
215  // Interpolate to get lowest height where TKE -> 0
+
216  pblh_tke_arr(i,j,0) = (k+0.5)*dz_no_terrain
+
217  + dz_no_terrain/(tke1-tke) * (TKEeps - tke);
+
218  }
+
219  }
+
220  });
+
221  }
+
222  }// MFIter
+
223 
+
224  //
+
225  // Calculate hybrid PBL height
+
226  //
+
227  for (amrex::MFIter mfi(*pblh); mfi.isValid(); ++mfi)
+
228  {
+
229  const auto cons_arr = cons.const_array(mfi);
+
230  auto pblh_tke_arr = pblh_tke.array(mfi);
+
231  auto pblh_arr = pblh->array(mfi);
+
232 
+
233  amrex::Box gtbx = mfi.growntilebox();
+
234  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
+
235  {
+
236  //
+
237  // Clip PBLH_TKE to more realistic values
+
238  //
+
239  // Note from WRF MYNN-EDMF: TKE-based PBLH can be very large in cells
+
240  // with convective precipiation (> 8km!), so an artificial limit is
+
241  // imposed to not let PBLH_TKE exceed the theta_v-based PBL height
+
242  // +/- 350 m. This has no impact on 98-99% of the domain, but is the
+
243  // simplest patch that adequately addresses these extremely large
+
244  // PBLHs.
+
245  amrex::Real zi = pblh_arr(i,j,0);
+
246  pblh_tke_arr(i,j,0) = amrex::max(
+
247  amrex::min(pblh_tke_arr(i,j,0), zi+350.),
+
248  amrex::max(zi-350., 10.));
+
249 
+
250  //
+
251  // Finally, blend between the two PBLH estimates
+
252  //
+
253  amrex::Real maxqke = 2.0 * cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
+
254  if (maxqke > 0.05) {
+
255  amrex::Real wt = 0.5*std::tanh((zi - sbl_lim)/sbl_damp) + 0.5;
+
256  pblh_arr(i,j,0) = (1.-wt)*pblh_tke_arr(i,j,0) + wt*pblh_arr(i,j,0);
+
257  }
+
258  });
+
259  }//MFIter
+
260  }
+
261 
+
262  static constexpr amrex::Real thetamin_height = 200.0; // [m] height below which min thetav is determined
+
263  static constexpr amrex::Real theta_incr_land = 1.25; // [K] theta increase that determines the height of the capping inversion over land
+
264  static constexpr amrex::Real theta_incr_water = 1.0; // [K] theta increase that determines the height of the capping inversion over water
+
265  static constexpr amrex::Real sbl_lim = 200.0; // [m] upper limit of the stable BL height
+
266  static constexpr amrex::Real sbl_damp = 400.0; // [m] transition length for blending
+
267 };
+
268 #endif
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoKE_comp
#define RhoKE_comp
Definition: ERF_IndexDefines.H:38
ERF_Thetav.H
-
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
+
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
ERF_TileNoZ.H
TileNoZ
AMREX_FORCE_INLINE amrex::IntVect TileNoZ()
Definition: ERF_TileNoZ.H:11
Vars::cons
@ cons
Definition: ERF_IndexDefines.H:129
MYNNPBLH
Definition: ERF_PBLHeight.H:8
-
MYNNPBLH::sbl_lim
static constexpr amrex::Real sbl_lim
Definition: ERF_PBLHeight.H:264
-
MYNNPBLH::theta_incr_land
static constexpr amrex::Real theta_incr_land
Definition: ERF_PBLHeight.H:262
-
MYNNPBLH::compute_pblh
AMREX_GPU_HOST AMREX_FORCE_INLINE void compute_pblh(const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQr_comp) const
Definition: ERF_PBLHeight.H:22
-
MYNNPBLH::thetamin_height
static constexpr amrex::Real thetamin_height
Definition: ERF_PBLHeight.H:261
-
MYNNPBLH::theta_incr_water
static constexpr amrex::Real theta_incr_water
Definition: ERF_PBLHeight.H:263
-
MYNNPBLH::sbl_damp
static constexpr amrex::Real sbl_damp
Definition: ERF_PBLHeight.H:265
+
MYNNPBLH::sbl_lim
static constexpr amrex::Real sbl_lim
Definition: ERF_PBLHeight.H:265
+
MYNNPBLH::theta_incr_land
static constexpr amrex::Real theta_incr_land
Definition: ERF_PBLHeight.H:263
+
MYNNPBLH::compute_pblh
AMREX_GPU_HOST AMREX_FORCE_INLINE void compute_pblh(const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp) const
Definition: ERF_PBLHeight.H:22
+
MYNNPBLH::thetamin_height
static constexpr amrex::Real thetamin_height
Definition: ERF_PBLHeight.H:262
+
MYNNPBLH::theta_incr_water
static constexpr amrex::Real theta_incr_water
Definition: ERF_PBLHeight.H:264
+
MYNNPBLH::sbl_damp
static constexpr amrex::Real sbl_damp
Definition: ERF_PBLHeight.H:266
diff --git a/ERF__PBLModels_8H.html b/ERF__PBLModels_8H.html index 62b33877ba..86b957caa1 100644 --- a/ERF__PBLModels_8H.html +++ b/ERF__PBLModels_8H.html @@ -116,18 +116,18 @@ - - + + - - - - + + + +

Functions

void ComputeDiffusivityMYNN25 (const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQr_comp)
 
void ComputeDiffusivityMYNN25 (const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
 
void ComputeDiffusivityYSU (const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd)
 
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL (int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQr_comp, const bool use_most=true)
 
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms (int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
 
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL (int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)
 
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms (int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
 

Function Documentation

- -

◆ ComputeDiffusivityMYNN25()

+ +

◆ ComputeDiffusivityMYNN25()

@@ -210,6 +210,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -350,8 +356,8 @@

-

◆ ComputeQKESourceTerms()

+ +

◆ ComputeQKESourceTerms()

@@ -434,6 +440,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -510,51 +522,51 @@

177 {
-
178  // Compute some relevant derivatives
-
179  amrex::Real dthetadz, dudz, dvdz;
-
180  amrex::Real source_term = 0.0;
-
181 
-
182  amrex::Real dz_inv = cellSizeInv[2];
-
183  int izmin = domain.smallEnd(2);
-
184  int izmax = domain.bigEnd(2);
+
181 {
+
182  // Compute some relevant derivatives
+
183  amrex::Real dthetadz, dudz, dvdz;
+
184  amrex::Real source_term = 0.0;
185 
-
186  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
-
187  // so that the non-explicit pathway works. Therefore, at this
-
188  // point we DO have valid ghost cells from MOST. We are passing
-
189  // the MOST flag to use one-sided diffs here to be consistent with
-
190  // the explicit pathway.
-
191 
-
192  ComputeVerticalDerivativesPBL(i, j, k,
-
193  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
-
194  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
195  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
196  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
197  dthetadz, dudz, dvdz,
-
198  RhoQv_comp, RhoQr_comp, use_most);
-
199 
-
200  // Note: Transport terms due to turbulence and pressure are included when
-
201  // DiffusionSrcForState_* is called from ERF_slow_rhs_post.
-
202 
-
203  // Shear Production
-
204  source_term += K_turb(i,j,k,EddyDiff::Mom_v) * (dudz*dudz + dvdz*dvdz);
-
205 
-
206  // Buoyancy Production
-
207  source_term -= (CONST_GRAV/theta_mean)*K_turb(i,j,k,EddyDiff::Theta_v)*dthetadz;
-
208 
-
209  // Dissipation
-
210  amrex::Real qke = 2.0 * cell_prim(i,j,k,PrimKE_comp);
-
211  if (std::abs(qke) > 0.0) {
-
212  source_term -= cell_data(i,j,k,Rho_comp) * std::pow(qke,1.5) /
-
213  (pbl_mynn_B1_l * K_turb(i,j,k,EddyDiff::Turb_lengthscale));
-
214  }
-
215 
-
216  return source_term;
-
217 }
+
186  amrex::Real dz_inv = cellSizeInv[2];
+
187  int izmin = domain.smallEnd(2);
+
188  int izmax = domain.bigEnd(2);
+
189 
+
190  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
+
191  // so that the non-explicit pathway works. Therefore, at this
+
192  // point we DO have valid ghost cells from MOST. We are passing
+
193  // the MOST flag to use one-sided diffs here to be consistent with
+
194  // the explicit pathway.
+
195 
+
196  ComputeVerticalDerivativesPBL(i, j, k,
+
197  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
+
198  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
199  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
200  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
201  dthetadz, dudz, dvdz,
+
202  RhoQv_comp, RhoQc_comp, RhoQr_comp, use_most);
+
203 
+
204  // Note: Transport terms due to turbulence and pressure are included when
+
205  // DiffusionSrcForState_* is called from ERF_slow_rhs_post.
+
206 
+
207  // Shear Production
+
208  source_term += K_turb(i,j,k,EddyDiff::Mom_v) * (dudz*dudz + dvdz*dvdz);
+
209 
+
210  // Buoyancy Production
+
211  source_term -= (CONST_GRAV/theta_mean)*K_turb(i,j,k,EddyDiff::Theta_v)*dthetadz;
+
212 
+
213  // Dissipation
+
214  amrex::Real qke = 2.0 * cell_prim(i,j,k,PrimKE_comp);
+
215  if (std::abs(qke) > 0.0) {
+
216  source_term -= cell_data(i,j,k,Rho_comp) * std::pow(qke,1.5) /
+
217  (pbl_mynn_B1_l * K_turb(i,j,k,EddyDiff::Turb_lengthscale));
+
218  }
+
219 
+
220  return source_term;
+
221 }
CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:21
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
PrimKE_comp
#define PrimKE_comp
Definition: ERF_IndexDefines.H:51
-
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:80
+
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:82
EddyDiff::Theta_v
@ Theta_v
Definition: ERF_IndexDefines.H:157
EddyDiff::Turb_lengthscale
@ Turb_lengthscale
Definition: ERF_IndexDefines.H:161
EddyDiff::Mom_v
@ Mom_v
Definition: ERF_IndexDefines.H:156
@@ -563,18 +575,18 @@

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- +
+ @@ -583,8 +595,8 @@

-

◆ ComputeVerticalDerivativesPBL()

+ +

◆ ComputeVerticalDerivativesPBL()

@@ -703,6 +715,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -731,68 +749,68 @@

99 {
-
100  if ( k==izmax && c_ext_dir_on_zhi ) {
-
101  dthetadz = (1.0/3.0)*( -Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp)
-
102  - 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp)
-
103  + 4.0 * Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
104  } else if ( k==izmin && c_ext_dir_on_zlo ) {
-
105  dthetadz = (1.0/3.0)*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
106  + 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp)
-
107  - 4.0 * Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
108  } else if ( k==izmin && use_most ) {
-
109  dthetadz = ( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
110  - Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
111  } else {
-
112  dthetadz = 0.5*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
113  - Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
114  }
-
115 
-
116  if ( k==izmax && u_ext_dir_on_zhi ) {
-
117  dudz = (1.0/6.0)*( (-uvel(i ,j,k-1) - 3.0 * uvel(i ,j,k ) + 4.0 * uvel(i ,j,k+1))
-
118  + (-uvel(i+1,j,k-1) - 3.0 * uvel(i+1,j,k ) + 4.0 * uvel(i+1,j,k+1)) )*dz_inv;
-
119  } else if ( k==izmin && u_ext_dir_on_zlo ) {
-
120  dudz = (1.0/6.0)*( (uvel(i ,j,k+1) + 3.0 * uvel(i ,j,k ) - 4.0 * uvel(i ,j,k-1))
-
121  + (uvel(i+1,j,k+1) + 3.0 * uvel(i+1,j,k ) - 4.0 * uvel(i+1,j,k-1)) )*dz_inv;
-
122  } else if ( k==izmin && use_most ) {
-
123  dudz = 0.50*( uvel(i,j,k+1) - uvel(i,j,k ) + uvel(i+1,j,k+1) - uvel(i+1,j,k ) )*dz_inv;
-
124  } else {
-
125  dudz = 0.25*( uvel(i,j,k+1) - uvel(i,j,k-1) + uvel(i+1,j,k+1) - uvel(i+1,j,k-1) )*dz_inv;
-
126  }
-
127 
-
128  if ( k==izmax && v_ext_dir_on_zhi ) {
-
129  dvdz = (1.0/6.0)*( (-vvel(i,j ,k-1) - 3.0 * vvel(i,j ,k ) + 4.0 * vvel(i,j ,k+1))
-
130  + (-vvel(i,j+1,k-1) - 3.0 * vvel(i,j+1,k ) + 4.0 * vvel(i,j+1,k+1)) )*dz_inv;
-
131  } else if ( k==izmin && v_ext_dir_on_zlo ) {
-
132  dvdz = (1.0/6.0)*( (vvel(i,j ,k+1) + 3.0 * vvel(i,j ,k ) - 4.0 * vvel(i,j ,k-1))
-
133  + (vvel(i,j+1,k+1) + 3.0 * vvel(i,j+1,k ) - 4.0 * vvel(i,j+1,k-1)) )*dz_inv;
-
134  } else if ( k==izmin && use_most ) {
-
135  dvdz = 0.50*( vvel(i,j,k+1) - vvel(i,j,k ) + vvel(i,j+1,k+1) - vvel(i,j+1,k ) )*dz_inv;
-
136  } else {
-
137  dvdz = 0.25*( vvel(i,j,k+1) - vvel(i,j,k-1) + vvel(i,j+1,k+1) - vvel(i,j+1,k-1) )*dz_inv;
-
138  }
-
139 }
-
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
+
102 {
+
103  if ( k==izmax && c_ext_dir_on_zhi ) {
+
104  dthetadz = (1.0/3.0)*( -Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
105  - 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
106  + 4.0 * Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
107  } else if ( k==izmin && c_ext_dir_on_zlo ) {
+
108  dthetadz = (1.0/3.0)*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
109  + 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
110  - 4.0 * Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
111  } else if ( k==izmin && use_most ) {
+
112  dthetadz = ( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
113  - Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
114  } else {
+
115  dthetadz = 0.5*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
116  - Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
117  }
+
118 
+
119  if ( k==izmax && u_ext_dir_on_zhi ) {
+
120  dudz = (1.0/6.0)*( (-uvel(i ,j,k-1) - 3.0 * uvel(i ,j,k ) + 4.0 * uvel(i ,j,k+1))
+
121  + (-uvel(i+1,j,k-1) - 3.0 * uvel(i+1,j,k ) + 4.0 * uvel(i+1,j,k+1)) )*dz_inv;
+
122  } else if ( k==izmin && u_ext_dir_on_zlo ) {
+
123  dudz = (1.0/6.0)*( (uvel(i ,j,k+1) + 3.0 * uvel(i ,j,k ) - 4.0 * uvel(i ,j,k-1))
+
124  + (uvel(i+1,j,k+1) + 3.0 * uvel(i+1,j,k ) - 4.0 * uvel(i+1,j,k-1)) )*dz_inv;
+
125  } else if ( k==izmin && use_most ) {
+
126  dudz = 0.50*( uvel(i,j,k+1) - uvel(i,j,k ) + uvel(i+1,j,k+1) - uvel(i+1,j,k ) )*dz_inv;
+
127  } else {
+
128  dudz = 0.25*( uvel(i,j,k+1) - uvel(i,j,k-1) + uvel(i+1,j,k+1) - uvel(i+1,j,k-1) )*dz_inv;
+
129  }
+
130 
+
131  if ( k==izmax && v_ext_dir_on_zhi ) {
+
132  dvdz = (1.0/6.0)*( (-vvel(i,j ,k-1) - 3.0 * vvel(i,j ,k ) + 4.0 * vvel(i,j ,k+1))
+
133  + (-vvel(i,j+1,k-1) - 3.0 * vvel(i,j+1,k ) + 4.0 * vvel(i,j+1,k+1)) )*dz_inv;
+
134  } else if ( k==izmin && v_ext_dir_on_zlo ) {
+
135  dvdz = (1.0/6.0)*( (vvel(i,j ,k+1) + 3.0 * vvel(i,j ,k ) - 4.0 * vvel(i,j ,k-1))
+
136  + (vvel(i,j+1,k+1) + 3.0 * vvel(i,j+1,k ) - 4.0 * vvel(i,j+1,k-1)) )*dz_inv;
+
137  } else if ( k==izmin && use_most ) {
+
138  dvdz = 0.50*( vvel(i,j,k+1) - vvel(i,j,k ) + vvel(i,j+1,k+1) - vvel(i,j+1,k ) )*dz_inv;
+
139  } else {
+
140  dvdz = 0.25*( vvel(i,j,k+1) - vvel(i,j,k-1) + vvel(i,j+1,k+1) - vvel(i,j+1,k-1) )*dz_inv;
+
141  }
+
142 }
+
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
-

Referenced by ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), and ComputeQKESourceTerms().

+

Referenced by ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), and ComputeQKESourceTerms().

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+ - + - + diff --git a/ERF__PBLModels_8H.js b/ERF__PBLModels_8H.js index 91ae69894b..bafab17ad8 100644 --- a/ERF__PBLModels_8H.js +++ b/ERF__PBLModels_8H.js @@ -1,7 +1,7 @@ var ERF__PBLModels_8H = [ - [ "ComputeDiffusivityMYNN25", "ERF__PBLModels_8H.html#af2bea8fffff60778a8e48189b4406a03", null ], + [ "ComputeDiffusivityMYNN25", "ERF__PBLModels_8H.html#aee11be8e39b591f52c42b82f6bf2aaea", null ], [ "ComputeDiffusivityYSU", "ERF__PBLModels_8H.html#ace7a2f37421af958b8f63b049b7c0835", null ], - [ "ComputeQKESourceTerms", "ERF__PBLModels_8H.html#aeebffefd91e8d17e6af632b6076ce455", null ], - [ "ComputeVerticalDerivativesPBL", "ERF__PBLModels_8H.html#a33bb37a040bfadb1956539905ef016c3", null ] + [ "ComputeQKESourceTerms", "ERF__PBLModels_8H.html#a3cbd00ebb80bad6442be17509b800240", null ], + [ "ComputeVerticalDerivativesPBL", "ERF__PBLModels_8H.html#acb354f0d34a376d6c1769d0a3b1521d5", null ] ]; \ No newline at end of file diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.md5 b/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.md5 deleted file mode 100644 index bef4d7eb33..0000000000 --- a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -97adc7f4003d460ea941a7b92ce7c576 \ No newline at end of file diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.md5 b/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.md5 deleted file mode 100644 index 6b8e425377..0000000000 --- a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -a469b5fbb4abc66724dd33df5d044f30 \ No newline at end of file diff --git a/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.map b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.map new file mode 100644 index 0000000000..2b1414d320 --- /dev/null +++ b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.map @@ -0,0 +1,5 @@ + + + + + diff --git a/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.md5 b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.md5 new file mode 100644 index 0000000000..b888b4b287 --- /dev/null +++ b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.md5 @@ -0,0 +1 @@ +4d5dbc6de021ed7ec21ad7ccf6b34481 \ No newline at end of file diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.png b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.png similarity index 100% rename from ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.png rename to ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_cgraph.png diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.map b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.map similarity index 100% rename from ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.map rename to ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.map diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.md5 b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.md5 similarity index 100% rename from ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.md5 rename to ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.md5 diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.png b/ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.png similarity index 100% rename from ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_icgraph.png rename to ERF__PBLModels_8H_a3cbd00ebb80bad6442be17509b800240_icgraph.png diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.map b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.map similarity index 55% rename from ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.map rename to ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.map index 44b8cd8ddd..33c0a64d34 100644 --- a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.map +++ b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.map @@ -1,4 +1,4 @@ - + diff --git a/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.md5 b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.md5 new file mode 100644 index 0000000000..a48fefce18 --- /dev/null +++ b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.md5 @@ -0,0 +1 @@ +c8757da88bf8e10bd099e12b7bc4096b \ No newline at end of file diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.png b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.png similarity index 100% rename from ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_cgraph.png rename to ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_cgraph.png diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.map b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.map similarity index 83% rename from ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.map rename to ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.map index a76aed2b88..143f47b944 100644 --- a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.map +++ b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.map @@ -1,8 +1,8 @@ - + - + diff --git a/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.md5 b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.md5 new file mode 100644 index 0000000000..7d204d0529 --- /dev/null +++ b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.md5 @@ -0,0 +1 @@ +c8ce14b17e094bfa94364d1337e732c0 \ No newline at end of file diff --git a/ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.png b/ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.png similarity index 100% rename from ERF__PBLModels_8H_a33bb37a040bfadb1956539905ef016c3_icgraph.png rename to ERF__PBLModels_8H_acb354f0d34a376d6c1769d0a3b1521d5_icgraph.png diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.map b/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.map deleted file mode 100644 index 0371ce3c31..0000000000 --- a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.map +++ /dev/null @@ -1,5 +0,0 @@ - - - - - diff --git a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.md5 b/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.md5 deleted file mode 100644 index a9cb68bdd0..0000000000 --- a/ERF__PBLModels_8H_aeebffefd91e8d17e6af632b6076ce455_cgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -3c9990263e5e8909b238107901edaf44 \ No newline at end of file diff --git a/ERF__PBLModels_8H_source.html b/ERF__PBLModels_8H_source.html index 17401061f3..d5ff3259dd 100644 --- a/ERF__PBLModels_8H_source.html +++ b/ERF__PBLModels_8H_source.html @@ -109,7 +109,7 @@
21  * @param[in] z_phys_nd Physical location of grid nodes, if terrain (or grid stretching) is enabled
22  */
23 void
-
24 ComputeDiffusivityMYNN25 (const amrex::MultiFab& xvel,
+
24 ComputeDiffusivityMYNN25 (const amrex::MultiFab& xvel,
25  const amrex::MultiFab& yvel,
26  const amrex::MultiFab& cons_in,
27  amrex::MultiFab& eddyViscosity,
@@ -121,198 +121,202 @@
33  const amrex::BCRec* bc_ptr,
34  bool /*vert_only*/,
35  const std::unique_ptr<amrex::MultiFab>& z_phys_nd,
-
36  const int RhoQv_comp, const int RhoQr_comp);
-
37 
-
38 /**
-
39  * Compute eddy diffusivities of momentum (eddy viscosity) and heat using the
-
40  * Yonsei University PBL scheme
-
41  *
-
42  * @param[in] xvel Velocity in x-dir
-
43  * @param[in] yvel Velocity in y-dir
-
44  * @param[in] cons_in Cell center conserved quantities
-
45  * @param[out] eddyViscosity Holds turbulent viscosity
-
46  * @param[in] geom Problem geometry
-
47  * @param[in] turbChoice Container with turbulence parameters
-
48  * @param[in] most Pointer to Monin-Obukhov class if instantiated
-
49  * @param[in] use_moisture If we have microphysics enabled
-
50  * @param[in] level Current level
-
51  * @param[in] bc_ptr Pointer to array with boundary condition info
-
52  * @param[in] vert_only Only compute vertical eddy diffusivities
-
53  * @param[in] z_phys_nd Physical location of grid nodes, if terrain (or grid stretching) is enabled
-
54  */
-
55 void
-
56 ComputeDiffusivityYSU (const amrex::MultiFab& xvel,
-
57  const amrex::MultiFab& yvel,
-
58  const amrex::MultiFab& cons_in,
-
59  amrex::MultiFab& eddyViscosity,
-
60  const amrex::Geometry& geom,
-
61  const TurbChoice& turbChoice,
-
62  std::unique_ptr<ABLMost>& most,
-
63  bool use_moisture,
-
64  int level,
-
65  const amrex::BCRec* bc_ptr,
-
66  bool /*vert_only*/,
-
67  const std::unique_ptr<amrex::MultiFab>& z_phys_nd);
-
68 
-
69 
-
70 /**
-
71  * Function for computing vertical derivatives for use in PBL model
-
72  *
-
73  * @param[in] u velocity in x-dir
-
74  * @param[in] v velocity in y-dir
-
75  * @param[in] cell_data conserved cell center vars
-
76  */
-
77 AMREX_GPU_DEVICE
-
78 AMREX_FORCE_INLINE
-
79 void
-
80 ComputeVerticalDerivativesPBL (int i, int j, int k,
-
81  const amrex::Array4<const amrex::Real>& uvel,
-
82  const amrex::Array4<const amrex::Real>& vvel,
-
83  const amrex::Array4<const amrex::Real>& cell_data,
-
84  const int izmin,
-
85  const int izmax,
-
86  const amrex::Real& dz_inv,
-
87  const bool c_ext_dir_on_zlo,
-
88  const bool c_ext_dir_on_zhi,
-
89  const bool u_ext_dir_on_zlo,
-
90  const bool u_ext_dir_on_zhi,
-
91  const bool v_ext_dir_on_zlo,
-
92  const bool v_ext_dir_on_zhi,
-
93  amrex::Real& dthetadz,
-
94  amrex::Real& dudz,
-
95  amrex::Real& dvdz,
-
96  const int RhoQv_comp,
-
97  const int RhoQr_comp,
-
98  const bool use_most=true)
-
99 {
-
100  if ( k==izmax && c_ext_dir_on_zhi ) {
-
101  dthetadz = (1.0/3.0)*( -Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp)
-
102  - 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp)
-
103  + 4.0 * Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
104  } else if ( k==izmin && c_ext_dir_on_zlo ) {
-
105  dthetadz = (1.0/3.0)*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
106  + 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp)
-
107  - 4.0 * Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
108  } else if ( k==izmin && use_most ) {
-
109  dthetadz = ( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
110  - Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
111  } else {
-
112  dthetadz = 0.5*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQr_comp)
-
113  - Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQr_comp) )*dz_inv;
-
114  }
-
115 
-
116  if ( k==izmax && u_ext_dir_on_zhi ) {
-
117  dudz = (1.0/6.0)*( (-uvel(i ,j,k-1) - 3.0 * uvel(i ,j,k ) + 4.0 * uvel(i ,j,k+1))
-
118  + (-uvel(i+1,j,k-1) - 3.0 * uvel(i+1,j,k ) + 4.0 * uvel(i+1,j,k+1)) )*dz_inv;
-
119  } else if ( k==izmin && u_ext_dir_on_zlo ) {
-
120  dudz = (1.0/6.0)*( (uvel(i ,j,k+1) + 3.0 * uvel(i ,j,k ) - 4.0 * uvel(i ,j,k-1))
-
121  + (uvel(i+1,j,k+1) + 3.0 * uvel(i+1,j,k ) - 4.0 * uvel(i+1,j,k-1)) )*dz_inv;
-
122  } else if ( k==izmin && use_most ) {
-
123  dudz = 0.50*( uvel(i,j,k+1) - uvel(i,j,k ) + uvel(i+1,j,k+1) - uvel(i+1,j,k ) )*dz_inv;
-
124  } else {
-
125  dudz = 0.25*( uvel(i,j,k+1) - uvel(i,j,k-1) + uvel(i+1,j,k+1) - uvel(i+1,j,k-1) )*dz_inv;
-
126  }
-
127 
-
128  if ( k==izmax && v_ext_dir_on_zhi ) {
-
129  dvdz = (1.0/6.0)*( (-vvel(i,j ,k-1) - 3.0 * vvel(i,j ,k ) + 4.0 * vvel(i,j ,k+1))
-
130  + (-vvel(i,j+1,k-1) - 3.0 * vvel(i,j+1,k ) + 4.0 * vvel(i,j+1,k+1)) )*dz_inv;
-
131  } else if ( k==izmin && v_ext_dir_on_zlo ) {
-
132  dvdz = (1.0/6.0)*( (vvel(i,j ,k+1) + 3.0 * vvel(i,j ,k ) - 4.0 * vvel(i,j ,k-1))
-
133  + (vvel(i,j+1,k+1) + 3.0 * vvel(i,j+1,k ) - 4.0 * vvel(i,j+1,k-1)) )*dz_inv;
-
134  } else if ( k==izmin && use_most ) {
-
135  dvdz = 0.50*( vvel(i,j,k+1) - vvel(i,j,k ) + vvel(i,j+1,k+1) - vvel(i,j+1,k ) )*dz_inv;
-
136  } else {
-
137  dvdz = 0.25*( vvel(i,j,k+1) - vvel(i,j,k-1) + vvel(i,j+1,k+1) - vvel(i,j+1,k-1) )*dz_inv;
-
138  }
-
139 }
-
140 
-
141 /**
-
142  * Function for computing the QKE source terms (NN09, Eqn. 5).
-
143  *
-
144  * @param[in] u velocity in x-dir
-
145  * @param[in] v velocity in y-dir
-
146  * @param[in] cell_data conserved cell center vars
-
147  * @param[in] cell_prim primitive cell center vars
-
148  * @param[in] K_turb turbulent viscosity
-
149  * @param[in] cellSizeInv inverse cell size array
-
150  * @param[in] domain box of the whole domain
-
151  * @param[in] pbl_mynn_B1_l a parameter
-
152  * @param[in] theta_mean average theta
-
153  */
-
154 AMREX_GPU_DEVICE
-
155 AMREX_FORCE_INLINE
-
156 amrex::Real
-
157 ComputeQKESourceTerms (int i, int j, int k,
-
158  const amrex::Array4<const amrex::Real>& uvel,
-
159  const amrex::Array4<const amrex::Real>& vvel,
-
160  const amrex::Array4<const amrex::Real>& cell_data,
-
161  const amrex::Array4<const amrex::Real>& cell_prim,
-
162  const amrex::Array4<const amrex::Real>& K_turb,
-
163  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& cellSizeInv,
-
164  const amrex::Box& domain,
-
165  amrex::Real pbl_mynn_B1_l,
-
166  const amrex::Real theta_mean,
-
167  const int RhoQv_comp,
-
168  const int RhoQr_comp,
-
169  bool c_ext_dir_on_zlo,
-
170  bool c_ext_dir_on_zhi,
-
171  bool u_ext_dir_on_zlo,
-
172  bool u_ext_dir_on_zhi,
-
173  bool v_ext_dir_on_zlo,
-
174  bool v_ext_dir_on_zhi,
-
175  const bool use_most=false,
-
176  const amrex::Real met_h_zeta=1.0)
-
177 {
-
178  // Compute some relevant derivatives
-
179  amrex::Real dthetadz, dudz, dvdz;
-
180  amrex::Real source_term = 0.0;
-
181 
-
182  amrex::Real dz_inv = cellSizeInv[2];
-
183  int izmin = domain.smallEnd(2);
-
184  int izmax = domain.bigEnd(2);
+
36  const int RhoQv_comp,
+
37  const int RhoQc_comp,
+
38  const int RhoQr_comp);
+
39 
+
40 /**
+
41  * Compute eddy diffusivities of momentum (eddy viscosity) and heat using the
+
42  * Yonsei University PBL scheme
+
43  *
+
44  * @param[in] xvel Velocity in x-dir
+
45  * @param[in] yvel Velocity in y-dir
+
46  * @param[in] cons_in Cell center conserved quantities
+
47  * @param[out] eddyViscosity Holds turbulent viscosity
+
48  * @param[in] geom Problem geometry
+
49  * @param[in] turbChoice Container with turbulence parameters
+
50  * @param[in] most Pointer to Monin-Obukhov class if instantiated
+
51  * @param[in] use_moisture If we have microphysics enabled
+
52  * @param[in] level Current level
+
53  * @param[in] bc_ptr Pointer to array with boundary condition info
+
54  * @param[in] vert_only Only compute vertical eddy diffusivities
+
55  * @param[in] z_phys_nd Physical location of grid nodes, if terrain (or grid stretching) is enabled
+
56  */
+
57 void
+
58 ComputeDiffusivityYSU (const amrex::MultiFab& xvel,
+
59  const amrex::MultiFab& yvel,
+
60  const amrex::MultiFab& cons_in,
+
61  amrex::MultiFab& eddyViscosity,
+
62  const amrex::Geometry& geom,
+
63  const TurbChoice& turbChoice,
+
64  std::unique_ptr<ABLMost>& most,
+
65  bool use_moisture,
+
66  int level,
+
67  const amrex::BCRec* bc_ptr,
+
68  bool /*vert_only*/,
+
69  const std::unique_ptr<amrex::MultiFab>& z_phys_nd);
+
70 
+
71 
+
72 /**
+
73  * Function for computing vertical derivatives for use in PBL model
+
74  *
+
75  * @param[in] u velocity in x-dir
+
76  * @param[in] v velocity in y-dir
+
77  * @param[in] cell_data conserved cell center vars
+
78  */
+
79 AMREX_GPU_DEVICE
+
80 AMREX_FORCE_INLINE
+
81 void
+
82 ComputeVerticalDerivativesPBL (int i, int j, int k,
+
83  const amrex::Array4<const amrex::Real>& uvel,
+
84  const amrex::Array4<const amrex::Real>& vvel,
+
85  const amrex::Array4<const amrex::Real>& cell_data,
+
86  const int izmin,
+
87  const int izmax,
+
88  const amrex::Real& dz_inv,
+
89  const bool c_ext_dir_on_zlo,
+
90  const bool c_ext_dir_on_zhi,
+
91  const bool u_ext_dir_on_zlo,
+
92  const bool u_ext_dir_on_zhi,
+
93  const bool v_ext_dir_on_zlo,
+
94  const bool v_ext_dir_on_zhi,
+
95  amrex::Real& dthetadz,
+
96  amrex::Real& dudz,
+
97  amrex::Real& dvdz,
+
98  const int RhoQv_comp,
+
99  const int RhoQc_comp,
+
100  const int RhoQr_comp,
+
101  const bool use_most=true)
+
102 {
+
103  if ( k==izmax && c_ext_dir_on_zhi ) {
+
104  dthetadz = (1.0/3.0)*( -Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
105  - 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
106  + 4.0 * Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
107  } else if ( k==izmin && c_ext_dir_on_zlo ) {
+
108  dthetadz = (1.0/3.0)*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
109  + 3.0 * Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
110  - 4.0 * Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
111  } else if ( k==izmin && use_most ) {
+
112  dthetadz = ( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
113  - Thetav(i,j,k ,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
114  } else {
+
115  dthetadz = 0.5*( Thetav(i,j,k+1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp)
+
116  - Thetav(i,j,k-1,cell_data,RhoQv_comp,RhoQc_comp,RhoQr_comp) )*dz_inv;
+
117  }
+
118 
+
119  if ( k==izmax && u_ext_dir_on_zhi ) {
+
120  dudz = (1.0/6.0)*( (-uvel(i ,j,k-1) - 3.0 * uvel(i ,j,k ) + 4.0 * uvel(i ,j,k+1))
+
121  + (-uvel(i+1,j,k-1) - 3.0 * uvel(i+1,j,k ) + 4.0 * uvel(i+1,j,k+1)) )*dz_inv;
+
122  } else if ( k==izmin && u_ext_dir_on_zlo ) {
+
123  dudz = (1.0/6.0)*( (uvel(i ,j,k+1) + 3.0 * uvel(i ,j,k ) - 4.0 * uvel(i ,j,k-1))
+
124  + (uvel(i+1,j,k+1) + 3.0 * uvel(i+1,j,k ) - 4.0 * uvel(i+1,j,k-1)) )*dz_inv;
+
125  } else if ( k==izmin && use_most ) {
+
126  dudz = 0.50*( uvel(i,j,k+1) - uvel(i,j,k ) + uvel(i+1,j,k+1) - uvel(i+1,j,k ) )*dz_inv;
+
127  } else {
+
128  dudz = 0.25*( uvel(i,j,k+1) - uvel(i,j,k-1) + uvel(i+1,j,k+1) - uvel(i+1,j,k-1) )*dz_inv;
+
129  }
+
130 
+
131  if ( k==izmax && v_ext_dir_on_zhi ) {
+
132  dvdz = (1.0/6.0)*( (-vvel(i,j ,k-1) - 3.0 * vvel(i,j ,k ) + 4.0 * vvel(i,j ,k+1))
+
133  + (-vvel(i,j+1,k-1) - 3.0 * vvel(i,j+1,k ) + 4.0 * vvel(i,j+1,k+1)) )*dz_inv;
+
134  } else if ( k==izmin && v_ext_dir_on_zlo ) {
+
135  dvdz = (1.0/6.0)*( (vvel(i,j ,k+1) + 3.0 * vvel(i,j ,k ) - 4.0 * vvel(i,j ,k-1))
+
136  + (vvel(i,j+1,k+1) + 3.0 * vvel(i,j+1,k ) - 4.0 * vvel(i,j+1,k-1)) )*dz_inv;
+
137  } else if ( k==izmin && use_most ) {
+
138  dvdz = 0.50*( vvel(i,j,k+1) - vvel(i,j,k ) + vvel(i,j+1,k+1) - vvel(i,j+1,k ) )*dz_inv;
+
139  } else {
+
140  dvdz = 0.25*( vvel(i,j,k+1) - vvel(i,j,k-1) + vvel(i,j+1,k+1) - vvel(i,j+1,k-1) )*dz_inv;
+
141  }
+
142 }
+
143 
+
144 /**
+
145  * Function for computing the QKE source terms (NN09, Eqn. 5).
+
146  *
+
147  * @param[in] u velocity in x-dir
+
148  * @param[in] v velocity in y-dir
+
149  * @param[in] cell_data conserved cell center vars
+
150  * @param[in] cell_prim primitive cell center vars
+
151  * @param[in] K_turb turbulent viscosity
+
152  * @param[in] cellSizeInv inverse cell size array
+
153  * @param[in] domain box of the whole domain
+
154  * @param[in] pbl_mynn_B1_l a parameter
+
155  * @param[in] theta_mean average theta
+
156  */
+
157 AMREX_GPU_DEVICE
+
158 AMREX_FORCE_INLINE
+
159 amrex::Real
+
160 ComputeQKESourceTerms (int i, int j, int k,
+
161  const amrex::Array4<const amrex::Real>& uvel,
+
162  const amrex::Array4<const amrex::Real>& vvel,
+
163  const amrex::Array4<const amrex::Real>& cell_data,
+
164  const amrex::Array4<const amrex::Real>& cell_prim,
+
165  const amrex::Array4<const amrex::Real>& K_turb,
+
166  const amrex::GpuArray<amrex::Real, AMREX_SPACEDIM>& cellSizeInv,
+
167  const amrex::Box& domain,
+
168  amrex::Real pbl_mynn_B1_l,
+
169  const amrex::Real theta_mean,
+
170  const int RhoQv_comp,
+
171  const int RhoQc_comp,
+
172  const int RhoQr_comp,
+
173  bool c_ext_dir_on_zlo,
+
174  bool c_ext_dir_on_zhi,
+
175  bool u_ext_dir_on_zlo,
+
176  bool u_ext_dir_on_zhi,
+
177  bool v_ext_dir_on_zlo,
+
178  bool v_ext_dir_on_zhi,
+
179  const bool use_most=false,
+
180  const amrex::Real met_h_zeta=1.0)
+
181 {
+
182  // Compute some relevant derivatives
+
183  amrex::Real dthetadz, dudz, dvdz;
+
184  amrex::Real source_term = 0.0;
185 
-
186  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
-
187  // so that the non-explicit pathway works. Therefore, at this
-
188  // point we DO have valid ghost cells from MOST. We are passing
-
189  // the MOST flag to use one-sided diffs here to be consistent with
-
190  // the explicit pathway.
-
191 
-
192  ComputeVerticalDerivativesPBL(i, j, k,
-
193  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
-
194  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
-
195  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
-
196  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
-
197  dthetadz, dudz, dvdz,
-
198  RhoQv_comp, RhoQr_comp, use_most);
-
199 
-
200  // Note: Transport terms due to turbulence and pressure are included when
-
201  // DiffusionSrcForState_* is called from ERF_slow_rhs_post.
-
202 
-
203  // Shear Production
-
204  source_term += K_turb(i,j,k,EddyDiff::Mom_v) * (dudz*dudz + dvdz*dvdz);
-
205 
-
206  // Buoyancy Production
-
207  source_term -= (CONST_GRAV/theta_mean)*K_turb(i,j,k,EddyDiff::Theta_v)*dthetadz;
-
208 
-
209  // Dissipation
-
210  amrex::Real qke = 2.0 * cell_prim(i,j,k,PrimKE_comp);
-
211  if (std::abs(qke) > 0.0) {
-
212  source_term -= cell_data(i,j,k,Rho_comp) * std::pow(qke,1.5) /
-
213  (pbl_mynn_B1_l * K_turb(i,j,k,EddyDiff::Turb_lengthscale));
-
214  }
-
215 
-
216  return source_term;
-
217 }
-
218 #endif
+
186  amrex::Real dz_inv = cellSizeInv[2];
+
187  int izmin = domain.smallEnd(2);
+
188  int izmax = domain.bigEnd(2);
+
189 
+
190  // NOTE: With MOST, the ghost cells are filled AFTER k_turb is computed
+
191  // so that the non-explicit pathway works. Therefore, at this
+
192  // point we DO have valid ghost cells from MOST. We are passing
+
193  // the MOST flag to use one-sided diffs here to be consistent with
+
194  // the explicit pathway.
+
195 
+
196  ComputeVerticalDerivativesPBL(i, j, k,
+
197  uvel, vvel, cell_data, izmin, izmax, dz_inv/met_h_zeta,
+
198  c_ext_dir_on_zlo, c_ext_dir_on_zhi,
+
199  u_ext_dir_on_zlo, u_ext_dir_on_zhi,
+
200  v_ext_dir_on_zlo, v_ext_dir_on_zhi,
+
201  dthetadz, dudz, dvdz,
+
202  RhoQv_comp, RhoQc_comp, RhoQr_comp, use_most);
+
203 
+
204  // Note: Transport terms due to turbulence and pressure are included when
+
205  // DiffusionSrcForState_* is called from ERF_slow_rhs_post.
+
206 
+
207  // Shear Production
+
208  source_term += K_turb(i,j,k,EddyDiff::Mom_v) * (dudz*dudz + dvdz*dvdz);
+
209 
+
210  // Buoyancy Production
+
211  source_term -= (CONST_GRAV/theta_mean)*K_turb(i,j,k,EddyDiff::Theta_v)*dthetadz;
+
212 
+
213  // Dissipation
+
214  amrex::Real qke = 2.0 * cell_prim(i,j,k,PrimKE_comp);
+
215  if (std::abs(qke) > 0.0) {
+
216  source_term -= cell_data(i,j,k,Rho_comp) * std::pow(qke,1.5) /
+
217  (pbl_mynn_B1_l * K_turb(i,j,k,EddyDiff::Turb_lengthscale));
+
218  }
+
219 
+
220  return source_term;
+
221 }
+
222 #endif
CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:21
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
PrimKE_comp
#define PrimKE_comp
Definition: ERF_IndexDefines.H:51
-
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:80
+
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:160
+
ComputeVerticalDerivativesPBL
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void ComputeVerticalDerivativesPBL(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const int izmin, const int izmax, const amrex::Real &dz_inv, const bool c_ext_dir_on_zlo, const bool c_ext_dir_on_zhi, const bool u_ext_dir_on_zlo, const bool u_ext_dir_on_zhi, const bool v_ext_dir_on_zlo, const bool v_ext_dir_on_zhi, amrex::Real &dthetadz, amrex::Real &dudz, amrex::Real &dvdz, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp, const bool use_most=true)
Definition: ERF_PBLModels.H:82
ComputeDiffusivityYSU
void ComputeDiffusivityYSU(const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd)
-
ComputeQKESourceTerms
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real ComputeQKESourceTerms(int i, int j, int k, const amrex::Array4< const amrex::Real > &uvel, const amrex::Array4< const amrex::Real > &vvel, const amrex::Array4< const amrex::Real > &cell_data, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< const amrex::Real > &K_turb, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Box &domain, amrex::Real pbl_mynn_B1_l, const amrex::Real theta_mean, const int RhoQv_comp, const int RhoQr_comp, bool c_ext_dir_on_zlo, bool c_ext_dir_on_zhi, bool u_ext_dir_on_zlo, bool u_ext_dir_on_zhi, bool v_ext_dir_on_zlo, bool v_ext_dir_on_zhi, const bool use_most=false, const amrex::Real met_h_zeta=1.0)
Definition: ERF_PBLModels.H:157
-
ComputeDiffusivityMYNN25
void ComputeDiffusivityMYNN25(const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQr_comp)
+
ComputeDiffusivityMYNN25
void ComputeDiffusivityMYNN25(const amrex::MultiFab &xvel, const amrex::MultiFab &yvel, const amrex::MultiFab &cons_in, amrex::MultiFab &eddyViscosity, const amrex::Geometry &geom, const TurbChoice &turbChoice, std::unique_ptr< ABLMost > &most, bool use_moisture, int level, const amrex::BCRec *bc_ptr, bool, const std::unique_ptr< amrex::MultiFab > &z_phys_nd, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
ERF_Thetav.H
-
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
+
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
EddyDiff::Theta_v
@ Theta_v
Definition: ERF_IndexDefines.H:157
EddyDiff::Turb_lengthscale
@ Turb_lengthscale
Definition: ERF_IndexDefines.H:161
EddyDiff::Mom_v
@ Mom_v
Definition: ERF_IndexDefines.H:156
diff --git a/ERF__ProbCommon_8H_source.html b/ERF__ProbCommon_8H_source.html index 3484f945bc..aa19547523 100644 --- a/ERF__ProbCommon_8H_source.html +++ b/ERF__ProbCommon_8H_source.html @@ -611,7 +611,7 @@
ProbParmDefaults::T_0
amrex::Real T_0
Definition: ERF_ProbCommon.H:16
ProbParmDefaults::rho_0
amrex::Real rho_0
Definition: ERF_ProbCommon.H:15
SolverChoice
Definition: ERF_DataStruct.H:78
-
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:532
+
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:537

diff --git a/ERF__SAM_8H_source.html b/ERF__SAM_8H_source.html index 70785146cc..5ed0d74e4e 100644 --- a/ERF__SAM_8H_source.html +++ b/ERF__SAM_8H_source.html @@ -536,12 +536,12 @@
MicVar::qps
@ qps
Definition: ERF_SAM.H:43
MicVar::qp
@ qp
Definition: ERF_SAM.H:41
SolverChoice
Definition: ERF_DataStruct.H:78
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:578
-
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:577
-
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:637
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:636
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:583
+
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:582
+
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:642
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:641
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639

diff --git a/ERF__SlowRhsPost_8cpp.html b/ERF__SlowRhsPost_8cpp.html index 0efad6e863..f297ab60da 100644 --- a/ERF__SlowRhsPost_8cpp.html +++ b/ERF__SlowRhsPost_8cpp.html @@ -932,17 +932,17 @@

AdvChoice::dryscal_horiz_upw_frac
amrex::Real dryscal_horiz_upw_frac
Definition: ERF_AdvStruct.H:293

DiffChoice
Definition: ERF_DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
-
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:604
-
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:620
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:548
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:537
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:607
-
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:622
+
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:609
+
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:625
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:553
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:542
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:612
+
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:627
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
TurbChoice::use_KE
bool use_KE
Definition: ERF_TurbStruct.H:206
diff --git a/ERF__SlowRhsPre_8cpp.html b/ERF__SlowRhsPre_8cpp.html index 9e1c7db05b..2bd57fc105 100644 --- a/ERF__SlowRhsPre_8cpp.html +++ b/ERF__SlowRhsPre_8cpp.html @@ -1276,19 +1276,19 @@

AdvChoice::dycore_horiz_upw_frac
amrex::Real dycore_horiz_upw_frac
Definition: ERF_AdvStruct.H:291

DiffChoice
Definition: ERF_DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
-
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:604
-
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:620
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
-
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: ERF_DataStruct.H:629
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:548
-
SolverChoice::constant_density
int constant_density
Definition: ERF_DataStruct.H:550
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:537
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:607
-
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:622
+
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:609
+
SolverChoice::use_mono_adv
bool use_mono_adv
Definition: ERF_DataStruct.H:625
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
+
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: ERF_DataStruct.H:634
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:553
+
SolverChoice::constant_density
int constant_density
Definition: ERF_DataStruct.H:555
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:542
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:612
+
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:627
TurbChoice
Definition: ERF_TurbStruct.H:29
TurbChoice::pbl_type
PBLType pbl_type
Definition: ERF_TurbStruct.H:192
TurbChoice::les_type
LESType les_type
Definition: ERF_TurbStruct.H:169
diff --git a/ERF__TI__substep__fun_8H_source.html b/ERF__TI__substep__fun_8H_source.html index 13f16ec7fc..bbf52cd53a 100644 --- a/ERF__TI__substep__fun_8H_source.html +++ b/ERF__TI__substep__fun_8H_source.html @@ -290,7 +290,7 @@
IntVars::cons
@ cons
Definition: ERF_IndexDefines.H:139
IntVars::zmom
@ zmom
Definition: ERF_IndexDefines.H:142
IntVars::xmom
@ xmom
Definition: ERF_IndexDefines.H:140
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
diff --git a/ERF__TerrainMetrics_8H.html b/ERF__TerrainMetrics_8H.html index 33745ac959..f145fd5c59 100644 --- a/ERF__TerrainMetrics_8H.html +++ b/ERF__TerrainMetrics_8H.html @@ -1229,7 +1229,7 @@

47  return met_h_zeta;
48 }
-

Referenced by MOSTAverage::compute_region_averages(), ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), ComputeTurbulentViscosityLES(), and ERFPhysBCFunct_cons::impose_vertical_cons_bcs().

+

Referenced by MOSTAverage::compute_region_averages(), ComputeDiffusivityMYNN25(), ComputeDiffusivityYSU(), ComputeTurbulentViscosityLES(), and ERFPhysBCFunct_cons::impose_vertical_cons_bcs().

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@@ -1237,7 +1237,7 @@

- + @@ -1716,14 +1716,14 @@

365  return (z_cc - z0_cc);

366 }
-

Referenced by ComputeDiffusivityMYNN25(), and ComputeDiffusivityYSU().

+

Referenced by ComputeDiffusivityMYNN25(), and ComputeDiffusivityYSU().

Here is the caller graph for this function:
- + diff --git a/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.map b/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.map index b98a10ed6f..9f96056b93 100644 --- a/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.map +++ b/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.map @@ -1,7 +1,7 @@ - + diff --git a/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.md5 b/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.md5 index ff8c7f4be8..d73784be19 100644 --- a/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.md5 +++ b/ERF__TerrainMetrics_8H_a32eeeb066c70da970aa6a60918515987_icgraph.md5 @@ -1 +1 @@ -e399a2e53a7c35a8aa10f266feef1859 \ No newline at end of file +7218423f93561d9f2202324ece3d9eb0 \ No newline at end of file diff --git a/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.map b/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.map index c896e387b5..121ec1cc0f 100644 --- a/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.map +++ b/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.map @@ -1,6 +1,6 @@ - + diff --git a/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.md5 b/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.md5 index 5379430118..f9cd448498 100644 --- a/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.md5 +++ b/ERF__TerrainMetrics_8H_a41f9b3a5604791daf44935b10a55a565_icgraph.md5 @@ -1 +1 @@ -702d5e3a9a25c779d87a319f6cd99e9a \ No newline at end of file +e9267e34a7d3fe2812283a9f79afa0a9 \ No newline at end of file diff --git a/ERF__Thetav_8H.html b/ERF__Thetav_8H.html index 9cd5338b40..e00e117979 100644 --- a/ERF__Thetav_8H.html +++ b/ERF__Thetav_8H.html @@ -150,12 +150,12 @@ - - + +

Functions

AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav (int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
 
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav (int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
 

Function Documentation

- -

◆ Thetav()

+ +

◆ Thetav()

@@ -190,6 +190,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -203,34 +209,36 @@

-
14 {
-
15  amrex::Real thetav = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
-
16 
-
17  if (RhoQr_comp > 0) {
-
18  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQv_comp) / cell_data(i,j,k,Rho_comp)
-
19  - cell_data(i,j,k,RhoQr_comp) / cell_data(i,j,k,Rho_comp));
-
20  } else if (RhoQv_comp > 0) {
-
21  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQ1_comp) / cell_data(i,j,k,Rho_comp));
-
22  }
-
23 
-
24  return thetav;
-
25 }
+
15 {
+
16  amrex::Real thetav = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
+
17 
+
18  if (RhoQr_comp > 0) {
+
19  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQv_comp) / cell_data(i,j,k,Rho_comp)
+
20  - cell_data(i,j,k,RhoQc_comp) / cell_data(i,j,k,Rho_comp)
+
21  - cell_data(i,j,k,RhoQr_comp) / cell_data(i,j,k,Rho_comp));
+
22  } else if (RhoQv_comp > 0) {
+
23  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQ1_comp) / cell_data(i,j,k,Rho_comp)
+
24  - cell_data(i,j,k,RhoQc_comp) / cell_data(i,j,k,Rho_comp));
+
25  }
+
26 
+
27  return thetav;
+
28 }
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoTheta_comp
#define RhoTheta_comp
Definition: ERF_IndexDefines.H:37
RhoQ1_comp
#define RhoQ1_comp
Definition: ERF_IndexDefines.H:42
-

Referenced by MYNNPBLH::compute_pblh(), and ComputeVerticalDerivativesPBL().

+

Referenced by MYNNPBLH::compute_pblh(), and ComputeVerticalDerivativesPBL().

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-
- +
+ - - - + + + - + diff --git a/ERF__Thetav_8H.js b/ERF__Thetav_8H.js index 830514b4a9..28d0feca47 100644 --- a/ERF__Thetav_8H.js +++ b/ERF__Thetav_8H.js @@ -1,4 +1,4 @@ var ERF__Thetav_8H = [ - [ "Thetav", "ERF__Thetav_8H.html#a7af8b3624ec46045f269761983ec238e", null ] + [ "Thetav", "ERF__Thetav_8H.html#a560eb559ee1d5b8dceaae23f4f4581d5", null ] ]; \ No newline at end of file diff --git a/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.map b/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.map similarity index 68% rename from ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.map rename to ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.map index 450f3a1870..2ca8d82108 100644 --- a/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.map +++ b/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.map @@ -1,10 +1,10 @@ - - - + + + - + diff --git a/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.md5 b/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.md5 new file mode 100644 index 0000000000..388b1b9b42 --- /dev/null +++ b/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.md5 @@ -0,0 +1 @@ +c7c5309038ac2295c5cd1935b94b9113 \ No newline at end of file diff --git a/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.png b/ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.png similarity index 100% rename from ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.png rename to ERF__Thetav_8H_a560eb559ee1d5b8dceaae23f4f4581d5_icgraph.png diff --git a/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.md5 b/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.md5 deleted file mode 100644 index ac0d61ce7c..0000000000 --- a/ERF__Thetav_8H_a7af8b3624ec46045f269761983ec238e_icgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -a38b75204692b98d04bf70c2d74918e6 \ No newline at end of file diff --git a/ERF__Thetav_8H_source.html b/ERF__Thetav_8H_source.html index 02dbe00c91..7d5db84543 100644 --- a/ERF__Thetav_8H_source.html +++ b/ERF__Thetav_8H_source.html @@ -95,27 +95,30 @@
7 AMREX_GPU_DEVICE
8 AMREX_FORCE_INLINE
9 amrex::Real
-
10 Thetav (int i, int j, int k,
+
10 Thetav (int i, int j, int k,
11  const amrex::Array4<const amrex::Real>& cell_data,
12  const int RhoQv_comp,
-
13  const int RhoQr_comp)
-
14 {
-
15  amrex::Real thetav = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
-
16 
-
17  if (RhoQr_comp > 0) {
-
18  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQv_comp) / cell_data(i,j,k,Rho_comp)
-
19  - cell_data(i,j,k,RhoQr_comp) / cell_data(i,j,k,Rho_comp));
-
20  } else if (RhoQv_comp > 0) {
-
21  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQ1_comp) / cell_data(i,j,k,Rho_comp));
-
22  }
-
23 
-
24  return thetav;
-
25 }
-
26 #endif
+
13  const int RhoQc_comp,
+
14  const int RhoQr_comp)
+
15 {
+
16  amrex::Real thetav = cell_data(i,j,k,RhoTheta_comp) / cell_data(i,j,k,Rho_comp);
+
17 
+
18  if (RhoQr_comp > 0) {
+
19  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQv_comp) / cell_data(i,j,k,Rho_comp)
+
20  - cell_data(i,j,k,RhoQc_comp) / cell_data(i,j,k,Rho_comp)
+
21  - cell_data(i,j,k,RhoQr_comp) / cell_data(i,j,k,Rho_comp));
+
22  } else if (RhoQv_comp > 0) {
+
23  thetav *= (1.0 + 0.61 * cell_data(i,j,k,RhoQ1_comp) / cell_data(i,j,k,Rho_comp)
+
24  - cell_data(i,j,k,RhoQc_comp) / cell_data(i,j,k,Rho_comp));
+
25  }
+
26 
+
27  return thetav;
+
28 }
+
29 #endif
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoTheta_comp
#define RhoTheta_comp
Definition: ERF_IndexDefines.H:37
RhoQ1_comp
#define RhoQ1_comp
Definition: ERF_IndexDefines.H:42
-
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10
+
Thetav
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
Definition: ERF_Thetav.H:10

diff --git a/ERF__TileNoZ_8H.html b/ERF__TileNoZ_8H.html index b0bf05c544..4193ece318 100644 --- a/ERF__TileNoZ_8H.html +++ b/ERF__TileNoZ_8H.html @@ -190,7 +190,7 @@

20  }

21 }
-

Referenced by add_thin_body_sources(), ERF::Advance(), ERF::advance_dycore(), TurbulentPerturbation::calc_tpi_meanMag_perBox(), MYNNPBLH::compute_pblh(), MOSTAverage::compute_plane_averages(), MOSTAverage::compute_region_averages(), ComputeTurbulentViscosityLES(), ERF::erf_enforce_hse(), erf_fast_rhs_N(), erf_fast_rhs_T(), erf_init_dens_hse(), erf_make_tau_terms(), erf_slow_rhs_pre(), SAM::IceFall(), Kessler::Init(), SAM::Init(), ERF::init_custom(), ERF::init_from_hse(), Radiation::initialize(), make_fast_coeffs(), make_sources(), TurbulentPerturbation::netZeroBuoyantAdd(), TurbulentPerturbation::netZeroBuoyantAdjust(), SAM::PrecipFall(), TurbulentPerturbation::pseudoRandomPert(), MOSTAverage::set_k_indices_T(), MOSTAverage::set_norm_indices_T(), MOSTAverage::set_norm_positions_T(), MOSTAverage::set_rotated_fields(), MOSTAverage::set_z_positions_T(), ERF::turbPert_amplitude(), MOSTAverage::write_averages(), MOSTAverage::write_k_indices(), MOSTAverage::write_norm_indices(), and MOSTAverage::write_xz_positions().

+

Referenced by add_thin_body_sources(), ERF::Advance(), ERF::advance_dycore(), TurbulentPerturbation::calc_tpi_meanMag_perBox(), MYNNPBLH::compute_pblh(), MOSTAverage::compute_plane_averages(), MOSTAverage::compute_region_averages(), ComputeTurbulentViscosityLES(), ERF::erf_enforce_hse(), erf_fast_rhs_N(), erf_fast_rhs_T(), erf_init_dens_hse(), erf_make_tau_terms(), erf_slow_rhs_pre(), SAM::IceFall(), Kessler::Init(), SAM::Init(), ERF::init_custom(), ERF::init_from_hse(), Radiation::initialize(), make_fast_coeffs(), make_sources(), TurbulentPerturbation::netZeroBuoyantAdd(), TurbulentPerturbation::netZeroBuoyantAdjust(), SAM::PrecipFall(), TurbulentPerturbation::pseudoRandomPert(), MOSTAverage::set_k_indices_T(), MOSTAverage::set_norm_indices_T(), MOSTAverage::set_norm_positions_T(), MOSTAverage::set_rotated_fields(), MOSTAverage::set_z_positions_T(), ERF::turbPert_amplitude(), MOSTAverage::write_averages(), MOSTAverage::write_k_indices(), MOSTAverage::write_norm_indices(), and MOSTAverage::write_xz_positions().

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@@ -201,7 +201,7 @@

- + diff --git a/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map b/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map index 81fc75db9e..e729e092de 100644 --- a/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map +++ b/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.map @@ -4,7 +4,7 @@ - + diff --git a/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 b/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 index a90f1712c5..fb29aaaa12 100644 --- a/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 +++ b/ERF__TileNoZ_8H_a8da113f1d5603f7297fe1d03e5013f00_icgraph.md5 @@ -1 +1 @@ -f6dcfe2fb2805b4b0fe15cc87ec0c83c \ No newline at end of file +cf0bff698cb179a5e744c01661920389 \ No newline at end of file diff --git a/classABLMost-members.html b/classABLMost-members.html index 2de38980a1..8116e602e8 100644 --- a/classABLMost-members.html +++ b/classABLMost-members.html @@ -95,8 +95,8 @@ compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)ABLMost compute_most_bcs(const int &lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *xxmom_flux, amrex::MultiFab *yymom_flux, amrex::MultiFab *zzmom_flux, amrex::MultiFab *xymom_flux, amrex::MultiFab *yxmom_flux, amrex::MultiFab *xzmom_flux, amrex::MultiFab *zxmom_flux, amrex::MultiFab *yzmom_flux, amrex::MultiFab *zymom_flux, amrex::MultiFab *xheat_flux, amrex::MultiFab *yheat_flux, amrex::MultiFab *zheat_flux, amrex::MultiFab *xqv_flux, amrex::MultiFab *yqv_flux, amrex::MultiFab *zqv_flux, amrex::MultiFab *z_phys, const FluxCalc &flux_comp)ABLMost compute_most_bcs(const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xxmom_flux, MultiFab *yymom_flux, MultiFab *zzmom_flux, MultiFab *xymom_flux, MultiFab *yxmom_flux, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *xheat_flux, MultiFab *yheat_flux, MultiFab *zheat_flux, MultiFab *xqv_flux, MultiFab *yqv_flux, MultiFab *zqv_flux, MultiFab *z_phys, const FluxCalc &flux_comp)ABLMost - compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQr_comp)ABLMost - compute_pblh(const int &lev, Vector< Vector< MultiFab >> &vars, MultiFab *z_phys_cc, const PBLHeightEstimator &est, int RhoQv_comp, int RhoQr_comp)ABLMost + compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)ABLMost + compute_pblh(const int &lev, Vector< Vector< MultiFab >> &vars, MultiFab *z_phys_cc, const PBLHeightEstimator &est, int RhoQv_comp, int RhoQc_comp, int RhoQr_comp)ABLMost custom_qstarABLMostprivate custom_tstarABLMostprivate custom_ustarABLMostprivate @@ -153,7 +153,7 @@ u_starABLMostprivate update_fluxes(const int &lev, const amrex::Real &time, int max_iters=25)ABLMost update_mac_ptrs(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim)ABLMostinline - update_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQr_comp)ABLMost + update_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)ABLMost update_surf_temp(const amrex::Real &time)ABLMostinline use_moistureABLMostprivate w_starABLMostprivate diff --git a/classABLMost.html b/classABLMost.html index 7c4a86cc10..8d77e54af9 100644 --- a/classABLMost.html +++ b/classABLMost.html @@ -172,11 +172,11 @@   void get_lsm_tsurf (const int &lev)   -void update_pblh (const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQr_comp) -  -template<typename PBLHeightEstimator > -void compute_pblh (const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQr_comp) -  +void update_pblh (const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp) +  +template<typename PBLHeightEstimator > +void compute_pblh (const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp) +  void read_custom_roughness (const int &lev, const std::string &fname)   void update_surf_temp (const amrex::Real &time) @@ -212,9 +212,9 @@ template<typename FluxCalc > void compute_most_bcs (const int &lev, const Vector< MultiFab * > &mfs, MultiFab *xxmom_flux, MultiFab *yymom_flux, MultiFab *zzmom_flux, MultiFab *xymom_flux, MultiFab *yxmom_flux, MultiFab *xzmom_flux, MultiFab *zxmom_flux, MultiFab *yzmom_flux, MultiFab *zymom_flux, MultiFab *xheat_flux, MultiFab *yheat_flux, MultiFab *zheat_flux, MultiFab *xqv_flux, MultiFab *yqv_flux, MultiFab *zqv_flux, MultiFab *z_phys, const FluxCalc &flux_comp)   -template<typename PBLHeightEstimator > -void compute_pblh (const int &lev, Vector< Vector< MultiFab >> &vars, MultiFab *z_phys_cc, const PBLHeightEstimator &est, int RhoQv_comp, int RhoQr_comp) -  +template<typename PBLHeightEstimator > +void compute_pblh (const int &lev, Vector< Vector< MultiFab >> &vars, MultiFab *z_phys_cc, const PBLHeightEstimator &est, int RhoQv_comp, int RhoQc_comp, int RhoQr_comp) +  @@ -334,12 +334,12 @@

ROTATE 

Public Attributes

Terrain rotation flux functional form.

-
464  {
-
465  MOENG = 0, ///< Moeng functional form
-
466  DONELAN, ///< Donelan functional form
-
467  CUSTOM, ///< Custom constant flux functional form
-
468  ROTATE ///< Terrain rotation flux functional form
-
469  };
+
468  {
+
469  MOENG = 0, ///< Moeng functional form
+
470  DONELAN, ///< Donelan functional form
+
471  CUSTOM, ///< Custom constant flux functional form
+
472  ROTATE ///< Terrain rotation flux functional form
+
473  };

@@ -367,9 +367,9 @@

MYNN25  YSU  -
485  {
-
486  None, MYNN25, YSU
-
487  };
+
489  {
+
490  None, MYNN25, YSU
+
491  };
MolecDiffType::None
@ None
@@ -401,13 +401,13 @@

DONELAN  WAVE_COUPLED  -
477  {
-
478  CONSTANT = 0, ///< Constant z0
-
479  CHARNOCK,
-
480  MODIFIED_CHARNOCK,
-
481  DONELAN,
-
482  WAVE_COUPLED
-
483  };
+
481  {
+
482  CONSTANT = 0, ///< Constant z0
+
483  CHARNOCK,
+
484  MODIFIED_CHARNOCK,
+
485  DONELAN,
+
486  WAVE_COUPLED
+
487  };
@@ -437,11 +437,11 @@

SURFACE_TEMPERATURE 

Surface temperature specified.

-
471  {
-
472  ADIABATIC = 0,
-
473  HEAT_FLUX, ///< Heat-flux specified
-
474  SURFACE_TEMPERATURE ///< Surface temperature specified
-
475  };
+
475  {
+
476  ADIABATIC = 0,
+
477  HEAT_FLUX, ///< Heat-flux specified
+
478  SURFACE_TEMPERATURE ///< Surface temperature specified
+
479  };
@@ -828,62 +828,62 @@

308  }// lev
309  }
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: ERF_MicrophysicsUtils.H:219
-
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ERF_ABLMost.H:511
-
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ERF_ABLMost.H:531
-
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ERF_ABLMost.H:520
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ERF_ABLMost.H:521
-
ABLMost::w_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > w_star
Definition: ERF_ABLMost.H:518
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ERF_ABLMost.H:513
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ERF_ABLMost.H:512
-
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ERF_ABLMost.H:504
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ERF_ABLMost.H:523
-
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ERF_ABLMost.H:506
-
ABLMost::depth
amrex::Real depth
Definition: ERF_ABLMost.H:509
-
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ERF_ABLMost.H:502
-
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ERF_ABLMost.H:528
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ERF_ABLMost.H:516
+
ABLMost::m_bdy_time_interval
amrex::Real m_bdy_time_interval
Definition: ERF_ABLMost.H:515
+
ABLMost::m_eddyDiffs_lev
amrex::Vector< amrex::MultiFab * > m_eddyDiffs_lev
Definition: ERF_ABLMost.H:535
+
ABLMost::q_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > q_star
Definition: ERF_ABLMost.H:524
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ERF_ABLMost.H:525
+
ABLMost::w_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > w_star
Definition: ERF_ABLMost.H:522
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ERF_ABLMost.H:517
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ERF_ABLMost.H:516
+
ABLMost::custom_ustar
amrex::Real custom_ustar
Definition: ERF_ABLMost.H:508
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ERF_ABLMost.H:527
+
ABLMost::custom_qstar
amrex::Real custom_qstar
Definition: ERF_ABLMost.H:510
+
ABLMost::depth
amrex::Real depth
Definition: ERF_ABLMost.H:513
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ERF_ABLMost.H:506
+
ABLMost::m_lsm_flux_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_flux_lev
Definition: ERF_ABLMost.H:532
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ERF_ABLMost.H:520
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
-
ABLMost::lmask_min_reduce
int lmask_min_reduce(amrex::iMultiFab &lmask, const int &nghost)
Definition: ERF_ABLMost.H:445
-
ABLMost::cnk_visc
bool cnk_visc
Definition: ERF_ABLMost.H:508
-
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ERF_ABLMost.H:510
-
ABLMost::pblh
amrex::Vector< std::unique_ptr< amrex::MultiFab > > pblh
Definition: ERF_ABLMost.H:522
-
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ERF_ABLMost.H:529
-
ABLMost::read_custom_roughness
void read_custom_roughness(const int &lev, const std::string &fname)
Definition: ERF_ABLMost.cpp:588
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ERF_ABLMost.H:501
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ERF_ABLMost.H:507
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ERF_ABLMost.H:490
-
ABLMost::pblh_type
PBLHeightCalcType pblh_type
Definition: ERF_ABLMost.H:493
+
ABLMost::lmask_min_reduce
int lmask_min_reduce(amrex::iMultiFab &lmask, const int &nghost)
Definition: ERF_ABLMost.H:449
+
ABLMost::cnk_visc
bool cnk_visc
Definition: ERF_ABLMost.H:512
+
ABLMost::m_start_bdy_time
amrex::Real m_start_bdy_time
Definition: ERF_ABLMost.H:514
+
ABLMost::pblh
amrex::Vector< std::unique_ptr< amrex::MultiFab > > pblh
Definition: ERF_ABLMost.H:526
+
ABLMost::m_Hwave_lev
amrex::Vector< amrex::MultiFab * > m_Hwave_lev
Definition: ERF_ABLMost.H:533
+
ABLMost::read_custom_roughness
void read_custom_roughness(const int &lev, const std::string &fname)
Definition: ERF_ABLMost.cpp:592
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ERF_ABLMost.H:505
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ERF_ABLMost.H:511
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ERF_ABLMost.H:494
+
ABLMost::pblh_type
PBLHeightCalcType pblh_type
Definition: ERF_ABLMost.H:497
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::CUSTOM
@ CUSTOM
Custom constant flux functional form.
ABLMost::FluxCalcType::ROTATE
@ ROTATE
Terrain rotation flux functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ERF_ABLMost.H:527
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ERF_ABLMost.H:503
-
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ERF_ABLMost.H:526
-
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ERF_ABLMost.H:491
-
ABLMost::m_rotate
bool m_rotate
Definition: ERF_ABLMost.H:498
-
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ERF_ABLMost.H:530
-
ABLMost::m_var_z0
bool m_var_z0
Definition: ERF_ABLMost.H:514
-
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ERF_ABLMost.H:492
-
ABLMost::use_moisture
bool use_moisture
Definition: ERF_ABLMost.H:496
-
ABLMost::m_include_wstar
bool m_include_wstar
Definition: ERF_ABLMost.H:499
-
ABLMost::m_exp_most
bool m_exp_most
Definition: ERF_ABLMost.H:497
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ERF_ABLMost.H:519
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ERF_ABLMost.H:517
+
ABLMost::m_lsm_data_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_lsm_data_lev
Definition: ERF_ABLMost.H:531
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ERF_ABLMost.H:507
+
ABLMost::m_lmask_lev
amrex::Vector< amrex::Vector< amrex::iMultiFab * > > m_lmask_lev
Definition: ERF_ABLMost.H:530
+
ABLMost::rough_type_land
RoughCalcType rough_type_land
Definition: ERF_ABLMost.H:495
+
ABLMost::m_rotate
bool m_rotate
Definition: ERF_ABLMost.H:502
+
ABLMost::m_Lwave_lev
amrex::Vector< amrex::MultiFab * > m_Lwave_lev
Definition: ERF_ABLMost.H:534
+
ABLMost::m_var_z0
bool m_var_z0
Definition: ERF_ABLMost.H:518
+
ABLMost::rough_type_sea
RoughCalcType rough_type_sea
Definition: ERF_ABLMost.H:496
+
ABLMost::use_moisture
bool use_moisture
Definition: ERF_ABLMost.H:500
+
ABLMost::m_include_wstar
bool m_include_wstar
Definition: ERF_ABLMost.H:503
+
ABLMost::m_exp_most
bool m_exp_most
Definition: ERF_ABLMost.H:501
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ERF_ABLMost.H:523
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ERF_ABLMost.H:521
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ERF_ABLMost.H:500
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ERF_ABLMost.H:489
-
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ERF_ABLMost.H:525
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ERF_ABLMost.H:504
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ERF_ABLMost.H:493
+
ABLMost::m_sst_lev
amrex::Vector< amrex::Vector< amrex::MultiFab * > > m_sst_lev
Definition: ERF_ABLMost.H:529
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
-
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ERF_ABLMost.H:505
+
ABLMost::custom_tstar
amrex::Real custom_tstar
Definition: ERF_ABLMost.H:509
Vars::cons
@ cons
Definition: ERF_IndexDefines.H:129
Here is the call graph for this function:
@@ -1485,8 +1485,8 @@

-

◆ compute_pblh() [1/2]

+ +

◆ compute_pblh() [1/2]

@@ -1523,6 +1523,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -1539,8 +1545,8 @@

-

◆ compute_pblh() [2/2]

+ +

◆ compute_pblh() [2/2]

@@ -1577,6 +1583,12 @@

int  RhoQv_comp, + + + + int  + RhoQc_comp, + @@ -1590,11 +1602,11 @@

-
581 {
-
582  est.compute_pblh(m_geom[lev],z_phys_cc, pblh[lev].get(),
-
583  vars[lev][Vars::cons],m_lmask_lev[lev][0],
-
584  RhoQv_comp, RhoQr_comp);
-
585 }
+
585 {
+
586  est.compute_pblh(m_geom[lev],z_phys_cc, pblh[lev].get(),
+
587  vars[lev][Vars::cons],m_lmask_lev[lev][0],
+
588  RhoQv_comp, RhoQc_comp, RhoQr_comp);
+
589 }

@@ -1621,7 +1633,7 @@

-
442 { return m_lmask_lev[lev][0]; }
+
446 { return m_lmask_lev[lev][0]; }

@@ -1706,7 +1718,7 @@

-
428 { return m_ma.get_average(lev,comp); }
+
432 { return m_ma.get_average(lev,comp); }
Here is the call graph for this function:
@@ -1742,7 +1754,7 @@

-
422 { return olen[lev].get(); }
+
426 { return olen[lev].get(); }

@@ -1769,7 +1781,7 @@

-
425 { return pblh[lev].get(); }
+
429 { return pblh[lev].get(); }

@@ -1796,7 +1808,7 @@

-
419 { return q_star[lev].get(); }
+
423 { return q_star[lev].get(); }

@@ -1823,7 +1835,7 @@

-
416 { return t_star[lev].get(); }
+
420 { return t_star[lev].get(); }

@@ -1850,7 +1862,7 @@

-
431 { return t_surf[lev].get(); }
+
435 { return t_surf[lev].get(); }
@@ -1877,7 +1889,7 @@

-
410 { return u_star[lev].get(); }
+
414 { return u_star[lev].get(); }
@@ -1904,7 +1916,7 @@

-
413 { return w_star[lev].get(); }
+
417 { return w_star[lev].get(); }
@@ -1931,7 +1943,7 @@

-
437 { return &z_0[lev]; }
+
441 { return &z_0[lev]; }
@@ -1957,7 +1969,7 @@

-
434 { return m_ma.get_zref(); }
+
438 { return m_ma.get_zref(); }
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: ERF_MOSTAverage.H:95
Here is the call graph for this function:
@@ -1993,7 +2005,7 @@

-
439 { return m_var_z0; }
+
443 { return m_var_z0; }

@@ -2220,23 +2232,23 @@

-
446  {
-
447  int lmask_min = amrex::ReduceMin(lmask, nghost,
-
448  [=] AMREX_GPU_HOST_DEVICE (amrex::Box const& bx, amrex::Array4<int const> const& lm_arr) -> int
-
449  {
-
450  int locmin = std::numeric_limits<int>::max();
-
451  const auto lo = lbound(bx);
-
452  const auto hi = ubound(bx);
-
453  for (int j = lo.y; j <= hi.y; ++j) {
-
454  for (int i = lo.x; i <= hi.x; ++i) {
-
455  locmin = std::min(locmin, lm_arr(i,j,0));
-
456  }
-
457  }
-
458  return locmin;
-
459  });
-
460 
-
461  return lmask_min;
-
462  }
+
450  {
+
451  int lmask_min = amrex::ReduceMin(lmask, nghost,
+
452  [=] AMREX_GPU_HOST_DEVICE (amrex::Box const& bx, amrex::Array4<int const> const& lm_arr) -> int
+
453  {
+
454  int locmin = std::numeric_limits<int>::max();
+
455  const auto lo = lbound(bx);
+
456  const auto hi = ubound(bx);
+
457  for (int j = lo.y; j <= hi.y; ++j) {
+
458  for (int i = lo.x; i <= hi.x; ++i) {
+
459  locmin = std::min(locmin, lm_arr(i,j,0));
+
460  }
+
461  }
+
462  return locmin;
+
463  });
+
464 
+
465  return lmask_min;
+
466  }

Referenced by ABLMost().

@@ -2276,102 +2288,102 @@

-
590 {
-
591  // Read the file if we are on the coarsest level
-
592  if (lev==0) {
-
593  // Only the ioproc reads the file and broadcasts
-
594  if (ParallelDescriptor::IOProcessor()) {
-
595  Print()<<"Reading MOST roughness file: "<< fname << std::endl;
-
596  std::ifstream file(fname);
-
597  Gpu::HostVector<Real> m_x,m_y,m_z0;
-
598  Real value1,value2,value3;
-
599  while(file>>value1>>value2>>value3){
-
600  m_x.push_back(value1);
-
601  m_y.push_back(value2);
-
602  m_z0.push_back(value3);
-
603  }
-
604  file.close();
-
605 
-
606  // Copy data to the GPU
-
607  int nnode = m_x.size();
-
608  Gpu::DeviceVector<Real> d_x(nnode),d_y(nnode),d_z0(nnode);
-
609  Gpu::copy(Gpu::hostToDevice, m_x.begin(), m_x.end(), d_x.begin());
-
610  Gpu::copy(Gpu::hostToDevice, m_y.begin(), m_y.end(), d_y.begin());
-
611  Gpu::copy(Gpu::hostToDevice, m_z0.begin(), m_z0.end(), d_z0.begin());
-
612  Real* xp = d_x.data();
-
613  Real* yp = d_y.data();
-
614  Real* z0p = d_z0.data();
-
615 
-
616  // Populate z_phys data
-
617  Real tol = 1.0e-4;
-
618  auto dx = m_geom[lev].CellSizeArray();
-
619  auto ProbLoArr = m_geom[lev].ProbLoArray();
-
620  int ilo = m_geom[lev].Domain().smallEnd(0);
-
621  int jlo = m_geom[lev].Domain().smallEnd(1);
-
622  int klo = 0;
-
623  int ihi = m_geom[lev].Domain().bigEnd(0);
-
624  int jhi = m_geom[lev].Domain().bigEnd(1);
-
625 
-
626  // Grown box with no z range
-
627  Box xybx = z_0[lev].box();
-
628  xybx.setRange(2,0);
+
594 {
+
595  // Read the file if we are on the coarsest level
+
596  if (lev==0) {
+
597  // Only the ioproc reads the file and broadcasts
+
598  if (ParallelDescriptor::IOProcessor()) {
+
599  Print()<<"Reading MOST roughness file: "<< fname << std::endl;
+
600  std::ifstream file(fname);
+
601  Gpu::HostVector<Real> m_x,m_y,m_z0;
+
602  Real value1,value2,value3;
+
603  while(file>>value1>>value2>>value3){
+
604  m_x.push_back(value1);
+
605  m_y.push_back(value2);
+
606  m_z0.push_back(value3);
+
607  }
+
608  file.close();
+
609 
+
610  // Copy data to the GPU
+
611  int nnode = m_x.size();
+
612  Gpu::DeviceVector<Real> d_x(nnode),d_y(nnode),d_z0(nnode);
+
613  Gpu::copy(Gpu::hostToDevice, m_x.begin(), m_x.end(), d_x.begin());
+
614  Gpu::copy(Gpu::hostToDevice, m_y.begin(), m_y.end(), d_y.begin());
+
615  Gpu::copy(Gpu::hostToDevice, m_z0.begin(), m_z0.end(), d_z0.begin());
+
616  Real* xp = d_x.data();
+
617  Real* yp = d_y.data();
+
618  Real* z0p = d_z0.data();
+
619 
+
620  // Populate z_phys data
+
621  Real tol = 1.0e-4;
+
622  auto dx = m_geom[lev].CellSizeArray();
+
623  auto ProbLoArr = m_geom[lev].ProbLoArray();
+
624  int ilo = m_geom[lev].Domain().smallEnd(0);
+
625  int jlo = m_geom[lev].Domain().smallEnd(1);
+
626  int klo = 0;
+
627  int ihi = m_geom[lev].Domain().bigEnd(0);
+
628  int jhi = m_geom[lev].Domain().bigEnd(1);
629 
-
630  Array4<Real> const& z0_arr = z_0[lev].array();
-
631  ParallelFor(xybx, [=] AMREX_GPU_DEVICE (int i, int j, int /*k*/)
-
632  {
-
633  // Clip indices for ghost-cells
-
634  int ii = amrex::min(amrex::max(i,ilo),ihi);
-
635  int jj = amrex::min(amrex::max(j,jlo),jhi);
-
636 
-
637  // Location of nodes
-
638  Real x = ProbLoArr[0] + ii * dx[0];
-
639  Real y = ProbLoArr[1] + jj * dx[1];
-
640  int inode = ii + jj * (ihi-ilo+2); // stride is Nx+1
-
641  if (std::sqrt(std::pow(x-xp[inode],2)+std::pow(y-yp[inode],2)) < tol) {
-
642  z0_arr(i,j,klo) = z0p[inode];
-
643  } else {
-
644  // Unexpected list order, do brute force search
-
645  Real z0loc = 0.0;
-
646  bool found = false;
-
647  for (int n=0; n<nnode; ++n) {
-
648  Real delta=std::sqrt(std::pow(x-xp[n],2)+std::pow(y-yp[n],2));
-
649  if (delta < tol) {
-
650  found = true;
-
651  z0loc = z0p[n];
-
652  break;
-
653  }
-
654  }
-
655  AMREX_ASSERT_WITH_MESSAGE(found, "Location read from terrain file does not match the grid!");
-
656  amrex::ignore_unused(found);
-
657  z0_arr(i,j,klo) = z0loc;
-
658  }
-
659  });
-
660  } // Is ioproc
-
661 
-
662  int ioproc = ParallelDescriptor::IOProcessorNumber();
-
663  ParallelDescriptor::Barrier();
-
664  ParallelDescriptor::Bcast(z_0[lev].dataPtr(),z_0[lev].box().numPts(),ioproc);
-
665  } else {
-
666  // Create a BC mapper that uses FOEXTRAP at domain bndry
-
667  Vector<int> bc_lo(3,ERFBCType::foextrap);
-
668  Vector<int> bc_hi(3,ERFBCType::foextrap);
-
669  Vector<BCRec> bcr; bcr.push_back(BCRec(bc_lo.data(),bc_hi.data()));
-
670 
-
671  // Create ref ratio
-
672  IntVect ratio;
-
673  for (int idim = 0; idim < AMREX_SPACEDIM; ++idim) {
-
674  ratio[idim] = m_geom[lev].Domain().length(idim) / m_geom[0].Domain().length(idim);
-
675  }
-
676 
-
677  // Create interp object and interpolate from the coarsest grid
-
678  Interpolater* interp = &cell_cons_interp;
-
679  interp->interp(z_0[0] , 0,
-
680  z_0[lev], 0,
-
681  1, z_0[lev].box(),
-
682  ratio, m_geom[0], m_geom[lev],
-
683  bcr, 0, 0, RunOn::Gpu);
-
684  }
-
685 }
+
630  // Grown box with no z range
+
631  Box xybx = z_0[lev].box();
+
632  xybx.setRange(2,0);
+
633 
+
634  Array4<Real> const& z0_arr = z_0[lev].array();
+
635  ParallelFor(xybx, [=] AMREX_GPU_DEVICE (int i, int j, int /*k*/)
+
636  {
+
637  // Clip indices for ghost-cells
+
638  int ii = amrex::min(amrex::max(i,ilo),ihi);
+
639  int jj = amrex::min(amrex::max(j,jlo),jhi);
+
640 
+
641  // Location of nodes
+
642  Real x = ProbLoArr[0] + ii * dx[0];
+
643  Real y = ProbLoArr[1] + jj * dx[1];
+
644  int inode = ii + jj * (ihi-ilo+2); // stride is Nx+1
+
645  if (std::sqrt(std::pow(x-xp[inode],2)+std::pow(y-yp[inode],2)) < tol) {
+
646  z0_arr(i,j,klo) = z0p[inode];
+
647  } else {
+
648  // Unexpected list order, do brute force search
+
649  Real z0loc = 0.0;
+
650  bool found = false;
+
651  for (int n=0; n<nnode; ++n) {
+
652  Real delta=std::sqrt(std::pow(x-xp[n],2)+std::pow(y-yp[n],2));
+
653  if (delta < tol) {
+
654  found = true;
+
655  z0loc = z0p[n];
+
656  break;
+
657  }
+
658  }
+
659  AMREX_ASSERT_WITH_MESSAGE(found, "Location read from terrain file does not match the grid!");
+
660  amrex::ignore_unused(found);
+
661  z0_arr(i,j,klo) = z0loc;
+
662  }
+
663  });
+
664  } // Is ioproc
+
665 
+
666  int ioproc = ParallelDescriptor::IOProcessorNumber();
+
667  ParallelDescriptor::Barrier();
+
668  ParallelDescriptor::Bcast(z_0[lev].dataPtr(),z_0[lev].box().numPts(),ioproc);
+
669  } else {
+
670  // Create a BC mapper that uses FOEXTRAP at domain bndry
+
671  Vector<int> bc_lo(3,ERFBCType::foextrap);
+
672  Vector<int> bc_hi(3,ERFBCType::foextrap);
+
673  Vector<BCRec> bcr; bcr.push_back(BCRec(bc_lo.data(),bc_hi.data()));
+
674 
+
675  // Create ref ratio
+
676  IntVect ratio;
+
677  for (int idim = 0; idim < AMREX_SPACEDIM; ++idim) {
+
678  ratio[idim] = m_geom[lev].Domain().length(idim) / m_geom[0].Domain().length(idim);
+
679  }
+
680 
+
681  // Create interp object and interpolate from the coarsest grid
+
682  Interpolater* interp = &cell_cons_interp;
+
683  interp->interp(z_0[0] , 0,
+
684  z_0[lev], 0,
+
685  1, z_0[lev].box(),
+
686  ratio, m_geom[0], m_geom[lev],
+
687  bcr, 0, 0, RunOn::Gpu);
+
688  }
+
689 }
Coord::y
@ y
Coord::x
@ x
ERFBCType::foextrap
@ foextrap
Definition: ERF_IndexDefines.H:179
@@ -2609,7 +2621,7 @@

134 }

ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux, bool is_land)
Definition: ERF_ABLMost.cpp:145
ABLMost::time_interp_sst
void time_interp_sst(const int &lev, const amrex::Real &time)
Definition: ERF_ABLMost.cpp:493
-
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ERF_ABLMost.H:386
+
ABLMost::update_surf_temp
void update_surf_temp(const amrex::Real &time)
Definition: ERF_ABLMost.H:390
ABLMost::get_lsm_tsurf
void get_lsm_tsurf(const int &lev)
Definition: ERF_ABLMost.cpp:528
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: ERF_MOSTAverage.cpp:648
adiabatic_charnock
Definition: ERF_MOSTStress.H:136
@@ -2681,7 +2693,7 @@

-
407  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim,Qr_prim); }
+
411  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim,Qv_prim,Qr_prim); }
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qv_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Qr_prim)
Definition: ERF_MOSTAverage.cpp:228
Here is the call graph for this function:
@@ -2695,8 +2707,8 @@

-

◆ update_pblh()

+ +

◆ update_pblh()

@@ -2725,6 +2737,12 @@

const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -2738,15 +2756,15 @@

-
565 {
-
566  if (pblh_type == PBLHeightCalcType::MYNN25) {
-
567  MYNNPBLH estimator;
-
568  compute_pblh(lev, vars, z_phys_cc, estimator, RhoQv_comp, RhoQr_comp);
-
569  } else if (pblh_type == PBLHeightCalcType::YSU) {
-
570  amrex::Error("YSU PBLH calc not implemented yet");
-
571  }
-
572 }
-
ABLMost::compute_pblh
void compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQr_comp)
+
567 {
+
568  if (pblh_type == PBLHeightCalcType::MYNN25) {
+
569  MYNNPBLH estimator;
+
570  compute_pblh(lev, vars, z_phys_cc, estimator, RhoQv_comp, RhoQc_comp, RhoQr_comp);
+
571  } else if (pblh_type == PBLHeightCalcType::YSU) {
+
572  amrex::Error("YSU PBLH calc not implemented yet");
+
573  }
+
574 }
+
ABLMost::compute_pblh
void compute_pblh(const int &lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars, amrex::MultiFab *z_phys_cc, const PBLHeightEstimator &est, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
MYNNPBLH
Definition: ERF_PBLHeight.H:8
@@ -2774,19 +2792,19 @@

-
387  {
-
388  if (surf_heating_rate != 0) {
-
389  int nlevs = m_geom.size();
-
390  for (int lev = 0; lev < nlevs; lev++)
-
391  {
-
392  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
-
393  amrex::Print() << "Surface temp at t=" << time
-
394  << ": "
-
395  << surf_temp + surf_heating_rate*time
-
396  << std::endl;
-
397  }
-
398  }
-
399  }
+
391  {
+
392  if (surf_heating_rate != 0) {
+
393  int nlevs = m_geom.size();
+
394  for (int lev = 0; lev < nlevs; lev++)
+
395  {
+
396  t_surf[lev]->setVal(surf_temp + surf_heating_rate*time);
+
397  amrex::Print() << "Surface temp at t=" << time
+
398  << ": "
+
399  << surf_temp + surf_heating_rate*time
+
400  << std::endl;
+
401  }
+
402  }
+
403  }

diff --git a/classABLMost.js b/classABLMost.js index 313baaf760..78845814f3 100644 --- a/classABLMost.js +++ b/classABLMost.js @@ -27,8 +27,8 @@ var classABLMost = [ "compute_fluxes", "classABLMost.html#a829339fc8e70a5dff8b7c85f3c2e4138", null ], [ "compute_most_bcs", "classABLMost.html#ac1b3a987e1f8518eec9552f6b747a4b1", null ], [ "compute_most_bcs", "classABLMost.html#a10ead55e11cc666e966cc68a1d1513b9", null ], - [ "compute_pblh", "classABLMost.html#af57fb2913f44e158afcc637a342df049", null ], - [ "compute_pblh", "classABLMost.html#a7f3d29d94d0808b3e0fe083396da8557", null ], + [ "compute_pblh", "classABLMost.html#a3a6533896d60b678bc447fa7fffcf8af", null ], + [ "compute_pblh", "classABLMost.html#a059897cd01e9bc745d37c53cad7f9162", null ], [ "get_lmask", "classABLMost.html#a48a21c911803192130c2472c89b72c72", null ], [ "get_lsm_tsurf", "classABLMost.html#ae28fd8a21f4b514875c24fe4b8e85081", null ], [ "get_mac_avg", "classABLMost.html#af26cdc6b8c162c14b2db32eb395f0565", null ], @@ -48,7 +48,7 @@ var classABLMost = [ "time_interp_sst", "classABLMost.html#aaeef06eb7d0ab7e3d100e583337121cc", null ], [ "update_fluxes", "classABLMost.html#af82057d4fbaaf1d8347cf18c7efd7b53", null ], [ "update_mac_ptrs", "classABLMost.html#a5fcdd773bc7314a2655bf3ce0e7536fe", null ], - [ "update_pblh", "classABLMost.html#a946fd5a428f2dce1139e553f50a4826a", null ], + [ "update_pblh", "classABLMost.html#a9cba175c3ff5be3dcdd14f97ed7c892e", null ], [ "update_surf_temp", "classABLMost.html#ad878840b1c998160ba79c1e9714adc70", null ], [ "cnk_a", "classABLMost.html#a75310e9079ee238a932900feaad85ac5", null ], [ "cnk_visc", "classABLMost.html#a4f97d1d8c347710155ead2c1310338a0", null ], diff --git a/classERF.html b/classERF.html index b50b512072..dbf899f772 100644 --- a/classERF.html +++ b/classERF.html @@ -126,9 +126,9 @@ - + - + @@ -137,18 +137,18 @@ - + - - - + + + - + @@ -1183,180 +1183,182 @@

110  // Reassign the field ptrs for MAC avg computation.

111  m_most->update_mac_ptrs(lev, vars_old, Theta_prim, Qv_prim, Qr_prim);
112  m_most->update_pblh(lev, vars_old, z_phys_cc[lev].get(),
-
113  solverChoice.RhoQv_comp, solverChoice.RhoQr_comp);
-
114  m_most->update_fluxes(lev, time);
-
115  }
-
116  }
-
117 
-
118 #if defined(ERF_USE_WINDFARM)
-
119  if (solverChoice.windfarm_type != WindFarmType::None) {
-
120  advance_windfarm(Geom(lev), dt_lev, S_old,
-
121  U_old, V_old, W_old, vars_windfarm[lev], Nturb[lev], SMark[lev], time);
-
122  }
-
123 
-
124 #endif
+
113  solverChoice.RhoQv_comp,
+
114  solverChoice.RhoQc_comp,
+
115  solverChoice.RhoQr_comp);
+
116  m_most->update_fluxes(lev, time);
+
117  }
+
118  }
+
119 
+
120 #if defined(ERF_USE_WINDFARM)
+
121  if (solverChoice.windfarm_type != WindFarmType::None) {
+
122  advance_windfarm(Geom(lev), dt_lev, S_old,
+
123  U_old, V_old, W_old, vars_windfarm[lev], Nturb[lev], SMark[lev], time);
+
124  }
125 
-
126  const BoxArray& ba = S_old.boxArray();
-
127  const DistributionMapping& dm = S_old.DistributionMap();
-
128 
-
129  int nvars = S_old.nComp();
+
126 #endif
+
127 
+
128  const BoxArray& ba = S_old.boxArray();
+
129  const DistributionMapping& dm = S_old.DistributionMap();
130 
-
131  // Source array for conserved cell-centered quantities -- this will be filled
-
132  // in the call to make_sources in ERF_TI_slow_rhs_fun.H
-
133  MultiFab cc_source(ba,dm,nvars,1); cc_source.setVal(0.0);
-
134 
-
135  // Source arrays for momenta -- these will be filled
-
136  // in the call to make_mom_sources in ERF_TI_slow_rhs_fun.H
-
137  BoxArray ba_x(ba); ba_x.surroundingNodes(0);
-
138  MultiFab xmom_source(ba_x,dm,nvars,1); xmom_source.setVal(0.0);
-
139 
-
140  BoxArray ba_y(ba); ba_y.surroundingNodes(1);
-
141  MultiFab ymom_source(ba_y,dm,nvars,1); ymom_source.setVal(0.0);
-
142 
-
143  BoxArray ba_z(ba); ba_z.surroundingNodes(2);
-
144  MultiFab zmom_source(ba_z,dm,nvars,1); zmom_source.setVal(0.0);
-
145 
-
146  // We don't need to call FillPatch on cons_mf because we have fillpatch'ed S_old above
-
147  MultiFab cons_mf(ba,dm,nvars,S_old.nGrowVect());
-
148  MultiFab::Copy(cons_mf,S_old,0,0,S_old.nComp(),S_old.nGrowVect());
-
149 
-
150  amrex::Vector<MultiFab> state_old;
-
151  amrex::Vector<MultiFab> state_new;
-
152 
-
153  // **************************************************************************************
-
154  // Here we define state_old and state_new which are to be advanced
+
131  int nvars = S_old.nComp();
+
132 
+
133  // Source array for conserved cell-centered quantities -- this will be filled
+
134  // in the call to make_sources in ERF_TI_slow_rhs_fun.H
+
135  MultiFab cc_source(ba,dm,nvars,1); cc_source.setVal(0.0);
+
136 
+
137  // Source arrays for momenta -- these will be filled
+
138  // in the call to make_mom_sources in ERF_TI_slow_rhs_fun.H
+
139  BoxArray ba_x(ba); ba_x.surroundingNodes(0);
+
140  MultiFab xmom_source(ba_x,dm,nvars,1); xmom_source.setVal(0.0);
+
141 
+
142  BoxArray ba_y(ba); ba_y.surroundingNodes(1);
+
143  MultiFab ymom_source(ba_y,dm,nvars,1); ymom_source.setVal(0.0);
+
144 
+
145  BoxArray ba_z(ba); ba_z.surroundingNodes(2);
+
146  MultiFab zmom_source(ba_z,dm,nvars,1); zmom_source.setVal(0.0);
+
147 
+
148  // We don't need to call FillPatch on cons_mf because we have fillpatch'ed S_old above
+
149  MultiFab cons_mf(ba,dm,nvars,S_old.nGrowVect());
+
150  MultiFab::Copy(cons_mf,S_old,0,0,S_old.nComp(),S_old.nGrowVect());
+
151 
+
152  amrex::Vector<MultiFab> state_old;
+
153  amrex::Vector<MultiFab> state_new;
+
154 
155  // **************************************************************************************
-
156  // Initial solution
-
157  // Note that "old" and "new" here are relative to each RK stage.
-
158  state_old.push_back(MultiFab(cons_mf , amrex::make_alias, 0, nvars)); // cons
-
159  state_old.push_back(MultiFab(rU_old[lev], amrex::make_alias, 0, 1)); // xmom
-
160  state_old.push_back(MultiFab(rV_old[lev], amrex::make_alias, 0, 1)); // ymom
-
161  state_old.push_back(MultiFab(rW_old[lev], amrex::make_alias, 0, 1)); // zmom
-
162 
-
163  // Final solution
-
164  // state_new at the end of the last RK stage holds the t^{n+1} data
-
165  state_new.push_back(MultiFab(S_new , amrex::make_alias, 0, nvars)); // cons
-
166  state_new.push_back(MultiFab(rU_new[lev], amrex::make_alias, 0, 1)); // xmom
-
167  state_new.push_back(MultiFab(rV_new[lev], amrex::make_alias, 0, 1)); // ymom
-
168  state_new.push_back(MultiFab(rW_new[lev], amrex::make_alias, 0, 1)); // zmom
-
169 
-
170  // **************************************************************************************
-
171  // Update the dycore
+
156  // Here we define state_old and state_new which are to be advanced
+
157  // **************************************************************************************
+
158  // Initial solution
+
159  // Note that "old" and "new" here are relative to each RK stage.
+
160  state_old.push_back(MultiFab(cons_mf , amrex::make_alias, 0, nvars)); // cons
+
161  state_old.push_back(MultiFab(rU_old[lev], amrex::make_alias, 0, 1)); // xmom
+
162  state_old.push_back(MultiFab(rV_old[lev], amrex::make_alias, 0, 1)); // ymom
+
163  state_old.push_back(MultiFab(rW_old[lev], amrex::make_alias, 0, 1)); // zmom
+
164 
+
165  // Final solution
+
166  // state_new at the end of the last RK stage holds the t^{n+1} data
+
167  state_new.push_back(MultiFab(S_new , amrex::make_alias, 0, nvars)); // cons
+
168  state_new.push_back(MultiFab(rU_new[lev], amrex::make_alias, 0, 1)); // xmom
+
169  state_new.push_back(MultiFab(rV_new[lev], amrex::make_alias, 0, 1)); // ymom
+
170  state_new.push_back(MultiFab(rW_new[lev], amrex::make_alias, 0, 1)); // zmom
+
171 
172  // **************************************************************************************
-
173  advance_dycore(lev, state_old, state_new,
-
174  U_old, V_old, W_old,
-
175  U_new, V_new, W_new,
-
176  cc_source, xmom_source, ymom_source, zmom_source,
-
177  Geom(lev), dt_lev, time);
-
178 
-
179  // **************************************************************************************
-
180  // Update the microphysics (moisture)
+
173  // Update the dycore
+
174  // **************************************************************************************
+
175  advance_dycore(lev, state_old, state_new,
+
176  U_old, V_old, W_old,
+
177  U_new, V_new, W_new,
+
178  cc_source, xmom_source, ymom_source, zmom_source,
+
179  Geom(lev), dt_lev, time);
+
180 
181  // **************************************************************************************
-
182  advance_microphysics(lev, S_new, dt_lev, iteration, time);
-
183 
-
184  // **************************************************************************************
-
185  // Update the land surface model
+
182  // Update the microphysics (moisture)
+
183  // **************************************************************************************
+
184  advance_microphysics(lev, S_new, dt_lev, iteration, time);
+
185 
186  // **************************************************************************************
-
187  advance_lsm(lev, S_new, dt_lev);
-
188 
-
189 #if defined(ERF_USE_RRTMGP)
-
190  // **************************************************************************************
-
191  // Update the radiation
+
187  // Update the land surface model
+
188  // **************************************************************************************
+
189  advance_lsm(lev, S_new, dt_lev);
+
190 
+
191 #if defined(ERF_USE_RRTMGP)
192  // **************************************************************************************
-
193  advance_radiation(lev, S_new, dt_lev);
-
194 #endif
-
195 
-
196 #ifdef ERF_USE_PARTICLES
-
197  // **************************************************************************************
-
198  // Update the particle positions
+
193  // Update the radiation
+
194  // **************************************************************************************
+
195  advance_radiation(lev, S_new, dt_lev);
+
196 #endif
+
197 
+
198 #ifdef ERF_USE_PARTICLES
199  // **************************************************************************************
-
200  evolveTracers( lev, dt_lev, vars_new, z_phys_nd );
-
201 #endif
-
202 
-
203  // ***********************************************************************************************
-
204  // Impose domain boundary conditions here so that in FillPatching the fine data we won't
-
205  // need to re-fill these
-
206  // ***********************************************************************************************
-
207  if (lev < finest_level) {
-
208  IntVect ngvect_vels = vars_new[lev][Vars::xvel].nGrowVect();
-
209  (*physbcs_cons[lev])(vars_new[lev][Vars::cons],0,vars_new[lev][Vars::cons].nComp(),
-
210  vars_new[lev][Vars::cons].nGrowVect(),time,BCVars::cons_bc,true);
-
211  (*physbcs_u[lev])(vars_new[lev][Vars::xvel],0,1,ngvect_vels,time,BCVars::xvel_bc,true);
-
212  (*physbcs_v[lev])(vars_new[lev][Vars::yvel],0,1,ngvect_vels,time,BCVars::yvel_bc,true);
-
213  (*physbcs_w[lev])(vars_new[lev][Vars::zvel], vars_new[lev][Vars::xvel], vars_new[lev][Vars::yvel],
-
214  ngvect_vels,time,BCVars::zvel_bc,true);
-
215  }
-
216 
-
217  // **************************************************************************************
-
218  // Register old and new coarse data if we are at a level less than the finest level
+
200  // Update the particle positions
+
201  // **************************************************************************************
+
202  evolveTracers( lev, dt_lev, vars_new, z_phys_nd );
+
203 #endif
+
204 
+
205  // ***********************************************************************************************
+
206  // Impose domain boundary conditions here so that in FillPatching the fine data we won't
+
207  // need to re-fill these
+
208  // ***********************************************************************************************
+
209  if (lev < finest_level) {
+
210  IntVect ngvect_vels = vars_new[lev][Vars::xvel].nGrowVect();
+
211  (*physbcs_cons[lev])(vars_new[lev][Vars::cons],0,vars_new[lev][Vars::cons].nComp(),
+
212  vars_new[lev][Vars::cons].nGrowVect(),time,BCVars::cons_bc,true);
+
213  (*physbcs_u[lev])(vars_new[lev][Vars::xvel],0,1,ngvect_vels,time,BCVars::xvel_bc,true);
+
214  (*physbcs_v[lev])(vars_new[lev][Vars::yvel],0,1,ngvect_vels,time,BCVars::yvel_bc,true);
+
215  (*physbcs_w[lev])(vars_new[lev][Vars::zvel], vars_new[lev][Vars::xvel], vars_new[lev][Vars::yvel],
+
216  ngvect_vels,time,BCVars::zvel_bc,true);
+
217  }
+
218 
219  // **************************************************************************************
-
220  if (lev < finest_level)
-
221  {
-
222  if (cf_width > 0) {
-
223  // We must fill the ghost cells of these so that the parallel copy works correctly
-
224  state_old[IntVars::cons].FillBoundary(geom[lev].periodicity());
-
225  state_new[IntVars::cons].FillBoundary(geom[lev].periodicity());
-
226  FPr_c[lev].RegisterCoarseData({&state_old[IntVars::cons], &state_new[IntVars::cons]},
-
227  {time, time + dt_lev});
-
228  }
-
229 
-
230  if (cf_width >= 0) {
-
231  // We must fill the ghost cells of these so that the parallel copy works correctly
-
232  state_old[IntVars::xmom].FillBoundary(geom[lev].periodicity());
-
233  state_new[IntVars::xmom].FillBoundary(geom[lev].periodicity());
-
234  FPr_u[lev].RegisterCoarseData({&state_old[IntVars::xmom], &state_new[IntVars::xmom]},
-
235  {time, time + dt_lev});
-
236 
-
237  state_old[IntVars::ymom].FillBoundary(geom[lev].periodicity());
-
238  state_new[IntVars::ymom].FillBoundary(geom[lev].periodicity());
-
239  FPr_v[lev].RegisterCoarseData({&state_old[IntVars::ymom], &state_new[IntVars::ymom]},
-
240  {time, time + dt_lev});
-
241 
-
242  state_old[IntVars::zmom].FillBoundary(geom[lev].periodicity());
-
243  state_new[IntVars::zmom].FillBoundary(geom[lev].periodicity());
-
244  FPr_w[lev].RegisterCoarseData({&state_old[IntVars::zmom], &state_new[IntVars::zmom]},
-
245  {time, time + dt_lev});
-
246  }
-
247 
-
248  //
-
249  // Now create a MultiFab that holds (S_new - S_old) / dt from the coarse level interpolated
-
250  // on to the coarse/fine boundary at the fine resolution
-
251  //
-
252  Interpolater* mapper_f = &face_cons_linear_interp;
-
253 
-
254  // PhysBCFunctNoOp null_bc;
-
255  // MultiFab tempx(vars_new[lev+1][Vars::xvel].boxArray(),vars_new[lev+1][Vars::xvel].DistributionMap(),1,0);
-
256  // tempx.setVal(0.0);
-
257  // xmom_crse_rhs[lev+1].setVal(0.0);
-
258  // FPr_u[lev].FillSet(tempx , time , null_bc, domain_bcs_type);
-
259  // FPr_u[lev].FillSet(xmom_crse_rhs[lev+1], time+dt_lev, null_bc, domain_bcs_type);
-
260  // MultiFab::Subtract(xmom_crse_rhs[lev+1],tempx,0,0,1,IntVect{0});
-
261  // xmom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
-
262 
-
263  // MultiFab tempy(vars_new[lev+1][Vars::yvel].boxArray(),vars_new[lev+1][Vars::yvel].DistributionMap(),1,0);
-
264  // tempy.setVal(0.0);
-
265  // ymom_crse_rhs[lev+1].setVal(0.0);
-
266  // FPr_v[lev].FillSet(tempy , time , null_bc, domain_bcs_type);
-
267  // FPr_v[lev].FillSet(ymom_crse_rhs[lev+1], time+dt_lev, null_bc, domain_bcs_type);
-
268  // MultiFab::Subtract(ymom_crse_rhs[lev+1],tempy,0,0,1,IntVect{0});
-
269  // ymom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
-
270 
-
271  MultiFab temp_state(zmom_crse_rhs[lev+1].boxArray(),zmom_crse_rhs[lev+1].DistributionMap(),1,0);
-
272  InterpFromCoarseLevel(temp_state, IntVect{0}, IntVect{0}, state_old[IntVars::zmom], 0, 0, 1,
-
273  geom[lev], geom[lev+1], refRatio(lev), mapper_f, domain_bcs_type, BCVars::zvel_bc);
-
274  InterpFromCoarseLevel(zmom_crse_rhs[lev+1], IntVect{0}, IntVect{0}, state_new[IntVars::zmom], 0, 0, 1,
+
220  // Register old and new coarse data if we are at a level less than the finest level
+
221  // **************************************************************************************
+
222  if (lev < finest_level)
+
223  {
+
224  if (cf_width > 0) {
+
225  // We must fill the ghost cells of these so that the parallel copy works correctly
+
226  state_old[IntVars::cons].FillBoundary(geom[lev].periodicity());
+
227  state_new[IntVars::cons].FillBoundary(geom[lev].periodicity());
+
228  FPr_c[lev].RegisterCoarseData({&state_old[IntVars::cons], &state_new[IntVars::cons]},
+
229  {time, time + dt_lev});
+
230  }
+
231 
+
232  if (cf_width >= 0) {
+
233  // We must fill the ghost cells of these so that the parallel copy works correctly
+
234  state_old[IntVars::xmom].FillBoundary(geom[lev].periodicity());
+
235  state_new[IntVars::xmom].FillBoundary(geom[lev].periodicity());
+
236  FPr_u[lev].RegisterCoarseData({&state_old[IntVars::xmom], &state_new[IntVars::xmom]},
+
237  {time, time + dt_lev});
+
238 
+
239  state_old[IntVars::ymom].FillBoundary(geom[lev].periodicity());
+
240  state_new[IntVars::ymom].FillBoundary(geom[lev].periodicity());
+
241  FPr_v[lev].RegisterCoarseData({&state_old[IntVars::ymom], &state_new[IntVars::ymom]},
+
242  {time, time + dt_lev});
+
243 
+
244  state_old[IntVars::zmom].FillBoundary(geom[lev].periodicity());
+
245  state_new[IntVars::zmom].FillBoundary(geom[lev].periodicity());
+
246  FPr_w[lev].RegisterCoarseData({&state_old[IntVars::zmom], &state_new[IntVars::zmom]},
+
247  {time, time + dt_lev});
+
248  }
+
249 
+
250  //
+
251  // Now create a MultiFab that holds (S_new - S_old) / dt from the coarse level interpolated
+
252  // on to the coarse/fine boundary at the fine resolution
+
253  //
+
254  Interpolater* mapper_f = &face_cons_linear_interp;
+
255 
+
256  // PhysBCFunctNoOp null_bc;
+
257  // MultiFab tempx(vars_new[lev+1][Vars::xvel].boxArray(),vars_new[lev+1][Vars::xvel].DistributionMap(),1,0);
+
258  // tempx.setVal(0.0);
+
259  // xmom_crse_rhs[lev+1].setVal(0.0);
+
260  // FPr_u[lev].FillSet(tempx , time , null_bc, domain_bcs_type);
+
261  // FPr_u[lev].FillSet(xmom_crse_rhs[lev+1], time+dt_lev, null_bc, domain_bcs_type);
+
262  // MultiFab::Subtract(xmom_crse_rhs[lev+1],tempx,0,0,1,IntVect{0});
+
263  // xmom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
+
264 
+
265  // MultiFab tempy(vars_new[lev+1][Vars::yvel].boxArray(),vars_new[lev+1][Vars::yvel].DistributionMap(),1,0);
+
266  // tempy.setVal(0.0);
+
267  // ymom_crse_rhs[lev+1].setVal(0.0);
+
268  // FPr_v[lev].FillSet(tempy , time , null_bc, domain_bcs_type);
+
269  // FPr_v[lev].FillSet(ymom_crse_rhs[lev+1], time+dt_lev, null_bc, domain_bcs_type);
+
270  // MultiFab::Subtract(ymom_crse_rhs[lev+1],tempy,0,0,1,IntVect{0});
+
271  // ymom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
+
272 
+
273  MultiFab temp_state(zmom_crse_rhs[lev+1].boxArray(),zmom_crse_rhs[lev+1].DistributionMap(),1,0);
+
274  InterpFromCoarseLevel(temp_state, IntVect{0}, IntVect{0}, state_old[IntVars::zmom], 0, 0, 1,
275  geom[lev], geom[lev+1], refRatio(lev), mapper_f, domain_bcs_type, BCVars::zvel_bc);
-
276  MultiFab::Subtract(zmom_crse_rhs[lev+1],temp_state,0,0,1,IntVect{0});
-
277  zmom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
-
278  }
-
279 
-
280  // ***********************************************************************************************
-
281  // Update the time averaged velocities if they are requested
+
276  InterpFromCoarseLevel(zmom_crse_rhs[lev+1], IntVect{0}, IntVect{0}, state_new[IntVars::zmom], 0, 0, 1,
+
277  geom[lev], geom[lev+1], refRatio(lev), mapper_f, domain_bcs_type, BCVars::zvel_bc);
+
278  MultiFab::Subtract(zmom_crse_rhs[lev+1],temp_state,0,0,1,IntVect{0});
+
279  zmom_crse_rhs[lev+1].mult(1.0/dt_lev,0,1,0);
+
280  }
+
281 
282  // ***********************************************************************************************
-
283  if (solverChoice.time_avg_vel) {
-
284  Time_Avg_Vel_atCC(dt[lev], t_avg_cnt[lev], vel_t_avg[lev].get(), U_new, V_new, W_new);
-
285  }
-
286 }
+
283  // Update the time averaged velocities if they are requested
+
284  // ***********************************************************************************************
+
285  if (solverChoice.time_avg_vel) {
+
286  Time_Avg_Vel_atCC(dt[lev], t_avg_cnt[lev], vel_t_avg[lev].get(), U_new, V_new, W_new);
+
287  }
+
288 }
nvars
@ nvars
Definition: ERF_DataStruct.H:66
Rho_comp
#define Rho_comp
Definition: ERF_IndexDefines.H:36
RhoTheta_comp
#define RhoTheta_comp
Definition: ERF_IndexDefines.H:37
@@ -1413,12 +1415,13 @@

Vars::cons
@ cons
Definition: ERF_IndexDefines.H:129

Vars::zvel
@ zvel
Definition: ERF_IndexDefines.H:132
Vars::yvel
@ yvel
Definition: ERF_IndexDefines.H:131
-
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:645
-
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:639
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
-
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:613
-
SolverChoice::windfarm_type
WindFarmType windfarm_type
Definition: ERF_DataStruct.H:624
-
SolverChoice::time_avg_vel
bool time_avg_vel
Definition: ERF_DataStruct.H:610
+
SolverChoice::RhoQr_comp
int RhoQr_comp
Definition: ERF_DataStruct.H:651
+
SolverChoice::RhoQc_comp
int RhoQc_comp
Definition: ERF_DataStruct.H:645
+
SolverChoice::RhoQv_comp
int RhoQv_comp
Definition: ERF_DataStruct.H:644
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628
+
SolverChoice::pert_type
PerturbationType pert_type
Definition: ERF_DataStruct.H:618
+
SolverChoice::windfarm_type
WindFarmType windfarm_type
Definition: ERF_DataStruct.H:629
+
SolverChoice::time_avg_vel
bool time_avg_vel
Definition: ERF_DataStruct.H:615
TurbulentPerturbation::calc_tpi_update
void calc_tpi_update(const int lev, const amrex::Real dt, amrex::MultiFab &mf_xvel, amrex::MultiFab &mf_yvel, amrex::MultiFab &mf_cons)
Definition: ERF_TurbPertStruct.H:184
TurbulentPerturbation::pb_cell
amrex::MultiFab pb_cell
Definition: ERF_TurbPertStruct.H:536
TurbulentPerturbation::apply_tpi
void apply_tpi(const int &lev, const amrex::Box &vbx, const int &comp, const amrex::IndexType &m_ixtype, const amrex::Array4< amrex::Real > &src_arr, const amrex::Array4< amrex::Real const > &pert_cell)
Definition: ERF_TurbPertStruct.H:245
@@ -1897,22 +1900,22 @@

BaseState::r0_comp
@ r0_comp
Definition: ERF_IndexDefines.H:63

DiffChoice
Definition: ERF_DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: ERF_DiffStruct.H:76
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:567
-
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:604
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:565
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:538
-
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:593
-
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:595
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:564
-
SolverChoice::custom_geostrophic_profile
bool custom_geostrophic_profile
Definition: ERF_DataStruct.H:596
-
SolverChoice::substepping_type
amrex::Vector< SubsteppingType > substepping_type
Definition: ERF_DataStruct.H:547
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:616
-
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:594
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:540
-
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:548
-
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:529
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:566
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:539
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: ERF_DataStruct.H:572
+
SolverChoice::use_explicit_most
bool use_explicit_most
Definition: ERF_DataStruct.H:609
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: ERF_DataStruct.H:570
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: ERF_DataStruct.H:543
+
SolverChoice::custom_rhotheta_forcing
bool custom_rhotheta_forcing
Definition: ERF_DataStruct.H:598
+
SolverChoice::custom_w_subsidence
bool custom_w_subsidence
Definition: ERF_DataStruct.H:600
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: ERF_DataStruct.H:569
+
SolverChoice::custom_geostrophic_profile
bool custom_geostrophic_profile
Definition: ERF_DataStruct.H:601
+
SolverChoice::substepping_type
amrex::Vector< SubsteppingType > substepping_type
Definition: ERF_DataStruct.H:552
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: ERF_DataStruct.H:621
+
SolverChoice::custom_moisture_forcing
bool custom_moisture_forcing
Definition: ERF_DataStruct.H:599
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: ERF_DataStruct.H:545
+
SolverChoice::anelastic
amrex::Vector< int > anelastic
Definition: ERF_DataStruct.H:553
+
SolverChoice::terrain_type
static TerrainType terrain_type
Definition: ERF_DataStruct.H:534
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: ERF_DataStruct.H:571
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: ERF_DataStruct.H:544
SpongeChoice
Definition: ERF_SpongeStruct.H:15
SpongeChoice::sponge_type
std::string sponge_type
Definition: ERF_SpongeStruct.H:61
TurbChoice
Definition: ERF_TurbStruct.H:29
@@ -1946,13 +1949,13 @@

- + - - + + @@ -1998,7 +2001,7 @@

12 }

ERF::lsm
LandSurface lsm
Definition: ERF.H:776
LandSurface::Advance
void Advance(const int &lev, const amrex::Real &dt_advance)
Definition: ERF_LandSurface.H:51
-
SolverChoice::lsm_type
LandSurfaceType lsm_type
Definition: ERF_DataStruct.H:626
+
SolverChoice::lsm_type
LandSurfaceType lsm_type
Definition: ERF_DataStruct.H:631
@@ -2186,7 +2189,7 @@

31  }
32 }
ERF::AverageDownTo
void AverageDownTo(int crse_lev, int scomp, int ncomp)
Definition: ERF_AverageDown.cpp:36
-
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:622
+
SolverChoice::coupling_type
CouplingType coupling_type
Definition: ERF_DataStruct.H:627
@@ -2675,7 +2678,7 @@

ERF::stretched_dz_d
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > stretched_dz_d
Definition: ERF.H:846
ERF::ax
amrex::Vector< std::unique_ptr< amrex::MultiFab > > ax
Definition: ERF.H:823
ERF::ay
amrex::Vector< std::unique_ptr< amrex::MultiFab > > ay
Definition: ERF.H:824
-
SolverChoice::terrain_is_flat
static bool terrain_is_flat
Definition: ERF_DataStruct.H:526
+
SolverChoice::terrain_is_flat
static bool terrain_is_flat
Definition: ERF_DataStruct.H:531
@@ -2863,29 +2866,29 @@

-
1892 {
-
1893  auto& fine_new = vars_new[lev];
-
1894  auto& crse_new = vars_new[lev-1];
-
1895  auto& ba_fine = fine_new[Vars::cons].boxArray();
-
1896  auto& ba_crse = crse_new[Vars::cons].boxArray();
-
1897  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
-
1898  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
-
1899 
-
1900  int ncomp = vars_new[lev][Vars::cons].nComp();
+
1894 {
+
1895  auto& fine_new = vars_new[lev];
+
1896  auto& crse_new = vars_new[lev-1];
+
1897  auto& ba_fine = fine_new[Vars::cons].boxArray();
+
1898  auto& ba_crse = crse_new[Vars::cons].boxArray();
+
1899  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
+
1900  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
1901 
-
1902  FPr_c.emplace_back(ba_fine, dm_fine, geom[lev] ,
-
1903  ba_crse, dm_crse, geom[lev-1],
-
1904  -cf_width, -cf_set_width, ncomp, &cell_cons_interp);
-
1905  FPr_u.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
-
1906  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
-
1907  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1908  FPr_v.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
-
1909  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
-
1910  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1911  FPr_w.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
-
1912  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
-
1913  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1914 }
+
1902  int ncomp = vars_new[lev][Vars::cons].nComp();
+
1903 
+
1904  FPr_c.emplace_back(ba_fine, dm_fine, geom[lev] ,
+
1905  ba_crse, dm_crse, geom[lev-1],
+
1906  -cf_width, -cf_set_width, ncomp, &cell_cons_interp);
+
1907  FPr_u.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
+
1908  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
+
1909  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1910  FPr_v.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
+
1911  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
+
1912  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1913  FPr_w.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
+
1914  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
+
1915  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1916 }
ERF::cf_set_width
int cf_set_width
Definition: ERF.H:793
@@ -2973,29 +2976,29 @@

-
1918 {
-
1919  auto& fine_new = vars_new[lev];
-
1920  auto& crse_new = vars_new[lev-1];
-
1921  auto& ba_fine = fine_new[Vars::cons].boxArray();
-
1922  auto& ba_crse = crse_new[Vars::cons].boxArray();
-
1923  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
-
1924  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
-
1925 
-
1926  int ncomp = fine_new[Vars::cons].nComp();
+
1920 {
+
1921  auto& fine_new = vars_new[lev];
+
1922  auto& crse_new = vars_new[lev-1];
+
1923  auto& ba_fine = fine_new[Vars::cons].boxArray();
+
1924  auto& ba_crse = crse_new[Vars::cons].boxArray();
+
1925  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
+
1926  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
1927 
-
1928  FPr_c[lev-1].Define(ba_fine, dm_fine, geom[lev] ,
-
1929  ba_crse, dm_crse, geom[lev-1],
-
1930  -cf_width, -cf_set_width, ncomp, &cell_cons_interp);
-
1931  FPr_u[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
-
1932  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
-
1933  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1934  FPr_v[lev-1].Define(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
-
1935  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
-
1936  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1937  FPr_w[lev-1].Define(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
-
1938  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
-
1939  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
-
1940 }
+
1928  int ncomp = fine_new[Vars::cons].nComp();
+
1929 
+
1930  FPr_c[lev-1].Define(ba_fine, dm_fine, geom[lev] ,
+
1931  ba_crse, dm_crse, geom[lev-1],
+
1932  -cf_width, -cf_set_width, ncomp, &cell_cons_interp);
+
1933  FPr_u[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
+
1934  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
+
1935  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1936  FPr_v[lev-1].Define(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
+
1937  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
+
1938  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1939  FPr_w[lev-1].Define(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
+
1940  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
+
1941  -cf_width, -cf_set_width, 1, &face_cons_linear_interp);
+
1942 }
@@ -4636,8 +4639,8 @@

getRhoThetagivenP
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real getRhoThetagivenP(const amrex::Real p, const amrex::Real qv=0.0)
Definition: ERF_EOS.H:175
getExnergivenP
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real getExnergivenP(const amrex::Real P, const amrex::Real rdOcp)
Definition: ERF_EOS.H:144
MicVar_Kess::pres
@ pres
Definition: ERF_Kessler.H:33
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:578
-
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:576
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:583
+
SolverChoice::gravity
amrex::Real gravity
Definition: ERF_DataStruct.H:581
Here is the call graph for this function:
@@ -4929,7 +4932,7 @@

ERF::thin_yforce
amrex::Vector< std::unique_ptr< amrex::MultiFab > > thin_yforce
Definition: ERF.H:887

ERF::setPlotVariables
void setPlotVariables(const std::string &pp_plot_var_names, amrex::Vector< std::string > &plot_var_names)
Definition: ERF_Plotfile.cpp:17
ERF::m_forest
amrex::Vector< std::unique_ptr< ForestDrag > > m_forest
Definition: ERF.H:1142
-
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:1393
+
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:1395
ERF::ay_new
amrex::Vector< std::unique_ptr< amrex::MultiFab > > ay_new
Definition: ERF.H:836
ERF::z_phys_nd_src
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd_src
Definition: ERF.H:827
ERF::base_state_new
amrex::Vector< amrex::MultiFab > base_state_new
Definition: ERF.H:849
@@ -4966,12 +4969,12 @@

ERF::Hwave
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Hwave
Definition: ERF.H:852
ERF::istep
amrex::Vector< int > istep
Definition: ERF.H:713
ERF::xflux_imask
amrex::Vector< std::unique_ptr< amrex::iMultiFab > > xflux_imask
Definition: ERF.H:880
-
ERF::initializeMicrophysics
void initializeMicrophysics(const int &)
Definition: ERF.cpp:1214
+
ERF::initializeMicrophysics
void initializeMicrophysics(const int &)
Definition: ERF.cpp:1216
LandSurface::ReSize
void ReSize(const int &nlev)
Definition: ERF_LandSurface.H:23
amrex::buildInfoGetGitHash
const char * buildInfoGetGitHash(int i)
-
SolverChoice::dz0
amrex::Real dz0
Definition: ERF_DataStruct.H:583
-
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: ERF_DataStruct.H:581
-
SolverChoice::zsurf
amrex::Real zsurf
Definition: ERF_DataStruct.H:582
+
SolverChoice::dz0
amrex::Real dz0
Definition: ERF_DataStruct.H:588
+
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: ERF_DataStruct.H:586
+
SolverChoice::zsurf
amrex::Real zsurf
Definition: ERF_DataStruct.H:587
Here is the call graph for this function:
@@ -5363,7 +5366,7 @@

ERF::fixed_fast_dt
amrex::Vector< amrex::Real > fixed_fast_dt
Definition: ERF.H:914

ERF::cfl
static amrex::Real cfl
Definition: ERF.H:908
MicVar_Kess::rho
@ rho
Definition: ERF_Kessler.H:30
-
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: ERF_DataStruct.H:545
+
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: ERF_DataStruct.H:550
Here is the call graph for this function:
@@ -5492,7 +5495,7 @@

ERF::WriteCheckpointFile
void WriteCheckpointFile() const
Definition: ERF_Checkpoint.cpp:25

ERF::m_plot_int_2
int m_plot_int_2
Definition: ERF.H:926
ERF::m_r2d
std::unique_ptr< ReadBndryPlanes > m_r2d
Definition: ERF.H:1140
-
ERF::writeNow
bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)
Definition: ERF.cpp:1968
+
ERF::writeNow
bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)
Definition: ERF.cpp:1970
ERF::timeStep
void timeStep(int lev, amrex::Real time, int iteration)
Definition: ERF_TimeStep.cpp:16
ERF::m_plot_per_2
amrex::Real m_plot_per_2
Definition: ERF.H:928
@@ -8077,7 +8080,7 @@

AdvChoice::zero_yflux
amrex::Vector< amrex::IntVect > zero_yflux
Definition: ERF_AdvStruct.H:300
AdvChoice::zero_xflux
amrex::Vector< amrex::IntVect > zero_xflux
Definition: ERF_AdvStruct.H:299
AdvChoice::zero_zflux
amrex::Vector< amrex::IntVect > zero_zflux
Definition: ERF_AdvStruct.H:301
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:537
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: ERF_DataStruct.H:542
@@ -8106,114 +8109,114 @@

-
1282 {
-
1283  // Map the words in the inputs file to BC types, then translate
-
1284  // those types into what they mean for each variable
-
1285  // This must be called before initHSE (where the base state is initialized)
-
1286  if (lev == 0 && init_type != InitType::Ideal) {
-
1287  init_bcs();
-
1288  }
-
1289 
-
1290  t_new[lev] = time;
-
1291  t_old[lev] = time - 1.e200;
-
1292 
-
1293  auto& lev_new = vars_new[lev];
-
1294  auto& lev_old = vars_old[lev];
-
1295 
-
1296  // Loop over grids at this level to initialize our grid data
-
1297  lev_new[Vars::cons].setVal(0.0); lev_old[Vars::cons].setVal(0.0);
-
1298  lev_new[Vars::xvel].setVal(0.0); lev_old[Vars::xvel].setVal(0.0);
-
1299  lev_new[Vars::yvel].setVal(0.0); lev_old[Vars::yvel].setVal(0.0);
-
1300  lev_new[Vars::zvel].setVal(0.0); lev_old[Vars::zvel].setVal(0.0);
-
1301 
-
1302  // Initialize background flow (optional)
-
1303  if (init_type == InitType::Input_Sounding) {
-
1304  // The base state is initialized by integrating vertically through the
-
1305  // input sounding, if the init_sounding_ideal flag is set; otherwise
-
1306  // it is set by initHSE()
-
1307 
-
1308  // The physbc's need the terrain but are needed for initHSE
-
1309  // We have already made the terrain in the call to init_zphys
-
1310  // in MakeNewLevelFromScratch
-
1311  make_physbcs(lev);
-
1312 
-
1313  // Now init the base state and the data itself
-
1314  init_from_input_sounding(lev);
-
1315 
-
1316  if (init_sounding_ideal) {
-
1317  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(solverChoice.use_gravity,
-
1318  "Gravity should be on to be consistent with sounding initialization.");
-
1319  } else {
-
1320  initHSE();
-
1321  }
-
1322 
-
1323 #ifdef ERF_USE_NETCDF
-
1324  } else if (init_type == InitType::Ideal || init_type == InitType::Real) {
-
1325  // The base state is initialized from WRF wrfinput data, output by
-
1326  // ideal.exe or real.exe
-
1327  init_from_wrfinput(lev);
-
1328 
-
1329  // The physbc's need the terrain but are needed for initHSE
-
1330  if (init_type == InitType::Ideal) {
-
1331  make_physbcs(lev);
-
1332  initHSE(lev);
-
1333  }
-
1334 
-
1335  } else if (init_type == InitType::Metgrid) {
-
1336  // The base state is initialized from data output by WPS metgrid;
-
1337  // we will rebalance after interpolation
-
1338  init_from_metgrid(lev);
-
1339 #endif
-
1340  } else if (init_type == InitType::Uniform) {
-
1341  // Initialize a uniform background field and base state based on the
-
1342  // problem-specified reference density and temperature
-
1343 
-
1344  // The physbc's need the terrain but are needed for initHSE
-
1345  make_physbcs(lev);
-
1346 
-
1347  init_uniform(lev);
-
1348  initHSE(lev);
-
1349  } else {
-
1350  // No background flow initialization specified, initialize the
-
1351  // background field to be equal to the base state, calculated from the
-
1352  // problem-specific erf_init_dens_hse
-
1353 
-
1354  // The bc's need the terrain but are needed for initHSE
-
1355  make_physbcs(lev);
-
1356 
-
1357  // We will initialize the state from the background state so must set that first
-
1358  initHSE(lev);
-
1359  init_from_hse(lev);
-
1360  }
-
1361 
-
1362  // Add problem-specific flow features
-
1363  //
-
1364  // Notes:
-
1365  // - This calls init_custom_pert that is defined for each problem
-
1366  // - This may modify the base state
-
1367  // - The fields set by init_custom_pert are **perturbations** to the
-
1368  // background flow set based on init_type
-
1369  init_custom(lev);
-
1370 
-
1371  // Ensure that the face-based data are the same on both sides of a periodic domain.
-
1372  // The data associated with the lower grid ID is considered the correct value.
-
1373  lev_new[Vars::xvel].OverrideSync(geom[lev].periodicity());
-
1374  lev_new[Vars::yvel].OverrideSync(geom[lev].periodicity());
-
1375  lev_new[Vars::zvel].OverrideSync(geom[lev].periodicity());
-
1376 
-
1377  if(solverChoice.spongeChoice.sponge_type == "input_sponge"){
-
1378  input_sponge(lev);
-
1379  }
-
1380 
-
1381  // Initialize turbulent perturbation
-
1382  if (solverChoice.pert_type == PerturbationType::Source ||
-
1383  solverChoice.pert_type == PerturbationType::Direct) {
-
1384  if (lev == 0) {
-
1385  turbPert_update(lev, 0.);
-
1386  turbPert_amplitude(lev);
-
1387  }
-
1388  }
-
1389 }
+
1284 {
+
1285  // Map the words in the inputs file to BC types, then translate
+
1286  // those types into what they mean for each variable
+
1287  // This must be called before initHSE (where the base state is initialized)
+
1288  if (lev == 0 && init_type != InitType::Ideal) {
+
1289  init_bcs();
+
1290  }
+
1291 
+
1292  t_new[lev] = time;
+
1293  t_old[lev] = time - 1.e200;
+
1294 
+
1295  auto& lev_new = vars_new[lev];
+
1296  auto& lev_old = vars_old[lev];
+
1297 
+
1298  // Loop over grids at this level to initialize our grid data
+
1299  lev_new[Vars::cons].setVal(0.0); lev_old[Vars::cons].setVal(0.0);
+
1300  lev_new[Vars::xvel].setVal(0.0); lev_old[Vars::xvel].setVal(0.0);
+
1301  lev_new[Vars::yvel].setVal(0.0); lev_old[Vars::yvel].setVal(0.0);
+
1302  lev_new[Vars::zvel].setVal(0.0); lev_old[Vars::zvel].setVal(0.0);
+
1303 
+
1304  // Initialize background flow (optional)
+
1305  if (init_type == InitType::Input_Sounding) {
+
1306  // The base state is initialized by integrating vertically through the
+
1307  // input sounding, if the init_sounding_ideal flag is set; otherwise
+
1308  // it is set by initHSE()
+
1309 
+
1310  // The physbc's need the terrain but are needed for initHSE
+
1311  // We have already made the terrain in the call to init_zphys
+
1312  // in MakeNewLevelFromScratch
+
1313  make_physbcs(lev);
+
1314 
+
1315  // Now init the base state and the data itself
+
1316  init_from_input_sounding(lev);
+
1317 
+
1318  if (init_sounding_ideal) {
+
1319  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(solverChoice.use_gravity,
+
1320  "Gravity should be on to be consistent with sounding initialization.");
+
1321  } else {
+
1322  initHSE();
+
1323  }
+
1324 
+
1325 #ifdef ERF_USE_NETCDF
+
1326  } else if (init_type == InitType::Ideal || init_type == InitType::Real) {
+
1327  // The base state is initialized from WRF wrfinput data, output by
+
1328  // ideal.exe or real.exe
+
1329  init_from_wrfinput(lev);
+
1330 
+
1331  // The physbc's need the terrain but are needed for initHSE
+
1332  if (init_type == InitType::Ideal) {
+
1333  make_physbcs(lev);
+
1334  initHSE(lev);
+
1335  }
+
1336 
+
1337  } else if (init_type == InitType::Metgrid) {
+
1338  // The base state is initialized from data output by WPS metgrid;
+
1339  // we will rebalance after interpolation
+
1340  init_from_metgrid(lev);
+
1341 #endif
+
1342  } else if (init_type == InitType::Uniform) {
+
1343  // Initialize a uniform background field and base state based on the
+
1344  // problem-specified reference density and temperature
+
1345 
+
1346  // The physbc's need the terrain but are needed for initHSE
+
1347  make_physbcs(lev);
+
1348 
+
1349  init_uniform(lev);
+
1350  initHSE(lev);
+
1351  } else {
+
1352  // No background flow initialization specified, initialize the
+
1353  // background field to be equal to the base state, calculated from the
+
1354  // problem-specific erf_init_dens_hse
+
1355 
+
1356  // The bc's need the terrain but are needed for initHSE
+
1357  make_physbcs(lev);
+
1358 
+
1359  // We will initialize the state from the background state so must set that first
+
1360  initHSE(lev);
+
1361  init_from_hse(lev);
+
1362  }
+
1363 
+
1364  // Add problem-specific flow features
+
1365  //
+
1366  // Notes:
+
1367  // - This calls init_custom_pert that is defined for each problem
+
1368  // - This may modify the base state
+
1369  // - The fields set by init_custom_pert are **perturbations** to the
+
1370  // background flow set based on init_type
+
1371  init_custom(lev);
+
1372 
+
1373  // Ensure that the face-based data are the same on both sides of a periodic domain.
+
1374  // The data associated with the lower grid ID is considered the correct value.
+
1375  lev_new[Vars::xvel].OverrideSync(geom[lev].periodicity());
+
1376  lev_new[Vars::yvel].OverrideSync(geom[lev].periodicity());
+
1377  lev_new[Vars::zvel].OverrideSync(geom[lev].periodicity());
+
1378 
+
1379  if(solverChoice.spongeChoice.sponge_type == "input_sponge"){
+
1380  input_sponge(lev);
+
1381  }
+
1382 
+
1383  // Initialize turbulent perturbation
+
1384  if (solverChoice.pert_type == PerturbationType::Source ||
+
1385  solverChoice.pert_type == PerturbationType::Direct) {
+
1386  if (lev == 0) {
+
1387  turbPert_update(lev, 0.);
+
1388  turbPert_amplitude(lev);
+
1389  }
+
1390  }
+
1391 }
ERF::init_from_input_sounding
void init_from_input_sounding(int lev)
Definition: ERF_InitFromInputSounding.cpp:50
ERF::init_type
static InitType init_type
Definition: ERF.H:1031
ERF::init_custom
void init_custom(int lev)
Definition: ERF_InitCustom.cpp:26
@@ -8225,7 +8228,7 @@

ERF::make_physbcs
void make_physbcs(int lev)
Definition: ERF_MakeNewArrays.cpp:550

ERF::init_uniform
void init_uniform(int lev)
Definition: ERF_InitUniform.cpp:17
ERF::turbPert_amplitude
void turbPert_amplitude(const int lev)
Definition: ERF_InitTurbPert.cpp:41
-
SolverChoice::use_gravity
bool use_gravity
Definition: ERF_DataStruct.H:560
+
SolverChoice::use_gravity
bool use_gravity
Definition: ERF_DataStruct.H:565
@@ -8629,7 +8632,7 @@

NDRY
#define NDRY
Definition: ERF_IndexDefines.H:13
ERF::ComputeGhostCells
static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &advChoice, bool use_num_diff)
Definition: ERF.H:1159
BaseState::num_comps
@ num_comps
Definition: ERF_IndexDefines.H:67
-
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: ERF_DataStruct.H:555
+
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: ERF_DataStruct.H:560
TurbulentPerturbation::init_tpi
void init_tpi(const int lev, const amrex::IntVect &nx, const amrex::GpuArray< amrex::Real, 3 > dx, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm, const int ngrow_state)
Definition: ERF_TurbPertStruct.H:29
@@ -9241,153 +9244,155 @@

1061  // we don't want to call update_fluxes multiple times because
1062  // it will change u* and theta* from their previous values
1063  m_most->update_pblh(lev, vars_new, z_phys_cc[lev].get(),
-
1064  solverChoice.RhoQv_comp, solverChoice.RhoQr_comp);
-
1065  m_most->update_fluxes(lev, time);
-
1066  }
-
1067  }
-
1068  }
-
1069 
-
1070  // Update micro vars before first plot file
-
1071  if (solverChoice.moisture_type != MoistureType::None) {
-
1072  for (int lev = 0; lev <= finest_level; ++lev) micro->Update_Micro_Vars_Lev(lev, vars_new[lev][Vars::cons]);
-
1073  }
-
1074 
-
1075  // Fill time averaged velocities before first plot file
-
1076  if (solverChoice.time_avg_vel) {
-
1077  for (int lev = 0; lev <= finest_level; ++lev) {
-
1078  Time_Avg_Vel_atCC(dt[lev], t_avg_cnt[lev], vel_t_avg[lev].get(),
-
1079  vars_new[lev][Vars::xvel],
-
1080  vars_new[lev][Vars::yvel],
-
1081  vars_new[lev][Vars::zvel]);
-
1082  }
-
1083  }
-
1084 
-
1085  // check for additional plotting variables that are available after particle containers
-
1086  // are setup.
-
1087  const std::string& pv1 = "plot_vars_1"; appendPlotVariables(pv1,plot_var_names_1);
-
1088  const std::string& pv2 = "plot_vars_2"; appendPlotVariables(pv2,plot_var_names_2);
-
1089 
-
1090  if ( restart_chkfile.empty() && (m_check_int > 0 || m_check_per > 0.) )
-
1091  {
-
1092 #ifdef ERF_USE_NETCDF
-
1093  if (check_type == "netcdf") {
-
1094  WriteNCCheckpointFile();
-
1095  }
-
1096 #endif
-
1097  if (check_type == "native") {
-
1098  WriteCheckpointFile();
-
1099  }
-
1100  last_check_file_step = 0;
-
1101  }
-
1102 
-
1103  if ( (restart_chkfile.empty()) ||
-
1104  (!restart_chkfile.empty() && plot_file_on_restart) )
-
1105  {
-
1106  if (m_plot_int_1 > 0 || m_plot_per_1 > 0.)
-
1107  {
-
1108  WritePlotFile(1,plotfile_type_1,plot_var_names_1);
-
1109  last_plot_file_step_1 = istep[0];
-
1110  }
-
1111  if (m_plot_int_2 > 0 || m_plot_per_2 > 0.)
-
1112  {
-
1113  WritePlotFile(2,plotfile_type_2,plot_var_names_2);
-
1114  last_plot_file_step_2 = istep[0];
-
1115  }
-
1116  }
-
1117 
-
1118  // Set these up here because we need to know which MPI rank "cell" is on...
-
1119  if (pp.contains("data_log"))
-
1120  {
-
1121  int num_datalogs = pp.countval("data_log");
-
1122  datalog.resize(num_datalogs);
-
1123  datalogname.resize(num_datalogs);
-
1124  pp.queryarr("data_log",datalogname,0,num_datalogs);
-
1125  for (int i = 0; i < num_datalogs; i++)
-
1126  setRecordDataInfo(i,datalogname[i]);
-
1127  }
-
1128 
-
1129  if (restart_chkfile.empty() && profile_int > 0) {
-
1130  if (destag_profiles) {
-
1131  // all variables cell-centered
-
1132  write_1D_profiles(t_new[0]);
-
1133  } else {
-
1134  // some variables staggered
-
1135  write_1D_profiles_stag(t_new[0]);
-
1136  }
-
1137  }
-
1138 
-
1139  if (pp.contains("sample_point_log") && pp.contains("sample_point"))
-
1140  {
-
1141  int lev = 0;
-
1142 
-
1143  int num_samplepts = pp.countval("sample_point") / AMREX_SPACEDIM;
-
1144  if (num_samplepts > 0) {
-
1145  Vector<int> index; index.resize(num_samplepts*AMREX_SPACEDIM);
-
1146  samplepoint.resize(num_samplepts);
-
1147 
-
1148  pp.queryarr("sample_point",index,0,num_samplepts*AMREX_SPACEDIM);
-
1149  for (int i = 0; i < num_samplepts; i++) {
-
1150  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
-
1151  samplepoint[i] = iv;
-
1152  }
-
1153  }
-
1154 
-
1155  int num_sampleptlogs = pp.countval("sample_point_log");
-
1156  AMREX_ALWAYS_ASSERT(num_sampleptlogs == num_samplepts);
-
1157  if (num_sampleptlogs > 0) {
-
1158  sampleptlog.resize(num_sampleptlogs);
-
1159  sampleptlogname.resize(num_sampleptlogs);
-
1160  pp.queryarr("sample_point_log",sampleptlogname,0,num_sampleptlogs);
-
1161 
-
1162  for (int i = 0; i < num_sampleptlogs; i++) {
-
1163  setRecordSamplePointInfo(i,lev,samplepoint[i],sampleptlogname[i]);
-
1164  }
-
1165  }
-
1166 
-
1167  }
+
1064  solverChoice.RhoQv_comp,
+
1065  solverChoice.RhoQc_comp,
+
1066  solverChoice.RhoQr_comp);
+
1067  m_most->update_fluxes(lev, time);
+
1068  }
+
1069  }
+
1070  }
+
1071 
+
1072  // Update micro vars before first plot file
+
1073  if (solverChoice.moisture_type != MoistureType::None) {
+
1074  for (int lev = 0; lev <= finest_level; ++lev) micro->Update_Micro_Vars_Lev(lev, vars_new[lev][Vars::cons]);
+
1075  }
+
1076 
+
1077  // Fill time averaged velocities before first plot file
+
1078  if (solverChoice.time_avg_vel) {
+
1079  for (int lev = 0; lev <= finest_level; ++lev) {
+
1080  Time_Avg_Vel_atCC(dt[lev], t_avg_cnt[lev], vel_t_avg[lev].get(),
+
1081  vars_new[lev][Vars::xvel],
+
1082  vars_new[lev][Vars::yvel],
+
1083  vars_new[lev][Vars::zvel]);
+
1084  }
+
1085  }
+
1086 
+
1087  // check for additional plotting variables that are available after particle containers
+
1088  // are setup.
+
1089  const std::string& pv1 = "plot_vars_1"; appendPlotVariables(pv1,plot_var_names_1);
+
1090  const std::string& pv2 = "plot_vars_2"; appendPlotVariables(pv2,plot_var_names_2);
+
1091 
+
1092  if ( restart_chkfile.empty() && (m_check_int > 0 || m_check_per > 0.) )
+
1093  {
+
1094 #ifdef ERF_USE_NETCDF
+
1095  if (check_type == "netcdf") {
+
1096  WriteNCCheckpointFile();
+
1097  }
+
1098 #endif
+
1099  if (check_type == "native") {
+
1100  WriteCheckpointFile();
+
1101  }
+
1102  last_check_file_step = 0;
+
1103  }
+
1104 
+
1105  if ( (restart_chkfile.empty()) ||
+
1106  (!restart_chkfile.empty() && plot_file_on_restart) )
+
1107  {
+
1108  if (m_plot_int_1 > 0 || m_plot_per_1 > 0.)
+
1109  {
+
1110  WritePlotFile(1,plotfile_type_1,plot_var_names_1);
+
1111  last_plot_file_step_1 = istep[0];
+
1112  }
+
1113  if (m_plot_int_2 > 0 || m_plot_per_2 > 0.)
+
1114  {
+
1115  WritePlotFile(2,plotfile_type_2,plot_var_names_2);
+
1116  last_plot_file_step_2 = istep[0];
+
1117  }
+
1118  }
+
1119 
+
1120  // Set these up here because we need to know which MPI rank "cell" is on...
+
1121  if (pp.contains("data_log"))
+
1122  {
+
1123  int num_datalogs = pp.countval("data_log");
+
1124  datalog.resize(num_datalogs);
+
1125  datalogname.resize(num_datalogs);
+
1126  pp.queryarr("data_log",datalogname,0,num_datalogs);
+
1127  for (int i = 0; i < num_datalogs; i++)
+
1128  setRecordDataInfo(i,datalogname[i]);
+
1129  }
+
1130 
+
1131  if (restart_chkfile.empty() && profile_int > 0) {
+
1132  if (destag_profiles) {
+
1133  // all variables cell-centered
+
1134  write_1D_profiles(t_new[0]);
+
1135  } else {
+
1136  // some variables staggered
+
1137  write_1D_profiles_stag(t_new[0]);
+
1138  }
+
1139  }
+
1140 
+
1141  if (pp.contains("sample_point_log") && pp.contains("sample_point"))
+
1142  {
+
1143  int lev = 0;
+
1144 
+
1145  int num_samplepts = pp.countval("sample_point") / AMREX_SPACEDIM;
+
1146  if (num_samplepts > 0) {
+
1147  Vector<int> index; index.resize(num_samplepts*AMREX_SPACEDIM);
+
1148  samplepoint.resize(num_samplepts);
+
1149 
+
1150  pp.queryarr("sample_point",index,0,num_samplepts*AMREX_SPACEDIM);
+
1151  for (int i = 0; i < num_samplepts; i++) {
+
1152  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
+
1153  samplepoint[i] = iv;
+
1154  }
+
1155  }
+
1156 
+
1157  int num_sampleptlogs = pp.countval("sample_point_log");
+
1158  AMREX_ALWAYS_ASSERT(num_sampleptlogs == num_samplepts);
+
1159  if (num_sampleptlogs > 0) {
+
1160  sampleptlog.resize(num_sampleptlogs);
+
1161  sampleptlogname.resize(num_sampleptlogs);
+
1162  pp.queryarr("sample_point_log",sampleptlogname,0,num_sampleptlogs);
+
1163 
+
1164  for (int i = 0; i < num_sampleptlogs; i++) {
+
1165  setRecordSamplePointInfo(i,lev,samplepoint[i],sampleptlogname[i]);
+
1166  }
+
1167  }
1168 
-
1169  if (pp.contains("sample_line_log") && pp.contains("sample_line"))
-
1170  {
-
1171  int lev = 0;
-
1172 
-
1173  int num_samplelines = pp.countval("sample_line") / AMREX_SPACEDIM;
-
1174  if (num_samplelines > 0) {
-
1175  Vector<int> index; index.resize(num_samplelines*AMREX_SPACEDIM);
-
1176  sampleline.resize(num_samplelines);
-
1177 
-
1178  pp.queryarr("sample_line",index,0,num_samplelines*AMREX_SPACEDIM);
-
1179  for (int i = 0; i < num_samplelines; i++) {
-
1180  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
-
1181  sampleline[i] = iv;
-
1182  }
-
1183  }
-
1184 
-
1185  int num_samplelinelogs = pp.countval("sample_line_log");
-
1186  AMREX_ALWAYS_ASSERT(num_samplelinelogs == num_samplelines);
-
1187  if (num_samplelinelogs > 0) {
-
1188  samplelinelog.resize(num_samplelinelogs);
-
1189  samplelinelogname.resize(num_samplelinelogs);
-
1190  pp.queryarr("sample_line_log",samplelinelogname,0,num_samplelinelogs);
-
1191 
-
1192  for (int i = 0; i < num_samplelinelogs; i++) {
-
1193  setRecordSampleLineInfo(i,lev,sampleline[i],samplelinelogname[i]);
-
1194  }
-
1195  }
-
1196 
-
1197  }
+
1169  }
+
1170 
+
1171  if (pp.contains("sample_line_log") && pp.contains("sample_line"))
+
1172  {
+
1173  int lev = 0;
+
1174 
+
1175  int num_samplelines = pp.countval("sample_line") / AMREX_SPACEDIM;
+
1176  if (num_samplelines > 0) {
+
1177  Vector<int> index; index.resize(num_samplelines*AMREX_SPACEDIM);
+
1178  sampleline.resize(num_samplelines);
+
1179 
+
1180  pp.queryarr("sample_line",index,0,num_samplelines*AMREX_SPACEDIM);
+
1181  for (int i = 0; i < num_samplelines; i++) {
+
1182  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
+
1183  sampleline[i] = iv;
+
1184  }
+
1185  }
+
1186 
+
1187  int num_samplelinelogs = pp.countval("sample_line_log");
+
1188  AMREX_ALWAYS_ASSERT(num_samplelinelogs == num_samplelines);
+
1189  if (num_samplelinelogs > 0) {
+
1190  samplelinelog.resize(num_samplelinelogs);
+
1191  samplelinelogname.resize(num_samplelinelogs);
+
1192  pp.queryarr("sample_line_log",samplelinelogname,0,num_samplelinelogs);
+
1193 
+
1194  for (int i = 0; i < num_samplelinelogs; i++) {
+
1195  setRecordSampleLineInfo(i,lev,sampleline[i],samplelinelogname[i]);
+
1196  }
+
1197  }
1198 
-
1199  // Create object to do line and plane sampling if needed
-
1200  bool do_line = false; bool do_plane = false;
-
1201  pp.query("do_line_sampling",do_line); pp.query("do_plane_sampling",do_plane);
-
1202  if (do_line || do_plane) { data_sampler = std::make_unique<SampleData>(do_line, do_plane); }
-
1203 
-
1204 #ifdef ERF_USE_EB
-
1205  bool write_eb_surface = false;
-
1206  pp.query("write_eb_surface", write_eb_surface);
-
1207  if (write_eb_surface) WriteMyEBSurface();
-
1208 #endif
-
1209 
-
1210 }
+
1199  }
+
1200 
+
1201  // Create object to do line and plane sampling if needed
+
1202  bool do_line = false; bool do_plane = false;
+
1203  pp.query("do_line_sampling",do_line); pp.query("do_plane_sampling",do_plane);
+
1204  if (do_line || do_plane) { data_sampler = std::make_unique<SampleData>(do_line, do_plane); }
+
1205 
+
1206 #ifdef ERF_USE_EB
+
1207  bool write_eb_surface = false;
+
1208  pp.query("write_eb_surface", write_eb_surface);
+
1209  if (write_eb_surface) WriteMyEBSurface();
+
1210 #endif
+
1211 
+
1212 }
ERF::initRayleigh
void initRayleigh()
Initialize Rayleigh damping profiles.
Definition: ERF_InitRayleigh.cpp:14
ERF::samplelinelogname
amrex::Vector< std::string > samplelinelogname
Definition: ERF.H:1358
ERF::setRayleighRefFromSounding
void setRayleighRefFromSounding(bool restarting)
Set Rayleigh mean profiles from input sounding.
Definition: ERF_InitRayleigh.cpp:55
@@ -9399,7 +9404,7 @@

ERF::samplelinelog
amrex::Vector< std::unique_ptr< std::fstream > > samplelinelog
Definition: ERF.H:1357
ERF::sum_interval
static int sum_interval
Definition: ERF.H:1023
ERF::pert_interval
static int pert_interval
Definition: ERF.H:1024
-
ERF::restart
void restart()
Definition: ERF.cpp:1250
+
ERF::restart
void restart()
Definition: ERF.cpp:1252
ERF::ReadCheckpointFileMOST
void ReadCheckpointFileMOST()
Definition: ERF_Checkpoint.cpp:627
ERF::write_1D_profiles
void write_1D_profiles(amrex::Real time)
Definition: ERF_Write1DProfiles.cpp:15
ERF::profile_int
int profile_int
Definition: ERF.H:934
@@ -9419,16 +9424,16 @@

ERF::is_it_time_for_action
static bool is_it_time_for_action(int nstep, amrex::Real time, amrex::Real dt, int action_interval, amrex::Real action_per)
Definition: ERF_WriteScalarProfiles.cpp:466
ERF::project_velocities
void project_velocities(int lev, amrex::Real dt, amrex::Vector< amrex::MultiFab > &vars, amrex::MultiFab &p)
Definition: ERF_PoissonSolve.cpp:10
ERF::plot_file_on_restart
int plot_file_on_restart
Definition: ERF.H:894
-
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1891
+
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1893
ERF::setRecordSampleLineInfo
void setRecordSampleLineInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:1328
ERF::setSpongeRefFromSounding
void setSpongeRefFromSounding(bool restarting)
Set sponge mean profiles from input sounding.
Definition: ERF_InitSponge.cpp:65
ERF::samplepoint
amrex::Vector< amrex::IntVect > samplepoint
Definition: ERF.H:1355
ERF::setRecordSamplePointInfo
void setRecordSamplePointInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:1311
Microphysics::modelType
static MoistureModelType modelType(const MoistureType a_moisture_type)
query if a specified moisture model is Eulerian or Lagrangian
Definition: ERF_Microphysics.H:64
-
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:632
-
SolverChoice::project_initial_velocity
bool project_initial_velocity
Definition: ERF_DataStruct.H:585
-
SolverChoice::abl_geo_wind_table
std::string abl_geo_wind_table
Definition: ERF_DataStruct.H:631
-
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:607
+
SolverChoice::have_geo_wind_profile
bool have_geo_wind_profile
Definition: ERF_DataStruct.H:637
+
SolverChoice::project_initial_velocity
bool project_initial_velocity
Definition: ERF_DataStruct.H:590
+
SolverChoice::abl_geo_wind_table
std::string abl_geo_wind_table
Definition: ERF_DataStruct.H:636
+
SolverChoice::use_rotate_most
bool use_rotate_most
Definition: ERF_DataStruct.H:612
TurbulentPerturbation::debug
void debug(amrex::Real)
Definition: ERF_TurbPertStruct.H:508
Here is the call graph for this function:
@@ -9663,7 +9668,7 @@

127 }
ChopGrids2D
void ChopGrids2D(BoxArray &ba, const Box &domain, int target_size)
Definition: ERF_ChopGrids.cpp:21
ERF::erf_enforce_hse
void erf_enforce_hse(int lev, amrex::MultiFab &dens, amrex::MultiFab &pres, amrex::MultiFab &pi, amrex::MultiFab &th, std::unique_ptr< amrex::MultiFab > &z_cc)
Definition: ERF_Init1D.cpp:149
-
SolverChoice::use_moist_background
bool use_moist_background
Definition: ERF_DataStruct.H:638
+
SolverChoice::use_moist_background
bool use_moist_background
Definition: ERF_DataStruct.H:643
Here is the call graph for this function:
@@ -9827,30 +9832,30 @@

1215 {
-
1216  if (Microphysics::modelType(solverChoice.moisture_type) == MoistureModelType::Eulerian) {
-
1217 
-
1218  micro = std::make_unique<EulerianMicrophysics>(a_nlevsmax, solverChoice.moisture_type);
+
1217 {
+
1218  if (Microphysics::modelType(solverChoice.moisture_type) == MoistureModelType::Eulerian) {
1219 
-
1220  } else if (Microphysics::modelType(solverChoice.moisture_type) == MoistureModelType::Lagrangian) {
-
1221 #ifdef ERF_USE_PARTICLES
-
1222 
-
1223  micro = std::make_unique<LagrangianMicrophysics>(a_nlevsmax, solverChoice.moisture_type);
-
1224  /* Lagrangian microphysics models will have a particle container; it needs to be added
-
1225  to ERF::particleData */
-
1226  const auto& pc_name( dynamic_cast<LagrangianMicrophysics&>(*micro).getName() );
-
1227  /* The particle container has not yet been constructed and initialized, so just add
-
1228  its name here for now (so that functions to set plotting variables can see it). */
-
1229  particleData.addName( pc_name );
-
1230 
-
1231 #else
-
1232  Abort("Lagrangian microphysics can be used when compiled with ERF_USE_PARTICLES");
-
1233 #endif
-
1234  }
-
1235 
-
1236  qmoist.resize(a_nlevsmax);
-
1237  return;
-
1238 }
+
1220  micro = std::make_unique<EulerianMicrophysics>(a_nlevsmax, solverChoice.moisture_type);
+
1221 
+
1222  } else if (Microphysics::modelType(solverChoice.moisture_type) == MoistureModelType::Lagrangian) {
+
1223 #ifdef ERF_USE_PARTICLES
+
1224 
+
1225  micro = std::make_unique<LagrangianMicrophysics>(a_nlevsmax, solverChoice.moisture_type);
+
1226  /* Lagrangian microphysics models will have a particle container; it needs to be added
+
1227  to ERF::particleData */
+
1228  const auto& pc_name( dynamic_cast<LagrangianMicrophysics&>(*micro).getName() );
+
1229  /* The particle container has not yet been constructed and initialized, so just add
+
1230  its name here for now (so that functions to set plotting variables can see it). */
+
1231  particleData.addName( pc_name );
+
1232 
+
1233 #else
+
1234  Abort("Lagrangian microphysics can be used when compiled with ERF_USE_PARTICLES");
+
1235 #endif
+
1236  }
+
1237 
+
1238  qmoist.resize(a_nlevsmax);
+
1239  return;
+
1240 }
ERF::qmoist
amrex::Vector< amrex::Vector< amrex::MultiFab * > > qmoist
Definition: ERF.H:761
Here is the call graph for this function:
@@ -9921,8 +9926,8 @@

44  }

45 }
ERF::h_rayleigh_ptrs
amrex::Vector< amrex::Vector< amrex::Vector< amrex::Real > > > h_rayleigh_ptrs
Definition: ERF.H:1114
-
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:569
-
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:570
+
SolverChoice::rayleigh_zdamp
amrex::Real rayleigh_zdamp
Definition: ERF_DataStruct.H:574
+
SolverChoice::rayleigh_ztop
amrex::Real rayleigh_ztop
Definition: ERF_DataStruct.H:575
@@ -10172,49 +10177,49 @@

-
1846 {
-
1847  // Get the number of cells in z at level 0
-
1848  int dir_z = AMREX_SPACEDIM-1;
-
1849  auto domain = geom[0].Domain();
-
1850  int size_z = domain.length(dir_z);
-
1851  int start_z = domain.smallEnd()[dir_z];
-
1852  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
-
1853 
-
1854  // resize the level 0 horizontal average vectors
-
1855  h_havg.resize(size_z, 0.0_rt);
-
1856 
-
1857  // Get the cell centered data and construct sums
-
1858 #ifdef _OPENMP
-
1859 #pragma omp parallel if (Gpu::notInLaunchRegion())
-
1860 #endif
-
1861  for (MFIter mfi(S); mfi.isValid(); ++mfi) {
-
1862  const Box& box = mfi.validbox();
-
1863  const IntVect& se = box.smallEnd();
-
1864  const IntVect& be = box.bigEnd();
-
1865 
-
1866  auto fab_arr = S[mfi].array();
+
1848 {
+
1849  // Get the number of cells in z at level 0
+
1850  int dir_z = AMREX_SPACEDIM-1;
+
1851  auto domain = geom[0].Domain();
+
1852  int size_z = domain.length(dir_z);
+
1853  int start_z = domain.smallEnd()[dir_z];
+
1854  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
+
1855 
+
1856  // resize the level 0 horizontal average vectors
+
1857  h_havg.resize(size_z, 0.0_rt);
+
1858 
+
1859  // Get the cell centered data and construct sums
+
1860 #ifdef _OPENMP
+
1861 #pragma omp parallel if (Gpu::notInLaunchRegion())
+
1862 #endif
+
1863  for (MFIter mfi(S); mfi.isValid(); ++mfi) {
+
1864  const Box& box = mfi.validbox();
+
1865  const IntVect& se = box.smallEnd();
+
1866  const IntVect& be = box.bigEnd();
1867 
-
1868  FArrayBox fab_reduce(box, 1, The_Async_Arena());
-
1869  auto arr_reduce = fab_reduce.array();
-
1870 
-
1871  ParallelFor(box, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
1872  arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);
-
1873  });
-
1874 
-
1875  for (int k=se[dir_z]; k <= be[dir_z]; ++k) {
-
1876  Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);
-
1877  h_havg[k-start_z] += fab_reduce.sum<RunOn::Device>(kbox,0);
-
1878  }
-
1879  }
-
1880 
-
1881  // combine sums from different MPI ranks
-
1882  ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());
-
1883 
-
1884  // divide by the total number of cells we are averaging over
-
1885  for (int k = 0; k < size_z; ++k) {
-
1886  h_havg[k] /= area_z;
-
1887  }
-
1888 }
+
1868  auto fab_arr = S[mfi].array();
+
1869 
+
1870  FArrayBox fab_reduce(box, 1, The_Async_Arena());
+
1871  auto arr_reduce = fab_reduce.array();
+
1872 
+
1873  ParallelFor(box, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
1874  arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);
+
1875  });
+
1876 
+
1877  for (int k=se[dir_z]; k <= be[dir_z]; ++k) {
+
1878  Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);
+
1879  h_havg[k-start_z] += fab_reduce.sum<RunOn::Device>(kbox,0);
+
1880  }
+
1881  }
+
1882 
+
1883  // combine sums from different MPI ranks
+
1884  ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());
+
1885 
+
1886  // divide by the total number of cells we are averaging over
+
1887  for (int k = 0; k < size_z; ++k) {
+
1888  h_havg[k] /= area_z;
+
1889  }
+
1890 }
@@ -10232,106 +10237,106 @@

-
1740 {
-
1741  int lev = 0;
-
1742 
-
1743  // First, average down all levels (if doing two-way coupling)
-
1744  if (solverChoice.coupling_type == CouplingType::TwoWay) {
-
1745  AverageDown();
-
1746  }
-
1747 
-
1748  MultiFab mf(grids[lev], dmap[lev], 5, 0);
+
1742 {
+
1743  int lev = 0;
+
1744 
+
1745  // First, average down all levels (if doing two-way coupling)
+
1746  if (solverChoice.coupling_type == CouplingType::TwoWay) {
+
1747  AverageDown();
+
1748  }
1749 
-
1750  int zdir = 2;
-
1751  auto domain = geom[0].Domain();
-
1752 
-
1753  bool use_moisture = (solverChoice.moisture_type != MoistureType::None);
-
1754  bool is_anelastic = (solverChoice.anelastic[lev] == 1);
-
1755 
-
1756  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
-
1757  const Box& bx = mfi.validbox();
-
1758  auto fab_arr = mf.array(mfi);
-
1759  auto const hse_arr = base_state[lev].const_array(mfi);
-
1760  auto const cons_arr = vars_new[lev][Vars::cons].const_array(mfi);
-
1761  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
1762  Real dens = cons_arr(i, j, k, Rho_comp);
-
1763  fab_arr(i, j, k, 0) = dens;
-
1764  fab_arr(i, j, k, 1) = cons_arr(i, j, k, RhoTheta_comp) / dens;
-
1765  if (!use_moisture) {
-
1766  if (is_anelastic) {
-
1767  fab_arr(i,j,k,2) = hse_arr(i,j,k,BaseState::p0_comp);
-
1768  } else {
-
1769  fab_arr(i,j,k,2) = getPgivenRTh(cons_arr(i,j,k,RhoTheta_comp));
-
1770  }
-
1771  }
-
1772  });
-
1773  }
-
1774 
-
1775  if (use_moisture)
-
1776  {
-
1777  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
-
1778  const Box& bx = mfi.validbox();
-
1779  auto fab_arr = mf.array(mfi);
-
1780  auto const hse_arr = base_state[lev].const_array(mfi);
-
1781  auto const cons_arr = vars_new[lev][Vars::cons].const_array(mfi);
-
1782  int ncomp = vars_new[lev][Vars::cons].nComp();
-
1783 
-
1784  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
1785  Real dens = cons_arr(i, j, k, Rho_comp);
-
1786  if (is_anelastic) {
-
1787  fab_arr(i,j,k,2) = hse_arr(i,j,k,BaseState::p0_comp);
-
1788  } else {
-
1789  Real qv = cons_arr(i, j, k, RhoQ1_comp) / dens;
-
1790  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, RhoTheta_comp), qv);
-
1791  }
-
1792  fab_arr(i, j, k, 3) = (ncomp > RhoQ1_comp ? cons_arr(i, j, k, RhoQ1_comp) / dens : 0.0);
-
1793  fab_arr(i, j, k, 4) = (ncomp > RhoQ2_comp ? cons_arr(i, j, k, RhoQ2_comp) / dens : 0.0);
-
1794  });
-
1795  }
-
1796 
-
1797  Gpu::HostVector<Real> h_avg_qv = sumToLine(mf,3,1,domain,zdir);
-
1798  Gpu::HostVector<Real> h_avg_qc = sumToLine(mf,4,1,domain,zdir);
-
1799  }
-
1800 
-
1801  // Sum in the horizontal plane
-
1802  Gpu::HostVector<Real> h_avg_density = sumToLine(mf,0,1,domain,zdir);
-
1803  Gpu::HostVector<Real> h_avg_temperature = sumToLine(mf,1,1,domain,zdir);
-
1804  Gpu::HostVector<Real> h_avg_pressure = sumToLine(mf,2,1,domain,zdir);
-
1805 
-
1806  // Divide by the total number of cells we are averaging over
-
1807  int size_z = domain.length(zdir);
-
1808  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
-
1809  int klen = static_cast<int>(h_avg_density.size());
-
1810 
-
1811  for (int k = 0; k < klen; ++k) {
-
1812  h_havg_density[k] /= area_z;
-
1813  h_havg_temperature[k] /= area_z;
-
1814  h_havg_pressure[k] /= area_z;
-
1815  if (solverChoice.moisture_type != MoistureType::None)
-
1816  {
-
1817  h_havg_qc[k] /= area_z;
-
1818  h_havg_qv[k] /= area_z;
-
1819  }
-
1820  } // k
-
1821 
-
1822  // resize device vectors
-
1823  d_havg_density.resize(size_z, 0.0_rt);
-
1824  d_havg_temperature.resize(size_z, 0.0_rt);
-
1825  d_havg_pressure.resize(size_z, 0.0_rt);
-
1826 
-
1827  // copy host vectors to device vectors
-
1828  Gpu::copy(Gpu::hostToDevice, h_havg_density.begin(), h_havg_density.end(), d_havg_density.begin());
-
1829  Gpu::copy(Gpu::hostToDevice, h_havg_temperature.begin(), h_havg_temperature.end(), d_havg_temperature.begin());
-
1830  Gpu::copy(Gpu::hostToDevice, h_havg_pressure.begin(), h_havg_pressure.end(), d_havg_pressure.begin());
-
1831 
-
1832  if (solverChoice.moisture_type != MoistureType::None)
-
1833  {
-
1834  d_havg_qv.resize(size_z, 0.0_rt);
-
1835  d_havg_qc.resize(size_z, 0.0_rt);
-
1836  Gpu::copy(Gpu::hostToDevice, h_havg_qv.begin(), h_havg_qv.end(), d_havg_qv.begin());
-
1837  Gpu::copy(Gpu::hostToDevice, h_havg_qc.begin(), h_havg_qc.end(), d_havg_qc.begin());
-
1838  }
-
1839 }
+
1750  MultiFab mf(grids[lev], dmap[lev], 5, 0);
+
1751 
+
1752  int zdir = 2;
+
1753  auto domain = geom[0].Domain();
+
1754 
+
1755  bool use_moisture = (solverChoice.moisture_type != MoistureType::None);
+
1756  bool is_anelastic = (solverChoice.anelastic[lev] == 1);
+
1757 
+
1758  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
+
1759  const Box& bx = mfi.validbox();
+
1760  auto fab_arr = mf.array(mfi);
+
1761  auto const hse_arr = base_state[lev].const_array(mfi);
+
1762  auto const cons_arr = vars_new[lev][Vars::cons].const_array(mfi);
+
1763  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
1764  Real dens = cons_arr(i, j, k, Rho_comp);
+
1765  fab_arr(i, j, k, 0) = dens;
+
1766  fab_arr(i, j, k, 1) = cons_arr(i, j, k, RhoTheta_comp) / dens;
+
1767  if (!use_moisture) {
+
1768  if (is_anelastic) {
+
1769  fab_arr(i,j,k,2) = hse_arr(i,j,k,BaseState::p0_comp);
+
1770  } else {
+
1771  fab_arr(i,j,k,2) = getPgivenRTh(cons_arr(i,j,k,RhoTheta_comp));
+
1772  }
+
1773  }
+
1774  });
+
1775  }
+
1776 
+
1777  if (use_moisture)
+
1778  {
+
1779  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
+
1780  const Box& bx = mfi.validbox();
+
1781  auto fab_arr = mf.array(mfi);
+
1782  auto const hse_arr = base_state[lev].const_array(mfi);
+
1783  auto const cons_arr = vars_new[lev][Vars::cons].const_array(mfi);
+
1784  int ncomp = vars_new[lev][Vars::cons].nComp();
+
1785 
+
1786  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
1787  Real dens = cons_arr(i, j, k, Rho_comp);
+
1788  if (is_anelastic) {
+
1789  fab_arr(i,j,k,2) = hse_arr(i,j,k,BaseState::p0_comp);
+
1790  } else {
+
1791  Real qv = cons_arr(i, j, k, RhoQ1_comp) / dens;
+
1792  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, RhoTheta_comp), qv);
+
1793  }
+
1794  fab_arr(i, j, k, 3) = (ncomp > RhoQ1_comp ? cons_arr(i, j, k, RhoQ1_comp) / dens : 0.0);
+
1795  fab_arr(i, j, k, 4) = (ncomp > RhoQ2_comp ? cons_arr(i, j, k, RhoQ2_comp) / dens : 0.0);
+
1796  });
+
1797  }
+
1798 
+
1799  Gpu::HostVector<Real> h_avg_qv = sumToLine(mf,3,1,domain,zdir);
+
1800  Gpu::HostVector<Real> h_avg_qc = sumToLine(mf,4,1,domain,zdir);
+
1801  }
+
1802 
+
1803  // Sum in the horizontal plane
+
1804  Gpu::HostVector<Real> h_avg_density = sumToLine(mf,0,1,domain,zdir);
+
1805  Gpu::HostVector<Real> h_avg_temperature = sumToLine(mf,1,1,domain,zdir);
+
1806  Gpu::HostVector<Real> h_avg_pressure = sumToLine(mf,2,1,domain,zdir);
+
1807 
+
1808  // Divide by the total number of cells we are averaging over
+
1809  int size_z = domain.length(zdir);
+
1810  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
+
1811  int klen = static_cast<int>(h_avg_density.size());
+
1812 
+
1813  for (int k = 0; k < klen; ++k) {
+
1814  h_havg_density[k] /= area_z;
+
1815  h_havg_temperature[k] /= area_z;
+
1816  h_havg_pressure[k] /= area_z;
+
1817  if (solverChoice.moisture_type != MoistureType::None)
+
1818  {
+
1819  h_havg_qc[k] /= area_z;
+
1820  h_havg_qv[k] /= area_z;
+
1821  }
+
1822  } // k
+
1823 
+
1824  // resize device vectors
+
1825  d_havg_density.resize(size_z, 0.0_rt);
+
1826  d_havg_temperature.resize(size_z, 0.0_rt);
+
1827  d_havg_pressure.resize(size_z, 0.0_rt);
+
1828 
+
1829  // copy host vectors to device vectors
+
1830  Gpu::copy(Gpu::hostToDevice, h_havg_density.begin(), h_havg_density.end(), d_havg_density.begin());
+
1831  Gpu::copy(Gpu::hostToDevice, h_havg_temperature.begin(), h_havg_temperature.end(), d_havg_temperature.begin());
+
1832  Gpu::copy(Gpu::hostToDevice, h_havg_pressure.begin(), h_havg_pressure.end(), d_havg_pressure.begin());
+
1833 
+
1834  if (solverChoice.moisture_type != MoistureType::None)
+
1835  {
+
1836  d_havg_qv.resize(size_z, 0.0_rt);
+
1837  d_havg_qc.resize(size_z, 0.0_rt);
+
1838  Gpu::copy(Gpu::hostToDevice, h_havg_qv.begin(), h_havg_qv.end(), d_havg_qv.begin());
+
1839  Gpu::copy(Gpu::hostToDevice, h_havg_qc.begin(), h_havg_qc.end(), d_havg_qc.begin());
+
1840  }
+
1841 }
ERF::d_havg_temperature
amrex::Gpu::DeviceVector< amrex::Real > d_havg_temperature
Definition: ERF.H:1132
ERF::d_havg_qv
amrex::Gpu::DeviceVector< amrex::Real > d_havg_qv
Definition: ERF.H:1134
ERF::h_havg_pressure
amrex::Vector< amrex::Real > h_havg_pressure
Definition: ERF.H:1127
@@ -10510,8 +10515,8 @@

ERF::update_terrain_arrays
void update_terrain_arrays(int lev)
Definition: ERF_MakeNewArrays.cpp:518

ERF::init_zphys
void init_zphys(int lev, amrex::Real time)
Definition: ERF_MakeNewArrays.cpp:453
ERF::init_stuff
void init_stuff(int lev, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm, amrex::Vector< amrex::MultiFab > &lev_new, amrex::Vector< amrex::MultiFab > &lev_old, amrex::MultiFab &tmp_base_state, std::unique_ptr< amrex::MultiFab > &tmp_zphys_nd)
Definition: ERF_MakeNewArrays.cpp:23
-
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1917
-
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:655
+
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1919
+
SolverChoice::do_forest
bool do_forest
Definition: ERF_DataStruct.H:661
@@ -10717,7 +10722,7 @@

179 }
ERFPostProcessBaseGrids
BoxArray ERFPostProcessBaseGrids(const Box &domain, bool decompose_in_z)
Definition: ERF_ChopGrids.cpp:6
ERF::init_immersed_body
void init_immersed_body(int lev, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm)
Definition: ERF_MakeNewLevel.cpp:496
-
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:1281
+
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:1283
LandSurface::Get_Data_Size
int Get_Data_Size()
Definition: ERF_LandSurface.H:78
LandSurface::Get_Flux_Ptr
amrex::MultiFab * Get_Flux_Ptr(const int &lev, const int &varIdx)
Definition: ERF_LandSurface.H:72
LandSurface::Init
void Init(const int &lev, const amrex::MultiFab &cons_in, const amrex::Geometry &geom, const amrex::Real &dt_advance)
Definition: ERF_LandSurface.H:42
@@ -10949,67 +10954,67 @@

-
1674 {
-
1675  AMREX_ALWAYS_ASSERT(cfl > 0. || fixed_dt[0] > 0.);
-
1676 
-
1677  // We don't allow use_real_bcs to be true if init_type is not either InitType::Real or InitType::Metgrid
-
1678  AMREX_ALWAYS_ASSERT(!use_real_bcs || ((init_type == InitType::Real) || (init_type == InitType::Metgrid)) );
-
1679 
-
1680  AMREX_ALWAYS_ASSERT(real_width >= 0);
-
1681  AMREX_ALWAYS_ASSERT(real_set_width >= 0);
-
1682  AMREX_ALWAYS_ASSERT(real_width >= real_set_width);
-
1683 
-
1684  if (cf_width < 0 || cf_set_width < 0 || cf_width < cf_set_width) {
-
1685  Abort("You must set cf_width >= cf_set_width >= 0");
-
1686  }
-
1687  if (max_level > 0 && cf_set_width > 0) {
-
1688  for (int lev = 1; lev <= max_level; lev++) {
-
1689  if (cf_set_width%ref_ratio[lev-1][0] != 0 ||
-
1690  cf_set_width%ref_ratio[lev-1][1] != 0 ||
-
1691  cf_set_width%ref_ratio[lev-1][2] != 0 ) {
-
1692  Abort("You must set cf_width to be a multiple of ref_ratio");
-
1693  }
-
1694  }
-
1695  }
-
1696 
-
1697  // If fixed_mri_dt_ratio is set, it must be even
-
1698  if (fixed_mri_dt_ratio > 0 && (fixed_mri_dt_ratio%2 != 0) )
-
1699  {
-
1700  Abort("If you specify fixed_mri_dt_ratio, it must be even");
-
1701  }
-
1702 
-
1703  for (int lev = 0; lev <= max_level; lev++)
-
1704  {
-
1705  // We ignore fixed_fast_dt if not substepping
-
1706  if (solverChoice.substepping_type[lev] == SubsteppingType::None) {
-
1707  fixed_fast_dt[lev] = -1.0;
-
1708  }
-
1709 
-
1710  // If both fixed_dt and fast_dt are specified, their ratio must be an even integer
-
1711  if (fixed_dt[lev] > 0. && fixed_fast_dt[lev] > 0. && fixed_mri_dt_ratio <= 0)
-
1712  {
-
1713  Real eps = 1.e-12;
-
1714  int ratio = static_cast<int>( ( (1.0+eps) * fixed_dt[lev] ) / fixed_fast_dt[lev] );
-
1715  if (fixed_dt[lev] / fixed_fast_dt[lev] != ratio)
-
1716  {
-
1717  Abort("Ratio of fixed_dt to fixed_fast_dt must be an even integer");
-
1718  }
-
1719  }
-
1720 
-
1721  // If all three are specified, they must be consistent
-
1722  if (fixed_dt[lev] > 0. && fixed_fast_dt[lev] > 0. && fixed_mri_dt_ratio > 0)
-
1723  {
-
1724  if (fixed_dt[lev] / fixed_fast_dt[lev] != fixed_mri_dt_ratio)
-
1725  {
-
1726  Abort("Dt is over-specfied");
-
1727  }
-
1728  }
-
1729  } // lev
-
1730 
-
1731  if (solverChoice.coupling_type == CouplingType::TwoWay && cf_width > 0) {
-
1732  Abort("For two-way coupling you must set cf_width = 0");
-
1733  }
-
1734 }
+
1676 {
+
1677  AMREX_ALWAYS_ASSERT(cfl > 0. || fixed_dt[0] > 0.);
+
1678 
+
1679  // We don't allow use_real_bcs to be true if init_type is not either InitType::Real or InitType::Metgrid
+
1680  AMREX_ALWAYS_ASSERT(!use_real_bcs || ((init_type == InitType::Real) || (init_type == InitType::Metgrid)) );
+
1681 
+
1682  AMREX_ALWAYS_ASSERT(real_width >= 0);
+
1683  AMREX_ALWAYS_ASSERT(real_set_width >= 0);
+
1684  AMREX_ALWAYS_ASSERT(real_width >= real_set_width);
+
1685 
+
1686  if (cf_width < 0 || cf_set_width < 0 || cf_width < cf_set_width) {
+
1687  Abort("You must set cf_width >= cf_set_width >= 0");
+
1688  }
+
1689  if (max_level > 0 && cf_set_width > 0) {
+
1690  for (int lev = 1; lev <= max_level; lev++) {
+
1691  if (cf_set_width%ref_ratio[lev-1][0] != 0 ||
+
1692  cf_set_width%ref_ratio[lev-1][1] != 0 ||
+
1693  cf_set_width%ref_ratio[lev-1][2] != 0 ) {
+
1694  Abort("You must set cf_width to be a multiple of ref_ratio");
+
1695  }
+
1696  }
+
1697  }
+
1698 
+
1699  // If fixed_mri_dt_ratio is set, it must be even
+
1700  if (fixed_mri_dt_ratio > 0 && (fixed_mri_dt_ratio%2 != 0) )
+
1701  {
+
1702  Abort("If you specify fixed_mri_dt_ratio, it must be even");
+
1703  }
+
1704 
+
1705  for (int lev = 0; lev <= max_level; lev++)
+
1706  {
+
1707  // We ignore fixed_fast_dt if not substepping
+
1708  if (solverChoice.substepping_type[lev] == SubsteppingType::None) {
+
1709  fixed_fast_dt[lev] = -1.0;
+
1710  }
+
1711 
+
1712  // If both fixed_dt and fast_dt are specified, their ratio must be an even integer
+
1713  if (fixed_dt[lev] > 0. && fixed_fast_dt[lev] > 0. && fixed_mri_dt_ratio <= 0)
+
1714  {
+
1715  Real eps = 1.e-12;
+
1716  int ratio = static_cast<int>( ( (1.0+eps) * fixed_dt[lev] ) / fixed_fast_dt[lev] );
+
1717  if (fixed_dt[lev] / fixed_fast_dt[lev] != ratio)
+
1718  {
+
1719  Abort("Ratio of fixed_dt to fixed_fast_dt must be an even integer");
+
1720  }
+
1721  }
+
1722 
+
1723  // If all three are specified, they must be consistent
+
1724  if (fixed_dt[lev] > 0. && fixed_fast_dt[lev] > 0. && fixed_mri_dt_ratio > 0)
+
1725  {
+
1726  if (fixed_dt[lev] / fixed_fast_dt[lev] != fixed_mri_dt_ratio)
+
1727  {
+
1728  Abort("Dt is over-specfied");
+
1729  }
+
1730  }
+
1731  } // lev
+
1732 
+
1733  if (solverChoice.coupling_type == CouplingType::TwoWay && cf_width > 0) {
+
1734  Abort("For two-way coupling you must set cf_width = 0");
+
1735  }
+
1736 }
ERF::real_width
int real_width
Definition: ERF.H:1046
ERF::real_set_width
int real_set_width
Definition: ERF.H:1047
@@ -11935,7 +11940,7 @@

ERF::solve_with_mlmg
void solve_with_mlmg(int lev, amrex::Vector< amrex::MultiFab > &rhs, amrex::Vector< amrex::MultiFab > &p, amrex::Vector< amrex::Array< amrex::MultiFab, AMREX_SPACEDIM >> &fluxes)
Definition: ERF_SolveWithMLMG.cpp:40

ERF::solve_with_gmres
void solve_with_gmres(int lev, amrex::Vector< amrex::MultiFab > &rhs, amrex::Vector< amrex::MultiFab > &p, amrex::Vector< amrex::Array< amrex::MultiFab, AMREX_SPACEDIM >> &fluxes)
Definition: ERF_SolveWithGMRES.cpp:12
MicVar::omega
@ omega
Definition: ERF_SAM.H:49
-
SolverChoice::poisson_abstol
amrex::Real poisson_abstol
Definition: ERF_DataStruct.H:552
+
SolverChoice::poisson_abstol
amrex::Real poisson_abstol
Definition: ERF_DataStruct.H:557
Here is the call graph for this function:
@@ -12204,8 +12209,8 @@

ERF::get_projection_bc
amrex::Array< amrex::LinOpBCType, AMREX_SPACEDIM > get_projection_bc(amrex::Orientation::Side side) const noexcept
Definition: ERF_SolveWithMLMG.cpp:17

ERF::projection_has_dirichlet
bool projection_has_dirichlet(amrex::Array< amrex::LinOpBCType, AMREX_SPACEDIM > bcs) const
Definition: ERF_PoissonSolve_tb.cpp:8
ERF::volWgtSumMF
amrex::Real volWgtSumMF(int lev, const amrex::MultiFab &mf, int comp, const amrex::MultiFab &mapfac, bool local, bool finemask)
Definition: ERF_WriteScalarProfiles.cpp:378
-
SolverChoice::poisson_reltol
amrex::Real poisson_reltol
Definition: ERF_DataStruct.H:553
-
SolverChoice::ncorr
int ncorr
Definition: ERF_DataStruct.H:551
+
SolverChoice::poisson_reltol
amrex::Real poisson_reltol
Definition: ERF_DataStruct.H:558
+
SolverChoice::ncorr
int ncorr
Definition: ERF_DataStruct.H:556
Here is the call graph for this function:
@@ -12684,282 +12689,282 @@

-
1394 {
-
1395  {
-
1396  ParmParse pp; // Traditionally, max_step and stop_time do not have prefix.
-
1397  pp.query("max_step", max_step);
-
1398  pp.query("stop_time", stop_time);
-
1399 
-
1400  pp.query("start_time", start_time); // This is optional, it defaults to 0
-
1401  }
-
1402 
-
1403  ParmParse pp(pp_prefix);
-
1404  ParmParse pp_amr("amr");
-
1405  {
-
1406  // The type of the file we restart from
-
1407  pp.query("restart_type", restart_type);
-
1408 
-
1409  pp.query("regrid_int", regrid_int);
-
1410  pp.query("check_file", check_file);
-
1411  pp.query("check_type", check_type);
-
1412 
-
1413  // The regression tests use "amr.restart" and "amr.m_check_int" so we allow
-
1414  // for those or "erf.restart" / "erf.m_check_int" with the former taking
-
1415  // precedence if both are specified
-
1416  pp.query("check_int", m_check_int);
-
1417  pp.query("check_per", m_check_per);
-
1418  pp_amr.query("check_int", m_check_int);
-
1419  pp_amr.query("check_per", m_check_per);
-
1420 
-
1421  pp.query("restart", restart_chkfile);
-
1422  pp_amr.query("restart", restart_chkfile);
-
1423 
-
1424  // Verbosity
-
1425  pp.query("v", verbose);
-
1426  pp.query("mg_v", mg_verbose);
-
1427  pp.query("use_fft", use_fft);
-
1428 #ifndef ERF_USE_FFT
-
1429  if (use_fft) {
-
1430  amrex::Abort("You must build with USE_FFT in order to set use_fft = true in your inputs file");
-
1431  }
-
1432 #endif
-
1433 
-
1434  // Frequency of diagnostic output
-
1435  pp.query("sum_interval", sum_interval);
-
1436  pp.query("sum_period" , sum_per);
-
1437 
-
1438  pp.query("pert_interval", pert_interval);
+
1396 {
+
1397  {
+
1398  ParmParse pp; // Traditionally, max_step and stop_time do not have prefix.
+
1399  pp.query("max_step", max_step);
+
1400  pp.query("stop_time", stop_time);
+
1401 
+
1402  pp.query("start_time", start_time); // This is optional, it defaults to 0
+
1403  }
+
1404 
+
1405  ParmParse pp(pp_prefix);
+
1406  ParmParse pp_amr("amr");
+
1407  {
+
1408  // The type of the file we restart from
+
1409  pp.query("restart_type", restart_type);
+
1410 
+
1411  pp.query("regrid_int", regrid_int);
+
1412  pp.query("check_file", check_file);
+
1413  pp.query("check_type", check_type);
+
1414 
+
1415  // The regression tests use "amr.restart" and "amr.m_check_int" so we allow
+
1416  // for those or "erf.restart" / "erf.m_check_int" with the former taking
+
1417  // precedence if both are specified
+
1418  pp.query("check_int", m_check_int);
+
1419  pp.query("check_per", m_check_per);
+
1420  pp_amr.query("check_int", m_check_int);
+
1421  pp_amr.query("check_per", m_check_per);
+
1422 
+
1423  pp.query("restart", restart_chkfile);
+
1424  pp_amr.query("restart", restart_chkfile);
+
1425 
+
1426  // Verbosity
+
1427  pp.query("v", verbose);
+
1428  pp.query("mg_v", mg_verbose);
+
1429  pp.query("use_fft", use_fft);
+
1430 #ifndef ERF_USE_FFT
+
1431  if (use_fft) {
+
1432  amrex::Abort("You must build with USE_FFT in order to set use_fft = true in your inputs file");
+
1433  }
+
1434 #endif
+
1435 
+
1436  // Frequency of diagnostic output
+
1437  pp.query("sum_interval", sum_interval);
+
1438  pp.query("sum_period" , sum_per);
1439 
-
1440  // Time step controls
-
1441  pp.query("cfl", cfl);
-
1442  pp.query("init_shrink", init_shrink);
-
1443  pp.query("change_max", change_max);
-
1444 
-
1445  fixed_dt.resize(max_level+1,-1.);
-
1446  fixed_fast_dt.resize(max_level+1,-1.);
-
1447 
-
1448  pp.query("fixed_dt", fixed_dt[0]);
-
1449  pp.query("fixed_fast_dt", fixed_fast_dt[0]);
-
1450 
-
1451  for (int lev = 1; lev <= max_level; lev++)
-
1452  {
-
1453  fixed_dt[lev] = fixed_dt[lev-1] / static_cast<Real>(MaxRefRatio(lev-1));
-
1454  fixed_fast_dt[lev] = fixed_fast_dt[lev-1] / static_cast<Real>(MaxRefRatio(lev-1));
-
1455  }
-
1456 
-
1457  pp.query("fixed_mri_dt_ratio", fixed_mri_dt_ratio);
+
1440  pp.query("pert_interval", pert_interval);
+
1441 
+
1442  // Time step controls
+
1443  pp.query("cfl", cfl);
+
1444  pp.query("init_shrink", init_shrink);
+
1445  pp.query("change_max", change_max);
+
1446 
+
1447  fixed_dt.resize(max_level+1,-1.);
+
1448  fixed_fast_dt.resize(max_level+1,-1.);
+
1449 
+
1450  pp.query("fixed_dt", fixed_dt[0]);
+
1451  pp.query("fixed_fast_dt", fixed_fast_dt[0]);
+
1452 
+
1453  for (int lev = 1; lev <= max_level; lev++)
+
1454  {
+
1455  fixed_dt[lev] = fixed_dt[lev-1] / static_cast<Real>(MaxRefRatio(lev-1));
+
1456  fixed_fast_dt[lev] = fixed_fast_dt[lev-1] / static_cast<Real>(MaxRefRatio(lev-1));
+
1457  }
1458 
-
1459  // How to initialize
-
1460  init_type = InitType::None;
-
1461  pp.query_enum_case_insensitive("init_type",init_type);
-
1462 
-
1463  // Should we use the bcs we've read in from wrfbdy or metgrid files?
-
1464  // We default to yes if we have them, but the user can override that option
-
1465  use_real_bcs = ( (init_type == InitType::Real) || (init_type == InitType::Metgrid) );
-
1466  pp.query("use_real_bcs",use_real_bcs);
-
1467 
-
1468  // We use this to keep track of how many boxes we read in from WRF initialization
-
1469  num_files_at_level.resize(max_level+1,0);
-
1470 
-
1471  // We use this to keep track of how many boxes are specified thru the refinement indicators
-
1472  num_boxes_at_level.resize(max_level+1,0);
-
1473  boxes_at_level.resize(max_level+1);
-
1474 
-
1475  // We always have exactly one file at level 0
-
1476  num_boxes_at_level[0] = 1;
-
1477  boxes_at_level[0].resize(1);
-
1478  boxes_at_level[0][0] = geom[0].Domain();
-
1479 
-
1480 #ifdef ERF_USE_NETCDF
-
1481  nc_init_file.resize(max_level+1);
-
1482 
-
1483  // NetCDF wrfinput initialization files -- possibly multiple files at each of multiple levels
-
1484  // but we always have exactly one file at level 0
-
1485  for (int lev = 0; lev <= max_level; lev++)
-
1486  {
-
1487  const std::string nc_file_names = Concatenate("nc_init_file_",lev,1);
-
1488  if (pp.contains(nc_file_names.c_str()))
-
1489  {
-
1490  int num_files = pp.countval(nc_file_names.c_str());
-
1491  num_files_at_level[lev] = num_files;
-
1492  nc_init_file[lev].resize(num_files);
-
1493  pp.queryarr(nc_file_names.c_str(), nc_init_file[lev],0,num_files);
-
1494  for (int j = 0; j < num_files; j++)
-
1495  Print() << "Reading NC init file names at level " << lev << " and index " << j << " : " << nc_init_file[lev][j] << std::endl;
-
1496  }
-
1497  }
-
1498 
-
1499  // NetCDF wrfbdy lateral boundary file
-
1500  pp.query("nc_bdy_file", nc_bdy_file);
-
1501 #endif
-
1502 
-
1503  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
-
1504  pp.query("init_sounding_ideal", init_sounding_ideal);
-
1505 
-
1506  // Options for vertical interpolation of met_em*.nc data.
-
1507  pp.query("metgrid_debug_quiescent", metgrid_debug_quiescent);
-
1508  pp.query("metgrid_debug_isothermal", metgrid_debug_isothermal);
-
1509  pp.query("metgrid_debug_dry", metgrid_debug_dry);
-
1510  pp.query("metgrid_debug_psfc", metgrid_debug_psfc);
-
1511  pp.query("metgrid_debug_msf", metgrid_debug_msf);
-
1512  pp.query("metgrid_interp_theta", metgrid_interp_theta);
-
1513  pp.query("metgrid_basic_linear", metgrid_basic_linear);
-
1514  pp.query("metgrid_use_below_sfc", metgrid_use_below_sfc);
-
1515  pp.query("metgrid_use_sfc", metgrid_use_sfc);
-
1516  pp.query("metgrid_retain_sfc", metgrid_retain_sfc);
-
1517  pp.query("metgrid_proximity", metgrid_proximity);
-
1518  pp.query("metgrid_order", metgrid_order);
-
1519  pp.query("metgrid_force_sfc_k", metgrid_force_sfc_k);
-
1520 
-
1521  // Set default to FullState for now ... later we will try Perturbation
-
1522  interpolation_type = StateInterpType::FullState;
-
1523  pp.query_enum_case_insensitive("interpolation_type" ,interpolation_type);
-
1524 
-
1525  PlotFileType plotfile_type_temp = PlotFileType::None;
-
1526  pp.query_enum_case_insensitive("plotfile_type" ,plotfile_type_temp);
-
1527  pp.query_enum_case_insensitive("plotfile_type_1",plotfile_type_1);
-
1528  pp.query_enum_case_insensitive("plotfile_type_2",plotfile_type_2);
-
1529  //
-
1530  // This option is for backward consistency -- if only plotfile_type is set,
-
1531  // then it will be used for both 1 and 2 if and only if they are not set
-
1532  //
-
1533  // Default is native amrex if no type is specified
+
1459  pp.query("fixed_mri_dt_ratio", fixed_mri_dt_ratio);
+
1460 
+
1461  // How to initialize
+
1462  init_type = InitType::None;
+
1463  pp.query_enum_case_insensitive("init_type",init_type);
+
1464 
+
1465  // Should we use the bcs we've read in from wrfbdy or metgrid files?
+
1466  // We default to yes if we have them, but the user can override that option
+
1467  use_real_bcs = ( (init_type == InitType::Real) || (init_type == InitType::Metgrid) );
+
1468  pp.query("use_real_bcs",use_real_bcs);
+
1469 
+
1470  // We use this to keep track of how many boxes we read in from WRF initialization
+
1471  num_files_at_level.resize(max_level+1,0);
+
1472 
+
1473  // We use this to keep track of how many boxes are specified thru the refinement indicators
+
1474  num_boxes_at_level.resize(max_level+1,0);
+
1475  boxes_at_level.resize(max_level+1);
+
1476 
+
1477  // We always have exactly one file at level 0
+
1478  num_boxes_at_level[0] = 1;
+
1479  boxes_at_level[0].resize(1);
+
1480  boxes_at_level[0][0] = geom[0].Domain();
+
1481 
+
1482 #ifdef ERF_USE_NETCDF
+
1483  nc_init_file.resize(max_level+1);
+
1484 
+
1485  // NetCDF wrfinput initialization files -- possibly multiple files at each of multiple levels
+
1486  // but we always have exactly one file at level 0
+
1487  for (int lev = 0; lev <= max_level; lev++)
+
1488  {
+
1489  const std::string nc_file_names = Concatenate("nc_init_file_",lev,1);
+
1490  if (pp.contains(nc_file_names.c_str()))
+
1491  {
+
1492  int num_files = pp.countval(nc_file_names.c_str());
+
1493  num_files_at_level[lev] = num_files;
+
1494  nc_init_file[lev].resize(num_files);
+
1495  pp.queryarr(nc_file_names.c_str(), nc_init_file[lev],0,num_files);
+
1496  for (int j = 0; j < num_files; j++)
+
1497  Print() << "Reading NC init file names at level " << lev << " and index " << j << " : " << nc_init_file[lev][j] << std::endl;
+
1498  }
+
1499  }
+
1500 
+
1501  // NetCDF wrfbdy lateral boundary file
+
1502  pp.query("nc_bdy_file", nc_bdy_file);
+
1503 #endif
+
1504 
+
1505  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
+
1506  pp.query("init_sounding_ideal", init_sounding_ideal);
+
1507 
+
1508  // Options for vertical interpolation of met_em*.nc data.
+
1509  pp.query("metgrid_debug_quiescent", metgrid_debug_quiescent);
+
1510  pp.query("metgrid_debug_isothermal", metgrid_debug_isothermal);
+
1511  pp.query("metgrid_debug_dry", metgrid_debug_dry);
+
1512  pp.query("metgrid_debug_psfc", metgrid_debug_psfc);
+
1513  pp.query("metgrid_debug_msf", metgrid_debug_msf);
+
1514  pp.query("metgrid_interp_theta", metgrid_interp_theta);
+
1515  pp.query("metgrid_basic_linear", metgrid_basic_linear);
+
1516  pp.query("metgrid_use_below_sfc", metgrid_use_below_sfc);
+
1517  pp.query("metgrid_use_sfc", metgrid_use_sfc);
+
1518  pp.query("metgrid_retain_sfc", metgrid_retain_sfc);
+
1519  pp.query("metgrid_proximity", metgrid_proximity);
+
1520  pp.query("metgrid_order", metgrid_order);
+
1521  pp.query("metgrid_force_sfc_k", metgrid_force_sfc_k);
+
1522 
+
1523  // Set default to FullState for now ... later we will try Perturbation
+
1524  interpolation_type = StateInterpType::FullState;
+
1525  pp.query_enum_case_insensitive("interpolation_type" ,interpolation_type);
+
1526 
+
1527  PlotFileType plotfile_type_temp = PlotFileType::None;
+
1528  pp.query_enum_case_insensitive("plotfile_type" ,plotfile_type_temp);
+
1529  pp.query_enum_case_insensitive("plotfile_type_1",plotfile_type_1);
+
1530  pp.query_enum_case_insensitive("plotfile_type_2",plotfile_type_2);
+
1531  //
+
1532  // This option is for backward consistency -- if only plotfile_type is set,
+
1533  // then it will be used for both 1 and 2 if and only if they are not set
1534  //
-
1535  if (plotfile_type_temp == PlotFileType::None) {
-
1536  if (plotfile_type_1 == PlotFileType::None) {
-
1537  plotfile_type_1 = PlotFileType::Amrex;
-
1538  }
-
1539  if (plotfile_type_2 == PlotFileType::None) {
-
1540  plotfile_type_2 = PlotFileType::Amrex;
-
1541  }
-
1542  } else {
-
1543  if (plotfile_type_1 == PlotFileType::None) {
-
1544  plotfile_type_1 = plotfile_type_temp;
-
1545  } else {
-
1546  amrex::Abort("You must set either plotfile_type or plotfile_type_1, not both");
-
1547  }
-
1548  if (plotfile_type_2 == PlotFileType::None) {
-
1549  plotfile_type_2 = plotfile_type_temp;
-
1550  } else {
-
1551  amrex::Abort("You must set either plotfile_type or plotfile_type_2, not both");
-
1552  }
-
1553  }
-
1554 #ifndef ERF_USE_NETCDF
-
1555  if (plotfile_type_1 == PlotFileType::Netcdf ||
-
1556  plotfile_type_2 == PlotFileType::Netcdf) {
-
1557  amrex::Abort("Plotfile type = Netcdf is not allowed without USE_NETCDF = TRUE");
-
1558  }
-
1559 #endif
-
1560 
-
1561  pp.query("plot_file_1", plot_file_1);
-
1562  pp.query("plot_file_2", plot_file_2);
-
1563  pp.query("plot_int_1" , m_plot_int_1);
-
1564  pp.query("plot_int_2" , m_plot_int_2);
-
1565  pp.query("plot_per_1", m_plot_per_1);
-
1566  pp.query("plot_per_2", m_plot_per_2);
-
1567 
-
1568  pp.query("expand_plotvars_to_unif_rr",m_expand_plotvars_to_unif_rr);
+
1535  // Default is native amrex if no type is specified
+
1536  //
+
1537  if (plotfile_type_temp == PlotFileType::None) {
+
1538  if (plotfile_type_1 == PlotFileType::None) {
+
1539  plotfile_type_1 = PlotFileType::Amrex;
+
1540  }
+
1541  if (plotfile_type_2 == PlotFileType::None) {
+
1542  plotfile_type_2 = PlotFileType::Amrex;
+
1543  }
+
1544  } else {
+
1545  if (plotfile_type_1 == PlotFileType::None) {
+
1546  plotfile_type_1 = plotfile_type_temp;
+
1547  } else {
+
1548  amrex::Abort("You must set either plotfile_type or plotfile_type_1, not both");
+
1549  }
+
1550  if (plotfile_type_2 == PlotFileType::None) {
+
1551  plotfile_type_2 = plotfile_type_temp;
+
1552  } else {
+
1553  amrex::Abort("You must set either plotfile_type or plotfile_type_2, not both");
+
1554  }
+
1555  }
+
1556 #ifndef ERF_USE_NETCDF
+
1557  if (plotfile_type_1 == PlotFileType::Netcdf ||
+
1558  plotfile_type_2 == PlotFileType::Netcdf) {
+
1559  amrex::Abort("Plotfile type = Netcdf is not allowed without USE_NETCDF = TRUE");
+
1560  }
+
1561 #endif
+
1562 
+
1563  pp.query("plot_file_1", plot_file_1);
+
1564  pp.query("plot_file_2", plot_file_2);
+
1565  pp.query("plot_int_1" , m_plot_int_1);
+
1566  pp.query("plot_int_2" , m_plot_int_2);
+
1567  pp.query("plot_per_1", m_plot_per_1);
+
1568  pp.query("plot_per_2", m_plot_per_2);
1569 
-
1570  pp.query("plot_face_vels",m_plot_face_vels);
+
1570  pp.query("expand_plotvars_to_unif_rr",m_expand_plotvars_to_unif_rr);
1571 
-
1572  if ( (m_plot_int_1 > 0 && m_plot_per_1 > 0) ||
-
1573  (m_plot_int_2 > 0 && m_plot_per_2 > 0.) ) {
-
1574  Abort("Must choose only one of plot_int or plot_per");
-
1575  }
-
1576 
-
1577  pp.query("profile_int", profile_int);
-
1578  pp.query("destag_profiles", destag_profiles);
-
1579 
-
1580  pp.query("plot_lsm", plot_lsm);
-
1581 #ifdef ERF_USE_RRTMGP
-
1582  pp.query("plot_rad", plot_rad);
-
1583 #endif
-
1584 
-
1585  pp.query("output_1d_column", output_1d_column);
-
1586  pp.query("column_per", column_per);
-
1587  pp.query("column_interval", column_interval);
-
1588  pp.query("column_loc_x", column_loc_x);
-
1589  pp.query("column_loc_y", column_loc_y);
-
1590  pp.query("column_file_name", column_file_name);
-
1591 
-
1592  // Sampler output frequency
-
1593  pp.query("sampler_per", sampler_per);
-
1594  pp.query("sampler_interval", sampler_interval);
-
1595 
-
1596  // Specify information about outputting planes of data
-
1597  pp.query("output_bndry_planes", output_bndry_planes);
-
1598  pp.query("bndry_output_planes_interval", bndry_output_planes_interval);
-
1599  pp.query("bndry_output_planes_per", bndry_output_planes_per);
-
1600  pp.query("bndry_output_start_time", bndry_output_planes_start_time);
-
1601 
-
1602  // Specify whether ingest boundary planes of data
-
1603  pp.query("input_bndry_planes", input_bndry_planes);
-
1604 
-
1605  // Query the set and total widths for wrfbdy interior ghost cells
-
1606  pp.query("real_width", real_width);
-
1607  pp.query("real_set_width", real_set_width);
-
1608 
-
1609  // Query the set and total widths for crse-fine interior ghost cells
-
1610  pp.query("cf_width", cf_width);
-
1611  pp.query("cf_set_width", cf_set_width);
-
1612 
-
1613  // Query the canopy model file name
-
1614  std::string forestfile;
-
1615  solverChoice.do_forest = pp.query("forest_file", forestfile);
-
1616  if (solverChoice.do_forest) {
-
1617  for (int lev = 0; lev <= max_level; ++lev) {
-
1618  m_forest[lev] = std::make_unique<ForestDrag>(forestfile);
-
1619  }
-
1620  }
-
1621 
-
1622  // AmrMesh iterate on grids?
-
1623  bool iterate(true);
-
1624  pp_amr.query("iterate_grids",iterate);
-
1625  if (!iterate) SetIterateToFalse();
-
1626  }
-
1627 
-
1628 #ifdef ERF_USE_PARTICLES
-
1629  readTracersParams();
-
1630 #endif
-
1631 
-
1632 #ifdef ERF_USE_MULTIBLOCK
-
1633  solverChoice.pp_prefix = pp_prefix;
-
1634 #endif
-
1635 
-
1636  solverChoice.init_params(max_level);
+
1572  pp.query("plot_face_vels",m_plot_face_vels);
+
1573 
+
1574  if ( (m_plot_int_1 > 0 && m_plot_per_1 > 0) ||
+
1575  (m_plot_int_2 > 0 && m_plot_per_2 > 0.) ) {
+
1576  Abort("Must choose only one of plot_int or plot_per");
+
1577  }
+
1578 
+
1579  pp.query("profile_int", profile_int);
+
1580  pp.query("destag_profiles", destag_profiles);
+
1581 
+
1582  pp.query("plot_lsm", plot_lsm);
+
1583 #ifdef ERF_USE_RRTMGP
+
1584  pp.query("plot_rad", plot_rad);
+
1585 #endif
+
1586 
+
1587  pp.query("output_1d_column", output_1d_column);
+
1588  pp.query("column_per", column_per);
+
1589  pp.query("column_interval", column_interval);
+
1590  pp.query("column_loc_x", column_loc_x);
+
1591  pp.query("column_loc_y", column_loc_y);
+
1592  pp.query("column_file_name", column_file_name);
+
1593 
+
1594  // Sampler output frequency
+
1595  pp.query("sampler_per", sampler_per);
+
1596  pp.query("sampler_interval", sampler_interval);
+
1597 
+
1598  // Specify information about outputting planes of data
+
1599  pp.query("output_bndry_planes", output_bndry_planes);
+
1600  pp.query("bndry_output_planes_interval", bndry_output_planes_interval);
+
1601  pp.query("bndry_output_planes_per", bndry_output_planes_per);
+
1602  pp.query("bndry_output_start_time", bndry_output_planes_start_time);
+
1603 
+
1604  // Specify whether ingest boundary planes of data
+
1605  pp.query("input_bndry_planes", input_bndry_planes);
+
1606 
+
1607  // Query the set and total widths for wrfbdy interior ghost cells
+
1608  pp.query("real_width", real_width);
+
1609  pp.query("real_set_width", real_set_width);
+
1610 
+
1611  // Query the set and total widths for crse-fine interior ghost cells
+
1612  pp.query("cf_width", cf_width);
+
1613  pp.query("cf_set_width", cf_set_width);
+
1614 
+
1615  // Query the canopy model file name
+
1616  std::string forestfile;
+
1617  solverChoice.do_forest = pp.query("forest_file", forestfile);
+
1618  if (solverChoice.do_forest) {
+
1619  for (int lev = 0; lev <= max_level; ++lev) {
+
1620  m_forest[lev] = std::make_unique<ForestDrag>(forestfile);
+
1621  }
+
1622  }
+
1623 
+
1624  // AmrMesh iterate on grids?
+
1625  bool iterate(true);
+
1626  pp_amr.query("iterate_grids",iterate);
+
1627  if (!iterate) SetIterateToFalse();
+
1628  }
+
1629 
+
1630 #ifdef ERF_USE_PARTICLES
+
1631  readTracersParams();
+
1632 #endif
+
1633 
+
1634 #ifdef ERF_USE_MULTIBLOCK
+
1635  solverChoice.pp_prefix = pp_prefix;
+
1636 #endif
1637 
-
1638  // No moving terrain with init real (we must do this after init_params
-
1639  // because that is where we set terrain_type
-
1640  if (init_type == InitType::Real && solverChoice.terrain_type == TerrainType::Moving) {
-
1641  Abort("Moving terrain is not supported with init real");
-
1642  }
-
1643 
-
1644  // What type of land surface model to use
-
1645  // NOTE: Must be checked after init_params
-
1646  if (solverChoice.lsm_type == LandSurfaceType::SLM) {
-
1647  lsm.SetModel<SLM>();
-
1648  Print() << "SLM land surface model!\n";
-
1649  } else if (solverChoice.lsm_type == LandSurfaceType::MM5) {
-
1650  lsm.SetModel<MM5>();
-
1651  Print() << "MM5 land surface model!\n";
-
1652 #ifdef ERF_USE_NOAH
-
1653  } else if (solverChoice.lsm_type == LandSurfaceType::NOAH) {
-
1654  lsm.SetModel<NOAH>();
-
1655  Print() << "NOAH land surface model!\n";
-
1656 #endif
-
1657  } else if (solverChoice.lsm_type == LandSurfaceType::None) {
-
1658  lsm.SetModel<NullSurf>();
-
1659  Print() << "Null land surface model!\n";
-
1660  } else {
-
1661  Abort("Dont know this LandSurfaceType!") ;
-
1662  }
-
1663 
-
1664  if (verbose > 0) {
-
1665  solverChoice.display(max_level);
-
1666  }
-
1667 
-
1668  ParameterSanityChecks();
-
1669 }
+
1638  solverChoice.init_params(max_level);
+
1639 
+
1640  // No moving terrain with init real (we must do this after init_params
+
1641  // because that is where we set terrain_type
+
1642  if (init_type == InitType::Real && solverChoice.terrain_type == TerrainType::Moving) {
+
1643  Abort("Moving terrain is not supported with init real");
+
1644  }
+
1645 
+
1646  // What type of land surface model to use
+
1647  // NOTE: Must be checked after init_params
+
1648  if (solverChoice.lsm_type == LandSurfaceType::SLM) {
+
1649  lsm.SetModel<SLM>();
+
1650  Print() << "SLM land surface model!\n";
+
1651  } else if (solverChoice.lsm_type == LandSurfaceType::MM5) {
+
1652  lsm.SetModel<MM5>();
+
1653  Print() << "MM5 land surface model!\n";
+
1654 #ifdef ERF_USE_NOAH
+
1655  } else if (solverChoice.lsm_type == LandSurfaceType::NOAH) {
+
1656  lsm.SetModel<NOAH>();
+
1657  Print() << "NOAH land surface model!\n";
+
1658 #endif
+
1659  } else if (solverChoice.lsm_type == LandSurfaceType::None) {
+
1660  lsm.SetModel<NullSurf>();
+
1661  Print() << "Null land surface model!\n";
+
1662  } else {
+
1663  Abort("Dont know this LandSurfaceType!") ;
+
1664  }
+
1665 
+
1666  if (verbose > 0) {
+
1667  solverChoice.display(max_level);
+
1668  }
+
1669 
+
1670  ParameterSanityChecks();
+
1671 }
ERF::metgrid_basic_linear
bool metgrid_basic_linear
Definition: ERF.H:1060
ERF::boxes_at_level
amrex::Vector< amrex::Vector< amrex::Box > > boxes_at_level
Definition: ERF.H:711
ERF::metgrid_debug_msf
bool metgrid_debug_msf
Definition: ERF.H:1058
@@ -12981,7 +12986,7 @@

ERF::metgrid_debug_dry
bool metgrid_debug_dry
Definition: ERF.H:1056

ERF::metgrid_debug_isothermal
bool metgrid_debug_isothermal
Definition: ERF.H:1055
ERF::metgrid_debug_psfc
bool metgrid_debug_psfc
Definition: ERF.H:1057
-
ERF::ParameterSanityChecks
void ParameterSanityChecks()
Definition: ERF.cpp:1673
+
ERF::ParameterSanityChecks
void ParameterSanityChecks()
Definition: ERF.cpp:1675
ERF::m_expand_plotvars_to_unif_rr
bool m_expand_plotvars_to_unif_rr
Definition: ERF.H:924
ERF::num_boxes_at_level
amrex::Vector< int > num_boxes_at_level
Definition: ERF.H:709
ERF::check_file
std::string check_file
Definition: ERF.H:938
@@ -12992,9 +12997,9 @@

NOAH
Definition: ERF_NOAH.H:20

NullSurf
Definition: ERF_NullSurf.H:8
SLM
Definition: ERF_SLM.H:26
-
SolverChoice::pp_prefix
std::string pp_prefix
Definition: ERF_DataStruct.H:543
+
SolverChoice::pp_prefix
std::string pp_prefix
Definition: ERF_DataStruct.H:548
SolverChoice::init_params
void init_params(int max_level)
Definition: ERF_DataStruct.H:80
-
SolverChoice::display
void display(int max_level)
Definition: ERF_DataStruct.H:406
+
SolverChoice::display
void display(int max_level)
Definition: ERF_DataStruct.H:411

Here is the call graph for this function:
@@ -13542,30 +13547,30 @@

-
1251 {
-
1252  // TODO: This could be deleted since ba/dm are not created yet?
-
1253  for (int lev = 0; lev <= finest_level; ++lev)
-
1254  {
-
1255  auto& lev_new = vars_new[lev];
-
1256  auto& lev_old = vars_old[lev];
-
1257  lev_new[Vars::cons].setVal(0.); lev_old[Vars::cons].setVal(0.);
-
1258  lev_new[Vars::xvel].setVal(0.); lev_old[Vars::xvel].setVal(0.);
-
1259  lev_new[Vars::yvel].setVal(0.); lev_old[Vars::yvel].setVal(0.);
-
1260  lev_new[Vars::zvel].setVal(0.); lev_old[Vars::zvel].setVal(0.);
-
1261  }
-
1262 
-
1263 #ifdef ERF_USE_NETCDF
-
1264  if (restart_type == "netcdf") {
-
1265  ReadNCCheckpointFile();
-
1266  }
-
1267 #endif
-
1268  if (restart_type == "native") {
-
1269  ReadCheckpointFile();
-
1270  }
-
1271 
-
1272  // We set this here so that we don't over-write the checkpoint file we just started from
-
1273  last_check_file_step = istep[0];
-
1274 }
+
1253 {
+
1254  // TODO: This could be deleted since ba/dm are not created yet?
+
1255  for (int lev = 0; lev <= finest_level; ++lev)
+
1256  {
+
1257  auto& lev_new = vars_new[lev];
+
1258  auto& lev_old = vars_old[lev];
+
1259  lev_new[Vars::cons].setVal(0.); lev_old[Vars::cons].setVal(0.);
+
1260  lev_new[Vars::xvel].setVal(0.); lev_old[Vars::xvel].setVal(0.);
+
1261  lev_new[Vars::yvel].setVal(0.); lev_old[Vars::yvel].setVal(0.);
+
1262  lev_new[Vars::zvel].setVal(0.); lev_old[Vars::zvel].setVal(0.);
+
1263  }
+
1264 
+
1265 #ifdef ERF_USE_NETCDF
+
1266  if (restart_type == "netcdf") {
+
1267  ReadNCCheckpointFile();
+
1268  }
+
1269 #endif
+
1270  if (restart_type == "native") {
+
1271  ReadCheckpointFile();
+
1272  }
+
1273 
+
1274  // We set this here so that we don't over-write the checkpoint file we just started from
+
1275  last_check_file_step = istep[0];
+
1276 }
ERF::ReadCheckpointFile
void ReadCheckpointFile()
Definition: ERF_Checkpoint.cpp:273
@@ -16843,47 +16848,47 @@

-
1969 {
-
1970  bool write_now = false;
-
1971 
-
1972  if ( plot_int > 0 && (nstep % plot_int == 0) ) {
-
1973  write_now = true;
-
1974 
-
1975  } else if (plot_per > 0.0) {
+
1971 {
+
1972  bool write_now = false;
+
1973 
+
1974  if ( plot_int > 0 && (nstep % plot_int == 0) ) {
+
1975  write_now = true;
1976 
-
1977  // Check to see if we've crossed a plot_per interval by comparing
-
1978  // the number of intervals that have elapsed for both the current
-
1979  // time and the time at the beginning of this timestep.
-
1980 
-
1981  const Real eps = std::numeric_limits<Real>::epsilon() * Real(10.0) * std::abs(cur_time);
+
1977  } else if (plot_per > 0.0) {
+
1978 
+
1979  // Check to see if we've crossed a plot_per interval by comparing
+
1980  // the number of intervals that have elapsed for both the current
+
1981  // time and the time at the beginning of this timestep.
1982 
-
1983  int num_per_old = static_cast<int>(std::floor((cur_time-eps-dt_lev) / plot_per));
-
1984  int num_per_new = static_cast<int>(std::floor((cur_time-eps ) / plot_per));
-
1985 
-
1986  // Before using these, however, we must test for the case where we're
-
1987  // within machine epsilon of the next interval. In that case, increment
-
1988  // the counter, because we have indeed reached the next plot_per interval
-
1989  // at this point.
-
1990 
-
1991  const Real next_plot_time = (num_per_old + 1) * plot_per;
+
1983  const Real eps = std::numeric_limits<Real>::epsilon() * Real(10.0) * std::abs(cur_time);
+
1984 
+
1985  int num_per_old = static_cast<int>(std::floor((cur_time-eps-dt_lev) / plot_per));
+
1986  int num_per_new = static_cast<int>(std::floor((cur_time-eps ) / plot_per));
+
1987 
+
1988  // Before using these, however, we must test for the case where we're
+
1989  // within machine epsilon of the next interval. In that case, increment
+
1990  // the counter, because we have indeed reached the next plot_per interval
+
1991  // at this point.
1992 
-
1993  if ((num_per_new == num_per_old) && std::abs(cur_time - next_plot_time) <= eps)
-
1994  {
-
1995  num_per_new += 1;
-
1996  }
-
1997 
-
1998  // Similarly, we have to account for the case where the old time is within
-
1999  // machine epsilon of the beginning of this interval, so that we don't double
-
2000  // count that time threshold -- we already plotted at that time on the last timestep.
-
2001 
-
2002  if ((num_per_new != num_per_old) && std::abs((cur_time - dt_lev) - next_plot_time) <= eps)
-
2003  num_per_old += 1;
-
2004 
-
2005  if (num_per_old != num_per_new)
-
2006  write_now = true;
-
2007  }
-
2008  return write_now;
-
2009 }
+
1993  const Real next_plot_time = (num_per_old + 1) * plot_per;
+
1994 
+
1995  if ((num_per_new == num_per_old) && std::abs(cur_time - next_plot_time) <= eps)
+
1996  {
+
1997  num_per_new += 1;
+
1998  }
+
1999 
+
2000  // Similarly, we have to account for the case where the old time is within
+
2001  // machine epsilon of the beginning of this interval, so that we don't double
+
2002  // count that time threshold -- we already plotted at that time on the last timestep.
+
2003 
+
2004  if ((num_per_new != num_per_old) && std::abs((cur_time - dt_lev) - next_plot_time) <= eps)
+
2005  num_per_old += 1;
+
2006 
+
2007  if (num_per_old != num_per_new)
+
2008  write_now = true;
+
2009  }
+
2010  return write_now;
+
2011 }

diff --git a/classERF__coll__graph.map b/classERF__coll__graph.map index a94e53b0ee..5ee8b83522 100644 --- a/classERF__coll__graph.map +++ b/classERF__coll__graph.map @@ -14,9 +14,9 @@ - + - + @@ -25,18 +25,18 @@ - + - - - + + + - + diff --git a/classERF__coll__graph.md5 b/classERF__coll__graph.md5 index 7bc781f436..8cdb6adbac 100644 --- a/classERF__coll__graph.md5 +++ b/classERF__coll__graph.md5 @@ -1 +1 @@ -bba57de434dad1b11edfd11b35951875 \ No newline at end of file +23a428321b2f796c1d675d65c3934598 \ No newline at end of file diff --git a/classERF__coll__graph.png b/classERF__coll__graph.png index b2104b02b1..d41379f0ef 100644 Binary files a/classERF__coll__graph.png and b/classERF__coll__graph.png differ diff --git a/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.map b/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.map index 7406c79d34..488b00249d 100644 --- a/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.map +++ b/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.map @@ -22,13 +22,13 @@ - + - - + + diff --git a/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.md5 b/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.md5 index 12da834ef5..cb2e08a26a 100644 --- a/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.md5 +++ b/classERF_af836d1bb05ac4c9f535358e14714f13e_cgraph.md5 @@ -1 +1 @@ -acffe8c7cc61b6983be4f38b323a8989 \ No newline at end of file +01bebb6e71780f076f710dca69d053a5 \ No newline at end of file diff --git a/classKessler.html b/classKessler.html index 541a64f923..111ea635e1 100644 --- a/classKessler.html +++ b/classKessler.html @@ -682,7 +682,7 @@

MicVar_Kess::qt
@ qt
Definition: ERF_Kessler.H:35
MicVar_Kess::rain_accum
@ rain_accum
Definition: ERF_Kessler.H:41
MicVar_Kess::qv
@ qv
Definition: ERF_Kessler.H:36
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628

Referenced by Advance().

@@ -927,10 +927,10 @@

Kessler::m_gOcp
amrex::Real m_gOcp
Definition: ERF_Kessler.H:174

Kessler::m_fac_fus
amrex::Real m_fac_fus
Definition: ERF_Kessler.H:172
Kessler::m_axis
int m_axis
Definition: ERF_Kessler.H:165
-
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:577
-
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:637
-
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:636
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:582
+
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:642
+
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:641
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
diff --git a/classMultiBlockContainer.html b/classMultiBlockContainer.html index e6d71ed57f..ef879ad542 100644 --- a/classMultiBlockContainer.html +++ b/classMultiBlockContainer.html @@ -131,7 +131,7 @@ - + diff --git a/classMultiBlockContainer__coll__graph.map b/classMultiBlockContainer__coll__graph.map index a10b745879..fee2c8acca 100644 --- a/classMultiBlockContainer__coll__graph.map +++ b/classMultiBlockContainer__coll__graph.map @@ -33,7 +33,7 @@ - + diff --git a/classMultiBlockContainer__coll__graph.md5 b/classMultiBlockContainer__coll__graph.md5 index e7d55edd79..b01a4c67ce 100644 --- a/classMultiBlockContainer__coll__graph.md5 +++ b/classMultiBlockContainer__coll__graph.md5 @@ -1 +1 @@ -531952542b39227452aa5a1b10a1fe42 \ No newline at end of file +21a42e6434e7710bd9bd9dd6adc00af6 \ No newline at end of file diff --git a/classMultiBlockContainer__coll__graph.png b/classMultiBlockContainer__coll__graph.png index 4a3be83692..a4008783ea 100644 Binary files a/classMultiBlockContainer__coll__graph.png and b/classMultiBlockContainer__coll__graph.png differ diff --git a/classProblemBase.html b/classProblemBase.html index cf174effa6..52f7a0a01b 100644 --- a/classProblemBase.html +++ b/classProblemBase.html @@ -636,7 +636,7 @@

335 
336  SolverChoice::set_flat_terrain_flag();
337  }
-
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:532
+
SolverChoice::set_flat_terrain_flag
static void set_flat_terrain_flag()
Definition: ERF_DataStruct.H:537
Here is the call graph for this function:
diff --git a/classSAM.html b/classSAM.html index ea05e0294b..b9b933e02c 100644 --- a/classSAM.html +++ b/classSAM.html @@ -617,7 +617,7 @@

MicVar::theta
@ theta
Definition: ERF_SAM.H:31

MicVar::qcl
@ qcl
Definition: ERF_SAM.H:38
MicVar::tabs
@ tabs
Definition: ERF_SAM.H:32
-
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:623
+
SolverChoice::moisture_type
MoistureType moisture_type
Definition: ERF_DataStruct.H:628

Referenced by Advance().

@@ -1116,11 +1116,11 @@

CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:21

SAM::doprecip
bool doprecip
Definition: ERF_SAM.H:311
SAM::docloud
bool docloud
Definition: ERF_SAM.H:311
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:578
-
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:577
-
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:637
-
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:636
-
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:634
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: ERF_DataStruct.H:583
+
SolverChoice::c_p
amrex::Real c_p
Definition: ERF_DataStruct.H:582
+
SolverChoice::do_precip
bool do_precip
Definition: ERF_DataStruct.H:642
+
SolverChoice::do_cloud
bool do_cloud
Definition: ERF_DataStruct.H:641
+
SolverChoice::ave_plane
int ave_plane
Definition: ERF_DataStruct.H:639
diff --git a/functions_c.html b/functions_c.html index 8960ed748e..aa9aac708a 100644 --- a/functions_c.html +++ b/functions_c.html @@ -371,8 +371,8 @@

- c -

    : ABLMost
  • compute_pblh() -: ABLMost -, MYNNPBLH +: ABLMost +, MYNNPBLH
  • compute_plane_averages() : MOSTAverage diff --git a/functions_d.html b/functions_d.html index 73269e4091..0f8e840829 100644 --- a/functions_d.html +++ b/functions_d.html @@ -133,12 +133,12 @@

    - d -

    • DataLog() : ERF
      • -
    • DataLogName() -: ERF -
    • datalogname : ERF
      • +
    • DataLogName() +: ERF +
    • debug() : TurbulentPerturbation
      • diff --git a/functions_func_c.html b/functions_func_c.html index a4110614d7..821b82c89a 100644 --- a/functions_func_c.html +++ b/functions_func_c.html @@ -178,8 +178,8 @@

      - c -

        : ABLMost
      • compute_pblh() -: ABLMost -, MYNNPBLH +: ABLMost +, MYNNPBLH
      • compute_plane_averages() : MOSTAverage diff --git a/functions_func_u.html b/functions_func_u.html index c9406e0679..434d901bae 100644 --- a/functions_func_u.html +++ b/functions_func_u.html @@ -124,7 +124,7 @@

        - u -

          , Microphysics
        • update_pblh() -: ABLMost +: ABLMost
        • update_rhoqt_sources() : ProblemBase diff --git a/functions_r.html b/functions_r.html index eb858c2aed..7bac04477d 100644 --- a/functions_r.html +++ b/functions_r.html @@ -142,12 +142,12 @@

          - r -

          • rad_gas_index() : RadConstants
            • -
          • Radiation() -: Radiation -
          • radiation : Radiation
            • +
          • Radiation() +: Radiation +
          • radiation_driver_lw() : Radiation
            • @@ -356,6 +356,9 @@

            - r -

            • rhod_integ : InputSoundingData
              • +
            • RhoQc_comp +: SolverChoice +
            • RhoQr_comp : SolverChoice
              • diff --git a/functions_s.html b/functions_s.html index cdce83bf55..5dd7ca4d53 100644 --- a/functions_s.html +++ b/functions_s.html @@ -109,30 +109,30 @@

              - s -

              • SampleData() : SampleData
                • -
              • SampleLine() -: ERF -
              • sampleline : ERF
                • -
              • SampleLineLog() -: ERF +
              • SampleLine() +: ERF
              • samplelinelog : ERF
                • +
              • SampleLineLog() +: ERF +
              • SampleLineLogName() : ERF
              • samplelinelogname : ERF
                • -
              • SamplePoint() -: ERF -
              • samplepoint : ERF
                • +
              • SamplePoint() +: ERF +
              • SamplePointLog() : ERF
                • diff --git a/functions_u.html b/functions_u.html index 2aadd5cd6a..1495f19959 100644 --- a/functions_u.html +++ b/functions_u.html @@ -145,7 +145,7 @@

                - u -

                  , Microphysics
                • update_pblh() -: ABLMost +: ABLMost
                • update_rhoqt_sources() : ProblemBase diff --git a/functions_vars_r.html b/functions_vars_r.html index db770d249b..ae7c42c009 100644 --- a/functions_vars_r.html +++ b/functions_vars_r.html @@ -220,6 +220,9 @@

                  - r -

                  • rhod_integ : InputSoundingData
                    • +
                  • RhoQc_comp +: SolverChoice +
                  • RhoQr_comp : SolverChoice
                    • diff --git a/globals_c.html b/globals_c.html index 1b0b56a6d5..28e99b008d 100644 --- a/globals_c.html +++ b/globals_c.html @@ -190,15 +190,15 @@

                    - c -

                      : ERF_TerrainMetrics.H
                    • ComputeDiffusivityMYNN25() -: ERF_ComputeDiffusivityMYNN25.cpp -, ERF_PBLModels.H +: ERF_ComputeDiffusivityMYNN25.cpp +, ERF_PBLModels.H
                    • ComputeDiffusivityYSU() : ERF_ComputeDiffusivityYSU.cpp , ERF_PBLModels.H
                    • ComputeQKESourceTerms() -: ERF_PBLModels.H +: ERF_PBLModels.H
                    • ComputeSmnSmn() : ERF_EddyViscosity.H @@ -235,7 +235,7 @@

                      - c -

                        : ERF_ComputeTurbulentViscosity.cpp
                      • ComputeVerticalDerivativesPBL() -: ERF_PBLModels.H +: ERF_PBLModels.H
                      • cons_to_prim : ERF_TI_utils.H diff --git a/globals_func_c.html b/globals_func_c.html index 4814aa0046..8df59da705 100644 --- a/globals_func_c.html +++ b/globals_func_c.html @@ -187,15 +187,15 @@

                        - c -

                          : ERF_TerrainMetrics.H
                        • ComputeDiffusivityMYNN25() -: ERF_ComputeDiffusivityMYNN25.cpp -, ERF_PBLModels.H +: ERF_ComputeDiffusivityMYNN25.cpp +, ERF_PBLModels.H
                        • ComputeDiffusivityYSU() : ERF_ComputeDiffusivityYSU.cpp , ERF_PBLModels.H
                        • ComputeQKESourceTerms() -: ERF_PBLModels.H +: ERF_PBLModels.H
                        • ComputeSmnSmn() : ERF_EddyViscosity.H @@ -232,7 +232,7 @@

                          - c -

                            : ERF_ComputeTurbulentViscosity.cpp
                          • ComputeVerticalDerivativesPBL() -: ERF_PBLModels.H +: ERF_PBLModels.H
                          • containerHasElement() : ERF_Plotfile.cpp diff --git a/globals_func_t.html b/globals_func_t.html index 7e1ed5fc5c..314d60a096 100644 --- a/globals_func_t.html +++ b/globals_func_t.html @@ -101,7 +101,7 @@

                            - t -

                              : ERF_TerrainPoisson_3D_K.H
                            • Thetav() -: ERF_Thetav.H +: ERF_Thetav.H
                            • TileNoZ() : ERF_TileNoZ.H diff --git a/globals_t.html b/globals_t.html index f423db85d6..a53d6d0039 100644 --- a/globals_t.html +++ b/globals_t.html @@ -122,7 +122,7 @@

                              - t -

                                : ERF_DataStruct.H
                              • Thetav() -: ERF_Thetav.H +: ERF_Thetav.H
                              • TileNoZ() : ERF_TileNoZ.H diff --git a/navtreedata.js b/navtreedata.js index d1b96b72fd..ab1ba573c7 100644 --- a/navtreedata.js +++ b/navtreedata.js @@ -86,7 +86,7 @@ var NAVTREEINDEX = "functions_i.html", "structInputSoundingData.html", "structSolverChoice.html#a5aed4016dd7d17a2d2904c60af59ae9d", -"structWENO__Z5.html#ad08f189935f50294739c74db97fe7f81" +"structWENO__Z5.html#ab4cfe75de30306d2462c33b4797fa570" ]; var SYNCONMSG = 'click to disable panel synchronisation'; diff --git a/navtreeindex0.js b/navtreeindex0.js index 77f12178fe..79f12d4b16 100644 --- a/navtreeindex0.js +++ b/navtreeindex0.js @@ -115,7 +115,7 @@ var NAVTREEINDEX0 = "ERF__CloudRadProps_8cpp.html":[3,0,1,14,4], "ERF__CloudSAM_8cpp.html":[3,0,1,9,2,0], "ERF__ComputeDiffusivityMYNN25_8cpp.html":[3,0,1,12,0], -"ERF__ComputeDiffusivityMYNN25_8cpp.html#a4b51698073bd67922bc46675fce968cf":[3,0,1,12,0,0], +"ERF__ComputeDiffusivityMYNN25_8cpp.html#a391c08e1e3f5dbbe1bc501f0ad9ee26f":[3,0,1,12,0,0], "ERF__ComputeDiffusivityYSU_8cpp.html":[3,0,1,12,1], "ERF__ComputeDiffusivityYSU_8cpp.html#a22f1a268ea7d16d0817f082a47ffc98a":[3,0,1,12,1,0], "ERF__ComputeDivergence_8cpp.html":[3,0,1,8,0], diff --git a/navtreeindex10.js b/navtreeindex10.js index 2eb604d46c..9a4b480a7e 100644 --- a/navtreeindex10.js +++ b/navtreeindex10.js @@ -212,8 +212,8 @@ var NAVTREEINDEX10 = "dir_fbd11baa4baa1a8b78c4a3d08373cbc6.html":[3,0,1,11], "dir_fc0c15590968603ac439df7b0a572228.html":[3,0,1,3], "files.html":[3,0], -"functions.html":[2,3,0], "functions.html":[2,3,0,0], +"functions.html":[2,3,0], "functions_b.html":[2,3,0,1], "functions_c.html":[2,3,0,2], "functions_d.html":[2,3,0,3], @@ -221,8 +221,8 @@ var NAVTREEINDEX10 = "functions_enum.html":[2,3,4], "functions_eval.html":[2,3,5], "functions_f.html":[2,3,0,5], -"functions_func.html":[2,3,1,0], "functions_func.html":[2,3,1], +"functions_func.html":[2,3,1,0], "functions_func_b.html":[2,3,1,1], "functions_func_c.html":[2,3,1,2], "functions_func_d.html":[2,3,1,3], diff --git a/navtreeindex11.js b/navtreeindex11.js index 3c2a354cd9..8303a411e6 100644 --- a/navtreeindex11.js +++ b/navtreeindex11.js @@ -15,8 +15,8 @@ var NAVTREEINDEX11 = "functions_type.html":[2,3,3], "functions_u.html":[2,3,0,20], "functions_v.html":[2,3,0,21], -"functions_vars.html":[2,3,2,0], "functions_vars.html":[2,3,2], +"functions_vars.html":[2,3,2,0], "functions_vars_b.html":[2,3,2,1], "functions_vars_c.html":[2,3,2,2], "functions_vars_d.html":[2,3,2,3], @@ -47,8 +47,8 @@ var NAVTREEINDEX11 = "functions_y.html":[2,3,0,24], "functions_z.html":[2,3,0,25], "functions_~.html":[2,3,0,26], -"globals.html":[3,1,0,0], "globals.html":[3,1,0], +"globals.html":[3,1,0,0], "globals_b.html":[3,1,0,1], "globals_c.html":[3,1,0,2], "globals_d.html":[3,1,0,3], diff --git a/navtreeindex12.js b/navtreeindex12.js index 8f2d094a66..9b183ff7a8 100644 --- a/navtreeindex12.js +++ b/navtreeindex12.js @@ -90,7 +90,7 @@ var NAVTREEINDEX12 = "structMYNNPBLH.html":[2,0,54], "structMYNNPBLH.html#a12e1467dfe07775e2ef9c8a57ae473ad":[2,0,54,2], "structMYNNPBLH.html#a16169bdfadcc27219d7c6dde54ef6bd9":[2,0,54,3], -"structMYNNPBLH.html#a3911e13c78754ba2bf50e3e94f74bba8":[2,0,54,0], +"structMYNNPBLH.html#a50906c85ebea73eda08db05473370ccf":[2,0,54,0], "structMYNNPBLH.html#aa607f6576c6029c132a0f7b33aec72f1":[2,0,54,5], "structMYNNPBLH.html#ad830dc7c3282256b729ad09b8cc0572e":[2,0,54,4], "structMYNNPBLH.html#adf4c7c74040b1b560b509f1c035edd32":[2,0,54,1], @@ -219,35 +219,35 @@ var NAVTREEINDEX12 = "structSolverChoice.html":[2,0,78], "structSolverChoice.html#a06a0dd1c8f7c1ed73a4f8d24b6b31cdf":[2,0,78,44], "structSolverChoice.html#a0a4f1c55ea1e3a7d50f926ee0d20a21c":[2,0,78,29], -"structSolverChoice.html#a0e2a9a1ec68a94b24dc8f3f6d8bb7af0":[2,0,78,67], +"structSolverChoice.html#a0e2a9a1ec68a94b24dc8f3f6d8bb7af0":[2,0,78,68], 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                                This is the complete list of members for MYNNPBLH, including all inherited members.

                                - + diff --git a/structMYNNPBLH.html b/structMYNNPBLH.html index 8218897119..f8617fe261 100644 --- a/structMYNNPBLH.html +++ b/structMYNNPBLH.html @@ -104,8 +104,8 @@
                                compute_pblh(const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQr_comp) constMYNNPBLHinline
                                compute_pblh(const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp) constMYNNPBLHinline
                                sbl_dampMYNNPBLHstatic
                                sbl_limMYNNPBLHstatic
                                theta_incr_landMYNNPBLHstatic
                                - - + +

                                Public Member Functions

                                AMREX_GPU_HOST AMREX_FORCE_INLINE void compute_pblh (const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQr_comp) const
                                 
                                AMREX_GPU_HOST AMREX_FORCE_INLINE void compute_pblh (const amrex::Geometry &geom, const amrex::MultiFab *z_phys_cc, amrex::MultiFab *pblh, const amrex::MultiFab &cons, const amrex::iMultiFab *lmask, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp) const
                                 
                                @@ -121,8 +121,8 @@

                                Static Public Attributes

                                 

                                Member Function Documentation

                                - -

                                ◆ compute_pblh()

                                + +

                                ◆ compute_pblh()

                                @@ -166,6 +166,12 @@

                                const int  RhoQv_comp, + + + + const int  + RhoQc_comp, + @@ -184,254 +190,254 @@

                                -
                                29  {
                                -
                                30 #if 0
                                -
                                31  // NOTE: Cannot use ReduceToPlane because it clips the box to the
                                -
                                32  // validbox only, i.e., lateral ghost cells aren't updated
                                -
                                33  int dir = 2; // z
                                -
                                34  auto const& cons_arrs = cons.const_arrays();
                                -
                                35  auto thetav_min = amrex::ReduceToPlane<amrex::ReduceOpMin,amrex::Real>(dir, bxlow, cons,
                                -
                                36  [=] AMREX_GPU_DEVICE (int box_no, int i, int j, int k) -> amrex::Real
                                -
                                37  {
                                -
                                38  return Thetav(i,j,k,cons_arrs[box_no],RhoQv_comp,RhoQr_comp);
                                -
                                39  });
                                -
                                40 #endif
                                -
                                41 
                                -
                                42  // Create 2D multifabs like pblh
                                -
                                43  auto const& ba = pblh->boxArray();
                                -
                                44  auto const& dm = pblh->DistributionMap();
                                -
                                45  auto const& ng = pblh->nGrowVect();
                                -
                                46 
                                -
                                47  amrex::MultiFab min_thetav(ba,dm,1,ng);
                                -
                                48  min_thetav.setVal(1.E34);
                                -
                                49 
                                -
                                50  amrex::MultiFab pblh_tke(ba,dm,1,ng);
                                -
                                51  pblh_tke.setVal(0);
                                -
                                52 
                                -
                                53  pblh->setVal(0);
                                -
                                54 
                                -
                                55  // Now, loop over columns...
                                -
                                56  for (amrex::MFIter mfi(cons,TileNoZ()); mfi.isValid(); ++mfi)
                                -
                                57  {
                                -
                                58  const amrex::Box& domain = geom.Domain();
                                -
                                59  amrex::Box gtbx = mfi.growntilebox();
                                -
                                60  gtbx.setSmall(2,domain.smallEnd(2)); // don't loop over ghost cells
                                -
                                61  gtbx.setBig(2,domain.bigEnd(2)); // in z
                                -
                                62 
                                -
                                63  auto min_thv_arr = min_thetav.array(mfi);
                                -
                                64  auto pblh_arr = pblh->array(mfi);
                                -
                                65  auto pblh_tke_arr = pblh_tke.array(mfi);
                                -
                                66 
                                -
                                67  const auto cons_arr = cons.const_array(mfi);
                                -
                                68  const auto lmask_arr = (lmask) ? lmask->const_array(mfi) : amrex::Array4<int> {};
                                -
                                69 
                                -
                                70  // -----------------------------------------------------
                                -
                                71  // WITH terrain/grid stretching
                                -
                                72  // -----------------------------------------------------
                                -
                                73  if (z_phys_cc)
                                -
                                74  {
                                -
                                75  const auto zphys_arr = z_phys_cc->const_array(mfi);
                                -
                                76 
                                -
                                77  // Need to sort out ghost cell differences (z_phys_cc has ng=1)
                                -
                                78  int imin = lbound(zphys_arr).x;
                                -
                                79  int jmin = lbound(zphys_arr).y;
                                -
                                80  int imax = ubound(zphys_arr).x;
                                -
                                81  int jmax = ubound(zphys_arr).y;
                                -
                                82 
                                -
                                83  // Find minimum thetav in the surface layer (this updates
                                -
                                84  // ghost cells, too)
                                -
                                85  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                -
                                86  {
                                -
                                87  int ii = amrex::max(amrex::min(i,imax),imin);
                                -
                                88  int jj = amrex::max(amrex::min(j,jmax),jmin);
                                -
                                89 
                                -
                                90  if (zphys_arr(ii,jj,k) < thetamin_height) {
                                -
                                91  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                92  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
                                -
                                93  }
                                -
                                94  });
                                -
                                95 
                                -
                                96  // This depends on TileNoZ and k increasing monotonically
                                -
                                97  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                -
                                98  {
                                -
                                99  int ii = amrex::max(amrex::min(i,imax),imin);
                                -
                                100  int jj = amrex::max(amrex::min(j,jmax),jmin);
                                -
                                101 
                                -
                                102  if (pblh_arr(i,j,0) == 0)
                                -
                                103  {
                                -
                                104  //
                                -
                                105  // Find PBL height based on thetav increase (best for CBLs)
                                -
                                106  //
                                -
                                107  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                108  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                109 
                                -
                                110  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
                                -
                                111  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
                                -
                                112  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
                                -
                                113  {
                                -
                                114  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                -
                                115  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
                                -
                                116  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
                                -
                                117  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
                                -
                                118  }
                                -
                                119  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
                                -
                                120  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
                                -
                                121  {
                                -
                                122  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                -
                                123  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
                                -
                                124  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
                                -
                                125  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
                                -
                                126  }
                                -
                                127  }
                                -
                                128  if (pblh_tke_arr(i,j,0) == 0)
                                -
                                129  {
                                -
                                130  //
                                -
                                131  // Find PBL height based on TKE (for SBLs only)
                                -
                                132  //
                                -
                                133  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
                                -
                                134  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
                                -
                                135  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                -
                                136  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
                                -
                                137  amrex::Real TKEeps = 0.05 * maxtke;
                                -
                                138  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
                                -
                                139 
                                -
                                140  if ((tke1 <= TKEeps) && (tke > TKEeps))
                                -
                                141  {
                                -
                                142  // Interpolate to get lowest height where TKE -> 0
                                -
                                143  pblh_tke_arr(i,j,0) = zphys_arr(ii,jj,k)
                                -
                                144  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(tke1-tke)
                                -
                                145  * (TKEeps - tke);
                                -
                                146  }
                                -
                                147  }
                                -
                                148  });
                                -
                                149  }
                                -
                                150  else
                                -
                                151  // -----------------------------------------------------
                                -
                                152  // NO terrain
                                -
                                153  // -----------------------------------------------------
                                -
                                154  {
                                -
                                155  const amrex::Real dz_no_terrain = geom.CellSize(2);
                                -
                                156 
                                -
                                157  // Find minimum thetav in the surface layer (this updates
                                -
                                158  // ghost cells, too)
                                -
                                159  // - box size is known a priori
                                -
                                160  int kmax = static_cast<int>(thetamin_height / dz_no_terrain);
                                -
                                161  AMREX_ASSERT(kmax > 0);
                                -
                                162  amrex::Box gtbxlow = gtbx;
                                -
                                163  gtbxlow.setBig(2,kmax);
                                -
                                164 
                                -
                                165  ParallelFor(gtbxlow, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                -
                                166  {
                                -
                                167  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                168  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
                                -
                                169  });
                                -
                                170 
                                -
                                171  // This depends on TileNoZ and k increasing monotonically
                                -
                                172  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                -
                                173  {
                                -
                                174  if (pblh_arr(i,j,0) == 0)
                                -
                                175  {
                                -
                                176  //
                                -
                                177  // Find PBL height based on thetav increase (best for CBLs)
                                -
                                178  //
                                -
                                179  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                180  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQr_comp);
                                -
                                181 
                                -
                                182  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
                                -
                                183  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
                                -
                                184  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
                                -
                                185  {
                                -
                                186  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                -
                                187  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                -
                                188  + dz_no_terrain/(thv1-thv)
                                -
                                189  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
                                -
                                190  }
                                -
                                191  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
                                -
                                192  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
                                -
                                193  {
                                -
                                194  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                -
                                195  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                -
                                196  + dz_no_terrain/(thv1-thv)
                                -
                                197  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
                                -
                                198  }
                                -
                                199  }
                                -
                                200  if (pblh_tke_arr(i,j,0) == 0)
                                -
                                201  {
                                -
                                202  //
                                -
                                203  // Find PBL height based on TKE (for SBLs only)
                                -
                                204  //
                                -
                                205  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
                                -
                                206  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
                                -
                                207  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                -
                                208  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
                                -
                                209  amrex::Real TKEeps = 0.05 * maxtke;
                                -
                                210  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
                                -
                                211 
                                -
                                212  if ((tke1 <= TKEeps) && (tke > TKEeps))
                                -
                                213  {
                                -
                                214  // Interpolate to get lowest height where TKE -> 0
                                -
                                215  pblh_tke_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                -
                                216  + dz_no_terrain/(tke1-tke) * (TKEeps - tke);
                                -
                                217  }
                                -
                                218  }
                                -
                                219  });
                                -
                                220  }
                                -
                                221  }// MFIter
                                -
                                222 
                                -
                                223  //
                                -
                                224  // Calculate hybrid PBL height
                                -
                                225  //
                                -
                                226  for (amrex::MFIter mfi(*pblh); mfi.isValid(); ++mfi)
                                -
                                227  {
                                -
                                228  const auto cons_arr = cons.const_array(mfi);
                                -
                                229  auto pblh_tke_arr = pblh_tke.array(mfi);
                                -
                                230  auto pblh_arr = pblh->array(mfi);
                                -
                                231 
                                -
                                232  amrex::Box gtbx = mfi.growntilebox();
                                -
                                233  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
                                -
                                234  {
                                -
                                235  //
                                -
                                236  // Clip PBLH_TKE to more realistic values
                                -
                                237  //
                                -
                                238  // Note from WRF MYNN-EDMF: TKE-based PBLH can be very large in cells
                                -
                                239  // with convective precipiation (> 8km!), so an artificial limit is
                                -
                                240  // imposed to not let PBLH_TKE exceed the theta_v-based PBL height
                                -
                                241  // +/- 350 m. This has no impact on 98-99% of the domain, but is the
                                -
                                242  // simplest patch that adequately addresses these extremely large
                                -
                                243  // PBLHs.
                                -
                                244  amrex::Real zi = pblh_arr(i,j,0);
                                -
                                245  pblh_tke_arr(i,j,0) = amrex::max(
                                -
                                246  amrex::min(pblh_tke_arr(i,j,0), zi+350.),
                                -
                                247  amrex::max(zi-350., 10.));
                                -
                                248 
                                -
                                249  //
                                -
                                250  // Finally, blend between the two PBLH estimates
                                -
                                251  //
                                -
                                252  amrex::Real maxqke = 2.0 * cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                -
                                253  if (maxqke > 0.05) {
                                -
                                254  amrex::Real wt = 0.5*std::tanh((zi - sbl_lim)/sbl_damp) + 0.5;
                                -
                                255  pblh_arr(i,j,0) = (1.-wt)*pblh_tke_arr(i,j,0) + wt*pblh_arr(i,j,0);
                                -
                                256  }
                                -
                                257  });
                                -
                                258  }//MFIter
                                -
                                259  }
                                +
                                30  {
                                +
                                31 #if 0
                                +
                                32  // NOTE: Cannot use ReduceToPlane because it clips the box to the
                                +
                                33  // validbox only, i.e., lateral ghost cells aren't updated
                                +
                                34  int dir = 2; // z
                                +
                                35  auto const& cons_arrs = cons.const_arrays();
                                +
                                36  auto thetav_min = amrex::ReduceToPlane<amrex::ReduceOpMin,amrex::Real>(dir, bxlow, cons,
                                +
                                37  [=] AMREX_GPU_DEVICE (int box_no, int i, int j, int k) -> amrex::Real
                                +
                                38  {
                                +
                                39  return Thetav(i,j,k,cons_arrs[box_no],RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                40  });
                                +
                                41 #endif
                                +
                                42 
                                +
                                43  // Create 2D multifabs like pblh
                                +
                                44  auto const& ba = pblh->boxArray();
                                +
                                45  auto const& dm = pblh->DistributionMap();
                                +
                                46  auto const& ng = pblh->nGrowVect();
                                +
                                47 
                                +
                                48  amrex::MultiFab min_thetav(ba,dm,1,ng);
                                +
                                49  min_thetav.setVal(1.E34);
                                +
                                50 
                                +
                                51  amrex::MultiFab pblh_tke(ba,dm,1,ng);
                                +
                                52  pblh_tke.setVal(0);
                                +
                                53 
                                +
                                54  pblh->setVal(0);
                                +
                                55 
                                +
                                56  // Now, loop over columns...
                                +
                                57  for (amrex::MFIter mfi(cons,TileNoZ()); mfi.isValid(); ++mfi)
                                +
                                58  {
                                +
                                59  const amrex::Box& domain = geom.Domain();
                                +
                                60  amrex::Box gtbx = mfi.growntilebox();
                                +
                                61  gtbx.setSmall(2,domain.smallEnd(2)); // don't loop over ghost cells
                                +
                                62  gtbx.setBig(2,domain.bigEnd(2)); // in z
                                +
                                63 
                                +
                                64  auto min_thv_arr = min_thetav.array(mfi);
                                +
                                65  auto pblh_arr = pblh->array(mfi);
                                +
                                66  auto pblh_tke_arr = pblh_tke.array(mfi);
                                +
                                67 
                                +
                                68  const auto cons_arr = cons.const_array(mfi);
                                +
                                69  const auto lmask_arr = (lmask) ? lmask->const_array(mfi) : amrex::Array4<int> {};
                                +
                                70 
                                +
                                71  // -----------------------------------------------------
                                +
                                72  // WITH terrain/grid stretching
                                +
                                73  // -----------------------------------------------------
                                +
                                74  if (z_phys_cc)
                                +
                                75  {
                                +
                                76  const auto zphys_arr = z_phys_cc->const_array(mfi);
                                +
                                77 
                                +
                                78  // Need to sort out ghost cell differences (z_phys_cc has ng=1)
                                +
                                79  int imin = lbound(zphys_arr).x;
                                +
                                80  int jmin = lbound(zphys_arr).y;
                                +
                                81  int imax = ubound(zphys_arr).x;
                                +
                                82  int jmax = ubound(zphys_arr).y;
                                +
                                83 
                                +
                                84  // Find minimum thetav in the surface layer (this updates
                                +
                                85  // ghost cells, too)
                                +
                                86  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                +
                                87  {
                                +
                                88  int ii = amrex::max(amrex::min(i,imax),imin);
                                +
                                89  int jj = amrex::max(amrex::min(j,jmax),jmin);
                                +
                                90 
                                +
                                91  if (zphys_arr(ii,jj,k) < thetamin_height) {
                                +
                                92  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                93  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
                                +
                                94  }
                                +
                                95  });
                                +
                                96 
                                +
                                97  // This depends on TileNoZ and k increasing monotonically
                                +
                                98  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                +
                                99  {
                                +
                                100  int ii = amrex::max(amrex::min(i,imax),imin);
                                +
                                101  int jj = amrex::max(amrex::min(j,jmax),jmin);
                                +
                                102 
                                +
                                103  if (pblh_arr(i,j,0) == 0)
                                +
                                104  {
                                +
                                105  //
                                +
                                106  // Find PBL height based on thetav increase (best for CBLs)
                                +
                                107  //
                                +
                                108  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                109  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                110 
                                +
                                111  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
                                +
                                112  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
                                +
                                113  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
                                +
                                114  {
                                +
                                115  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                +
                                116  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
                                +
                                117  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
                                +
                                118  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
                                +
                                119  }
                                +
                                120  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
                                +
                                121  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
                                +
                                122  {
                                +
                                123  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                +
                                124  pblh_arr(i,j,0) = zphys_arr(ii,jj,k)
                                +
                                125  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(thv1-thv)
                                +
                                126  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
                                +
                                127  }
                                +
                                128  }
                                +
                                129  if (pblh_tke_arr(i,j,0) == 0)
                                +
                                130  {
                                +
                                131  //
                                +
                                132  // Find PBL height based on TKE (for SBLs only)
                                +
                                133  //
                                +
                                134  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
                                +
                                135  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
                                +
                                136  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                +
                                137  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
                                +
                                138  amrex::Real TKEeps = 0.05 * maxtke;
                                +
                                139  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
                                +
                                140 
                                +
                                141  if ((tke1 <= TKEeps) && (tke > TKEeps))
                                +
                                142  {
                                +
                                143  // Interpolate to get lowest height where TKE -> 0
                                +
                                144  pblh_tke_arr(i,j,0) = zphys_arr(ii,jj,k)
                                +
                                145  + (zphys_arr(ii,jj,k+1)-zphys_arr(ii,jj,k))/(tke1-tke)
                                +
                                146  * (TKEeps - tke);
                                +
                                147  }
                                +
                                148  }
                                +
                                149  });
                                +
                                150  }
                                +
                                151  else
                                +
                                152  // -----------------------------------------------------
                                +
                                153  // NO terrain
                                +
                                154  // -----------------------------------------------------
                                +
                                155  {
                                +
                                156  const amrex::Real dz_no_terrain = geom.CellSize(2);
                                +
                                157 
                                +
                                158  // Find minimum thetav in the surface layer (this updates
                                +
                                159  // ghost cells, too)
                                +
                                160  // - box size is known a priori
                                +
                                161  int kmax = static_cast<int>(thetamin_height / dz_no_terrain);
                                +
                                162  AMREX_ASSERT(kmax > 0);
                                +
                                163  amrex::Box gtbxlow = gtbx;
                                +
                                164  gtbxlow.setBig(2,kmax);
                                +
                                165 
                                +
                                166  ParallelFor(gtbxlow, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                +
                                167  {
                                +
                                168  amrex::Real thv = Thetav(i,j,k,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                169  if (min_thv_arr(i,j,0) > thv) min_thv_arr(i,j,0) = thv;
                                +
                                170  });
                                +
                                171 
                                +
                                172  // This depends on TileNoZ and k increasing monotonically
                                +
                                173  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
                                +
                                174  {
                                +
                                175  if (pblh_arr(i,j,0) == 0)
                                +
                                176  {
                                +
                                177  //
                                +
                                178  // Find PBL height based on thetav increase (best for CBLs)
                                +
                                179  //
                                +
                                180  amrex::Real thv = Thetav(i,j,k ,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                181  amrex::Real thv1 = Thetav(i,j,k+1,cons_arr,RhoQv_comp,RhoQc_comp,RhoQr_comp);
                                +
                                182 
                                +
                                183  int is_land = (lmask_arr) ? lmask_arr(i,j,0) : 1;
                                +
                                184  if (is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_land)
                                +
                                185  && (thv < min_thv_arr(i,j,0) + theta_incr_land))
                                +
                                186  {
                                +
                                187  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                +
                                188  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                +
                                189  + dz_no_terrain/(thv1-thv)
                                +
                                190  * (min_thv_arr(i,j,0) + theta_incr_land - thv);
                                +
                                191  }
                                +
                                192  else if (!is_land && (thv1 >= min_thv_arr(i,j,0) + theta_incr_water)
                                +
                                193  && (thv < min_thv_arr(i,j,0) + theta_incr_water))
                                +
                                194  {
                                +
                                195  // Interpolate to get lowest height where theta = min_theta + theta_incr
                                +
                                196  pblh_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                +
                                197  + dz_no_terrain/(thv1-thv)
                                +
                                198  * (min_thv_arr(i,j,0) + theta_incr_water - thv);
                                +
                                199  }
                                +
                                200  }
                                +
                                201  if (pblh_tke_arr(i,j,0) == 0)
                                +
                                202  {
                                +
                                203  //
                                +
                                204  // Find PBL height based on TKE (for SBLs only)
                                +
                                205  //
                                +
                                206  amrex::Real tke = cons_arr(i,j,k ,RhoKE_comp) / cons_arr(i,j,k ,Rho_comp);
                                +
                                207  amrex::Real tke1 = cons_arr(i,j,k+1,RhoKE_comp) / cons_arr(i,j,k+1,Rho_comp);
                                +
                                208  amrex::Real maxtke = cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                +
                                209  // - threshold is 5% of max TKE (Kosovic & Curry 2000, JAS)
                                +
                                210  amrex::Real TKEeps = 0.05 * maxtke;
                                +
                                211  TKEeps = amrex::max(TKEeps, 0.02); // min val from WRF
                                +
                                212 
                                +
                                213  if ((tke1 <= TKEeps) && (tke > TKEeps))
                                +
                                214  {
                                +
                                215  // Interpolate to get lowest height where TKE -> 0
                                +
                                216  pblh_tke_arr(i,j,0) = (k+0.5)*dz_no_terrain
                                +
                                217  + dz_no_terrain/(tke1-tke) * (TKEeps - tke);
                                +
                                218  }
                                +
                                219  }
                                +
                                220  });
                                +
                                221  }
                                +
                                222  }// MFIter
                                +
                                223 
                                +
                                224  //
                                +
                                225  // Calculate hybrid PBL height
                                +
                                226  //
                                +
                                227  for (amrex::MFIter mfi(*pblh); mfi.isValid(); ++mfi)
                                +
                                228  {
                                +
                                229  const auto cons_arr = cons.const_array(mfi);
                                +
                                230  auto pblh_tke_arr = pblh_tke.array(mfi);
                                +
                                231  auto pblh_arr = pblh->array(mfi);
                                +
                                232 
                                +
                                233  amrex::Box gtbx = mfi.growntilebox();
                                +
                                234  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int) noexcept
                                +
                                235  {
                                +
                                236  //
                                +
                                237  // Clip PBLH_TKE to more realistic values
                                +
                                238  //
                                +
                                239  // Note from WRF MYNN-EDMF: TKE-based PBLH can be very large in cells
                                +
                                240  // with convective precipiation (> 8km!), so an artificial limit is
                                +
                                241  // imposed to not let PBLH_TKE exceed the theta_v-based PBL height
                                +
                                242  // +/- 350 m. This has no impact on 98-99% of the domain, but is the
                                +
                                243  // simplest patch that adequately addresses these extremely large
                                +
                                244  // PBLHs.
                                +
                                245  amrex::Real zi = pblh_arr(i,j,0);
                                +
                                246  pblh_tke_arr(i,j,0) = amrex::max(
                                +
                                247  amrex::min(pblh_tke_arr(i,j,0), zi+350.),
                                +
                                248  amrex::max(zi-350., 10.));
                                +
                                249 
                                +
                                250  //
                                +
                                251  // Finally, blend between the two PBLH estimates
                                +
                                252  //
                                +
                                253  amrex::Real maxqke = 2.0 * cons_arr(i,j,0 ,RhoKE_comp) / cons_arr(i,j,0 ,Rho_comp);
                                +
                                254  if (maxqke > 0.05) {
                                +
                                255  amrex::Real wt = 0.5*std::tanh((zi - sbl_lim)/sbl_damp) + 0.5;
                                +
                                256  pblh_arr(i,j,0) = (1.-wt)*pblh_tke_arr(i,j,0) + wt*pblh_arr(i,j,0);
                                +
                                257  }
                                +
                                258  });
                                +
                                259  }//MFIter
                                +
                                260  }
                                Rho_comp
                                #define Rho_comp
                                Definition: ERF_IndexDefines.H:36
                                RhoKE_comp
                                #define RhoKE_comp
                                Definition: ERF_IndexDefines.H:38
                                -
                                Thetav
                                AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQr_comp)
                                Definition: ERF_Thetav.H:10
                                +
                                Thetav
                                AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Thetav(int i, int j, int k, const amrex::Array4< const amrex::Real > &cell_data, const int RhoQv_comp, const int RhoQc_comp, const int RhoQr_comp)
                                Definition: ERF_Thetav.H:10
                                TileNoZ
                                AMREX_FORCE_INLINE amrex::IntVect TileNoZ()
                                Definition: ERF_TileNoZ.H:11
                                Vars::cons
                                @ cons
                                Definition: ERF_IndexDefines.H:129
                                -
                                MYNNPBLH::sbl_lim
                                static constexpr amrex::Real sbl_lim
                                Definition: ERF_PBLHeight.H:264
                                -
                                MYNNPBLH::theta_incr_land
                                static constexpr amrex::Real theta_incr_land
                                Definition: ERF_PBLHeight.H:262
                                -
                                MYNNPBLH::thetamin_height
                                static constexpr amrex::Real thetamin_height
                                Definition: ERF_PBLHeight.H:261
                                -
                                MYNNPBLH::theta_incr_water
                                static constexpr amrex::Real theta_incr_water
                                Definition: ERF_PBLHeight.H:263
                                -
                                MYNNPBLH::sbl_damp
                                static constexpr amrex::Real sbl_damp
                                Definition: ERF_PBLHeight.H:265
                                +
                                MYNNPBLH::sbl_lim
                                static constexpr amrex::Real sbl_lim
                                Definition: ERF_PBLHeight.H:265
                                +
                                MYNNPBLH::theta_incr_land
                                static constexpr amrex::Real theta_incr_land
                                Definition: ERF_PBLHeight.H:263
                                +
                                MYNNPBLH::thetamin_height
                                static constexpr amrex::Real thetamin_height
                                Definition: ERF_PBLHeight.H:262
                                +
                                MYNNPBLH::theta_incr_water
                                static constexpr amrex::Real theta_incr_water
                                Definition: ERF_PBLHeight.H:264
                                +
                                MYNNPBLH::sbl_damp
                                static constexpr amrex::Real sbl_damp
                                Definition: ERF_PBLHeight.H:266
                                Here is the call graph for this function:
                                -
                                - +
                                + - +
                                @@ -459,7 +465,7 @@

                                -

                                Referenced by compute_pblh().

                                +

                                Referenced by compute_pblh().

                                @@ -483,7 +489,7 @@

                                -

                                Referenced by compute_pblh().

                                +

                                Referenced by compute_pblh().

                                @@ -507,7 +513,7 @@

                                -

                                Referenced by compute_pblh().

                                +

                                Referenced by compute_pblh().

                                @@ -531,7 +537,7 @@

                                -

                                Referenced by compute_pblh().

                                +

                                Referenced by compute_pblh().

                                @@ -555,7 +561,7 @@

                                -

                                Referenced by compute_pblh().

                                +

                                Referenced by compute_pblh().

                                diff --git a/structMYNNPBLH.js b/structMYNNPBLH.js index fb1b13a0de..d15bcc1111 100644 --- a/structMYNNPBLH.js +++ b/structMYNNPBLH.js @@ -1,6 +1,6 @@ var structMYNNPBLH = [ - [ "compute_pblh", "structMYNNPBLH.html#a3911e13c78754ba2bf50e3e94f74bba8", null ], + [ "compute_pblh", "structMYNNPBLH.html#a50906c85ebea73eda08db05473370ccf", null ], [ "sbl_damp", "structMYNNPBLH.html#adf4c7c74040b1b560b509f1c035edd32", null ], [ "sbl_lim", "structMYNNPBLH.html#a12e1467dfe07775e2ef9c8a57ae473ad", null ], [ "theta_incr_land", "structMYNNPBLH.html#a16169bdfadcc27219d7c6dde54ef6bd9", null ], diff --git a/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.md5 b/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.md5 deleted file mode 100644 index 2087055729..0000000000 --- a/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.md5 +++ /dev/null @@ -1 +0,0 @@ -460663cf5a79b234ba306fc0f30f6c14 \ No newline at end of file diff --git a/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.map b/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.map similarity index 68% rename from structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.map rename to structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.map index 8132aa91bd..adbca893d3 100644 --- a/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.map +++ b/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.map @@ -1,5 +1,5 @@ - + diff --git a/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.md5 b/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.md5 new file mode 100644 index 0000000000..7daf1e4639 --- /dev/null +++ b/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.md5 @@ -0,0 +1 @@ +1943142a2550108266588f261c9eebda \ No newline at end of file diff --git a/structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.png b/structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.png similarity index 100% rename from structMYNNPBLH_a3911e13c78754ba2bf50e3e94f74bba8_cgraph.png rename to structMYNNPBLH_a50906c85ebea73eda08db05473370ccf_cgraph.png diff --git a/structSolverChoice-members.html b/structSolverChoice-members.html index 648a385879..08d9fa4813 100644 --- a/structSolverChoice-members.html +++ b/structSolverChoice-members.html @@ -140,37 +140,38 @@ rayleigh_ztopSolverChoice rdOcpSolverChoice read_int_string(int max_level, const char *string_to_read, amrex::Vector< int > &vec_to_fill, int default_int)SolverChoiceinline - RhoQr_compSolverChoice - RhoQv_compSolverChoice - sampling_distance_by_DSolverChoice - set_flat_terrain_flag()SolverChoiceinlinestatic - sinphiSolverChoice - spongeChoiceSolverChoice - substepping_typeSolverChoice - terrain_is_flatSolverChoiceinlinestatic - terrain_typeSolverChoiceinlinestatic - test_mapfactorSolverChoice - time_avg_velSolverChoice - turb_disk_angleSolverChoice - turbChoiceSolverChoice - use_coriolisSolverChoice - use_explicit_mostSolverChoice - use_gravitySolverChoice - use_lagged_delta_rtSolverChoice - use_moist_backgroundSolverChoice - use_mono_advSolverChoice - use_NumDiffSolverChoice - use_rotate_mostSolverChoice - windfarm_airfoil_tablesSolverChoice - windfarm_blade_tableSolverChoice - windfarm_loc_tableSolverChoice - windfarm_loc_typeSolverChoice - windfarm_spec_tableSolverChoice - windfarm_spec_table_extraSolverChoice - windfarm_typeSolverChoice - windfarm_x_shiftSolverChoice - windfarm_y_shiftSolverChoice - zsurfSolverChoice + RhoQc_compSolverChoice + RhoQr_compSolverChoice + RhoQv_compSolverChoice + sampling_distance_by_DSolverChoice + set_flat_terrain_flag()SolverChoiceinlinestatic + sinphiSolverChoice + spongeChoiceSolverChoice + substepping_typeSolverChoice + terrain_is_flatSolverChoiceinlinestatic + terrain_typeSolverChoiceinlinestatic + test_mapfactorSolverChoice + time_avg_velSolverChoice + turb_disk_angleSolverChoice + turbChoiceSolverChoice + use_coriolisSolverChoice + use_explicit_mostSolverChoice + use_gravitySolverChoice + use_lagged_delta_rtSolverChoice + use_moist_backgroundSolverChoice + use_mono_advSolverChoice + use_NumDiffSolverChoice + use_rotate_mostSolverChoice + windfarm_airfoil_tablesSolverChoice + windfarm_blade_tableSolverChoice + windfarm_loc_tableSolverChoice + windfarm_loc_typeSolverChoice + windfarm_spec_tableSolverChoice + windfarm_spec_table_extraSolverChoice + windfarm_typeSolverChoice + windfarm_x_shiftSolverChoice + windfarm_y_shiftSolverChoice + zsurfSolverChoice diff --git a/structSolverChoice.html b/structSolverChoice.html index 4a83d509ad..cfa2350629 100644 --- a/structSolverChoice.html +++ b/structSolverChoice.html @@ -272,6 +272,8 @@   int RhoQv_comp {-1}   +int RhoQc_comp {-1} +  int RhoQr_comp {-1}   std::string windfarm_loc_table @@ -327,57 +329,57 @@

                                -
                                466  {
                                -
                                467  amrex::ParmParse pp(pp_prefix);
                                -
                                468 
                                -
                                469  // Read the rotational time period (in seconds)
                                -
                                470  amrex::Real rot_time_period = 86400.0;
                                -
                                471  pp.query("rotational_time_period", rot_time_period);
                                -
                                472 
                                -
                                473  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
                                -
                                474  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
                                -
                                475 
                                -
                                476  amrex::Real latitude = 90.0;
                                -
                                477  pp.query("latitude", latitude);
                                -
                                478 
                                -
                                479  pp.query("coriolis_3d", coriolis_3d);
                                +
                                471  {
                                +
                                472  amrex::ParmParse pp(pp_prefix);
                                +
                                473 
                                +
                                474  // Read the rotational time period (in seconds)
                                +
                                475  amrex::Real rot_time_period = 86400.0;
                                +
                                476  pp.query("rotational_time_period", rot_time_period);
                                +
                                477 
                                +
                                478  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
                                +
                                479  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
                                480 
                                -
                                481  // Convert to radians
                                -
                                482  latitude *= (PI/180.);
                                -
                                483  sinphi = std::sin(latitude);
                                -
                                484  if (coriolis_3d) {
                                -
                                485  cosphi = std::cos(latitude);
                                -
                                486  }
                                -
                                487 
                                -
                                488  amrex::Print() << "Coriolis frequency, f = " << coriolis_factor * sinphi << " 1/s" << std::endl;
                                -
                                489 
                                -
                                490  if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                                -
                                491  // Read in the geostrophic wind -- we only use this to construct
                                -
                                492  // the forcing term so no need to keep it
                                -
                                493  amrex::Vector<amrex::Real> abl_geo_wind(3);
                                -
                                494  pp.queryarr("abl_geo_wind",abl_geo_wind);
                                -
                                495 
                                -
                                496  if(!pp.query("abl_geo_wind_table",abl_geo_wind_table)) {
                                -
                                497  abl_geo_forcing = {
                                -
                                498  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
                                -
                                499  coriolis_factor * abl_geo_wind[0]*sinphi,
                                -
                                500  -coriolis_factor * abl_geo_wind[0]*cosphi
                                -
                                501  };
                                -
                                502  } else {
                                -
                                503  amrex::Print() << "NOTE: abl_geo_wind_table provided, ignoring input abl_geo_wind" << std::endl;
                                -
                                504  }
                                -
                                505  }
                                -
                                506  }
                                +
                                481  amrex::Real latitude = 90.0;
                                +
                                482  pp.query("latitude", latitude);
                                +
                                483 
                                +
                                484  pp.query("coriolis_3d", coriolis_3d);
                                +
                                485 
                                +
                                486  // Convert to radians
                                +
                                487  latitude *= (PI/180.);
                                +
                                488  sinphi = std::sin(latitude);
                                +
                                489  if (coriolis_3d) {
                                +
                                490  cosphi = std::cos(latitude);
                                +
                                491  }
                                +
                                492 
                                +
                                493  amrex::Print() << "Coriolis frequency, f = " << coriolis_factor * sinphi << " 1/s" << std::endl;
                                +
                                494 
                                +
                                495  if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                                +
                                496  // Read in the geostrophic wind -- we only use this to construct
                                +
                                497  // the forcing term so no need to keep it
                                +
                                498  amrex::Vector<amrex::Real> abl_geo_wind(3);
                                +
                                499  pp.queryarr("abl_geo_wind",abl_geo_wind);
                                +
                                500 
                                +
                                501  if(!pp.query("abl_geo_wind_table",abl_geo_wind_table)) {
                                +
                                502  abl_geo_forcing = {
                                +
                                503  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
                                +
                                504  coriolis_factor * abl_geo_wind[0]*sinphi,
                                +
                                505  -coriolis_factor * abl_geo_wind[0]*cosphi
                                +
                                506  };
                                +
                                507  } else {
                                +
                                508  amrex::Print() << "NOTE: abl_geo_wind_table provided, ignoring input abl_geo_wind" << std::endl;
                                +
                                509  }
                                +
                                510  }
                                +
                                511  }
                                PI
                                constexpr amrex::Real PI
                                Definition: ERF_Constants.H:6
                                pp
                                AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
                                Definition: ERF_MicrophysicsUtils.H:219
                                -
                                SolverChoice::coriolis_factor
                                amrex::Real coriolis_factor
                                Definition: ERF_DataStruct.H:588
                                -
                                SolverChoice::cosphi
                                amrex::Real cosphi
                                Definition: ERF_DataStruct.H:589
                                -
                                SolverChoice::pp_prefix
                                std::string pp_prefix
                                Definition: ERF_DataStruct.H:543
                                -
                                SolverChoice::abl_geo_forcing
                                amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
                                Definition: ERF_DataStruct.H:630
                                -
                                SolverChoice::sinphi
                                amrex::Real sinphi
                                Definition: ERF_DataStruct.H:590
                                -
                                SolverChoice::coriolis_3d
                                bool coriolis_3d
                                Definition: ERF_DataStruct.H:562
                                -
                                SolverChoice::abl_geo_wind_table
                                std::string abl_geo_wind_table
                                Definition: ERF_DataStruct.H:631
                                -
                                SolverChoice::abl_driver_type
                                ABLDriverType abl_driver_type
                                Definition: ERF_DataStruct.H:628
                                +
                                SolverChoice::coriolis_factor
                                amrex::Real coriolis_factor
                                Definition: ERF_DataStruct.H:593
                                +
                                SolverChoice::cosphi
                                amrex::Real cosphi
                                Definition: ERF_DataStruct.H:594
                                +
                                SolverChoice::pp_prefix
                                std::string pp_prefix
                                Definition: ERF_DataStruct.H:548
                                +
                                SolverChoice::abl_geo_forcing
                                amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
                                Definition: ERF_DataStruct.H:635
                                +
                                SolverChoice::sinphi
                                amrex::Real sinphi
                                Definition: ERF_DataStruct.H:595
                                +
                                SolverChoice::coriolis_3d
                                bool coriolis_3d
                                Definition: ERF_DataStruct.H:567
                                +
                                SolverChoice::abl_geo_wind_table
                                std::string abl_geo_wind_table
                                Definition: ERF_DataStruct.H:636
                                +
                                SolverChoice::abl_driver_type
                                ABLDriverType abl_driver_type
                                Definition: ERF_DataStruct.H:633

                                Referenced by init_params().

                                @@ -424,58 +426,58 @@

                                -
                                364  {
                                -
                                365  // Warn for PBL models and moisture - these may not yet be compatible
                                -
                                366  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                367  if ((moisture_type != MoistureType::None) && (turbChoice[lev].pbl_type != PBLType::None)) {
                                -
                                368  amrex::Warning("\n*** WARNING: Moisture may not yet be compatible with PBL models, \n proceed with caution ***");
                                -
                                369  }
                                -
                                370  }
                                -
                                371  //
                                -
                                372  // Buoyancy type check
                                -
                                373  //
                                -
                                374  if (buoyancy_type != 1 && buoyancy_type != 2 && buoyancy_type != 3 && buoyancy_type != 4) {
                                -
                                375  amrex::Abort("buoyancy_type must be 1, 2, 3 or 4");
                                -
                                376  }
                                -
                                377 
                                -
                                378  if (!use_lagged_delta_rt && !(terrain_type == TerrainType::Moving)) {
                                -
                                379  amrex::Error("Can't turn off lagged_delta_rt when terrain not moving");
                                -
                                380  }
                                -
                                381 
                                -
                                382  //
                                -
                                383  // Wind farm checks
                                -
                                384  //
                                -
                                385  if (windfarm_type==WindFarmType::SimpleAD and sampling_distance_by_D < 0.0) {
                                -
                                386  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
                                -
                                387  " erf.sampling_distance_by_D in the inputs which specifies the upstream"
                                -
                                388  " distance as a factor of the turbine diameter at which the incoming free stream"
                                -
                                389  " velocity will be computed at.");
                                -
                                390  }
                                -
                                391  if ( (windfarm_type==WindFarmType::SimpleAD ||
                                -
                                392  windfarm_type==WindFarmType::GeneralAD ) && turb_disk_angle < 0.0) {
                                -
                                393  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
                                -
                                394  " erf.turb_disk_angle_from_x in the inputs which is the angle of the face of the"
                                -
                                395  " turbine disk from the x-axis. A turbine facing an oncoming flow in the x-direction"
                                -
                                396  " will have turb_disk_angle value of 90 deg.");
                                -
                                397  }
                                -
                                398  if (windfarm_loc_type == WindFarmLocType::lat_lon and (windfarm_x_shift < 0.0 or windfarm_y_shift < 0.0)) {
                                -
                                399  amrex::Abort("You are using windfarms with latitude-logitude option to position the turbines."
                                -
                                400  " For this you should provide the inputs erf.windfarm_x_shift and"
                                -
                                401  " erf.windfarm_y_shift which are the values by which the bounding box of the"
                                -
                                402  " windfarm is shifted from the x and the y axes.");
                                -
                                403  }
                                -
                                404  }
                                -
                                SolverChoice::use_lagged_delta_rt
                                bool use_lagged_delta_rt
                                Definition: ERF_DataStruct.H:573
                                -
                                SolverChoice::windfarm_x_shift
                                amrex::Real windfarm_x_shift
                                Definition: ERF_DataStruct.H:651
                                -
                                SolverChoice::windfarm_loc_type
                                WindFarmLocType windfarm_loc_type
                                Definition: ERF_DataStruct.H:625
                                -
                                SolverChoice::sampling_distance_by_D
                                amrex::Real sampling_distance_by_D
                                Definition: ERF_DataStruct.H:649
                                -
                                SolverChoice::turbChoice
                                amrex::Vector< TurbChoice > turbChoice
                                Definition: ERF_DataStruct.H:540
                                -
                                SolverChoice::moisture_type
                                MoistureType moisture_type
                                Definition: ERF_DataStruct.H:623
                                -
                                SolverChoice::terrain_type
                                static TerrainType terrain_type
                                Definition: ERF_DataStruct.H:529
                                -
                                SolverChoice::windfarm_type
                                WindFarmType windfarm_type
                                Definition: ERF_DataStruct.H:624
                                -
                                SolverChoice::buoyancy_type
                                int buoyancy_type
                                Definition: ERF_DataStruct.H:557
                                -
                                SolverChoice::turb_disk_angle
                                amrex::Real turb_disk_angle
                                Definition: ERF_DataStruct.H:650
                                -
                                SolverChoice::windfarm_y_shift
                                amrex::Real windfarm_y_shift
                                Definition: ERF_DataStruct.H:652
                                +
                                369  {
                                +
                                370  // Warn for PBL models and moisture - these may not yet be compatible
                                +
                                371  for (int lev = 0; lev <= max_level; lev++) {
                                +
                                372  if ((moisture_type != MoistureType::None) && (turbChoice[lev].pbl_type != PBLType::None)) {
                                +
                                373  amrex::Warning("\n*** WARNING: Moisture may not yet be compatible with PBL models, \n proceed with caution ***");
                                +
                                374  }
                                +
                                375  }
                                +
                                376  //
                                +
                                377  // Buoyancy type check
                                +
                                378  //
                                +
                                379  if (buoyancy_type != 1 && buoyancy_type != 2 && buoyancy_type != 3 && buoyancy_type != 4) {
                                +
                                380  amrex::Abort("buoyancy_type must be 1, 2, 3 or 4");
                                +
                                381  }
                                +
                                382 
                                +
                                383  if (!use_lagged_delta_rt && !(terrain_type == TerrainType::Moving)) {
                                +
                                384  amrex::Error("Can't turn off lagged_delta_rt when terrain not moving");
                                +
                                385  }
                                +
                                386 
                                +
                                387  //
                                +
                                388  // Wind farm checks
                                +
                                389  //
                                +
                                390  if (windfarm_type==WindFarmType::SimpleAD and sampling_distance_by_D < 0.0) {
                                +
                                391  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
                                +
                                392  " erf.sampling_distance_by_D in the inputs which specifies the upstream"
                                +
                                393  " distance as a factor of the turbine diameter at which the incoming free stream"
                                +
                                394  " velocity will be computed at.");
                                +
                                395  }
                                +
                                396  if ( (windfarm_type==WindFarmType::SimpleAD ||
                                +
                                397  windfarm_type==WindFarmType::GeneralAD ) && turb_disk_angle < 0.0) {
                                +
                                398  amrex::Abort("To use simplified actuator disks, you need to provide a variable"
                                +
                                399  " erf.turb_disk_angle_from_x in the inputs which is the angle of the face of the"
                                +
                                400  " turbine disk from the x-axis. A turbine facing an oncoming flow in the x-direction"
                                +
                                401  " will have turb_disk_angle value of 90 deg.");
                                +
                                402  }
                                +
                                403  if (windfarm_loc_type == WindFarmLocType::lat_lon and (windfarm_x_shift < 0.0 or windfarm_y_shift < 0.0)) {
                                +
                                404  amrex::Abort("You are using windfarms with latitude-logitude option to position the turbines."
                                +
                                405  " For this you should provide the inputs erf.windfarm_x_shift and"
                                +
                                406  " erf.windfarm_y_shift which are the values by which the bounding box of the"
                                +
                                407  " windfarm is shifted from the x and the y axes.");
                                +
                                408  }
                                +
                                409  }
                                +
                                SolverChoice::use_lagged_delta_rt
                                bool use_lagged_delta_rt
                                Definition: ERF_DataStruct.H:578
                                +
                                SolverChoice::windfarm_x_shift
                                amrex::Real windfarm_x_shift
                                Definition: ERF_DataStruct.H:657
                                +
                                SolverChoice::windfarm_loc_type
                                WindFarmLocType windfarm_loc_type
                                Definition: ERF_DataStruct.H:630
                                +
                                SolverChoice::sampling_distance_by_D
                                amrex::Real sampling_distance_by_D
                                Definition: ERF_DataStruct.H:655
                                +
                                SolverChoice::turbChoice
                                amrex::Vector< TurbChoice > turbChoice
                                Definition: ERF_DataStruct.H:545
                                +
                                SolverChoice::moisture_type
                                MoistureType moisture_type
                                Definition: ERF_DataStruct.H:628
                                +
                                SolverChoice::terrain_type
                                static TerrainType terrain_type
                                Definition: ERF_DataStruct.H:534
                                +
                                SolverChoice::windfarm_type
                                WindFarmType windfarm_type
                                Definition: ERF_DataStruct.H:629
                                +
                                SolverChoice::buoyancy_type
                                int buoyancy_type
                                Definition: ERF_DataStruct.H:562
                                +
                                SolverChoice::turb_disk_angle
                                amrex::Real turb_disk_angle
                                Definition: ERF_DataStruct.H:656
                                +
                                SolverChoice::windfarm_y_shift
                                amrex::Real windfarm_y_shift
                                Definition: ERF_DataStruct.H:658

                                Referenced by init_params().

                                @@ -513,75 +515,75 @@

                                -
                                407  {
                                -
                                408  amrex::Print() << "SOLVER CHOICE: " << std::endl;
                                -
                                409  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
                                -
                                410  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                411  amrex::Print() << "anelastic at level : " << lev << " is " << anelastic[lev] << std::endl;
                                -
                                412  if (substepping_type[lev] == SubsteppingType::None) {
                                -
                                413  amrex::Print() << "No substepping at level " << lev << std::endl;
                                -
                                414  } else if (substepping_type[lev] == SubsteppingType::Explicit) {
                                -
                                415  amrex::Print() << "Explicit substepping at level " << lev << std::endl;
                                -
                                416  } else if (substepping_type[lev] == SubsteppingType::Implicit) {
                                -
                                417  amrex::Print() << "Implicit substepping at level " << lev << std::endl;
                                -
                                418  }
                                -
                                419  }
                                -
                                420  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
                                -
                                421  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
                                -
                                422 
                                -
                                423  amrex::Print() << "Terrain Type: " << std::endl;
                                -
                                424  if (terrain_type == TerrainType::Static) {
                                -
                                425  amrex::Print() << " Static" << std::endl;
                                -
                                426  } else if (terrain_type == TerrainType::Moving) {
                                -
                                427  amrex::Print() << " Moving" << std::endl;
                                -
                                428  } else {
                                -
                                429  amrex::Print() << " None" << std::endl;
                                -
                                430  }
                                -
                                431 
                                -
                                432  amrex::Print() << "ABL Driver Type: " << std::endl;
                                -
                                433  if (abl_driver_type == ABLDriverType::None) {
                                +
                                412  {
                                +
                                413  amrex::Print() << "SOLVER CHOICE: " << std::endl;
                                +
                                414  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
                                +
                                415  for (int lev = 0; lev <= max_level; lev++) {
                                +
                                416  amrex::Print() << "anelastic at level : " << lev << " is " << anelastic[lev] << std::endl;
                                +
                                417  if (substepping_type[lev] == SubsteppingType::None) {
                                +
                                418  amrex::Print() << "No substepping at level " << lev << std::endl;
                                +
                                419  } else if (substepping_type[lev] == SubsteppingType::Explicit) {
                                +
                                420  amrex::Print() << "Explicit substepping at level " << lev << std::endl;
                                +
                                421  } else if (substepping_type[lev] == SubsteppingType::Implicit) {
                                +
                                422  amrex::Print() << "Implicit substepping at level " << lev << std::endl;
                                +
                                423  }
                                +
                                424  }
                                +
                                425  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
                                +
                                426  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
                                +
                                427 
                                +
                                428  amrex::Print() << "Terrain Type: " << std::endl;
                                +
                                429  if (terrain_type == TerrainType::Static) {
                                +
                                430  amrex::Print() << " Static" << std::endl;
                                +
                                431  } else if (terrain_type == TerrainType::Moving) {
                                +
                                432  amrex::Print() << " Moving" << std::endl;
                                +
                                433  } else {
                                434  amrex::Print() << " None" << std::endl;
                                -
                                435  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
                                -
                                436  amrex::Print() << " Pressure Gradient "
                                -
                                437  << amrex::RealVect(abl_pressure_grad[0],abl_pressure_grad[1],abl_pressure_grad[2])
                                -
                                438  << std::endl;
                                -
                                439  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                                -
                                440  amrex::Print() << " Geostrophic Wind "
                                -
                                441  << amrex::RealVect(abl_geo_forcing[0],abl_geo_forcing[1],abl_geo_forcing[2])
                                -
                                442  << std::endl;
                                -
                                443  }
                                -
                                444 
                                -
                                445  if (max_level > 0) {
                                -
                                446  amrex::Print() << "Coupling Type: " << std::endl;
                                -
                                447  if (coupling_type == CouplingType::TwoWay) {
                                -
                                448  amrex::Print() << " Two-way" << std::endl;
                                -
                                449  } else if (coupling_type == CouplingType::OneWay) {
                                -
                                450  amrex::Print() << " One-way" << std::endl;
                                -
                                451  }
                                -
                                452  }
                                -
                                453 
                                -
                                454  amrex::Print() << "Buoyancy_type : " << buoyancy_type << std::endl;
                                -
                                455 
                                -
                                456  advChoice.display();
                                -
                                457  diffChoice.display();
                                -
                                458  spongeChoice.display();
                                -
                                459 
                                -
                                460  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                461  turbChoice[lev].display(lev);
                                -
                                462  }
                                -
                                463  }
                                +
                                435  }
                                +
                                436 
                                +
                                437  amrex::Print() << "ABL Driver Type: " << std::endl;
                                +
                                438  if (abl_driver_type == ABLDriverType::None) {
                                +
                                439  amrex::Print() << " None" << std::endl;
                                +
                                440  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
                                +
                                441  amrex::Print() << " Pressure Gradient "
                                +
                                442  << amrex::RealVect(abl_pressure_grad[0],abl_pressure_grad[1],abl_pressure_grad[2])
                                +
                                443  << std::endl;
                                +
                                444  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                                +
                                445  amrex::Print() << " Geostrophic Wind "
                                +
                                446  << amrex::RealVect(abl_geo_forcing[0],abl_geo_forcing[1],abl_geo_forcing[2])
                                +
                                447  << std::endl;
                                +
                                448  }
                                +
                                449 
                                +
                                450  if (max_level > 0) {
                                +
                                451  amrex::Print() << "Coupling Type: " << std::endl;
                                +
                                452  if (coupling_type == CouplingType::TwoWay) {
                                +
                                453  amrex::Print() << " Two-way" << std::endl;
                                +
                                454  } else if (coupling_type == CouplingType::OneWay) {
                                +
                                455  amrex::Print() << " One-way" << std::endl;
                                +
                                456  }
                                +
                                457  }
                                +
                                458 
                                +
                                459  amrex::Print() << "Buoyancy_type : " << buoyancy_type << std::endl;
                                +
                                460 
                                +
                                461  advChoice.display();
                                +
                                462  diffChoice.display();
                                +
                                463  spongeChoice.display();
                                +
                                464 
                                +
                                465  for (int lev = 0; lev <= max_level; lev++) {
                                +
                                466  turbChoice[lev].display(lev);
                                +
                                467  }
                                +
                                468  }
                                AdvChoice::display
                                void display()
                                Definition: ERF_AdvStruct.H:189
                                DiffChoice::display
                                void display()
                                Definition: ERF_DiffStruct.H:56
                                -
                                SolverChoice::diffChoice
                                DiffChoice diffChoice
                                Definition: ERF_DataStruct.H:538
                                -
                                SolverChoice::use_gravity
                                bool use_gravity
                                Definition: ERF_DataStruct.H:560
                                -
                                SolverChoice::force_stage1_single_substep
                                int force_stage1_single_substep
                                Definition: ERF_DataStruct.H:545
                                -
                                SolverChoice::abl_pressure_grad
                                amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
                                Definition: ERF_DataStruct.H:629
                                -
                                SolverChoice::substepping_type
                                amrex::Vector< SubsteppingType > substepping_type
                                Definition: ERF_DataStruct.H:547
                                -
                                SolverChoice::use_coriolis
                                bool use_coriolis
                                Definition: ERF_DataStruct.H:561
                                -
                                SolverChoice::anelastic
                                amrex::Vector< int > anelastic
                                Definition: ERF_DataStruct.H:548
                                -
                                SolverChoice::advChoice
                                AdvChoice advChoice
                                Definition: ERF_DataStruct.H:537
                                -
                                SolverChoice::spongeChoice
                                SpongeChoice spongeChoice
                                Definition: ERF_DataStruct.H:539
                                -
                                SolverChoice::coupling_type
                                CouplingType coupling_type
                                Definition: ERF_DataStruct.H:622
                                +
                                SolverChoice::diffChoice
                                DiffChoice diffChoice
                                Definition: ERF_DataStruct.H:543
                                +
                                SolverChoice::use_gravity
                                bool use_gravity
                                Definition: ERF_DataStruct.H:565
                                +
                                SolverChoice::force_stage1_single_substep
                                int force_stage1_single_substep
                                Definition: ERF_DataStruct.H:550
                                +
                                SolverChoice::abl_pressure_grad
                                amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
                                Definition: ERF_DataStruct.H:634
                                +
                                SolverChoice::substepping_type
                                amrex::Vector< SubsteppingType > substepping_type
                                Definition: ERF_DataStruct.H:552
                                +
                                SolverChoice::use_coriolis
                                bool use_coriolis
                                Definition: ERF_DataStruct.H:566
                                +
                                SolverChoice::anelastic
                                amrex::Vector< int > anelastic
                                Definition: ERF_DataStruct.H:553
                                +
                                SolverChoice::advChoice
                                AdvChoice advChoice
                                Definition: ERF_DataStruct.H:542
                                +
                                SolverChoice::spongeChoice
                                SpongeChoice spongeChoice
                                Definition: ERF_DataStruct.H:544
                                +
                                SolverChoice::coupling_type
                                CouplingType coupling_type
                                Definition: ERF_DataStruct.H:627
                                SpongeChoice::display
                                void display()
                                Definition: ERF_SpongeStruct.H:45
                                Here is the call graph for this function:
                                @@ -650,312 +652,319 @@

                                107  pp.query_enum_case_insensitive("moisture_model",moisture_type);

                                108  if (moisture_type == MoistureType::SAM) {
                                109  RhoQv_comp = RhoQ1_comp;
                                -
                                110  RhoQr_comp = RhoQ4_comp;
                                -
                                111  } else if (moisture_type == MoistureType::SAM_NoIce) {
                                -
                                112  RhoQv_comp = RhoQ1_comp;
                                -
                                113  RhoQr_comp = RhoQ4_comp;
                                -
                                114  } else if (moisture_type == MoistureType::SAM_NoPrecip_NoIce) {
                                -
                                115  RhoQv_comp = RhoQ1_comp;
                                -
                                116  } else if (moisture_type == MoistureType::Kessler) {
                                +
                                110  RhoQc_comp = RhoQ2_comp;
                                +
                                111  RhoQr_comp = RhoQ4_comp;
                                +
                                112  } else if (moisture_type == MoistureType::SAM_NoIce) {
                                +
                                113  RhoQv_comp = RhoQ1_comp;
                                +
                                114  RhoQc_comp = RhoQ2_comp;
                                +
                                115  RhoQr_comp = RhoQ4_comp;
                                +
                                116  } else if (moisture_type == MoistureType::SAM_NoPrecip_NoIce) {
                                117  RhoQv_comp = RhoQ1_comp;
                                -
                                118  RhoQr_comp = RhoQ3_comp;
                                -
                                119  } else if (moisture_type == MoistureType::Kessler_NoRain) {
                                +
                                118  RhoQc_comp = RhoQ2_comp;
                                +
                                119  } else if (moisture_type == MoistureType::Kessler) {
                                120  RhoQv_comp = RhoQ1_comp;
                                -
                                121  }
                                -
                                122 
                                -
                                123  // TODO: should we set default for dry??
                                -
                                124  // Set a different default for moist vs dry
                                -
                                125  if (moisture_type != MoistureType::None) {
                                -
                                126  if (moisture_type == MoistureType::Kessler_NoRain ||
                                -
                                127  moisture_type == MoistureType::SAM ||
                                -
                                128  moisture_type == MoistureType::SAM_NoIce ||
                                -
                                129  moisture_type == MoistureType::SAM_NoPrecip_NoIce)
                                -
                                130  {
                                -
                                131  buoyancy_type = 1; // uses Rhoprime
                                -
                                132  } else {
                                -
                                133  buoyancy_type = 2; // uses Tprime
                                -
                                134  }
                                -
                                135  }
                                -
                                136 
                                -
                                137  // Which expression (1,2/3 or 4) to use for buoyancy
                                -
                                138  pp.query("buoyancy_type", buoyancy_type);
                                -
                                139 
                                -
                                140  // What type of land surface model to use
                                -
                                141  lsm_type = LandSurfaceType::None; // Default
                                -
                                142  pp.query_enum_case_insensitive("land_surface_model",lsm_type);
                                -
                                143 
                                -
                                144  // Is the terrain none, static or moving?
                                -
                                145  pp.query_enum_case_insensitive("terrain_type",terrain_type);
                                -
                                146  int n_zlevels = pp.countval("terrain_z_levels");
                                -
                                147  if (n_zlevels > 0 and terrain_type == TerrainType::None)
                                -
                                148  {
                                -
                                149  terrain_type = TerrainType::Static;
                                -
                                150  }
                                -
                                151 
                                -
                                152  // Use lagged_delta_rt in the fast integrator?
                                -
                                153  pp.query("use_lagged_delta_rt", use_lagged_delta_rt);
                                -
                                154 
                                -
                                155  // These default to true but are used for unit testing
                                -
                                156  pp.query("use_gravity", use_gravity);
                                -
                                157  gravity = use_gravity? CONST_GRAV: 0.0;
                                -
                                158 
                                -
                                159  pp.query("c_p", c_p);
                                -
                                160  rdOcp = R_d / c_p;
                                -
                                161 
                                -
                                162  read_int_string(max_level, "anelastic", anelastic, 0);
                                +
                                121  RhoQc_comp = RhoQ2_comp;
                                +
                                122  RhoQr_comp = RhoQ3_comp;
                                +
                                123  } else if (moisture_type == MoistureType::Kessler_NoRain) {
                                +
                                124  RhoQv_comp = RhoQ1_comp;
                                +
                                125  RhoQc_comp = RhoQ2_comp;
                                +
                                126  }
                                +
                                127 
                                +
                                128  // TODO: should we set default for dry??
                                +
                                129  // Set a different default for moist vs dry
                                +
                                130  if (moisture_type != MoistureType::None) {
                                +
                                131  if (moisture_type == MoistureType::Kessler_NoRain ||
                                +
                                132  moisture_type == MoistureType::SAM ||
                                +
                                133  moisture_type == MoistureType::SAM_NoIce ||
                                +
                                134  moisture_type == MoistureType::SAM_NoPrecip_NoIce)
                                +
                                135  {
                                +
                                136  buoyancy_type = 1; // uses Rhoprime
                                +
                                137  } else {
                                +
                                138  buoyancy_type = 2; // uses Tprime
                                +
                                139  }
                                +
                                140  }
                                +
                                141 
                                +
                                142  // Which expression (1,2/3 or 4) to use for buoyancy
                                +
                                143  pp.query("buoyancy_type", buoyancy_type);
                                +
                                144 
                                +
                                145  // What type of land surface model to use
                                +
                                146  lsm_type = LandSurfaceType::None; // Default
                                +
                                147  pp.query_enum_case_insensitive("land_surface_model",lsm_type);
                                +
                                148 
                                +
                                149  // Is the terrain none, static or moving?
                                +
                                150  pp.query_enum_case_insensitive("terrain_type",terrain_type);
                                +
                                151  int n_zlevels = pp.countval("terrain_z_levels");
                                +
                                152  if (n_zlevels > 0 and terrain_type == TerrainType::None)
                                +
                                153  {
                                +
                                154  terrain_type = TerrainType::Static;
                                +
                                155  }
                                +
                                156 
                                +
                                157  // Use lagged_delta_rt in the fast integrator?
                                +
                                158  pp.query("use_lagged_delta_rt", use_lagged_delta_rt);
                                +
                                159 
                                +
                                160  // These default to true but are used for unit testing
                                +
                                161  pp.query("use_gravity", use_gravity);
                                +
                                162  gravity = use_gravity? CONST_GRAV: 0.0;
                                163 
                                -
                                164  // *******************************************************************************
                                -
                                165  // Read substepping_type and allow for different values at each level
                                -
                                166  // *******************************************************************************
                                -
                                167  substepping_type.resize(max_level+1);
                                +
                                164  pp.query("c_p", c_p);
                                +
                                165  rdOcp = R_d / c_p;
                                +
                                166 
                                +
                                167  read_int_string(max_level, "anelastic", anelastic, 0);
                                168 
                                -
                                169  for (int i = 0; i <= max_level; i++) {
                                -
                                170  substepping_type[i] = SubsteppingType::Implicit;
                                -
                                171  }
                                -
                                172 
                                -
                                173  int nvals = pp.countval("substepping_type");
                                -
                                174  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
                                -
                                175 
                                -
                                176  if (nvals == 1) {
                                -
                                177  pp.query_enum_case_insensitive("substepping_type",substepping_type[0]);
                                -
                                178  for (int i = 1; i <= max_level; i++) {
                                -
                                179  substepping_type[i] = substepping_type[0];
                                -
                                180  }
                                -
                                181  } else if (nvals > 1) { // in this case we have asserted nvals >= max_level+1
                                -
                                182  for (int i = 0; i <= max_level; i++) {
                                -
                                183  pp.query_enum_case_insensitive("substepping_type",substepping_type[i],i);
                                -
                                184  }
                                -
                                185  }
                                -
                                186 
                                -
                                187  // *******************************************************************************
                                -
                                188  // Error check on deprecated input
                                -
                                189  // *******************************************************************************
                                -
                                190  int nvals_old = pp.countval("no_substepping");
                                -
                                191  if (nvals_old > 0) {
                                -
                                192  amrex::Abort("The no_substepping flag is deprecated -- set substepping_type instead");
                                -
                                193  }
                                +
                                169  // *******************************************************************************
                                +
                                170  // Read substepping_type and allow for different values at each level
                                +
                                171  // *******************************************************************************
                                +
                                172  substepping_type.resize(max_level+1);
                                +
                                173 
                                +
                                174  for (int i = 0; i <= max_level; i++) {
                                +
                                175  substepping_type[i] = SubsteppingType::Implicit;
                                +
                                176  }
                                +
                                177 
                                +
                                178  int nvals = pp.countval("substepping_type");
                                +
                                179  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
                                +
                                180 
                                +
                                181  if (nvals == 1) {
                                +
                                182  pp.query_enum_case_insensitive("substepping_type",substepping_type[0]);
                                +
                                183  for (int i = 1; i <= max_level; i++) {
                                +
                                184  substepping_type[i] = substepping_type[0];
                                +
                                185  }
                                +
                                186  } else if (nvals > 1) { // in this case we have asserted nvals >= max_level+1
                                +
                                187  for (int i = 0; i <= max_level; i++) {
                                +
                                188  pp.query_enum_case_insensitive("substepping_type",substepping_type[i],i);
                                +
                                189  }
                                +
                                190  }
                                +
                                191 
                                +
                                192  // *******************************************************************************
                                +
                                193  // Error check on deprecated input
                                194  // *******************************************************************************
                                -
                                195 
                                -
                                196  bool any_anelastic = false;
                                -
                                197  for (int i = 0; i <= max_level; ++i) {
                                -
                                198  if (anelastic[i] == 1) any_anelastic = true;
                                -
                                199  }
                                +
                                195  int nvals_old = pp.countval("no_substepping");
                                +
                                196  if (nvals_old > 0) {
                                +
                                197  amrex::Abort("The no_substepping flag is deprecated -- set substepping_type instead");
                                +
                                198  }
                                +
                                199  // *******************************************************************************
                                200 
                                -
                                201  // If anelastic at all, we do not advect rho -- it is always == rho0
                                -
                                202  if (any_anelastic == 1) {
                                -
                                203  constant_density = true;
                                -
                                204  project_initial_velocity = true;
                                -
                                205  buoyancy_type = 3; // (This isn't actually used when anelastic is set)
                                -
                                206  } else {
                                -
                                207  pp.query("project_initial_velocity", project_initial_velocity);
                                -
                                208 
                                -
                                209  constant_density = false; // We default to false but allow the user to set it
                                -
                                210  pp.query("constant_density", constant_density);
                                -
                                211  }
                                -
                                212 
                                -
                                213  // *******************************************************************************
                                -
                                214 
                                -
                                215  pp.query("ncorr", ncorr);
                                -
                                216  pp.query("poisson_abstol", poisson_abstol);
                                -
                                217  pp.query("poisson_reltol", poisson_reltol);
                                -
                                218 
                                -
                                219  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                220  if (anelastic[lev] != 0)
                                -
                                221  {
                                -
                                222  substepping_type[lev] = SubsteppingType::None;
                                -
                                223  }
                                -
                                224  }
                                -
                                225 
                                -
                                226  pp.query("force_stage1_single_substep", force_stage1_single_substep);
                                -
                                227 
                                -
                                228  // Include Coriolis forcing?
                                -
                                229  pp.query("use_coriolis", use_coriolis);
                                +
                                201  bool any_anelastic = false;
                                +
                                202  for (int i = 0; i <= max_level; ++i) {
                                +
                                203  if (anelastic[i] == 1) any_anelastic = true;
                                +
                                204  }
                                +
                                205 
                                +
                                206  // If anelastic at all, we do not advect rho -- it is always == rho0
                                +
                                207  if (any_anelastic == 1) {
                                +
                                208  constant_density = true;
                                +
                                209  project_initial_velocity = true;
                                +
                                210  buoyancy_type = 3; // (This isn't actually used when anelastic is set)
                                +
                                211  } else {
                                +
                                212  pp.query("project_initial_velocity", project_initial_velocity);
                                +
                                213 
                                +
                                214  constant_density = false; // We default to false but allow the user to set it
                                +
                                215  pp.query("constant_density", constant_density);
                                +
                                216  }
                                +
                                217 
                                +
                                218  // *******************************************************************************
                                +
                                219 
                                +
                                220  pp.query("ncorr", ncorr);
                                +
                                221  pp.query("poisson_abstol", poisson_abstol);
                                +
                                222  pp.query("poisson_reltol", poisson_reltol);
                                +
                                223 
                                +
                                224  for (int lev = 0; lev <= max_level; lev++) {
                                +
                                225  if (anelastic[lev] != 0)
                                +
                                226  {
                                +
                                227  substepping_type[lev] = SubsteppingType::None;
                                +
                                228  }
                                +
                                229  }
                                230 
                                -
                                231  // Include Rayleigh damping (separate flags for each variable)
                                -
                                232  pp.query("rayleigh_damp_U", rayleigh_damp_U);
                                -
                                233  pp.query("rayleigh_damp_V", rayleigh_damp_V);
                                -
                                234  pp.query("rayleigh_damp_W", rayleigh_damp_W);
                                -
                                235  pp.query("rayleigh_damp_T", rayleigh_damp_T);
                                -
                                236  pp.query("rayleigh_dampcoef", rayleigh_dampcoef);
                                -
                                237  pp.query("rayleigh_zdamp", rayleigh_zdamp);
                                -
                                238 
                                -
                                239  // Flag to do explicit MOST formulation
                                -
                                240  pp.query("use_explicit_most",use_explicit_most);
                                -
                                241 
                                -
                                242  // Flag to do MOST rotations with terrain
                                -
                                243  pp.query("use_rotate_most",use_rotate_most);
                                -
                                244  if (use_rotate_most) {
                                -
                                245  AMREX_ASSERT_WITH_MESSAGE(terrain_type != TerrainType::None,"MOST stress rotations are only valid with terrain!");
                                -
                                246  AMREX_ASSERT_WITH_MESSAGE(use_explicit_most, "MOST Stress rotations are only valid with explicit MOST!");
                                -
                                247  }
                                -
                                248 
                                -
                                249  // Which external forcings?
                                -
                                250  abl_driver_type = ABLDriverType::None; // Default: no ABL driver for simulating classical fluid dynamics problems
                                -
                                251  pp.query_enum_case_insensitive("abl_driver_type",abl_driver_type);
                                -
                                252 
                                -
                                253  // Which type of inflow turbulent generation
                                -
                                254  pert_type = PerturbationType::None; // Default
                                -
                                255  pp.query_enum_case_insensitive("perturbation_type",pert_type);
                                -
                                256 
                                -
                                257  amrex::Vector<amrex::Real> abl_pressure_grad_in = {0.0, 0.0, 0.0};
                                -
                                258  pp.queryarr("abl_pressure_grad",abl_pressure_grad_in);
                                -
                                259  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];
                                -
                                260 
                                -
                                261  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
                                -
                                262  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
                                -
                                263  amrex::Print() << "Specified abl_geo_forcing: (";
                                -
                                264  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
                                -
                                265  abl_geo_forcing[i] = abl_geo_forcing_in[i];
                                -
                                266  amrex::Print() << abl_geo_forcing[i] << " ";
                                -
                                267  }
                                -
                                268  amrex::Print() << ")" << std::endl;
                                -
                                269  }
                                -
                                270 
                                -
                                271  if (use_coriolis)
                                -
                                272  {
                                -
                                273  build_coriolis_forcings();
                                +
                                231  pp.query("force_stage1_single_substep", force_stage1_single_substep);
                                +
                                232 
                                +
                                233  // Include Coriolis forcing?
                                +
                                234  pp.query("use_coriolis", use_coriolis);
                                +
                                235 
                                +
                                236  // Include Rayleigh damping (separate flags for each variable)
                                +
                                237  pp.query("rayleigh_damp_U", rayleigh_damp_U);
                                +
                                238  pp.query("rayleigh_damp_V", rayleigh_damp_V);
                                +
                                239  pp.query("rayleigh_damp_W", rayleigh_damp_W);
                                +
                                240  pp.query("rayleigh_damp_T", rayleigh_damp_T);
                                +
                                241  pp.query("rayleigh_dampcoef", rayleigh_dampcoef);
                                +
                                242  pp.query("rayleigh_zdamp", rayleigh_zdamp);
                                +
                                243 
                                +
                                244  // Flag to do explicit MOST formulation
                                +
                                245  pp.query("use_explicit_most",use_explicit_most);
                                +
                                246 
                                +
                                247  // Flag to do MOST rotations with terrain
                                +
                                248  pp.query("use_rotate_most",use_rotate_most);
                                +
                                249  if (use_rotate_most) {
                                +
                                250  AMREX_ASSERT_WITH_MESSAGE(terrain_type != TerrainType::None,"MOST stress rotations are only valid with terrain!");
                                +
                                251  AMREX_ASSERT_WITH_MESSAGE(use_explicit_most, "MOST Stress rotations are only valid with explicit MOST!");
                                +
                                252  }
                                +
                                253 
                                +
                                254  // Which external forcings?
                                +
                                255  abl_driver_type = ABLDriverType::None; // Default: no ABL driver for simulating classical fluid dynamics problems
                                +
                                256  pp.query_enum_case_insensitive("abl_driver_type",abl_driver_type);
                                +
                                257 
                                +
                                258  // Which type of inflow turbulent generation
                                +
                                259  pert_type = PerturbationType::None; // Default
                                +
                                260  pp.query_enum_case_insensitive("perturbation_type",pert_type);
                                +
                                261 
                                +
                                262  amrex::Vector<amrex::Real> abl_pressure_grad_in = {0.0, 0.0, 0.0};
                                +
                                263  pp.queryarr("abl_pressure_grad",abl_pressure_grad_in);
                                +
                                264  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];
                                +
                                265 
                                +
                                266  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
                                +
                                267  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
                                +
                                268  amrex::Print() << "Specified abl_geo_forcing: (";
                                +
                                269  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
                                +
                                270  abl_geo_forcing[i] = abl_geo_forcing_in[i];
                                +
                                271  amrex::Print() << abl_geo_forcing[i] << " ";
                                +
                                272  }
                                +
                                273  amrex::Print() << ")" << std::endl;
                                274  }
                                275 
                                -
                                276  pp.query("add_custom_rhotheta_forcing", custom_rhotheta_forcing);
                                -
                                277  pp.query("add_custom_moisture_forcing", custom_moisture_forcing);
                                -
                                278  pp.query("add_custom_w_subsidence", custom_w_subsidence);
                                -
                                279  pp.query("add_custom_geostrophic_profile", custom_geostrophic_profile);
                                -
                                280  pp.query("custom_forcing_uses_primitive_vars", custom_forcing_prim_vars);
                                -
                                281 
                                -
                                282  pp.query("nudging_from_input_sounding", nudging_from_input_sounding);
                                -
                                283 
                                -
                                284  have_geo_wind_profile = (!abl_geo_wind_table.empty() || custom_geostrophic_profile);
                                -
                                285  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(!(!abl_geo_wind_table.empty() && custom_geostrophic_profile),
                                -
                                286  "Should not have both abl_geo_wind_table and custom_geostrophic_profile set.");
                                -
                                287 
                                -
                                288  pp.query("Ave_Plane", ave_plane);
                                -
                                289 
                                -
                                290  pp.query("mp_clouds", do_cloud);
                                -
                                291  pp.query("mp_precip", do_precip);
                                -
                                292  pp.query("use_moist_background", use_moist_background);
                                -
                                293 
                                -
                                294  // Use numerical diffusion?
                                -
                                295  pp.query("use_NumDiff",use_NumDiff);
                                -
                                296  if(use_NumDiff) {
                                -
                                297  pp.query("NumDiffCoeff",NumDiffCoeff);
                                -
                                298  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
                                -
                                299  "Numerical diffusion coefficient must be between 0 & 1.");
                                -
                                300  NumDiffCoeff *= std::pow(2.0,-6);
                                -
                                301  }
                                -
                                302 
                                -
                                303  // Use monotonic advection?
                                -
                                304  pp.query("use_mono_adv",use_mono_adv);
                                -
                                305 
                                -
                                306  advChoice.init_params();
                                -
                                307  diffChoice.init_params();
                                -
                                308  spongeChoice.init_params();
                                -
                                309 
                                -
                                310  turbChoice.resize(max_level+1);
                                -
                                311  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                312  turbChoice[lev].init_params(lev,max_level);
                                -
                                313  }
                                +
                                276  if (use_coriolis)
                                +
                                277  {
                                +
                                278  build_coriolis_forcings();
                                +
                                279  }
                                +
                                280 
                                +
                                281  pp.query("add_custom_rhotheta_forcing", custom_rhotheta_forcing);
                                +
                                282  pp.query("add_custom_moisture_forcing", custom_moisture_forcing);
                                +
                                283  pp.query("add_custom_w_subsidence", custom_w_subsidence);
                                +
                                284  pp.query("add_custom_geostrophic_profile", custom_geostrophic_profile);
                                +
                                285  pp.query("custom_forcing_uses_primitive_vars", custom_forcing_prim_vars);
                                +
                                286 
                                +
                                287  pp.query("nudging_from_input_sounding", nudging_from_input_sounding);
                                +
                                288 
                                +
                                289  have_geo_wind_profile = (!abl_geo_wind_table.empty() || custom_geostrophic_profile);
                                +
                                290  AMREX_ALWAYS_ASSERT_WITH_MESSAGE(!(!abl_geo_wind_table.empty() && custom_geostrophic_profile),
                                +
                                291  "Should not have both abl_geo_wind_table and custom_geostrophic_profile set.");
                                +
                                292 
                                +
                                293  pp.query("Ave_Plane", ave_plane);
                                +
                                294 
                                +
                                295  pp.query("mp_clouds", do_cloud);
                                +
                                296  pp.query("mp_precip", do_precip);
                                +
                                297  pp.query("use_moist_background", use_moist_background);
                                +
                                298 
                                +
                                299  // Use numerical diffusion?
                                +
                                300  pp.query("use_NumDiff",use_NumDiff);
                                +
                                301  if(use_NumDiff) {
                                +
                                302  pp.query("NumDiffCoeff",NumDiffCoeff);
                                +
                                303  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
                                +
                                304  "Numerical diffusion coefficient must be between 0 & 1.");
                                +
                                305  NumDiffCoeff *= std::pow(2.0,-6);
                                +
                                306  }
                                +
                                307 
                                +
                                308  // Use monotonic advection?
                                +
                                309  pp.query("use_mono_adv",use_mono_adv);
                                +
                                310 
                                +
                                311  advChoice.init_params();
                                +
                                312  diffChoice.init_params();
                                +
                                313  spongeChoice.init_params();
                                314 
                                -
                                315  // YSU PBL: use consistent coriolis frequency
                                +
                                315  turbChoice.resize(max_level+1);
                                316  for (int lev = 0; lev <= max_level; lev++) {
                                -
                                317  if (turbChoice[lev].pbl_ysu_use_consistent_coriolis) {
                                -
                                318  if (use_coriolis) {
                                -
                                319  turbChoice[lev].pbl_ysu_coriolis_freq = coriolis_factor * sinphi;
                                -
                                320  if (lev == 0) {
                                -
                                321  amrex::Print() << "YSU PBL using ERF coriolis frequency: " << turbChoice[lev].pbl_ysu_coriolis_freq << std::endl;
                                -
                                322  }
                                -
                                323  } else {
                                -
                                324  amrex::Abort("YSU cannot use ERF coriolis frequency if not using coriolis");
                                -
                                325  }
                                -
                                326  }
                                -
                                327  }
                                -
                                328 
                                -
                                329 
                                -
                                330  // Which type of multilevel coupling
                                -
                                331  coupling_type = CouplingType::TwoWay; // Default
                                -
                                332  pp.query_enum_case_insensitive("coupling_type",coupling_type);
                                +
                                317  turbChoice[lev].init_params(lev,max_level);
                                +
                                318  }
                                +
                                319 
                                +
                                320  // YSU PBL: use consistent coriolis frequency
                                +
                                321  for (int lev = 0; lev <= max_level; lev++) {
                                +
                                322  if (turbChoice[lev].pbl_ysu_use_consistent_coriolis) {
                                +
                                323  if (use_coriolis) {
                                +
                                324  turbChoice[lev].pbl_ysu_coriolis_freq = coriolis_factor * sinphi;
                                +
                                325  if (lev == 0) {
                                +
                                326  amrex::Print() << "YSU PBL using ERF coriolis frequency: " << turbChoice[lev].pbl_ysu_coriolis_freq << std::endl;
                                +
                                327  }
                                +
                                328  } else {
                                +
                                329  amrex::Abort("YSU cannot use ERF coriolis frequency if not using coriolis");
                                +
                                330  }
                                +
                                331  }
                                +
                                332  }
                                333 
                                -
                                334  // Which type of windfarm model
                                -
                                335  windfarm_type = WindFarmType::None; // Default
                                -
                                336  pp.query_enum_case_insensitive("windfarm_type",windfarm_type);
                                -
                                337 
                                -
                                338  static std::string windfarm_loc_type_string = "None";
                                -
                                339  windfarm_loc_type = WindFarmLocType::None;
                                -
                                340  pp.query_enum_case_insensitive("windfarm_loc_type",windfarm_loc_type);
                                -
                                341 
                                -
                                342  pp.query("windfarm_loc_table", windfarm_loc_table);
                                -
                                343  pp.query("windfarm_spec_table", windfarm_spec_table);
                                -
                                344  pp.query("windfarm_blade_table", windfarm_blade_table);
                                -
                                345  pp.query("windfarm_airfoil_tables", windfarm_airfoil_tables);
                                -
                                346  pp.query("windfarm_spec_table_extra", windfarm_spec_table_extra);
                                -
                                347 
                                -
                                348  // Sampling distance upstream of the turbine to find the
                                -
                                349  // incoming free stream velocity as a factor of the diameter of the
                                -
                                350  // turbine. ie. the sampling distance will be this number multiplied
                                -
                                351  // by the diameter of the turbine
                                -
                                352  pp.query("sampling_distance_by_D", sampling_distance_by_D);
                                -
                                353  pp.query("turb_disk_angle_from_x", turb_disk_angle);
                                -
                                354 
                                -
                                355  pp.query("windfarm_x_shift",windfarm_x_shift);
                                -
                                356  pp.query("windfarm_y_shift",windfarm_y_shift);
                                -
                                357  // Test if time averaged data is to be output
                                -
                                358  pp.query("time_avg_vel",time_avg_vel);
                                +
                                334 
                                +
                                335  // Which type of multilevel coupling
                                +
                                336  coupling_type = CouplingType::TwoWay; // Default
                                +
                                337  pp.query_enum_case_insensitive("coupling_type",coupling_type);
                                +
                                338 
                                +
                                339  // Which type of windfarm model
                                +
                                340  windfarm_type = WindFarmType::None; // Default
                                +
                                341  pp.query_enum_case_insensitive("windfarm_type",windfarm_type);
                                +
                                342 
                                +
                                343  static std::string windfarm_loc_type_string = "None";
                                +
                                344  windfarm_loc_type = WindFarmLocType::None;
                                +
                                345  pp.query_enum_case_insensitive("windfarm_loc_type",windfarm_loc_type);
                                +
                                346 
                                +
                                347  pp.query("windfarm_loc_table", windfarm_loc_table);
                                +
                                348  pp.query("windfarm_spec_table", windfarm_spec_table);
                                +
                                349  pp.query("windfarm_blade_table", windfarm_blade_table);
                                +
                                350  pp.query("windfarm_airfoil_tables", windfarm_airfoil_tables);
                                +
                                351  pp.query("windfarm_spec_table_extra", windfarm_spec_table_extra);
                                +
                                352 
                                +
                                353  // Sampling distance upstream of the turbine to find the
                                +
                                354  // incoming free stream velocity as a factor of the diameter of the
                                +
                                355  // turbine. ie. the sampling distance will be this number multiplied
                                +
                                356  // by the diameter of the turbine
                                +
                                357  pp.query("sampling_distance_by_D", sampling_distance_by_D);
                                +
                                358  pp.query("turb_disk_angle_from_x", turb_disk_angle);
                                359 
                                -
                                360  check_params(max_level);
                                -
                                361  }
                                +
                                360  pp.query("windfarm_x_shift",windfarm_x_shift);
                                +
                                361  pp.query("windfarm_y_shift",windfarm_y_shift);
                                +
                                362  // Test if time averaged data is to be output
                                +
                                363  pp.query("time_avg_vel",time_avg_vel);
                                +
                                364 
                                +
                                365  check_params(max_level);
                                +
                                366  }
                                CONST_GRAV
                                constexpr amrex::Real CONST_GRAV
                                Definition: ERF_Constants.H:21
                                R_d
                                constexpr amrex::Real R_d
                                Definition: ERF_Constants.H:10
                                RhoQ4_comp
                                #define RhoQ4_comp
                                Definition: ERF_IndexDefines.H:45
                                +
                                RhoQ2_comp
                                #define RhoQ2_comp
                                Definition: ERF_IndexDefines.H:43
                                RhoQ3_comp
                                #define RhoQ3_comp
                                Definition: ERF_IndexDefines.H:44
                                RhoQ1_comp
                                #define RhoQ1_comp
                                Definition: ERF_IndexDefines.H:42
                                AdvChoice::init_params
                                void init_params()
                                Definition: ERF_AdvStruct.H:21
                                DiffChoice::init_params
                                void init_params()
                                Definition: ERF_DiffStruct.H:21
                                -
                                SolverChoice::rayleigh_damp_T
                                bool rayleigh_damp_T
                                Definition: ERF_DataStruct.H:567
                                -
                                SolverChoice::dz0
                                amrex::Real dz0
                                Definition: ERF_DataStruct.H:583
                                -
                                SolverChoice::use_explicit_most
                                bool use_explicit_most
                                Definition: ERF_DataStruct.H:604
                                -
                                SolverChoice::rayleigh_damp_V
                                bool rayleigh_damp_V
                                Definition: ERF_DataStruct.H:565
                                -
                                SolverChoice::RhoQr_comp
                                int RhoQr_comp
                                Definition: ERF_DataStruct.H:645
                                -
                                SolverChoice::poisson_reltol
                                amrex::Real poisson_reltol
                                Definition: ERF_DataStruct.H:553
                                -
                                SolverChoice::rayleigh_zdamp
                                amrex::Real rayleigh_zdamp
                                Definition: ERF_DataStruct.H:569
                                -
                                SolverChoice::rdOcp
                                amrex::Real rdOcp
                                Definition: ERF_DataStruct.H:578
                                -
                                SolverChoice::read_int_string
                                void read_int_string(int max_level, const char *string_to_read, amrex::Vector< int > &vec_to_fill, int default_int)
                                Definition: ERF_DataStruct.H:508
                                -
                                SolverChoice::windfarm_spec_table
                                std::string windfarm_spec_table
                                Definition: ERF_DataStruct.H:647
                                -
                                SolverChoice::use_mono_adv
                                bool use_mono_adv
                                Definition: ERF_DataStruct.H:620
                                -
                                SolverChoice::build_coriolis_forcings
                                void build_coriolis_forcings()
                                Definition: ERF_DataStruct.H:465
                                -
                                SolverChoice::ncorr
                                int ncorr
                                Definition: ERF_DataStruct.H:551
                                -
                                SolverChoice::windfarm_spec_table_extra
                                std::string windfarm_spec_table_extra
                                Definition: ERF_DataStruct.H:647
                                -
                                SolverChoice::lsm_type
                                LandSurfaceType lsm_type
                                Definition: ERF_DataStruct.H:626
                                -
                                SolverChoice::c_p
                                amrex::Real c_p
                                Definition: ERF_DataStruct.H:577
                                -
                                SolverChoice::windfarm_loc_table
                                std::string windfarm_loc_table
                                Definition: ERF_DataStruct.H:647
                                -
                                SolverChoice::gravity
                                amrex::Real gravity
                                Definition: ERF_DataStruct.H:576
                                -
                                SolverChoice::check_params
                                void check_params(int max_level)
                                Definition: ERF_DataStruct.H:363
                                -
                                SolverChoice::custom_rhotheta_forcing
                                bool custom_rhotheta_forcing
                                Definition: ERF_DataStruct.H:593
                                -
                                SolverChoice::custom_w_subsidence
                                bool custom_w_subsidence
                                Definition: ERF_DataStruct.H:595
                                -
                                SolverChoice::nudging_from_input_sounding
                                bool nudging_from_input_sounding
                                Definition: ERF_DataStruct.H:601
                                -
                                SolverChoice::rayleigh_damp_U
                                bool rayleigh_damp_U
                                Definition: ERF_DataStruct.H:564
                                -
                                SolverChoice::custom_geostrophic_profile
                                bool custom_geostrophic_profile
                                Definition: ERF_DataStruct.H:596
                                -
                                SolverChoice::grid_stretching_ratio
                                amrex::Real grid_stretching_ratio
                                Definition: ERF_DataStruct.H:581
                                -
                                SolverChoice::have_geo_wind_profile
                                bool have_geo_wind_profile
                                Definition: ERF_DataStruct.H:632
                                -
                                SolverChoice::NumDiffCoeff
                                amrex::Real NumDiffCoeff
                                Definition: ERF_DataStruct.H:617
                                -
                                SolverChoice::do_precip
                                bool do_precip
                                Definition: ERF_DataStruct.H:637
                                -
                                SolverChoice::RhoQv_comp
                                int RhoQv_comp
                                Definition: ERF_DataStruct.H:639
                                -
                                SolverChoice::test_mapfactor
                                bool test_mapfactor
                                Definition: ERF_DataStruct.H:555
                                -
                                SolverChoice::use_NumDiff
                                bool use_NumDiff
                                Definition: ERF_DataStruct.H:616
                                -
                                SolverChoice::custom_moisture_forcing
                                bool custom_moisture_forcing
                                Definition: ERF_DataStruct.H:594
                                -
                                SolverChoice::windfarm_blade_table
                                std::string windfarm_blade_table
                                Definition: ERF_DataStruct.H:648
                                -
                                SolverChoice::zsurf
                                amrex::Real zsurf
                                Definition: ERF_DataStruct.H:582
                                -
                                SolverChoice::project_initial_velocity
                                bool project_initial_velocity
                                Definition: ERF_DataStruct.H:585
                                -
                                SolverChoice::constant_density
                                int constant_density
                                Definition: ERF_DataStruct.H:550
                                -
                                SolverChoice::use_moist_background
                                bool use_moist_background
                                Definition: ERF_DataStruct.H:638
                                -
                                SolverChoice::custom_forcing_prim_vars
                                bool custom_forcing_prim_vars
                                Definition: ERF_DataStruct.H:597
                                -
                                SolverChoice::rayleigh_damp_W
                                bool rayleigh_damp_W
                                Definition: ERF_DataStruct.H:566
                                -
                                SolverChoice::pert_type
                                PerturbationType pert_type
                                Definition: ERF_DataStruct.H:613
                                -
                                SolverChoice::poisson_abstol
                                amrex::Real poisson_abstol
                                Definition: ERF_DataStruct.H:552
                                -
                                SolverChoice::time_avg_vel
                                bool time_avg_vel
                                Definition: ERF_DataStruct.H:610
                                -
                                SolverChoice::do_cloud
                                bool do_cloud
                                Definition: ERF_DataStruct.H:636
                                -
                                SolverChoice::use_rotate_most
                                bool use_rotate_most
                                Definition: ERF_DataStruct.H:607
                                -
                                SolverChoice::rayleigh_dampcoef
                                amrex::Real rayleigh_dampcoef
                                Definition: ERF_DataStruct.H:568
                                -
                                SolverChoice::windfarm_airfoil_tables
                                std::string windfarm_airfoil_tables
                                Definition: ERF_DataStruct.H:648
                                -
                                SolverChoice::ave_plane
                                int ave_plane
                                Definition: ERF_DataStruct.H:634
                                +
                                SolverChoice::rayleigh_damp_T
                                bool rayleigh_damp_T
                                Definition: ERF_DataStruct.H:572
                                +
                                SolverChoice::dz0
                                amrex::Real dz0
                                Definition: ERF_DataStruct.H:588
                                +
                                SolverChoice::use_explicit_most
                                bool use_explicit_most
                                Definition: ERF_DataStruct.H:609
                                +
                                SolverChoice::rayleigh_damp_V
                                bool rayleigh_damp_V
                                Definition: ERF_DataStruct.H:570
                                +
                                SolverChoice::RhoQr_comp
                                int RhoQr_comp
                                Definition: ERF_DataStruct.H:651
                                +
                                SolverChoice::poisson_reltol
                                amrex::Real poisson_reltol
                                Definition: ERF_DataStruct.H:558
                                +
                                SolverChoice::rayleigh_zdamp
                                amrex::Real rayleigh_zdamp
                                Definition: ERF_DataStruct.H:574
                                +
                                SolverChoice::rdOcp
                                amrex::Real rdOcp
                                Definition: ERF_DataStruct.H:583
                                +
                                SolverChoice::read_int_string
                                void read_int_string(int max_level, const char *string_to_read, amrex::Vector< int > &vec_to_fill, int default_int)
                                Definition: ERF_DataStruct.H:513
                                +
                                SolverChoice::windfarm_spec_table
                                std::string windfarm_spec_table
                                Definition: ERF_DataStruct.H:653
                                +
                                SolverChoice::use_mono_adv
                                bool use_mono_adv
                                Definition: ERF_DataStruct.H:625
                                +
                                SolverChoice::build_coriolis_forcings
                                void build_coriolis_forcings()
                                Definition: ERF_DataStruct.H:470
                                +
                                SolverChoice::ncorr
                                int ncorr
                                Definition: ERF_DataStruct.H:556
                                +
                                SolverChoice::windfarm_spec_table_extra
                                std::string windfarm_spec_table_extra
                                Definition: ERF_DataStruct.H:653
                                +
                                SolverChoice::lsm_type
                                LandSurfaceType lsm_type
                                Definition: ERF_DataStruct.H:631
                                +
                                SolverChoice::c_p
                                amrex::Real c_p
                                Definition: ERF_DataStruct.H:582
                                +
                                SolverChoice::windfarm_loc_table
                                std::string windfarm_loc_table
                                Definition: ERF_DataStruct.H:653
                                +
                                SolverChoice::gravity
                                amrex::Real gravity
                                Definition: ERF_DataStruct.H:581
                                +
                                SolverChoice::check_params
                                void check_params(int max_level)
                                Definition: ERF_DataStruct.H:368
                                +
                                SolverChoice::custom_rhotheta_forcing
                                bool custom_rhotheta_forcing
                                Definition: ERF_DataStruct.H:598
                                +
                                SolverChoice::custom_w_subsidence
                                bool custom_w_subsidence
                                Definition: ERF_DataStruct.H:600
                                +
                                SolverChoice::nudging_from_input_sounding
                                bool nudging_from_input_sounding
                                Definition: ERF_DataStruct.H:606
                                +
                                SolverChoice::rayleigh_damp_U
                                bool rayleigh_damp_U
                                Definition: ERF_DataStruct.H:569
                                +
                                SolverChoice::RhoQc_comp
                                int RhoQc_comp
                                Definition: ERF_DataStruct.H:645
                                +
                                SolverChoice::custom_geostrophic_profile
                                bool custom_geostrophic_profile
                                Definition: ERF_DataStruct.H:601
                                +
                                SolverChoice::grid_stretching_ratio
                                amrex::Real grid_stretching_ratio
                                Definition: ERF_DataStruct.H:586
                                +
                                SolverChoice::have_geo_wind_profile
                                bool have_geo_wind_profile
                                Definition: ERF_DataStruct.H:637
                                +
                                SolverChoice::NumDiffCoeff
                                amrex::Real NumDiffCoeff
                                Definition: ERF_DataStruct.H:622
                                +
                                SolverChoice::do_precip
                                bool do_precip
                                Definition: ERF_DataStruct.H:642
                                +
                                SolverChoice::RhoQv_comp
                                int RhoQv_comp
                                Definition: ERF_DataStruct.H:644
                                +
                                SolverChoice::test_mapfactor
                                bool test_mapfactor
                                Definition: ERF_DataStruct.H:560
                                +
                                SolverChoice::use_NumDiff
                                bool use_NumDiff
                                Definition: ERF_DataStruct.H:621
                                +
                                SolverChoice::custom_moisture_forcing
                                bool custom_moisture_forcing
                                Definition: ERF_DataStruct.H:599
                                +
                                SolverChoice::windfarm_blade_table
                                std::string windfarm_blade_table
                                Definition: ERF_DataStruct.H:654
                                +
                                SolverChoice::zsurf
                                amrex::Real zsurf
                                Definition: ERF_DataStruct.H:587
                                +
                                SolverChoice::project_initial_velocity
                                bool project_initial_velocity
                                Definition: ERF_DataStruct.H:590
                                +
                                SolverChoice::constant_density
                                int constant_density
                                Definition: ERF_DataStruct.H:555
                                +
                                SolverChoice::use_moist_background
                                bool use_moist_background
                                Definition: ERF_DataStruct.H:643
                                +
                                SolverChoice::custom_forcing_prim_vars
                                bool custom_forcing_prim_vars
                                Definition: ERF_DataStruct.H:602
                                +
                                SolverChoice::rayleigh_damp_W
                                bool rayleigh_damp_W
                                Definition: ERF_DataStruct.H:571
                                +
                                SolverChoice::pert_type
                                PerturbationType pert_type
                                Definition: ERF_DataStruct.H:618
                                +
                                SolverChoice::poisson_abstol
                                amrex::Real poisson_abstol
                                Definition: ERF_DataStruct.H:557
                                +
                                SolverChoice::time_avg_vel
                                bool time_avg_vel
                                Definition: ERF_DataStruct.H:615
                                +
                                SolverChoice::do_cloud
                                bool do_cloud
                                Definition: ERF_DataStruct.H:641
                                +
                                SolverChoice::use_rotate_most
                                bool use_rotate_most
                                Definition: ERF_DataStruct.H:612
                                +
                                SolverChoice::rayleigh_dampcoef
                                amrex::Real rayleigh_dampcoef
                                Definition: ERF_DataStruct.H:573
                                +
                                SolverChoice::windfarm_airfoil_tables
                                std::string windfarm_airfoil_tables
                                Definition: ERF_DataStruct.H:654
                                +
                                SolverChoice::ave_plane
                                int ave_plane
                                Definition: ERF_DataStruct.H:639
                                SpongeChoice::init_params
                                void init_params()
                                Definition: ERF_SpongeStruct.H:17

                                Here is the call graph for this function:
                                @@ -1021,20 +1030,20 @@

                                -
                                510  {
                                -
                                511  amrex::ParmParse pp("erf");
                                -
                                512  int nvals = pp.countval(string_to_read);
                                -
                                513  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
                                -
                                514  amrex::Vector<int> temp; temp.resize(nvals);
                                -
                                515  pp.queryarr(string_to_read,temp);
                                -
                                516  if (nvals == 0) {
                                -
                                517  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(default_int);
                                -
                                518  } else if (nvals == 1) {
                                -
                                519  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[0]);
                                -
                                520  } else {
                                -
                                521  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[i]);
                                -
                                522  }
                                -
                                523  }
                                +
                                515  {
                                +
                                516  amrex::ParmParse pp("erf");
                                +
                                517  int nvals = pp.countval(string_to_read);
                                +
                                518  AMREX_ALWAYS_ASSERT(nvals == 0 || nvals == 1 || nvals >= max_level+1);
                                +
                                519  amrex::Vector<int> temp; temp.resize(nvals);
                                +
                                520  pp.queryarr(string_to_read,temp);
                                +
                                521  if (nvals == 0) {
                                +
                                522  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(default_int);
                                +
                                523  } else if (nvals == 1) {
                                +
                                524  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[0]);
                                +
                                525  } else {
                                +
                                526  for (int i = 0; i <= max_level; ++i) vec_to_fill.push_back(temp[i]);
                                +
                                527  }
                                +
                                528  }

                                Referenced by init_params().

                                @@ -1080,10 +1089,10 @@

                                -
                                533  {
                                -
                                534  terrain_is_flat = true;
                                -
                                535  }
                                -
                                SolverChoice::terrain_is_flat
                                static bool terrain_is_flat
                                Definition: ERF_DataStruct.H:526
                                +
                                538  {
                                +
                                539  terrain_is_flat = true;
                                +
                                540  }
                                +
                                SolverChoice::terrain_is_flat
                                static bool terrain_is_flat
                                Definition: ERF_DataStruct.H:531

                                Referenced by ProblemBase::init_custom_terrain().

                                @@ -1833,6 +1842,22 @@

                                Referenced by SAM::Define(), init_params(), and make_buoyancy().

                                +

                                +
                                + +

                                ◆ RhoQc_comp

                                + +
                                +
                                + + + + +
                                int SolverChoice::RhoQc_comp {-1}
                                +
                                + +

                                Referenced by ComputeTurbulentViscosity(), DiffusionSrcForState_N(), DiffusionSrcForState_T(), and init_params().

                                +
                                diff --git a/structSolverChoice.js b/structSolverChoice.js index 4669c9a84c..b948340b01 100644 --- a/structSolverChoice.js +++ b/structSolverChoice.js @@ -52,6 +52,7 @@ var structSolverChoice = [ "rayleigh_zdamp", "structSolverChoice.html#a29517ec608149342f25aa89f18204fac", null ], [ "rayleigh_ztop", "structSolverChoice.html#a5ffe405695bf4304d2ea61be6efaca1c", null ], [ "rdOcp", "structSolverChoice.html#a2e1ef762ee1dc1bd3d4cbd08125c758a", null ], + [ "RhoQc_comp", "structSolverChoice.html#a5dc385a342ac6c50e0f9a638a0e31f9f", null ], [ "RhoQr_comp", "structSolverChoice.html#a1d9237205fd632dcde1599511f203131", null ], [ "RhoQv_comp", "structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061", null ], [ "sampling_distance_by_D", "structSolverChoice.html#a9029114db3f1983d2d720210dcf87c69", null ], diff --git a/structSolverChoice__coll__graph.md5 b/structSolverChoice__coll__graph.md5 index 3130422c36..f9a131fba0 100644 --- a/structSolverChoice__coll__graph.md5 +++ b/structSolverChoice__coll__graph.md5 @@ -1 +1 @@ -2436ae7c294bdb668824dec77b8800f9 \ No newline at end of file +424d95a89cf0713ce9c9bcd71611adee \ No newline at end of file diff --git a/structSolverChoice__coll__graph.png b/structSolverChoice__coll__graph.png index f0c3f42d9d..bab8cd8c54 100644 Binary files a/structSolverChoice__coll__graph.png and b/structSolverChoice__coll__graph.png differ diff --git a/structTurbChoice.html b/structTurbChoice.html index 0bfc72a3cc..9894ae86c9 100644 --- a/structTurbChoice.html +++ b/structTurbChoice.html @@ -556,7 +556,7 @@

                                -

                                Referenced by ComputeDiffusivityMYNN25(), DiffusionSrcForState_N(), DiffusionSrcForState_T(), display(), and init_params().

                                +

                                Referenced by ComputeDiffusivityMYNN25(), DiffusionSrcForState_N(), DiffusionSrcForState_T(), display(), and init_params().

                                @@ -572,7 +572,7 @@

                                -

                                Referenced by ComputeDiffusivityMYNN25(), and init_params().

                                +

                                Referenced by ComputeDiffusivityMYNN25(), and init_params().