From 50e3feae90985b4787c01841fe52967fd89e4e94 Mon Sep 17 00:00:00 2001 From: ewquon Date: Thu, 26 Oct 2023 04:33:00 +0000 Subject: [PATCH] Deployed from erf-model/ERF --- ABLMost_8H_source.html | 377 +-- ComputeTurbulentViscosity_8cpp.html | 2 +- DataStruct_8H_source.html | 446 ++-- ERF_8H_source.html | 827 +++---- ERF__make__buoyancy_8cpp.html | 6 +- ERF__slow__rhs__inc_8cpp.html | 34 +- ERF__slow__rhs__post_8cpp.html | 184 +- ERF__slow__rhs__pre_8cpp.html | 40 +- InputSoundingData_8H_source.html | 350 +-- MOSTStress_8H_source.html | 683 +++--- Microphysics_8H_source.html | 4 +- PBLModels_8cpp.html | 2 +- classABLMost-members.html | 20 +- classABLMost.html | 628 ++--- classABLMost.js | 4 +- classABLMost__coll__graph.md5 | 2 +- classABLMost__coll__graph.png | Bin 152989 -> 152996 bytes classERF.html | 3014 ++++++++++++------------ classMicrophysics.html | 4 +- functions_d.html | 6 +- functions_e.html | 3 + functions_func_u.html | 5 +- functions_s.html | 9 +- functions_u.html | 5 +- 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search/variables_a.js | 8 +- search/variables_b.js | 38 +- search/variables_c.js | 230 +- search/variables_d.js | 98 +- search/variables_e.js | 16 +- search/variables_f.js | 106 +- structInputSoundingData.html | 314 +-- structSolverChoice.html | 290 +-- structdonelan__flux.html | 254 +- structmoeng__flux-members.html | 5 +- structmoeng__flux.html | 229 +- structmoeng__flux.js | 1 + structmoeng__flux__coll__graph.map | 5 +- structmoeng__flux__coll__graph.md5 | 2 +- structmoeng__flux__coll__graph.png | Bin 2809 -> 4701 bytes 214 files changed, 7166 insertions(+), 6878 deletions(-) diff --git a/ABLMost_8H_source.html b/ABLMost_8H_source.html index d835d2c169..806ea54813 100644 --- a/ABLMost_8H_source.html +++ b/ABLMost_8H_source.html @@ -142,200 +142,229 @@
54  auto erf_st = pp.query("most.surf_temp", surf_temp);
55  if (erf_st) {
56  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
57  } else {
-
58  pp.query("most.surf_temp_flux", surf_temp_flux);
-
59  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
-
60  theta_type = ThetaCalcType::HEAT_FLUX;
-
61  } else {
-
62  theta_type = ThetaCalcType::ADIABATIC;
-
63  }
-
64  }
-
65 
-
66  // Specify how to compute the flux
-
67  std::string rough_string{"constant"};
-
68  pp.query("most.roughness_type", rough_string);
-
69  if (rough_string == "constant") {
-
70  rough_type = RoughCalcType::CONSTANT;
-
71  } else if (rough_string == "charnock") {
-
72  rough_type = RoughCalcType::CHARNOCK;
-
73  pp.query("most.charnock_constant",cnk_a);
-
74  } else if (rough_string == "modified_charnock") {
-
75  rough_type = RoughCalcType::MODIFIED_CHARNOCK;
-
76  pp.query("most.modified_charnock_depth",depth);
-
77  } else {
-
78  amrex::Abort("Undefined MOST roughness type!");
-
79  }
-
80 
-
81  int nlevs = m_geom.size();
-
82  z_0.resize(nlevs);
-
83  u_star.resize(nlevs);
-
84  t_star.resize(nlevs);
-
85  t_surf.resize(nlevs);
-
86  olen.resize(nlevs);
-
87 
-
88  for (int lev = 0; lev < nlevs; lev++)
-
89  {
-
90  // Z0 heights
-
91  //--------------------------------------------------------
-
92  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng_in);
-
93  bx.setSmall(2,0);
-
94  bx.setBig(2,0);
-
95  z_0[lev].resize(bx,1);
-
96  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
-
97 
-
98  // 2D MFs for U*, T*, T_surf
+
57  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
+
58  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
+
59  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
+
60  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
61  }
+
62  } else {
+
63  pp.query("most.surf_temp_flux", surf_temp_flux);
+
64  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
+
65  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
66  }
+
67  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
+
68  theta_type = ThetaCalcType::HEAT_FLUX;
+
69  } else {
+
70  theta_type = ThetaCalcType::ADIABATIC;
+
71  }
+
72  }
+
73 
+
74  // Specify how to compute the flux
+
75  std::string rough_string{"constant"};
+
76  pp.query("most.roughness_type", rough_string);
+
77  if (rough_string == "constant") {
+
78  rough_type = RoughCalcType::CONSTANT;
+
79  } else if (rough_string == "charnock") {
+
80  rough_type = RoughCalcType::CHARNOCK;
+
81  pp.query("most.charnock_constant",cnk_a);
+
82  } else if (rough_string == "modified_charnock") {
+
83  rough_type = RoughCalcType::MODIFIED_CHARNOCK;
+
84  pp.query("most.modified_charnock_depth",depth);
+
85  } else {
+
86  amrex::Abort("Undefined MOST roughness type!");
+
87  }
+
88 
+
89  int nlevs = m_geom.size();
+
90  z_0.resize(nlevs);
+
91  u_star.resize(nlevs);
+
92  t_star.resize(nlevs);
+
93  t_surf.resize(nlevs);
+
94  olen.resize(nlevs);
+
95 
+
96  for (int lev = 0; lev < nlevs; lev++)
+
97  {
+
98  // Z0 heights
99  //--------------------------------------------------------
-
100  { // CC vars
-
101  auto& mf = vars_old[lev][Vars::cons];
-
102  // Create a 2D ba, dm, & ghost cells
-
103  amrex::BoxArray ba = mf.boxArray();
-
104  amrex::BoxList bl2d = ba.boxList();
-
105  for (auto& b : bl2d) {
-
106  b.setRange(2,0);
-
107  }
-
108  amrex::BoxArray ba2d(std::move(bl2d));
-
109  const amrex::DistributionMapping& dm = mf.DistributionMap();
-
110  const int ncomp = 1;
-
111  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
-
112 
-
113  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
114  u_star[lev]->setVal(1.E34);
-
115 
-
116  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
117  t_star[lev]->setVal(1.E34);
-
118 
-
119  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
120  olen[lev]->setVal(1.E34);
-
121 
-
122  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
123  if (erf_st) {
-
124  t_surf[lev]->setVal(surf_temp);
-
125  } else {
-
126  t_surf[lev]->setVal(0.0);
-
127  }
-
128  }
-
129  }// lev
-
130  }
-
131 
-
132  void
-
133  impose_most_bcs (const int lev,
-
134  const amrex::Vector<amrex::MultiFab*>& mfs,
-
135  amrex::MultiFab* eddyDiffs,
-
136  amrex::MultiFab* z_phys);
-
137 
-
138  template<typename FluxCalc>
-
139  void
-
140  compute_most_bcs (const int lev,
-
141  const amrex::Vector<amrex::MultiFab*>& mfs,
-
142  amrex::MultiFab* eddyDiffs,
-
143  amrex::MultiFab* z_phys,
-
144  const amrex::Real& dz_no_terrain,
-
145  const FluxCalc& flux_comp);
-
146 
-
147  void
-
148  update_fluxes (int lev, int max_iters = 25);
-
149 
-
150  template <typename FluxIter>
-
151  void
-
152  compute_fluxes (const int& lev,
-
153  const int& max_iters,
-
154  const FluxIter& most_flux);
+
100  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng_in);
+
101  bx.setSmall(2,0);
+
102  bx.setBig(2,0);
+
103  z_0[lev].resize(bx,1);
+
104  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
+
105 
+
106  // 2D MFs for U*, T*, T_surf
+
107  //--------------------------------------------------------
+
108  { // CC vars
+
109  auto& mf = vars_old[lev][Vars::cons];
+
110  // Create a 2D ba, dm, & ghost cells
+
111  amrex::BoxArray ba = mf.boxArray();
+
112  amrex::BoxList bl2d = ba.boxList();
+
113  for (auto& b : bl2d) {
+
114  b.setRange(2,0);
+
115  }
+
116  amrex::BoxArray ba2d(std::move(bl2d));
+
117  const amrex::DistributionMapping& dm = mf.DistributionMap();
+
118  const int ncomp = 1;
+
119  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
+
120 
+
121  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
122  u_star[lev]->setVal(1.E34);
+
123 
+
124  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
125  t_star[lev]->setVal(1.E34);
+
126 
+
127  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
128  olen[lev]->setVal(1.E34);
+
129 
+
130  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
131  if (erf_st) {
+
132  t_surf[lev]->setVal(surf_temp);
+
133  } else {
+
134  t_surf[lev]->setVal(0.0);
+
135  }
+
136  }
+
137  }// lev
+
138  }
+
139 
+
140  void
+
141  update_surf_temp (amrex::Real cur_time)
+
142  {
+
143  if (surf_heating_rate != 0) {
+
144  int nlevs = m_geom.size();
+
145  for (int lev = 0; lev < nlevs; lev++)
+
146  {
+
147  t_surf[lev]->setVal(surf_temp + surf_heating_rate*cur_time);
+
148  amrex::Print() << "Surface temp at t=" << cur_time
+
149  << ": "
+
150  << surf_temp + surf_heating_rate*cur_time
+
151  << std::endl;
+
152  }
+
153  }
+
154  }
155 
156  void
-
157  update_mac_ptrs (int lev,
-
158  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
-
159  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim)
-
160  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim); }
+
157  impose_most_bcs (const int lev,
+
158  const amrex::Vector<amrex::MultiFab*>& mfs,
+
159  amrex::MultiFab* eddyDiffs,
+
160  amrex::MultiFab* z_phys);
161 
-
162  const amrex::MultiFab*
-
163  get_u_star (int lev) { return u_star[lev].get(); }
-
164 
-
165  const amrex::MultiFab*
-
166  get_t_star (int lev) { return t_star[lev].get(); }
-
167 
-
168  const amrex::MultiFab*
-
169  get_olen (int lev) { return olen[lev].get(); }
+
162  template<typename FluxCalc>
+
163  void
+
164  compute_most_bcs (const int lev,
+
165  const amrex::Vector<amrex::MultiFab*>& mfs,
+
166  amrex::MultiFab* eddyDiffs,
+
167  amrex::MultiFab* z_phys,
+
168  const amrex::Real& dz_no_terrain,
+
169  const FluxCalc& flux_comp);
170 
-
171  const amrex::MultiFab*
-
172  get_mac_avg (int lev, int comp) { return m_ma.get_average(lev,comp); }
-
173 
-
174  enum struct FluxCalcType {
-
175  MOENG = 0, ///< Moeng functional form
-
176  DONELAN ///< Donelan functional form
-
177  };
-
178 
-
179  enum struct ThetaCalcType {
-
180  ADIABATIC = 0,
-
181  HEAT_FLUX, ///< Heat-flux specified
-
182  SURFACE_TEMPERATURE ///< Surface temperature specified
-
183  };
-
184 
-
185  enum struct RoughCalcType {
-
186  CONSTANT = 0, ///< Constant z0
-
187  CHARNOCK,
-
188  MODIFIED_CHARNOCK
-
189  };
+
171  void
+
172  update_fluxes (int lev,
+
173  amrex::Real cur_time,
+
174  int max_iters = 25);
+
175 
+
176  template <typename FluxIter>
+
177  void
+
178  compute_fluxes (const int& lev,
+
179  const int& max_iters,
+
180  const FluxIter& most_flux);
+
181 
+
182  void
+
183  update_mac_ptrs (int lev,
+
184  amrex::Vector<amrex::Vector<amrex::MultiFab>>& vars_old,
+
185  amrex::Vector<std::unique_ptr<amrex::MultiFab>>& Theta_prim)
+
186  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim); }
+
187 
+
188  const amrex::MultiFab*
+
189  get_u_star (int lev) { return u_star[lev].get(); }
190 
-
191  FluxCalcType flux_type;
-
192  ThetaCalcType theta_type;
-
193  RoughCalcType rough_type;
-
194 
-
195 private:
-
196  amrex::Real z0_const;
-
197  amrex::Real surf_temp;
-
198  amrex::Real surf_temp_flux{0};
-
199  amrex::Real cnk_a{0.0185};
-
200  amrex::Real depth{30.0};
-
201  amrex::Vector<amrex::Geometry> m_geom;
-
202  amrex::Vector<amrex::FArrayBox> z_0;
-
203 
-
204  MOSTAverage m_ma;
-
205  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
-
206  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
-
207  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
-
208  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
-
209 };
+
191  const amrex::MultiFab*
+
192  get_t_star (int lev) { return t_star[lev].get(); }
+
193 
+
194  const amrex::MultiFab*
+
195  get_olen (int lev) { return olen[lev].get(); }
+
196 
+
197  const amrex::MultiFab*
+
198  get_mac_avg (int lev, int comp) { return m_ma.get_average(lev,comp); }
+
199 
+
200  enum struct FluxCalcType {
+
201  MOENG = 0, ///< Moeng functional form
+
202  DONELAN ///< Donelan functional form
+
203  };
+
204 
+
205  enum struct ThetaCalcType {
+
206  ADIABATIC = 0,
+
207  HEAT_FLUX, ///< Heat-flux specified
+
208  SURFACE_TEMPERATURE ///< Surface temperature specified
+
209  };
210 
-
211 #endif /* ABLMOST_H */
+
211  enum struct RoughCalcType {
+
212  CONSTANT = 0, ///< Constant z0
+
213  CHARNOCK,
+
214  MODIFIED_CHARNOCK
+
215  };
+
216 
+
217  FluxCalcType flux_type;
+
218  ThetaCalcType theta_type;
+
219  RoughCalcType rough_type;
+
220 
+
221 private:
+
222  amrex::Real z0_const;
+
223  amrex::Real surf_temp;
+
224  amrex::Real surf_heating_rate{0};
+
225  amrex::Real surf_temp_flux{0};
+
226  amrex::Real cnk_a{0.0185};
+
227  amrex::Real depth{30.0};
+
228  amrex::Vector<amrex::Geometry> m_geom;
+
229  amrex::Vector<amrex::FArrayBox> z_0;
+
230 
+
231  MOSTAverage m_ma;
+
232  amrex::Vector<std::unique_ptr<amrex::MultiFab>> u_star;
+
233  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_star;
+
234  amrex::Vector<std::unique_ptr<amrex::MultiFab>> olen;
+
235  amrex::Vector<std::unique_ptr<amrex::MultiFab>> t_surf;
+
236 };
+
237 
+
238 #endif /* ABLMOST_H */
ERF_Constants.H
IndexDefines.H
MOSTAverage.H
MOSTStress.H
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: Microphysics_Utils.H:187
ABLMost
Definition: ABLMost.H:27
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:207
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:202
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:201
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:208
-
ABLMost::update_fluxes
void update_fluxes(int lev, int max_iters=25)
Definition: ABLMost.cpp:13
-
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:200
-
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(int lev)
Definition: ABLMost.H:163
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:204
-
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ABLMost.H:179
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:234
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:229
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:228
+
ABLMost::update_surf_temp
void update_surf_temp(amrex::Real cur_time)
Definition: ABLMost.H:141
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:235
+
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:227
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:224
+
ABLMost::get_u_star
const amrex::MultiFab * get_u_star(int lev)
Definition: ABLMost.H:189
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:231
+
ABLMost::ThetaCalcType
ThetaCalcType
Definition: ABLMost.H:205
ABLMost::ThetaCalcType::ADIABATIC
@ ADIABATIC
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
-
ABLMost::update_mac_ptrs
void update_mac_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim)
Definition: ABLMost.H:157
+
ABLMost::update_mac_ptrs
void update_mac_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim)
Definition: ABLMost.H:183
ABLMost::compute_most_bcs
void compute_most_bcs(const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
-
ABLMost::impose_most_bcs
void impose_most_bcs(const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys)
Definition: ABLMost.cpp:109
-
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux)
Definition: ABLMost.cpp:68
+
ABLMost::impose_most_bcs
void impose_most_bcs(const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys)
Definition: ABLMost.cpp:111
+
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux)
Definition: ABLMost.cpp:70
ABLMost::ABLMost
ABLMost(const amrex::Vector< amrex::Geometry > &geom, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd, int ng_in)
Definition: ABLMost.H:32
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:197
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:199
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:192
-
ABLMost::FluxCalcType
FluxCalcType
Definition: ABLMost.H:174
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:223
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:226
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:218
+
ABLMost::FluxCalcType
FluxCalcType
Definition: ABLMost.H:200
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::rough_type
RoughCalcType rough_type
Definition: ABLMost.H:193
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:198
-
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(int lev, int comp)
Definition: ABLMost.H:172
-
ABLMost::get_olen
const amrex::MultiFab * get_olen(int lev)
Definition: ABLMost.H:169
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:206
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:205
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:196
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:191
-
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(int lev)
Definition: ABLMost.H:166
-
ABLMost::RoughCalcType
RoughCalcType
Definition: ABLMost.H:185
+
ABLMost::rough_type
RoughCalcType rough_type
Definition: ABLMost.H:219
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:225
+
ABLMost::get_mac_avg
const amrex::MultiFab * get_mac_avg(int lev, int comp)
Definition: ABLMost.H:198
+
ABLMost::update_fluxes
void update_fluxes(int lev, amrex::Real cur_time, int max_iters=25)
Definition: ABLMost.cpp:13
+
ABLMost::get_olen
const amrex::MultiFab * get_olen(int lev)
Definition: ABLMost.H:195
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:233
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:232
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:222
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:217
+
ABLMost::get_t_star
const amrex::MultiFab * get_t_star(int lev)
Definition: ABLMost.H:192
+
ABLMost::RoughCalcType
RoughCalcType
Definition: ABLMost.H:211
ABLMost::RoughCalcType::MODIFIED_CHARNOCK
@ MODIFIED_CHARNOCK
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
ABLMost::RoughCalcType::CHARNOCK
@ CHARNOCK
diff --git a/ComputeTurbulentViscosity_8cpp.html b/ComputeTurbulentViscosity_8cpp.html index a77382d549..ead8ec62dd 100644 --- a/ComputeTurbulentViscosity_8cpp.html +++ b/ComputeTurbulentViscosity_8cpp.html @@ -1160,7 +1160,7 @@

227 
228  amrex::Real SM = (R2*E2 - R1*E4)/(E2*E3 - E1*E4);
229  amrex::Real SH = (R1*E3 - R2*E1)/(E2*E3 - E1*E4);
-
230  amrex::Real SQ = 3.0 * SM;
+
230  amrex::Real SQ = 3.0 * SM; // Nakanishi & Niino 2009
231 
232  // Finally, compute the eddy viscosity/diffusivities
233  const amrex::Real rho = cell_data(i,j,k,Rho_comp);
diff --git a/DataStruct_8H_source.html b/DataStruct_8H_source.html index 51df92e763..0cffdaad2c 100644 --- a/DataStruct_8H_source.html +++ b/DataStruct_8H_source.html @@ -212,194 +212,200 @@
124  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];
125 
126  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
-
127  pp.queryarr("abl_geo_forcing",abl_geo_forcing_in);
-
128  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_geo_forcing[i] = abl_geo_forcing_in[i];
-
129 
-
130  if (use_coriolis)
-
131  {
-
132  build_coriolis_forcings();
-
133  }
-
134 
-
135  pp.query("Ave_Plane", ave_plane);
-
136 
-
137 #ifdef ERF_USE_MOISTURE
-
138  pp.query("mp_clouds", do_cloud);
-
139  pp.query("mp_precip", do_precip);
-
140 #endif
-
141 
-
142  // Use numerical diffusion?
-
143  pp.query("use_NumDiff",use_NumDiff);
-
144  if(use_NumDiff) {
-
145  pp.query("NumDiffCoeff",NumDiffCoeff);
-
146  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
-
147  "Numerical diffusion coefficient must be between 0 & 1.");
-
148  NumDiffCoeff *= std::pow(2.0,-6);
-
149  }
-
150 
-
151  advChoice.init_params();
-
152  diffChoice.init_params();
-
153  spongeChoice.init_params();
-
154 
-
155  turbChoice.resize(max_level+1);
-
156  for (int lev = 0; lev <= max_level; lev++) {
-
157  turbChoice[lev].init_params(lev,max_level);
-
158  }
-
159 
-
160  // If running LES/PBL then must use "ConstantAlpha"
-
161  for (int lev = 0; lev <= max_level; lev++) {
-
162  if (turbChoice[lev].les_type != LESType::None) {
-
163  if ( diffChoice.molec_diff_type == MolecDiffType::ConstantAlpha ) {
-
164  amrex::Error("We don't allow LES with MolecDiffType::ConstantAlpha");
-
165  }
-
166  }
-
167  }
-
168  }
-
169 
-
170  void display()
-
171  {
-
172  amrex::Print() << "SOLVER CHOICE: " << std::endl;
-
173  amrex::Print() << "no_substepping : " << no_substepping << std::endl;
-
174  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
-
175  amrex::Print() << "incompressible : " << incompressible << std::endl;
-
176  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
-
177  amrex::Print() << "use_rayleigh_damping : " << use_rayleigh_damping << std::endl;
-
178  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
-
179 
-
180  if (abl_driver_type == ABLDriverType::None) {
-
181  amrex::Print() << "ABL Driver Type: " << "None" << std::endl;
-
182  amrex::Print() << "No ABL driver selected " << std::endl;
-
183  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
-
184  amrex::Print() << "ABL Driver Type: " << "PressureGradient" << std::endl;
-
185  amrex::Print() << "Driving abl_pressure_grad: (";
-
186  for (int i = 0; i < AMREX_SPACEDIM; ++i)
-
187  amrex::Print() << abl_pressure_grad[i] << " ";
-
188  amrex::Print() << ")" << std::endl;
-
189  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
-
190  amrex::Print() << "ABL Driver Type: " << "GeostrophicWind" << std::endl;
-
191  amrex::Print() << "Driving abl_geo_forcing: (";
+
127  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
+
128  amrex::Print() << "Specified abl_geo_forcing: (";
+
129  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
+
130  abl_geo_forcing[i] = abl_geo_forcing_in[i];
+
131  amrex::Print() << abl_geo_forcing[i] << " ";
+
132  }
+
133  amrex::Print() << ")" << std::endl;
+
134  }
+
135 
+
136  if (use_coriolis)
+
137  {
+
138  build_coriolis_forcings();
+
139  }
+
140 
+
141  pp.query("Ave_Plane", ave_plane);
+
142 
+
143 #ifdef ERF_USE_MOISTURE
+
144  pp.query("mp_clouds", do_cloud);
+
145  pp.query("mp_precip", do_precip);
+
146 #endif
+
147 
+
148  // Use numerical diffusion?
+
149  pp.query("use_NumDiff",use_NumDiff);
+
150  if(use_NumDiff) {
+
151  pp.query("NumDiffCoeff",NumDiffCoeff);
+
152  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
+
153  "Numerical diffusion coefficient must be between 0 & 1.");
+
154  NumDiffCoeff *= std::pow(2.0,-6);
+
155  }
+
156 
+
157  advChoice.init_params();
+
158  diffChoice.init_params();
+
159  spongeChoice.init_params();
+
160 
+
161  turbChoice.resize(max_level+1);
+
162  for (int lev = 0; lev <= max_level; lev++) {
+
163  turbChoice[lev].init_params(lev,max_level);
+
164  }
+
165 
+
166  // If running LES/PBL then must use "ConstantAlpha"
+
167  for (int lev = 0; lev <= max_level; lev++) {
+
168  if (turbChoice[lev].les_type != LESType::None) {
+
169  if ( diffChoice.molec_diff_type == MolecDiffType::ConstantAlpha ) {
+
170  amrex::Error("We don't allow LES with MolecDiffType::ConstantAlpha");
+
171  }
+
172  }
+
173  }
+
174  }
+
175 
+
176  void display()
+
177  {
+
178  amrex::Print() << "SOLVER CHOICE: " << std::endl;
+
179  amrex::Print() << "no_substepping : " << no_substepping << std::endl;
+
180  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
+
181  amrex::Print() << "incompressible : " << incompressible << std::endl;
+
182  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
+
183  amrex::Print() << "use_rayleigh_damping : " << use_rayleigh_damping << std::endl;
+
184  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
+
185 
+
186  if (abl_driver_type == ABLDriverType::None) {
+
187  amrex::Print() << "ABL Driver Type: " << "None" << std::endl;
+
188  amrex::Print() << "No ABL driver selected " << std::endl;
+
189  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
+
190  amrex::Print() << "ABL Driver Type: " << "PressureGradient" << std::endl;
+
191  amrex::Print() << "Driving abl_pressure_grad: (";
192  for (int i = 0; i < AMREX_SPACEDIM; ++i)
-
193  amrex::Print() << abl_geo_forcing[i] << " ";
+
193  amrex::Print() << abl_pressure_grad[i] << " ";
194  amrex::Print() << ")" << std::endl;
-
195  }
-
196 
-
197  advChoice.display();
-
198  diffChoice.display();
-
199  spongeChoice.display();
-
200 
-
201  int max_level = turbChoice.size()-1;
-
202  for (int lev = 0; lev <= max_level; lev++) {
-
203  turbChoice[lev].display(lev);
-
204  }
-
205  }
+
195  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
+
196  amrex::Print() << "ABL Driver Type: " << "GeostrophicWind" << std::endl;
+
197  amrex::Print() << "Driving abl_geo_forcing: (";
+
198  for (int i = 0; i < AMREX_SPACEDIM; ++i)
+
199  amrex::Print() << abl_geo_forcing[i] << " ";
+
200  amrex::Print() << ")" << std::endl;
+
201  }
+
202 
+
203  advChoice.display();
+
204  diffChoice.display();
+
205  spongeChoice.display();
206 
-
207  void build_coriolis_forcings()
-
208  {
-
209  amrex::ParmParse pp(pp_prefix);
-
210 
-
211  // Read the rotational time period (in seconds)
-
212  amrex::Real rot_time_period = 86400.0;
-
213  pp.query("rotational_time_period", rot_time_period);
-
214 
-
215  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
-
216  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
-
217 
-
218  amrex::Real latitude = 90.0;
-
219  pp.query("latitude", latitude);
+
207  int max_level = turbChoice.size()-1;
+
208  for (int lev = 0; lev <= max_level; lev++) {
+
209  turbChoice[lev].display(lev);
+
210  }
+
211  }
+
212 
+
213  void build_coriolis_forcings()
+
214  {
+
215  amrex::ParmParse pp(pp_prefix);
+
216 
+
217  // Read the rotational time period (in seconds)
+
218  amrex::Real rot_time_period = 86400.0;
+
219  pp.query("rotational_time_period", rot_time_period);
220 
-
221  // Convert to radians
-
222  latitude *= (PI/180.);
-
223  sinphi = std::sin(latitude);
-
224  cosphi = std::cos(latitude);
-
225 
-
226  if (abl_driver_type == ABLDriverType::GeostrophicWind)
-
227  {
-
228  // Read in the geostrophic wind -- we only use this to construct
-
229  // the forcing term so no need to keep it
-
230  amrex::Vector<amrex::Real> abl_geo_wind(3);
-
231  pp.queryarr("abl_geo_wind",abl_geo_wind);
-
232 
-
233  abl_geo_forcing = {
-
234  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
-
235  coriolis_factor * abl_geo_wind[0]*sinphi,
-
236  -coriolis_factor * abl_geo_wind[0]*cosphi
-
237  };
-
238  }
-
239  }
-
240 
-
241  AdvChoice advChoice;
-
242  DiffChoice diffChoice;
-
243  SpongeChoice spongeChoice;
-
244  amrex::Vector<TurbChoice> turbChoice;
-
245 
-
246  // Default prefix
-
247  std::string pp_prefix {"erf"};
-
248 
-
249  int no_substepping = 0;
-
250  int force_stage1_single_substep = 1;
-
251  int incompressible = 0;
-
252 
-
253  bool test_mapfactor = false;
+
221  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
+
222  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
+
223 
+
224  amrex::Real latitude = 90.0;
+
225  pp.query("latitude", latitude);
+
226 
+
227  // Convert to radians
+
228  latitude *= (PI/180.);
+
229  sinphi = std::sin(latitude);
+
230  cosphi = std::cos(latitude);
+
231 
+
232  if (abl_driver_type == ABLDriverType::GeostrophicWind)
+
233  {
+
234  // Read in the geostrophic wind -- we only use this to construct
+
235  // the forcing term so no need to keep it
+
236  amrex::Vector<amrex::Real> abl_geo_wind(3);
+
237  pp.queryarr("abl_geo_wind",abl_geo_wind);
+
238 
+
239  abl_geo_forcing = {
+
240  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
+
241  coriolis_factor * abl_geo_wind[0]*sinphi,
+
242  -coriolis_factor * abl_geo_wind[0]*cosphi
+
243  };
+
244  }
+
245  }
+
246 
+
247  AdvChoice advChoice;
+
248  DiffChoice diffChoice;
+
249  SpongeChoice spongeChoice;
+
250  amrex::Vector<TurbChoice> turbChoice;
+
251 
+
252  // Default prefix
+
253  std::string pp_prefix {"erf"};
254 
-
255  bool use_terrain = false;
-
256  int terrain_type = 0;
-
257 #ifdef ERF_USE_MOISTURE
-
258  int buoyancy_type = 2; // uses Tprime
-
259 #else
-
260  int buoyancy_type = 1; // uses rhoprime directly
-
261 #endif
-
262 
-
263  // Specify what additional physics/forcing modules we use
-
264  bool use_gravity = false;
-
265  bool use_coriolis = false;
-
266  bool use_rayleigh_damping = false;
-
267 
-
268  bool rayleigh_damp_U = false;
-
269  bool rayleigh_damp_V = false;
-
270  bool rayleigh_damp_W = true;
-
271  bool rayleigh_damp_T = false;
-
272 
-
273  // This defaults to true but can be set to false for moving terrain cases only
-
274  bool use_lagged_delta_rt = true;
-
275 
-
276  // Constants
-
277  amrex::Real gravity;
-
278  amrex::Real c_p = Cp_d; // specific heat at constant pressure for dry air [J/(kg-K)]
-
279  amrex::Real rdOcp;
-
280 
-
281  // Staggered z levels for vertical grid stretching
-
282  amrex::Real grid_stretching_ratio = 0;
-
283  amrex::Real zsurf = 0.0;
-
284  amrex::Real dz0;
-
285 
-
286 #if defined(ERF_USE_WARM_NO_PRECIP)
-
287  amrex::Real tau_cond = 1.0; // Default time of 1 sec -- this is somewhat arbitray
-
288 #endif
-
289 
-
290 #if defined(ERF_USE_POISSON_SOLVE)
-
291  int project_initial_velocity = 1;
-
292 #endif
-
293 
-
294  // Coriolis forcing
-
295  amrex::Real coriolis_factor = 0.0;
-
296  amrex::Real cosphi = 0.0 ;
-
297  amrex::Real sinphi = 0.0;
-
298 
-
299  // Numerical diffusion
-
300  bool use_NumDiff{false};
-
301  amrex::Real NumDiffCoeff{0.};
-
302 
-
303  ABLDriverType abl_driver_type;
-
304  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_pressure_grad;
-
305  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_geo_forcing;
-
306 
-
307  int ave_plane {2};
-
308 #ifdef ERF_USE_MOISTURE
-
309  // Microphysics params
-
310  bool do_cloud {true};
-
311  bool do_precip {true};
-
312 #endif
-
313 };
-
314 #endif
+
255  int no_substepping = 0;
+
256  int force_stage1_single_substep = 1;
+
257  int incompressible = 0;
+
258 
+
259  bool test_mapfactor = false;
+
260 
+
261  bool use_terrain = false;
+
262  int terrain_type = 0;
+
263 #ifdef ERF_USE_MOISTURE
+
264  int buoyancy_type = 2; // uses Tprime
+
265 #else
+
266  int buoyancy_type = 1; // uses rhoprime directly
+
267 #endif
+
268 
+
269  // Specify what additional physics/forcing modules we use
+
270  bool use_gravity = false;
+
271  bool use_coriolis = false;
+
272  bool use_rayleigh_damping = false;
+
273 
+
274  bool rayleigh_damp_U = false;
+
275  bool rayleigh_damp_V = false;
+
276  bool rayleigh_damp_W = true;
+
277  bool rayleigh_damp_T = false;
+
278 
+
279  // This defaults to true but can be set to false for moving terrain cases only
+
280  bool use_lagged_delta_rt = true;
+
281 
+
282  // Constants
+
283  amrex::Real gravity;
+
284  amrex::Real c_p = Cp_d; // specific heat at constant pressure for dry air [J/(kg-K)]
+
285  amrex::Real rdOcp;
+
286 
+
287  // Staggered z levels for vertical grid stretching
+
288  amrex::Real grid_stretching_ratio = 0;
+
289  amrex::Real zsurf = 0.0;
+
290  amrex::Real dz0;
+
291 
+
292 #if defined(ERF_USE_WARM_NO_PRECIP)
+
293  amrex::Real tau_cond = 1.0; // Default time of 1 sec -- this is somewhat arbitray
+
294 #endif
+
295 
+
296 #if defined(ERF_USE_POISSON_SOLVE)
+
297  int project_initial_velocity = 1;
+
298 #endif
+
299 
+
300  // Coriolis forcing
+
301  amrex::Real coriolis_factor = 0.0;
+
302  amrex::Real cosphi = 0.0 ;
+
303  amrex::Real sinphi = 0.0;
+
304 
+
305  // Numerical diffusion
+
306  bool use_NumDiff{false};
+
307  amrex::Real NumDiffCoeff{0.};
+
308 
+
309  ABLDriverType abl_driver_type;
+
310  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_pressure_grad;
+
311  amrex::GpuArray<amrex::Real, AMREX_SPACEDIM> abl_geo_forcing;
+
312 
+
313  int ave_plane {2};
+
314 #ifdef ERF_USE_MOISTURE
+
315  // Microphysics params
+
316  bool do_cloud {true};
+
317  bool do_precip {true};
+
318 #endif
+
319 };
+
320 #endif
Coord
Coord
Definition: DataStruct.H:23
@@ -429,44 +435,44 @@
DiffChoice::display
void display()
Definition: DiffStruct.H:56
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: DiffStruct.H:76
SolverChoice
Definition: DataStruct.H:31
-
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:255
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:271
-
SolverChoice::dz0
amrex::Real dz0
Definition: DataStruct.H:284
-
SolverChoice::use_lagged_delta_rt
bool use_lagged_delta_rt
Definition: DataStruct.H:274
-
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:295
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:269
-
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:266
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: DataStruct.H:279
-
SolverChoice::no_substepping
int no_substepping
Definition: DataStruct.H:249
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:242
-
SolverChoice::use_gravity
bool use_gravity
Definition: DataStruct.H:264
-
SolverChoice::build_coriolis_forcings
void build_coriolis_forcings()
Definition: DataStruct.H:207
-
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: DataStruct.H:250
-
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:296
-
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:278
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::pp_prefix
std::string pp_prefix
Definition: DataStruct.H:247
-
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:305
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:268
-
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: DataStruct.H:282
-
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:297
-
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:304
-
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:256
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:301
+
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:261
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:277
+
SolverChoice::dz0
amrex::Real dz0
Definition: DataStruct.H:290
+
SolverChoice::use_lagged_delta_rt
bool use_lagged_delta_rt
Definition: DataStruct.H:280
+
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:301
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:275
+
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:272
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: DataStruct.H:285
+
SolverChoice::no_substepping
int no_substepping
Definition: DataStruct.H:255
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:248
+
SolverChoice::use_gravity
bool use_gravity
Definition: DataStruct.H:270
+
SolverChoice::build_coriolis_forcings
void build_coriolis_forcings()
Definition: DataStruct.H:213
+
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: DataStruct.H:256
+
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:302
+
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:284
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::pp_prefix
std::string pp_prefix
Definition: DataStruct.H:253
+
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:311
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:274
+
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: DataStruct.H:288
+
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:303
+
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:310
+
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:262
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:307
SolverChoice::init_params
void init_params(int max_level)
Definition: DataStruct.H:33
-
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: DataStruct.H:253
-
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:265
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:300
-
SolverChoice::zsurf
amrex::Real zsurf
Definition: DataStruct.H:283
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:244
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:241
-
SolverChoice::display
void display()
Definition: DataStruct.H:170
-
SolverChoice::abl_driver_type
ABLDriverType abl_driver_type
Definition: DataStruct.H:303
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:270
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: DataStruct.H:243
-
SolverChoice::buoyancy_type
int buoyancy_type
Definition: DataStruct.H:260
-
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:251
-
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:307
+
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: DataStruct.H:259
+
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:271
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:306
+
SolverChoice::zsurf
amrex::Real zsurf
Definition: DataStruct.H:289
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:250
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:247
+
SolverChoice::display
void display()
Definition: DataStruct.H:176
+
SolverChoice::abl_driver_type
ABLDriverType abl_driver_type
Definition: DataStruct.H:309
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:276
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: DataStruct.H:249
+
SolverChoice::buoyancy_type
int buoyancy_type
Definition: DataStruct.H:266
+
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:257
+
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:313
SpongeChoice
Definition: SpongeStruct.H:15
SpongeChoice::display
void display()
Definition: SpongeStruct.H:43
SpongeChoice::init_params
void init_params()
Definition: SpongeStruct.H:17
diff --git a/ERF_8H_source.html b/ERF_8H_source.html index c49205ad04..659fb398e4 100644 --- a/ERF_8H_source.html +++ b/ERF_8H_source.html @@ -741,333 +741,338 @@
653  // Note that the order of variable names here must match the order in Derive.cpp
654  const amrex::Vector<std::string> derived_names {"pressure", "soundspeed", "temp", "theta", "KE", "QKE", "scalar",
655  "pres_hse", "dens_hse", "pert_pres", "pert_dens",
-
656  "dpdx", "dpdy", "pres_hse_x", "pres_hse_y", "z_phys", "detJ" , "mapfac"
-
657 #if defined(ERF_USE_MOISTURE)
-
658  ,"qt", "qp", "qv", "qc", "qi", "qrain", "qsnow", "qgraup"
-
659 #elif defined(ERF_USE_WARM_NO_PRECIP)
-
660  ,"qv", "qc"
-
661 #endif
-
662 #ifdef ERF_COMPUTE_ERROR
-
663  ,"xvel_err", "yvel_err", "zvel_err", "pp_err"
-
664 #endif
-
665 #ifdef ERF_USE_PARTICLES
-
666  ,"particle_count"
-
667 #endif
-
668  };
-
669 
-
670  // algorithm choices
-
671  static SolverChoice solverChoice;
-
672 
-
673  static int verbose;
+
656  "dpdx", "dpdy", "pres_hse_x", "pres_hse_y",
+
657  "z_phys", "detJ" , "mapfac",
+
658  // eddy viscosity
+
659  "Kmv","Kmh",
+
660  // eddy diffusivity of heat
+
661  "Khv","Khh"
+
662 #if defined(ERF_USE_MOISTURE)
+
663  ,"qt", "qp", "qv", "qc", "qi", "qrain", "qsnow", "qgraup"
+
664 #elif defined(ERF_USE_WARM_NO_PRECIP)
+
665  ,"qv", "qc"
+
666 #endif
+
667 #ifdef ERF_COMPUTE_ERROR
+
668  ,"xvel_err", "yvel_err", "zvel_err", "pp_err"
+
669 #endif
+
670 #ifdef ERF_USE_PARTICLES
+
671  ,"particle_count"
+
672 #endif
+
673  };
674 
-
675  // flag to turn tracer particle generation on/off
-
676  static bool use_tracer_particles;
+
675  // algorithm choices
+
676  static SolverChoice solverChoice;
677 
-
678  // mesh refinement
-
679  static std::string coupling_type;
-
680 
-
681  // Diagnostic output interval
-
682  static int sum_interval;
-
683  static amrex::Real sum_per;
-
684 
-
685  // Native or NetCDF
-
686  static std::string plotfile_type;
-
687 
-
688  // init_type: "ideal", "real", "input_sounding", "metgrid" or ""
-
689  static std::string init_type;
-
690 
-
691  // NetCDF initialization (wrfinput) file
-
692  static amrex::Vector<amrex::Vector<std::string>> nc_init_file;
-
693 
-
694  // NetCDF initialization (wrfbdy) file
-
695  static std::string nc_bdy_file;
-
696  int wrfbdy_width{0};
-
697  int wrfbdy_set_width{0};
+
678  static int verbose;
+
679 
+
680  // flag to turn tracer particle generation on/off
+
681  static bool use_tracer_particles;
+
682 
+
683  // mesh refinement
+
684  static std::string coupling_type;
+
685 
+
686  // Diagnostic output interval
+
687  static int sum_interval;
+
688  static amrex::Real sum_per;
+
689 
+
690  // Native or NetCDF
+
691  static std::string plotfile_type;
+
692 
+
693  // init_type: "ideal", "real", "input_sounding", "metgrid" or ""
+
694  static std::string init_type;
+
695 
+
696  // NetCDF initialization (wrfinput) file
+
697  static amrex::Vector<amrex::Vector<std::string>> nc_init_file;
698 
-
699  // Text input_sounding file
-
700  static std::string input_sounding_file;
-
701 
-
702  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
-
703  // used with init_type == "input_sounding"
-
704  static bool init_sounding_ideal;
-
705 
-
706  // 1D CDF output (for ingestion in AMR-Wind)
-
707  static int output_1d_column;
-
708  static int column_interval;
-
709  static amrex::Real column_per;
-
710  static amrex::Real column_loc_x;
-
711  static amrex::Real column_loc_y;
-
712  static std::string column_file_name;
-
713 
-
714  // 2D BndryRegister output (for ingestion in AMR-Wind)
-
715  static int output_bndry_planes;
-
716  static int bndry_output_planes_interval;
-
717  static amrex::Real bndry_output_planes_per;
-
718  static amrex::Real bndry_output_planes_start_time;
-
719 
-
720  // 2D BndryRegister input
-
721  static int input_bndry_planes;
-
722 
-
723  static int ng_dens_hse;
-
724  static int ng_pres_hse;
-
725 
-
726  // Mean quantities and tau for Rayleigh damping
-
727  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_tau;
-
728  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_ubar;
-
729  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_vbar;
-
730  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_wbar;
-
731  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_thetabar;
-
732  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_tau;
-
733  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_ubar;
-
734  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_vbar;
-
735  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_wbar;
-
736  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_thetabar;
-
737 
-
738  amrex::Vector<amrex::Real> h_havg_density;
-
739  amrex::Vector<amrex::Real> h_havg_temperature;
-
740  amrex::Vector<amrex::Real> h_havg_pressure;
-
741 #ifdef ERF_USE_MOISTURE
-
742  amrex::Vector<amrex::Real> h_havg_qv;
-
743  amrex::Vector<amrex::Real> h_havg_qc;
-
744 #endif
-
745  amrex::Gpu::DeviceVector<amrex::Real> d_havg_density;
-
746  amrex::Gpu::DeviceVector<amrex::Real> d_havg_temperature;
-
747  amrex::Gpu::DeviceVector<amrex::Real> d_havg_pressure;
-
748 #ifdef ERF_USE_MOISTURE
-
749  amrex::Gpu::DeviceVector<amrex::Real> d_havg_qv;
-
750  amrex::Gpu::DeviceVector<amrex::Real> d_havg_qc;
-
751 #endif
-
752 
-
753  void refinement_criteria_setup();
-
754 
-
755  std::unique_ptr<WriteBndryPlanes> m_w2d = nullptr;
-
756  std::unique_ptr<ReadBndryPlanes> m_r2d = nullptr;
-
757  std::unique_ptr<ABLMost> m_most = nullptr;
-
758 
-
759  //
-
760  // Holds info for dynamically generated tagging criteria
-
761  //
-
762  static amrex::Vector<amrex::AMRErrorTag> ref_tags;
+
699  // NetCDF initialization (wrfbdy) file
+
700  static std::string nc_bdy_file;
+
701  int wrfbdy_width{0};
+
702  int wrfbdy_set_width{0};
+
703 
+
704  // Text input_sounding file
+
705  static std::string input_sounding_file;
+
706 
+
707  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
+
708  // used with init_type == "input_sounding"
+
709  static bool init_sounding_ideal;
+
710 
+
711  // 1D CDF output (for ingestion in AMR-Wind)
+
712  static int output_1d_column;
+
713  static int column_interval;
+
714  static amrex::Real column_per;
+
715  static amrex::Real column_loc_x;
+
716  static amrex::Real column_loc_y;
+
717  static std::string column_file_name;
+
718 
+
719  // 2D BndryRegister output (for ingestion in AMR-Wind)
+
720  static int output_bndry_planes;
+
721  static int bndry_output_planes_interval;
+
722  static amrex::Real bndry_output_planes_per;
+
723  static amrex::Real bndry_output_planes_start_time;
+
724 
+
725  // 2D BndryRegister input
+
726  static int input_bndry_planes;
+
727 
+
728  static int ng_dens_hse;
+
729  static int ng_pres_hse;
+
730 
+
731  // Mean quantities and tau for Rayleigh damping
+
732  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_tau;
+
733  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_ubar;
+
734  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_vbar;
+
735  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_wbar;
+
736  amrex::Vector<amrex::Vector<amrex::Real> > h_rayleigh_thetabar;
+
737  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_tau;
+
738  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_ubar;
+
739  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_vbar;
+
740  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_wbar;
+
741  amrex::Vector<amrex::Gpu::DeviceVector<amrex::Real> > d_rayleigh_thetabar;
+
742 
+
743  amrex::Vector<amrex::Real> h_havg_density;
+
744  amrex::Vector<amrex::Real> h_havg_temperature;
+
745  amrex::Vector<amrex::Real> h_havg_pressure;
+
746 #ifdef ERF_USE_MOISTURE
+
747  amrex::Vector<amrex::Real> h_havg_qv;
+
748  amrex::Vector<amrex::Real> h_havg_qc;
+
749 #endif
+
750  amrex::Gpu::DeviceVector<amrex::Real> d_havg_density;
+
751  amrex::Gpu::DeviceVector<amrex::Real> d_havg_temperature;
+
752  amrex::Gpu::DeviceVector<amrex::Real> d_havg_pressure;
+
753 #ifdef ERF_USE_MOISTURE
+
754  amrex::Gpu::DeviceVector<amrex::Real> d_havg_qv;
+
755  amrex::Gpu::DeviceVector<amrex::Real> d_havg_qc;
+
756 #endif
+
757 
+
758  void refinement_criteria_setup();
+
759 
+
760  std::unique_ptr<WriteBndryPlanes> m_w2d = nullptr;
+
761  std::unique_ptr<ReadBndryPlanes> m_r2d = nullptr;
+
762  std::unique_ptr<ABLMost> m_most = nullptr;
763 
764  //
-
765  // Build a mask that zeroes out values on a coarse level underlying
-
766  // grids on the next finest level
-
767  //
-
768  amrex::MultiFab fine_mask;
-
769 
-
770  amrex::Real dz_min;
-
771 
-
772  static AMREX_FORCE_INLINE
-
773  int
-
774  ComputeGhostCells (const AdvChoice& advChoice, bool use_num_diff)
-
775  {
-
776  if (use_num_diff)
-
777  {
-
778  return 3;
-
779  } else {
-
780  if (
-
781  (advChoice.dycore_horiz_adv_type == AdvType::Centered_6th)
-
782  || (advChoice.dycore_vert_adv_type == AdvType::Centered_6th)
-
783 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
784  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
-
785  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
-
786 #endif
-
787  || (advChoice.dryscal_horiz_adv_type == AdvType::Centered_6th)
-
788  || (advChoice.dryscal_vert_adv_type == AdvType::Centered_6th) )
-
789  { return 3; }
-
790  else if (
-
791  (advChoice.dycore_horiz_adv_type == AdvType::Upwind_5th)
-
792  || (advChoice.dycore_vert_adv_type == AdvType::Upwind_5th)
-
793 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
794  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
-
795  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
-
796 #endif
-
797  || (advChoice.dryscal_horiz_adv_type == AdvType::Upwind_5th)
-
798  || (advChoice.dryscal_vert_adv_type == AdvType::Upwind_5th) )
-
799  { return 3; }
-
800  else if (
-
801  (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5)
-
802  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5)
-
803 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
804  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5)
-
805  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5)
-
806  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5Z)
-
807  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5Z)
-
808 #endif
-
809  || (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5Z)
-
810  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5Z) )
-
811  { return 3; }
-
812  else
-
813  { return 2; }
-
814  }
-
815  }
-
816 
-
817  AMREX_FORCE_INLINE
-
818  amrex::FluxRegister&
-
819  get_flux_reg (int lev)
-
820  {
-
821  return *flux_registers[lev];
-
822  }
-
823 
-
824  AMREX_FORCE_INLINE
-
825  std::ostream&
-
826  DataLog (int i)
-
827  {
-
828  return *datalog[i];
-
829  }
-
830 
-
831  AMREX_FORCE_INLINE
-
832  int
-
833  NumDataLogs () noexcept
-
834  {
-
835  return datalog.size();
-
836  }
-
837 
-
838  AMREX_FORCE_INLINE
-
839  std::ostream&
-
840  SamplePointLog (int i)
-
841  {
-
842  return *sampleptlog[i];
-
843  }
-
844 
-
845  AMREX_FORCE_INLINE
-
846  int
-
847  NumSamplePointLogs () noexcept
-
848  {
-
849  return sampleptlog.size();
-
850  }
-
851 
-
852  AMREX_FORCE_INLINE
-
853  std::ostream&
-
854  SampleLineLog (int i)
-
855  {
-
856  return *samplelinelog[i];
-
857  }
-
858 
-
859  AMREX_FORCE_INLINE
-
860  int
-
861  NumSampleLineLogs () noexcept
-
862  {
-
863  return samplelinelog.size();
-
864  }
-
865 
-
866  amrex::IntVect&
-
867  SamplePoint (int i)
-
868  {
-
869  return samplepoint[i];
-
870  }
-
871 
-
872  AMREX_FORCE_INLINE
-
873  int
-
874  NumSamplePoints () noexcept
-
875  {
-
876  return samplepoint.size();
-
877  }
-
878 
-
879  amrex::IntVect&
-
880  SampleLine (int i)
-
881  {
-
882  return sampleline[i];
-
883  }
-
884 
-
885  AMREX_FORCE_INLINE
-
886  int
-
887  NumSampleLines () noexcept
-
888  {
-
889  return sampleline.size();
-
890  }
-
891 
-
892  static amrex::Real startCPUTime;
-
893  static amrex::Real previousCPUTimeUsed;
-
894 
-
895  static amrex::Real
-
896  getCPUTime ()
-
897  {
-
898  int numCores = amrex::ParallelDescriptor::NProcs();
-
899 #ifdef _OPENMP
-
900  numCores = numCores * omp_get_max_threads();
-
901 #endif
-
902 
-
903  amrex::Real T =
-
904  numCores * (amrex::ParallelDescriptor::second() - startCPUTime) +
-
905  previousCPUTimeUsed;
-
906 
-
907  return T;
-
908  }
-
909 
-
910  void setRecordDataInfo (int i, const std::string& filename) // NOLINT
-
911  {
-
912  if (amrex::ParallelDescriptor::IOProcessor())
-
913  {
-
914  datalog[i] = std::make_unique<std::fstream>();
-
915  datalog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
916  if (!datalog[i]->good()) {
-
917  amrex::FileOpenFailed(filename);
-
918  }
-
919  }
-
920  amrex::ParallelDescriptor::Barrier("ERF::setRecordDataInfo");
-
921  }
-
922 
-
923  void setRecordSamplePointInfo (int i, int lev, amrex::IntVect& cell, const std::string& filename) // NOLINT
-
924  {
-
925  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
-
926  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
-
927  {
-
928  const amrex::Box& bx = mfi.validbox();
-
929  if (bx.contains(cell)) {
-
930  sampleptlog[i] = std::make_unique<std::fstream>();
-
931  sampleptlog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
932  if (!sampleptlog[i]->good()) {
-
933  amrex::FileOpenFailed(filename);
-
934  }
-
935  }
-
936  }
-
937  amrex::ParallelDescriptor::Barrier("ERF::setRecordSamplePointInfo");
-
938  }
-
939 
-
940  void setRecordSampleLineInfo (int i, int lev, amrex::IntVect& cell, const std::string& filename) // NOLINT
-
941  {
-
942  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
-
943  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
-
944  {
-
945  const amrex::Box& bx = mfi.validbox();
-
946  if (bx.contains(cell)) {
-
947  samplelinelog[i] = std::make_unique<std::fstream>();
-
948  samplelinelog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
949  if (!samplelinelog[i]->good()) {
-
950  amrex::FileOpenFailed(filename);
-
951  }
-
952  }
-
953  }
-
954  amrex::ParallelDescriptor::Barrier("ERF::setRecordSampleLineInfo");
-
955  }
-
956 
-
957  amrex::Vector<std::unique_ptr<std::fstream> > datalog;
-
958  amrex::Vector<std::string> datalogname;
-
959 
-
960  amrex::Vector<std::unique_ptr<std::fstream> > sampleptlog;
-
961  amrex::Vector<std::string> sampleptlogname;
-
962  amrex::Vector<amrex::IntVect> samplepoint;
-
963 
-
964  amrex::Vector<std::unique_ptr<std::fstream> > samplelinelog;
-
965  amrex::Vector<std::string> samplelinelogname;
-
966  amrex::Vector<amrex::IntVect> sampleline;
-
967 
-
968  //! The filename of the ith datalog file.
-
969  [[nodiscard]] std::string DataLogName (int i) const noexcept { return datalogname[i]; }
-
970 
-
971  //! The filename of the ith sampleptlog file.
-
972  [[nodiscard]] std::string SamplePointLogName (int i) const noexcept { return sampleptlogname[i]; }
-
973 
-
974  //! The filename of the ith samplelinelog file.
-
975  [[nodiscard]] std::string SampleLineLogName (int i) const noexcept { return samplelinelogname[i]; }
-
976 
-
977 public:
-
978  void writeJobInfo (const std::string& dir) const;
-
979  static void writeBuildInfo (std::ostream& os);
-
980 };
+
765  // Holds info for dynamically generated tagging criteria
+
766  //
+
767  static amrex::Vector<amrex::AMRErrorTag> ref_tags;
+
768 
+
769  //
+
770  // Build a mask that zeroes out values on a coarse level underlying
+
771  // grids on the next finest level
+
772  //
+
773  amrex::MultiFab fine_mask;
+
774 
+
775  amrex::Real dz_min;
+
776 
+
777  static AMREX_FORCE_INLINE
+
778  int
+
779  ComputeGhostCells (const AdvChoice& advChoice, bool use_num_diff)
+
780  {
+
781  if (use_num_diff)
+
782  {
+
783  return 3;
+
784  } else {
+
785  if (
+
786  (advChoice.dycore_horiz_adv_type == AdvType::Centered_6th)
+
787  || (advChoice.dycore_vert_adv_type == AdvType::Centered_6th)
+
788 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
789  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
+
790  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
+
791 #endif
+
792  || (advChoice.dryscal_horiz_adv_type == AdvType::Centered_6th)
+
793  || (advChoice.dryscal_vert_adv_type == AdvType::Centered_6th) )
+
794  { return 3; }
+
795  else if (
+
796  (advChoice.dycore_horiz_adv_type == AdvType::Upwind_5th)
+
797  || (advChoice.dycore_vert_adv_type == AdvType::Upwind_5th)
+
798 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
799  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
+
800  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
+
801 #endif
+
802  || (advChoice.dryscal_horiz_adv_type == AdvType::Upwind_5th)
+
803  || (advChoice.dryscal_vert_adv_type == AdvType::Upwind_5th) )
+
804  { return 3; }
+
805  else if (
+
806  (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5)
+
807  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5)
+
808 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
809  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5)
+
810  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5)
+
811  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5Z)
+
812  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5Z)
+
813 #endif
+
814  || (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5Z)
+
815  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5Z) )
+
816  { return 3; }
+
817  else
+
818  { return 2; }
+
819  }
+
820  }
+
821 
+
822  AMREX_FORCE_INLINE
+
823  amrex::FluxRegister&
+
824  get_flux_reg (int lev)
+
825  {
+
826  return *flux_registers[lev];
+
827  }
+
828 
+
829  AMREX_FORCE_INLINE
+
830  std::ostream&
+
831  DataLog (int i)
+
832  {
+
833  return *datalog[i];
+
834  }
+
835 
+
836  AMREX_FORCE_INLINE
+
837  int
+
838  NumDataLogs () noexcept
+
839  {
+
840  return datalog.size();
+
841  }
+
842 
+
843  AMREX_FORCE_INLINE
+
844  std::ostream&
+
845  SamplePointLog (int i)
+
846  {
+
847  return *sampleptlog[i];
+
848  }
+
849 
+
850  AMREX_FORCE_INLINE
+
851  int
+
852  NumSamplePointLogs () noexcept
+
853  {
+
854  return sampleptlog.size();
+
855  }
+
856 
+
857  AMREX_FORCE_INLINE
+
858  std::ostream&
+
859  SampleLineLog (int i)
+
860  {
+
861  return *samplelinelog[i];
+
862  }
+
863 
+
864  AMREX_FORCE_INLINE
+
865  int
+
866  NumSampleLineLogs () noexcept
+
867  {
+
868  return samplelinelog.size();
+
869  }
+
870 
+
871  amrex::IntVect&
+
872  SamplePoint (int i)
+
873  {
+
874  return samplepoint[i];
+
875  }
+
876 
+
877  AMREX_FORCE_INLINE
+
878  int
+
879  NumSamplePoints () noexcept
+
880  {
+
881  return samplepoint.size();
+
882  }
+
883 
+
884  amrex::IntVect&
+
885  SampleLine (int i)
+
886  {
+
887  return sampleline[i];
+
888  }
+
889 
+
890  AMREX_FORCE_INLINE
+
891  int
+
892  NumSampleLines () noexcept
+
893  {
+
894  return sampleline.size();
+
895  }
+
896 
+
897  static amrex::Real startCPUTime;
+
898  static amrex::Real previousCPUTimeUsed;
+
899 
+
900  static amrex::Real
+
901  getCPUTime ()
+
902  {
+
903  int numCores = amrex::ParallelDescriptor::NProcs();
+
904 #ifdef _OPENMP
+
905  numCores = numCores * omp_get_max_threads();
+
906 #endif
+
907 
+
908  amrex::Real T =
+
909  numCores * (amrex::ParallelDescriptor::second() - startCPUTime) +
+
910  previousCPUTimeUsed;
+
911 
+
912  return T;
+
913  }
+
914 
+
915  void setRecordDataInfo (int i, const std::string& filename) // NOLINT
+
916  {
+
917  if (amrex::ParallelDescriptor::IOProcessor())
+
918  {
+
919  datalog[i] = std::make_unique<std::fstream>();
+
920  datalog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
921  if (!datalog[i]->good()) {
+
922  amrex::FileOpenFailed(filename);
+
923  }
+
924  }
+
925  amrex::ParallelDescriptor::Barrier("ERF::setRecordDataInfo");
+
926  }
+
927 
+
928  void setRecordSamplePointInfo (int i, int lev, amrex::IntVect& cell, const std::string& filename) // NOLINT
+
929  {
+
930  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
+
931  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
+
932  {
+
933  const amrex::Box& bx = mfi.validbox();
+
934  if (bx.contains(cell)) {
+
935  sampleptlog[i] = std::make_unique<std::fstream>();
+
936  sampleptlog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
937  if (!sampleptlog[i]->good()) {
+
938  amrex::FileOpenFailed(filename);
+
939  }
+
940  }
+
941  }
+
942  amrex::ParallelDescriptor::Barrier("ERF::setRecordSamplePointInfo");
+
943  }
+
944 
+
945  void setRecordSampleLineInfo (int i, int lev, amrex::IntVect& cell, const std::string& filename) // NOLINT
+
946  {
+
947  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
+
948  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
+
949  {
+
950  const amrex::Box& bx = mfi.validbox();
+
951  if (bx.contains(cell)) {
+
952  samplelinelog[i] = std::make_unique<std::fstream>();
+
953  samplelinelog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
954  if (!samplelinelog[i]->good()) {
+
955  amrex::FileOpenFailed(filename);
+
956  }
+
957  }
+
958  }
+
959  amrex::ParallelDescriptor::Barrier("ERF::setRecordSampleLineInfo");
+
960  }
+
961 
+
962  amrex::Vector<std::unique_ptr<std::fstream> > datalog;
+
963  amrex::Vector<std::string> datalogname;
+
964 
+
965  amrex::Vector<std::unique_ptr<std::fstream> > sampleptlog;
+
966  amrex::Vector<std::string> sampleptlogname;
+
967  amrex::Vector<amrex::IntVect> samplepoint;
+
968 
+
969  amrex::Vector<std::unique_ptr<std::fstream> > samplelinelog;
+
970  amrex::Vector<std::string> samplelinelogname;
+
971  amrex::Vector<amrex::IntVect> sampleline;
+
972 
+
973  //! The filename of the ith datalog file.
+
974  [[nodiscard]] std::string DataLogName (int i) const noexcept { return datalogname[i]; }
+
975 
+
976  //! The filename of the ith sampleptlog file.
+
977  [[nodiscard]] std::string SamplePointLogName (int i) const noexcept { return sampleptlogname[i]; }
+
978 
+
979  //! The filename of the ith samplelinelog file.
+
980  [[nodiscard]] std::string SampleLineLogName (int i) const noexcept { return samplelinelogname[i]; }
981 
-
982 #endif
+
982 public:
+
983  void writeJobInfo (const std::string& dir) const;
+
984  static void writeBuildInfo (std::ostream& os);
+
985 };
+
986 
+
987 #endif
@@ -1089,93 +1094,93 @@
ERF
Definition: ERF.H:90
ERF::derive_diag_profiles
void derive_diag_profiles(amrex::Gpu::HostVector< amrex::Real > &h_avg_u, amrex::Gpu::HostVector< amrex::Real > &h_avg_v, amrex::Gpu::HostVector< amrex::Real > &h_avg_w, amrex::Gpu::HostVector< amrex::Real > &h_avg_rho, amrex::Gpu::HostVector< amrex::Real > &h_avg_th, amrex::Gpu::HostVector< amrex::Real > &h_avg_ksgs, amrex::Gpu::HostVector< amrex::Real > &h_avg_uu, amrex::Gpu::HostVector< amrex::Real > &h_avg_uv, amrex::Gpu::HostVector< amrex::Real > &h_avg_uw, amrex::Gpu::HostVector< amrex::Real > &h_avg_vv, amrex::Gpu::HostVector< amrex::Real > &h_avg_vw, amrex::Gpu::HostVector< amrex::Real > &h_avg_ww, amrex::Gpu::HostVector< amrex::Real > &h_avg_uth, amrex::Gpu::HostVector< amrex::Real > &h_avg_vth, amrex::Gpu::HostVector< amrex::Real > &h_avg_wth, amrex::Gpu::HostVector< amrex::Real > &h_avg_thth, amrex::Gpu::HostVector< amrex::Real > &h_avg_k, amrex::Gpu::HostVector< amrex::Real > &h_avg_ku, amrex::Gpu::HostVector< amrex::Real > &h_avg_kv, amrex::Gpu::HostVector< amrex::Real > &h_avg_kw, amrex::Gpu::HostVector< amrex::Real > &h_avg_p, amrex::Gpu::HostVector< amrex::Real > &h_avg_pu, amrex::Gpu::HostVector< amrex::Real > &h_avg_pv, amrex::Gpu::HostVector< amrex::Real > &h_avg_pw)
Definition: ERF_Write1DProfiles.cpp:147
-
ERF::MakeHorizontalAverages
void MakeHorizontalAverages()
Definition: ERF.cpp:1052
+
ERF::MakeHorizontalAverages
void MakeHorizontalAverages()
Definition: ERF.cpp:1070
ERF::rU_new
amrex::Vector< amrex::MultiFab > rU_new
Definition: ERF.H:522
ERF::last_check_file_step
int last_check_file_step
Definition: ERF.H:600
-
ERF::h_rayleigh_wbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_wbar
Definition: ERF.H:730
+
ERF::h_rayleigh_wbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_wbar
Definition: ERF.H:735
ERF::initRayleigh
void initRayleigh()
Initialize Rayleigh damping profiles.
Definition: ERF_init1d.cpp:17
ERF::Tau23_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau23_lev
Definition: ERF.H:545
ERF::boxes_at_level
amrex::Vector< amrex::Vector< amrex::Box > > boxes_at_level
Definition: ERF.H:497
-
ERF::m_most
std::unique_ptr< ABLMost > m_most
Definition: ERF.H:757
-
ERF::samplelinelogname
amrex::Vector< std::string > samplelinelogname
Definition: ERF.H:965
+
ERF::m_most
std::unique_ptr< ABLMost > m_most
Definition: ERF.H:762
+
ERF::samplelinelogname
amrex::Vector< std::string > samplelinelogname
Definition: ERF.H:970
ERF::max_step
int max_step
Definition: ERF.H:607
-
ERF::dz_min
amrex::Real dz_min
Definition: ERF.H:770
+
ERF::dz_min
amrex::Real dz_min
Definition: ERF.H:775
ERF::setRayleighRefFromSounding
void setRayleighRefFromSounding(bool restarting)
Set Rayleigh mean profiles from input sounding.
Definition: ERF_init1d.cpp:71
ERF::last_plot_file_step_2
int last_plot_file_step_2
Definition: ERF.H:598
ERF::mri_integrator_mem
amrex::Vector< std::unique_ptr< MRISplitIntegrator< amrex::Vector< amrex::MultiFab > > > > mri_integrator_mem
Definition: ERF.H:514
ERF::WritePlotFile
void WritePlotFile(int which, amrex::Vector< std::string > plot_var_names)
Definition: Plotfile.cpp:93
ERF::Evolve
void Evolve()
Definition: ERF.cpp:228
ERF::FPr_u
amrex::Vector< ERFFillPatcher > FPr_u
Definition: ERF.H:537
-
ERF::h_rayleigh_thetabar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_thetabar
Definition: ERF.H:731
+
ERF::h_rayleigh_thetabar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_thetabar
Definition: ERF.H:736
ERF::derive_stress_profiles
void derive_stress_profiles(amrex::Gpu::HostVector< amrex::Real > &h_avg_tau11, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau12, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau13, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau22, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau23, amrex::Gpu::HostVector< amrex::Real > &h_avg_tau33, amrex::Gpu::HostVector< amrex::Real > &h_avg_hfx3, amrex::Gpu::HostVector< amrex::Real > &h_avg_diss)
Definition: ERF_Write1DProfiles.cpp:290
-
ERF::sampleline
amrex::Vector< amrex::IntVect > sampleline
Definition: ERF.H:966
+
ERF::sampleline
amrex::Vector< amrex::IntVect > sampleline
Definition: ERF.H:971
ERF::vars_new
amrex::Vector< amrex::Vector< amrex::MultiFab > > vars_new
Definition: ERF.H:511
-
ERF::Register_ERFFillPatchers
void Register_ERFFillPatchers(int lev)
Definition: ERF.cpp:1263
+
ERF::Register_ERFFillPatchers
void Register_ERFFillPatchers(int lev)
Definition: ERF.cpp:1281
ERF::ERF
ERF(ERF &&) noexcept=delete
-
ERF::NumSampleLineLogs
AMREX_FORCE_INLINE int NumSampleLineLogs() noexcept
Definition: ERF.H:861
-
ERF::DataLogName
std::string DataLogName(int i) const noexcept
The filename of the ith datalog file.
Definition: ERF.H:969
-
ERF::WriteGenericPlotfileHeaderWithTerrain
void WriteGenericPlotfileHeaderWithTerrain(std::ostream &HeaderFile, int nlevels, const amrex::Vector< amrex::BoxArray > &bArray, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName, const std::string &levelPrefix, const std::string &mfPrefix) const
Definition: Plotfile.cpp:1005
+
ERF::NumSampleLineLogs
AMREX_FORCE_INLINE int NumSampleLineLogs() noexcept
Definition: ERF.H:866
+
ERF::DataLogName
std::string DataLogName(int i) const noexcept
The filename of the ith datalog file.
Definition: ERF.H:974
+
ERF::WriteGenericPlotfileHeaderWithTerrain
void WriteGenericPlotfileHeaderWithTerrain(std::ostream &HeaderFile, int nlevels, const amrex::Vector< amrex::BoxArray > &bArray, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName, const std::string &levelPrefix, const std::string &mfPrefix) const
Definition: Plotfile.cpp:1022
ERF::ErrorEst
void ErrorEst(int lev, amrex::TagBoxArray &tags, amrex::Real time, int ngrow) override
Definition: ERF_Tagging.cpp:15
ERF::plot_file_2
std::string plot_file_2
Definition: ERF.H:630
ERF::SFS_hfx3_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_hfx3_lev
Definition: ERF.H:550
-
ERF::h_rayleigh_tau
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_tau
Definition: ERF.H:727
-
ERF::datalog
amrex::Vector< std::unique_ptr< std::fstream > > datalog
Definition: ERF.H:957
+
ERF::h_rayleigh_tau
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_tau
Definition: ERF.H:732
+
ERF::datalog
amrex::Vector< std::unique_ptr< std::fstream > > datalog
Definition: ERF.H:962
ERF::FPr_v
amrex::Vector< ERFFillPatcher > FPr_v
Definition: ERF.H:538
ERF::cf_set_width
int cf_set_width
Definition: ERF.H:535
ERF::mapfac_u
amrex::Vector< std::unique_ptr< amrex::MultiFab > > mapfac_u
Definition: ERF.H:568
ERF::check_int
int check_int
Definition: ERF.H:641
ERF::erf_enforce_hse
void erf_enforce_hse(int lev, amrex::MultiFab &dens, amrex::MultiFab &pres, amrex::MultiFab &pi, std::unique_ptr< amrex::MultiFab > &z_cc, std::unique_ptr< amrex::MultiFab > &z_nd)
Definition: ERF_init1d.cpp:161
ERF::setPlotVariables
void setPlotVariables(const std::string &pp_plot_var_names, amrex::Vector< std::string > &plot_var_names)
Definition: Plotfile.cpp:16
-
ERF::d_havg_temperature
amrex::Gpu::DeviceVector< amrex::Real > d_havg_temperature
Definition: ERF.H:746
+
ERF::d_havg_temperature
amrex::Gpu::DeviceVector< amrex::Real > d_havg_temperature
Definition: ERF.H:751
ERF::Tau31_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau31_lev
Definition: ERF.H:544
ERF::fill_from_bndryregs
void fill_from_bndryregs(const amrex::Vector< amrex::MultiFab * > &mfs, amrex::Real time)
Definition: BoundaryConditions_bndryreg.cpp:13
ERF::mapfac_m
amrex::Vector< std::unique_ptr< amrex::MultiFab > > mapfac_m
Definition: ERF.H:567
-
ERF::setRecordDataInfo
void setRecordDataInfo(int i, const std::string &filename)
Definition: ERF.H:910
+
ERF::setRecordDataInfo
void setRecordDataInfo(int i, const std::string &filename)
Definition: ERF.H:915
ERF::SFS_hfx1_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_hfx1_lev
Definition: ERF.H:550
ERF::init_from_input_sounding
void init_from_input_sounding(int lev)
Definition: ERF_init_from_input_sounding.cpp:43
ERF::volWgtSumMF
amrex::Real volWgtSumMF(int lev, const amrex::MultiFab &mf, int comp, bool local, bool finemask)
Definition: ERF_WriteScalarProfiles.cpp:258
-
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:843
+
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:861
ERF::PlotFileVarNames
static amrex::Vector< std::string > PlotFileVarNames(amrex::Vector< std::string > plot_var_names)
Definition: Plotfile.cpp:81
ERF::InitializeFromFile
void InitializeFromFile()
-
ERF::init_sounding_ideal
static bool init_sounding_ideal
Definition: ERF.H:704
+
ERF::init_sounding_ideal
static bool init_sounding_ideal
Definition: ERF.H:709
ERF::flux_registers
amrex::Vector< amrex::FluxRegister * > flux_registers
Definition: ERF.H:577
ERF::ERF
ERF()
Definition: ERF.cpp:95
ERF::~ERF
~ERF() override
ERF::restart_type
std::string restart_type
Definition: ERF.H:640
-
ERF::column_loc_y
static amrex::Real column_loc_y
Definition: ERF.H:711
+
ERF::column_loc_y
static amrex::Real column_loc_y
Definition: ERF.H:716
ERF::z_phys_nd_src
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd_src
Definition: ERF.H:559
ERF::detJ_cc
amrex::Vector< std::unique_ptr< amrex::MultiFab > > detJ_cc
Definition: ERF.H:557
ERF::z_phys_cc
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_cc
Definition: ERF.H:556
ERF::eddyDiffs_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > eddyDiffs_lev
Definition: ERF.H:546
-
ERF::solverChoice
static SolverChoice solverChoice
Definition: ERF.H:671
+
ERF::solverChoice
static SolverChoice solverChoice
Definition: ERF.H:676
ERF::check_type
std::string check_type
Definition: ERF.H:639
ERF::FPr_c
amrex::Vector< ERFFillPatcher > FPr_c
Definition: ERF.H:536
ERF::base_state_new
amrex::Vector< amrex::MultiFab > base_state_new
Definition: ERF.H:574
-
ERF::d_rayleigh_wbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_wbar
Definition: ERF.H:735
-
ERF::startCPUTime
static amrex::Real startCPUTime
Definition: ERF.H:892
+
ERF::d_rayleigh_wbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_wbar
Definition: ERF.H:740
+
ERF::startCPUTime
static amrex::Real startCPUTime
Definition: ERF.H:897
ERF::regrid_int
int regrid_int
Definition: ERF.H:626
ERF::dt_mri_ratio
amrex::Vector< long > dt_mri_ratio
Definition: ERF.H:506
ERF::stop_time
amrex::Real stop_time
Definition: ERF.H:609
-
ERF::AverageDownTo
void AverageDownTo(int crse_lev)
Definition: ERF.cpp:1198
-
ERF::NumSamplePointLogs
AMREX_FORCE_INLINE int NumSamplePointLogs() noexcept
Definition: ERF.H:847
-
ERF::h_havg_pressure
amrex::Vector< amrex::Real > h_havg_pressure
Definition: ERF.H:740
+
ERF::AverageDownTo
void AverageDownTo(int crse_lev)
Definition: ERF.cpp:1216
+
ERF::NumSamplePointLogs
AMREX_FORCE_INLINE int NumSamplePointLogs() noexcept
Definition: ERF.H:852
+
ERF::h_havg_pressure
amrex::Vector< amrex::Real > h_havg_pressure
Definition: ERF.H:745
ERF::build_fine_mask
amrex::MultiFab & build_fine_mask(int lev)
Definition: ERF_WriteScalarProfiles.cpp:294
-
ERF::verbose
static int verbose
Definition: ERF.H:673
+
ERF::verbose
static int verbose
Definition: ERF.H:678
ERF::sst
amrex::Vector< std::unique_ptr< amrex::MultiFab > > sst
Definition: ERF.H:571
-
ERF::coupling_type
static std::string coupling_type
Definition: ERF.H:679
+
ERF::coupling_type
static std::string coupling_type
Definition: ERF.H:684
ERF::Advance
void Advance(int lev, amrex::Real time, amrex::Real dt_lev, int iteration, int ncycle)
Definition: ERF_Advance.cpp:17
-
ERF::bndry_output_planes_per
static amrex::Real bndry_output_planes_per
Definition: ERF.H:717
-
ERF::column_file_name
static std::string column_file_name
Definition: ERF.H:712
-
ERF::samplelinelog
amrex::Vector< std::unique_ptr< std::fstream > > samplelinelog
Definition: ERF.H:964
+
ERF::bndry_output_planes_per
static amrex::Real bndry_output_planes_per
Definition: ERF.H:722
+
ERF::column_file_name
static std::string column_file_name
Definition: ERF.H:717
+
ERF::samplelinelog
amrex::Vector< std::unique_ptr< std::fstream > > samplelinelog
Definition: ERF.H:969
ERF::base_state
amrex::Vector< amrex::MultiFab > base_state
Definition: ERF.H:573
-
ERF::d_rayleigh_thetabar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_thetabar
Definition: ERF.H:736
-
ERF::h_havg_density
amrex::Vector< amrex::Real > h_havg_density
Definition: ERF.H:738
+
ERF::d_rayleigh_thetabar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_thetabar
Definition: ERF.H:741
+
ERF::h_havg_density
amrex::Vector< amrex::Real > h_havg_density
Definition: ERF.H:743
ERF::z_phys_nd_new
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd_new
Definition: ERF.H:562
-
ERF::sum_interval
static int sum_interval
Definition: ERF.H:682
-
ERF::restart
void restart()
Definition: ERF.cpp:744
-
ERF::input_sounding_file
static std::string input_sounding_file
Definition: ERF.H:700
+
ERF::sum_interval
static int sum_interval
Definition: ERF.H:687
+
ERF::restart
void restart()
Definition: ERF.cpp:762
+
ERF::input_sounding_file
static std::string input_sounding_file
Definition: ERF.H:705
ERF::Tau13_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau13_lev
Definition: ERF.H:544
-
ERF::SampleLine
amrex::IntVect & SampleLine(int i)
Definition: ERF.H:880
+
ERF::SampleLine
amrex::IntVect & SampleLine(int i)
Definition: ERF.H:885
ERF::Tau21_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau21_lev
Definition: ERF.H:543
ERF::rV_new
amrex::Vector< amrex::MultiFab > rV_new
Definition: ERF.H:524
ERF::PlotFileName
std::string PlotFileName(int lev) const
@@ -1184,8 +1189,8 @@
ERF::domain_bcs_type
amrex::Vector< amrex::BCRec > domain_bcs_type
Definition: ERF.H:582
ERF::post_timestep
void post_timestep(int nstep, amrex::Real time, amrex::Real dt_lev)
Definition: ERF.cpp:314
ERF::pp_prefix
std::string pp_prefix
Definition: ERF.H:293
-
ERF::SampleLineLogName
std::string SampleLineLogName(int i) const noexcept
The filename of the ith samplelinelog file.
Definition: ERF.H:975
-
ERF::NumSamplePoints
AMREX_FORCE_INLINE int NumSamplePoints() noexcept
Definition: ERF.H:874
+
ERF::SampleLineLogName
std::string SampleLineLogName(int i) const noexcept
The filename of the ith samplelinelog file.
Definition: ERF.H:980
+
ERF::NumSamplePoints
AMREX_FORCE_INLINE int NumSamplePoints() noexcept
Definition: ERF.H:879
ERF::init_custom
void init_custom(int lev)
Definition: ERF_init_custom.cpp:25
ERF::Tau33_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau33_lev
Definition: ERF.H:542
ERF::prob
std::unique_ptr< ProblemBase > prob
Definition: ERF.H:493
@@ -1197,93 +1202,93 @@
ERF::t_new
amrex::Vector< amrex::Real > t_new
Definition: ERF.H:503
ERF::plot_var_names_1
amrex::Vector< std::string > plot_var_names_1
Definition: ERF.H:643
ERF::estTimeStep
amrex::Real estTimeStep(int lev, long &dt_fast_ratio) const
Definition: ERF_ComputeTimestep.cpp:49
-
ERF::h_rayleigh_vbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_vbar
Definition: ERF.H:729
+
ERF::h_rayleigh_vbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_vbar
Definition: ERF.H:734
ERF::SFS_diss_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_diss_lev
Definition: ERF.H:551
ERF::fixed_dt
static amrex::Real fixed_dt
Definition: ERF.H:620
ERF::rU_old
amrex::Vector< amrex::MultiFab > rU_old
Definition: ERF.H:521
-
ERF::sum_per
static amrex::Real sum_per
Definition: ERF.H:683
+
ERF::sum_per
static amrex::Real sum_per
Definition: ERF.H:688
ERF::t_old
amrex::Vector< amrex::Real > t_old
Definition: ERF.H:504
ERF::plot_int_2
int plot_int_2
Definition: ERF.H:632
-
ERF::NumSampleLines
AMREX_FORCE_INLINE int NumSampleLines() noexcept
Definition: ERF.H:887
+
ERF::NumSampleLines
AMREX_FORCE_INLINE int NumSampleLines() noexcept
Definition: ERF.H:892
ERF::Theta_prim
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Theta_prim
Definition: ERF.H:518
ERF::init1DArrays
void init1DArrays()
ERF::z_t_rk
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_t_rk
Definition: ERF.H:565
ERF::fill_rhs
void fill_rhs(amrex::MultiFab &rhs_mf, const amrex::MultiFab &state_mf, amrex::Real time, const amrex::Geometry &geom)
ERF::update_arrays
void update_arrays(int lev, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm)
Definition: ERF_make_new_level.cpp:347
-
ERF::previousCPUTimeUsed
static amrex::Real previousCPUTimeUsed
Definition: ERF.H:893
+
ERF::previousCPUTimeUsed
static amrex::Real previousCPUTimeUsed
Definition: ERF.H:898
ERF::plot_var_names_2
amrex::Vector< std::string > plot_var_names_2
Definition: ERF.H:644
ERF::zlevels_stag
amrex::Vector< amrex::Real > zlevels_stag
Definition: ERF.H:554
-
ERF::output_bndry_planes
static int output_bndry_planes
Definition: ERF.H:715
+
ERF::output_bndry_planes
static int output_bndry_planes
Definition: ERF.H:720
ERF::last_plot_file_step_1
int last_plot_file_step_1
Definition: ERF.H:597
ERF::m_bc_extdir_vals
amrex::Array< amrex::Array< amrex::Real, AMREX_SPACEDIM *2 >, AMREX_SPACEDIM+NVAR > m_bc_extdir_vals
Definition: ERF.H:589
-
ERF::nc_bdy_file
static std::string nc_bdy_file
Definition: ERF.H:695
-
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:774
-
ERF::input_bndry_planes
static int input_bndry_planes
Definition: ERF.H:721
-
ERF::AverageDown
void AverageDown()
Definition: ERF.cpp:1187
+
ERF::nc_bdy_file
static std::string nc_bdy_file
Definition: ERF.H:700
+
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:792
+
ERF::input_bndry_planes
static int input_bndry_planes
Definition: ERF.H:726
+
ERF::AverageDown
void AverageDown()
Definition: ERF.cpp:1205
ERF::input_sounding_data
InputSoundingData input_sounding_data
Definition: ERF.H:467
-
ERF::fine_mask
amrex::MultiFab fine_mask
Definition: ERF.H:768
-
ERF::d_havg_density
amrex::Gpu::DeviceVector< amrex::Real > d_havg_density
Definition: ERF.H:745
+
ERF::fine_mask
amrex::MultiFab fine_mask
Definition: ERF.H:773
+
ERF::d_havg_density
amrex::Gpu::DeviceVector< amrex::Real > d_havg_density
Definition: ERF.H:750
ERF::init_from_hse
void init_from_hse(int lev)
Definition: ERF_init_from_hse.cpp:34
-
ERF::d_rayleigh_vbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_vbar
Definition: ERF.H:734
-
ERF::ng_pres_hse
static int ng_pres_hse
Definition: ERF.H:724
-
ERF::wrfbdy_set_width
int wrfbdy_set_width
Definition: ERF.H:697
-
ERF::WriteMultiLevelPlotfileWithTerrain
void WriteMultiLevelPlotfileWithTerrain(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const
Definition: Plotfile.cpp:920
+
ERF::d_rayleigh_vbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_vbar
Definition: ERF.H:739
+
ERF::ng_pres_hse
static int ng_pres_hse
Definition: ERF.H:729
+
ERF::wrfbdy_set_width
int wrfbdy_set_width
Definition: ERF.H:702
+
ERF::WriteMultiLevelPlotfileWithTerrain
void WriteMultiLevelPlotfileWithTerrain(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const
Definition: Plotfile.cpp:937
ERF::domain_bcs_type_d
amrex::Gpu::DeviceVector< amrex::BCRec > domain_bcs_type_d
Definition: ERF.H:583
ERF::plot_int_1
int plot_int_1
Definition: ERF.H:631
ERF::restart_chkfile
std::string restart_chkfile
Definition: ERF.H:612
-
ERF::sampleptlogname
amrex::Vector< std::string > sampleptlogname
Definition: ERF.H:961
+
ERF::sampleptlogname
amrex::Vector< std::string > sampleptlogname
Definition: ERF.H:966
ERF::update_terrain_arrays
void update_terrain_arrays(int lev, amrex::Real time)
Definition: ERF_make_new_level.cpp:408
-
ERF::SamplePoint
amrex::IntVect & SamplePoint(int i)
Definition: ERF.H:867
+
ERF::SamplePoint
amrex::IntVect & SamplePoint(int i)
Definition: ERF.H:872
ERF::InitializeLevelFromData
void InitializeLevelFromData(int lev, const amrex::MultiFab &initial_data)
-
ERF::d_rayleigh_tau
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_tau
Definition: ERF.H:732
+
ERF::d_rayleigh_tau
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_tau
Definition: ERF.H:737
ERF::sum_integrated_quantities
void sum_integrated_quantities(amrex::Real time)
Definition: ERF_WriteScalarProfiles.cpp:14
-
ERF::datalogname
amrex::Vector< std::string > datalogname
Definition: ERF.H:958
+
ERF::datalogname
amrex::Vector< std::string > datalogname
Definition: ERF.H:963
ERF::initHSE
void initHSE()
Initialize HSE.
Definition: ERF_init1d.cpp:141
ERF::z_phys_nd
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd
Definition: ERF.H:555
-
ERF::MakeDiagnosticAverage
void MakeDiagnosticAverage(amrex::Vector< amrex::Real > &h_havg, amrex::MultiFab &S, int n)
Definition: ERF.cpp:1139
-
ERF::use_tracer_particles
static bool use_tracer_particles
Definition: ERF.H:676
-
ERF::h_havg_temperature
amrex::Vector< amrex::Real > h_havg_temperature
Definition: ERF.H:739
-
ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:960
+
ERF::MakeDiagnosticAverage
void MakeDiagnosticAverage(amrex::Vector< amrex::Real > &h_havg, amrex::MultiFab &S, int n)
Definition: ERF.cpp:1157
+
ERF::use_tracer_particles
static bool use_tracer_particles
Definition: ERF.H:681
+
ERF::h_havg_temperature
amrex::Vector< amrex::Real > h_havg_temperature
Definition: ERF.H:744
+
ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:965
ERF::advance_dycore
void advance_dycore(int level, amrex::MultiFab &cons_old, amrex::MultiFab &cons_new, amrex::MultiFab &xvel_old, amrex::MultiFab &yvel_old, amrex::MultiFab &zvel_old, amrex::MultiFab &xvel_new, amrex::MultiFab &yvel_new, amrex::MultiFab &zvel_new, amrex::MultiFab &xmom_old, amrex::MultiFab &ymom_old, amrex::MultiFab &zmom_old, amrex::MultiFab &xmom_new, amrex::MultiFab &ymom_new, amrex::MultiFab &zmom_new, amrex::MultiFab &xmom_crse, amrex::MultiFab &ymom_crse, amrex::MultiFab &zmom_crse, amrex::MultiFab &source, amrex::MultiFab &buoyancy, amrex::Geometry fine_geom, amrex::Real dt, amrex::Real time, amrex::InterpFaceRegister *ifr)
Definition: ERF_advance_dycore.cpp:46
-
ERF::nc_init_file
static amrex::Vector< amrex::Vector< std::string > > nc_init_file
Definition: ERF.H:692
+
ERF::nc_init_file
static amrex::Vector< amrex::Vector< std::string > > nc_init_file
Definition: ERF.H:697
ERF::detJ_cc_src
amrex::Vector< std::unique_ptr< amrex::MultiFab > > detJ_cc_src
Definition: ERF.H:560
-
ERF::d_havg_pressure
amrex::Gpu::DeviceVector< amrex::Real > d_havg_pressure
Definition: ERF.H:747
+
ERF::d_havg_pressure
amrex::Gpu::DeviceVector< amrex::Real > d_havg_pressure
Definition: ERF.H:752
ERF::SmnSmn_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SmnSmn_lev
Definition: ERF.H:547
ERF::derived_names
const amrex::Vector< std::string > derived_names
Definition: ERF.H:654
-
ERF::column_per
static amrex::Real column_per
Definition: ERF.H:709
+
ERF::column_per
static amrex::Real column_per
Definition: ERF.H:714
ERF::start_time
amrex::Real start_time
Definition: ERF.H:608
ERF::sample_points
void sample_points(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &mf)
Definition: ERF_WriteScalarProfiles.cpp:129
-
ERF::DataLog
AMREX_FORCE_INLINE std::ostream & DataLog(int i)
Definition: ERF.H:826
+
ERF::DataLog
AMREX_FORCE_INLINE std::ostream & DataLog(int i)
Definition: ERF.H:831
ERF::writeJobInfo
void writeJobInfo(const std::string &dir) const
Definition: writeJobInfo.cpp:7
ERF::init_shrink
static amrex::Real init_shrink
Definition: ERF.H:616
ERF::fixed_fast_dt
static amrex::Real fixed_fast_dt
Definition: ERF.H:621
ERF::nsubsteps
amrex::Vector< int > nsubsteps
Definition: ERF.H:500
ERF::rW_new
amrex::Vector< amrex::MultiFab > rW_new
Definition: ERF.H:526
-
ERF::m_w2d
std::unique_ptr< WriteBndryPlanes > m_w2d
Definition: ERF.H:755
+
ERF::m_w2d
std::unique_ptr< WriteBndryPlanes > m_w2d
Definition: ERF.H:760
ERF::plot_file_1
std::string plot_file_1
Definition: ERF.H:629
-
ERF::SampleLineLog
AMREX_FORCE_INLINE std::ostream & SampleLineLog(int i)
Definition: ERF.H:854
+
ERF::SampleLineLog
AMREX_FORCE_INLINE std::ostream & SampleLineLog(int i)
Definition: ERF.H:859
ERF::Tau32_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau32_lev
Definition: ERF.H:545
-
ERF::SamplePointLogName
std::string SamplePointLogName(int i) const noexcept
The filename of the ith sampleptlog file.
Definition: ERF.H:972
+
ERF::SamplePointLogName
std::string SamplePointLogName(int i) const noexcept
The filename of the ith sampleptlog file.
Definition: ERF.H:977
ERF::refinement_criteria_setup
void refinement_criteria_setup()
Definition: ERF_Tagging.cpp:60
-
ERF::bndry_output_planes_interval
static int bndry_output_planes_interval
Definition: ERF.H:716
+
ERF::bndry_output_planes_interval
static int bndry_output_planes_interval
Definition: ERF.H:721
ERF::RemakeLevel
void RemakeLevel(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:249
ERF::GotoNextLine
static void GotoNextLine(std::istream &is)
Definition: Checkpoint.cpp:13
ERF::MakeNewLevelFromScratch
void MakeNewLevelFromScratch(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:30
-
ERF::column_loc_x
static amrex::Real column_loc_x
Definition: ERF.H:710
+
ERF::column_loc_x
static amrex::Real column_loc_x
Definition: ERF.H:715
ERF::MakeNewLevelFromCoarse
void MakeNewLevelFromCoarse(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:195
-
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1238
-
ERF::NumDataLogs
AMREX_FORCE_INLINE int NumDataLogs() noexcept
Definition: ERF.H:833
+
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1256
+
ERF::NumDataLogs
AMREX_FORCE_INLINE int NumDataLogs() noexcept
Definition: ERF.H:838
ERF::rW_old
amrex::Vector< amrex::MultiFab > rW_old
Definition: ERF.H:525
-
ERF::bndry_output_planes_start_time
static amrex::Real bndry_output_planes_start_time
Definition: ERF.H:718
+
ERF::bndry_output_planes_start_time
static amrex::Real bndry_output_planes_start_time
Definition: ERF.H:723
ERF::ClearLevel
void ClearLevel(int lev) override
Definition: ERF_make_new_level.cpp:465
-
ERF::h_rayleigh_ubar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_ubar
Definition: ERF.H:728
+
ERF::h_rayleigh_ubar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_ubar
Definition: ERF.H:733
ERF::change_max
static amrex::Real change_max
Definition: ERF.H:617
-
ERF::ref_tags
static amrex::Vector< amrex::AMRErrorTag > ref_tags
Definition: ERF.H:762
+
ERF::ref_tags
static amrex::Vector< amrex::AMRErrorTag > ref_tags
Definition: ERF.H:767
ERF::FPr_w
amrex::Vector< ERFFillPatcher > FPr_w
Definition: ERF.H:539
ERF::SFS_hfx2_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_hfx2_lev
Definition: ERF.H:550
ERF::WriteCheckpointFile
void WriteCheckpointFile() const
Definition: Checkpoint.cpp:23
ERF::FillPatch
void FillPatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mf, bool fillset=true)
Definition: ERF_FillPatch.cpp:20
-
ERF::output_1d_column
static int output_1d_column
Definition: ERF.H:707
+
ERF::output_1d_column
static int output_1d_column
Definition: ERF.H:712
ERF::fixed_mri_dt_ratio
static int fixed_mri_dt_ratio
Definition: ERF.H:622
ERF::dt
amrex::Vector< amrex::Real > dt
Definition: ERF.H:505
ERF::is_it_time_for_action
static bool is_it_time_for_action(int nstep, amrex::Real time, amrex::Real dt, int action_interval, amrex::Real action_per)
Definition: ERF_WriteScalarProfiles.cpp:331
@@ -1291,42 +1296,42 @@
ERF::Tau12_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau12_lev
Definition: ERF.H:543
ERF::cf_width
int cf_width
Definition: ERF.H:534
ERF::plot_file_on_restart
int plot_file_on_restart
Definition: ERF.H:601
-
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1213
+
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1231
ERF::post_update
void post_update(amrex::MultiFab &state_mf, amrex::Real time, const amrex::Geometry &geom)
ERF::num_boxes_at_level
amrex::Vector< int > num_boxes_at_level
Definition: ERF.H:495
-
ERF::ng_dens_hse
static int ng_dens_hse
Definition: ERF.H:723
-
ERF::m_r2d
std::unique_ptr< ReadBndryPlanes > m_r2d
Definition: ERF.H:756
+
ERF::ng_dens_hse
static int ng_dens_hse
Definition: ERF.H:728
+
ERF::m_r2d
std::unique_ptr< ReadBndryPlanes > m_r2d
Definition: ERF.H:761
ERF::FillIntermediatePatch
void FillIntermediatePatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mfs, int ng_cons, int ng_vel, bool cons_only, int icomp_cons, int ncomp_cons, bool allow_most_bcs=true)
Definition: ERF_FillPatch.cpp:157
-
ERF::getCPUTime
static amrex::Real getCPUTime()
Definition: ERF.H:896
-
ERF::setRecordSampleLineInfo
void setRecordSampleLineInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:940
+
ERF::getCPUTime
static amrex::Real getCPUTime()
Definition: ERF.H:901
+
ERF::setRecordSampleLineInfo
void setRecordSampleLineInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:945
ERF::detJ_cc_new
amrex::Vector< std::unique_ptr< amrex::MultiFab > > detJ_cc_new
Definition: ERF.H:563
ERF::mapfac_v
amrex::Vector< std::unique_ptr< amrex::MultiFab > > mapfac_v
Definition: ERF.H:569
ERF::cfl
static amrex::Real cfl
Definition: ERF.H:615
ERF::domain_bc_type
amrex::Array< std::string, 2 *AMREX_SPACEDIM > domain_bc_type
Definition: ERF.H:586
ERF::init_uniform
void init_uniform(int lev)
Definition: ERF_init_uniform.cpp:17
-
ERF::ComputeGhostCells
static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &advChoice, bool use_num_diff)
Definition: ERF.H:774
+
ERF::ComputeGhostCells
static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &advChoice, bool use_num_diff)
Definition: ERF.H:779
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mfs)
Definition: ERF_FillPatch.cpp:279
ERF::writeBuildInfo
static void writeBuildInfo(std::ostream &os)
Definition: writeJobInfo.cpp:135
ERF::phys_bc_type
amrex::GpuArray< ERF_BC, AMREX_SPACEDIM *2 > phys_bc_type
Definition: ERF.H:595
ERF::check_file
std::string check_file
Definition: ERF.H:638
-
ERF::plotfile_type
static std::string plotfile_type
Definition: ERF.H:686
-
ERF::samplepoint
amrex::Vector< amrex::IntVect > samplepoint
Definition: ERF.H:962
-
ERF::wrfbdy_width
int wrfbdy_width
Definition: ERF.H:696
+
ERF::plotfile_type
static std::string plotfile_type
Definition: ERF.H:691
+
ERF::samplepoint
amrex::Vector< amrex::IntVect > samplepoint
Definition: ERF.H:967
+
ERF::wrfbdy_width
int wrfbdy_width
Definition: ERF.H:701
ERF::rV_old
amrex::Vector< amrex::MultiFab > rV_old
Definition: ERF.H:523
ERF::Tau11_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau11_lev
Definition: ERF.H:542
ERF::istep
amrex::Vector< int > istep
Definition: ERF.H:499
ERF::derive_upwp
void derive_upwp(amrex::Vector< amrex::Real > &h_havg)
ERF::ReadCheckpointFile
void ReadCheckpointFile()
Definition: Checkpoint.cpp:223
ERF::vars_old
amrex::Vector< amrex::Vector< amrex::MultiFab > > vars_old
Definition: ERF.H:512
-
ERF::d_rayleigh_ubar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_ubar
Definition: ERF.H:733
+
ERF::d_rayleigh_ubar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_ubar
Definition: ERF.H:738
ERF::physbcs
amrex::Vector< std::unique_ptr< ERFPhysBCFunct > > physbcs
Definition: ERF.H:515
-
ERF::init_type
static std::string init_type
Definition: ERF.H:689
-
ERF::SamplePointLog
AMREX_FORCE_INLINE std::ostream & SamplePointLog(int i)
Definition: ERF.H:840
-
ERF::setRecordSamplePointInfo
void setRecordSamplePointInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:923
-
ERF::column_interval
static int column_interval
Definition: ERF.H:708
+
ERF::init_type
static std::string init_type
Definition: ERF.H:694
+
ERF::SamplePointLog
AMREX_FORCE_INLINE std::ostream & SamplePointLog(int i)
Definition: ERF.H:845
+
ERF::setRecordSamplePointInfo
void setRecordSamplePointInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:928
+
ERF::column_interval
static int column_interval
Definition: ERF.H:713
ERF::Tau22_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau22_lev
Definition: ERF.H:542
ERF::sample_lines
void sample_lines(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &mf)
Definition: ERF_WriteScalarProfiles.cpp:167
-
ERF::get_flux_reg
AMREX_FORCE_INLINE amrex::FluxRegister & get_flux_reg(int lev)
Definition: ERF.H:819
+
ERF::get_flux_reg
AMREX_FORCE_INLINE amrex::FluxRegister & get_flux_reg(int lev)
Definition: ERF.H:824
ERF::cons_names
const amrex::Vector< std::string > cons_names
Definition: ERF.H:645
ERF::timeStep
void timeStep(int lev, amrex::Real time, int iteration)
Definition: ERF_TimeStep.cpp:17
Microphysics
Definition: Microphysics.H:52
diff --git a/ERF__make__buoyancy_8cpp.html b/ERF__make__buoyancy_8cpp.html index 6da353c844..d6448605dc 100644 --- a/ERF__make__buoyancy_8cpp.html +++ b/ERF__make__buoyancy_8cpp.html @@ -531,9 +531,9 @@

PrimTheta_comp
#define PrimTheta_comp
Definition: IndexDefines.H:30
PlaneAverage
Definition: PlaneAverage.H:13
IntVar::cons
@ cons
Definition: IndexDefines.H:182
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::buoyancy_type
int buoyancy_type
Definition: DataStruct.H:260
-
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:307
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::buoyancy_type
int buoyancy_type
Definition: DataStruct.H:266
+
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:313
Here is the call graph for this function:
diff --git a/ERF__slow__rhs__inc_8cpp.html b/ERF__slow__rhs__inc_8cpp.html index 408b5f121f..7c9ec02b40 100644 --- a/ERF__slow__rhs__inc_8cpp.html +++ b/ERF__slow__rhs__inc_8cpp.html @@ -1226,23 +1226,23 @@

Vars::yvel
@ yvel
Definition: IndexDefines.H:82

DiffChoice
Definition: DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: DiffStruct.H:76
-
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:255
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:271
-
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:295
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:269
-
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:266
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:242
-
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:296
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:305
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:268
-
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:297
-
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:304
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:301
-
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:265
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:300
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:244
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:270
+
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:261
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:277
+
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:301
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:275
+
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:272
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:248
+
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:302
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:311
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:274
+
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:303
+
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:310
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:307
+
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:271
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:306
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:250
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:276
TurbChoice
Definition: TurbStruct.H:16
TurbChoice::pbl_type
PBLType pbl_type
Definition: TurbStruct.H:272
TurbChoice::les_type
LESType les_type
Definition: TurbStruct.H:249
diff --git a/ERF__slow__rhs__post_8cpp.html b/ERF__slow__rhs__post_8cpp.html index 4e7278b85c..d5e8ef0984 100644 --- a/ERF__slow__rhs__post_8cpp.html +++ b/ERF__slow__rhs__post_8cpp.html @@ -728,88 +728,90 @@

441  // NOTE: we don't include additional source terms when terrain is moving
442  Real temp_val = detJ_arr(i,j,k) * old_cons(i,j,k,n) + dt * detJ_arr(i,j,k) * cell_rhs(i,j,k,n);
443  cur_cons(i,j,k,n) = temp_val / detJ_new_arr(i,j,k);
-
444 #ifndef AMREX_USE_GPU
-
445  if (cur_cons(i,j,k,n) < Real(0.)) {
-
446  amrex::AllPrint() << "MAKING NEGATIVE QKE " << IntVect(i,j,k) << " NEW / OLD " <<
-
447  cur_cons(i,j,k,n) << " " << old_cons(i,j,k,n) << std::endl;
-
448  amrex::Abort();
-
449  }
-
450 #endif
-
451  });
-
452  }
-
453  } else {
-
454  auto const& src_arr = source.const_array(mfi);
-
455  start_comp = RhoScalar_comp;
-
456  num_comp = S_data[IntVar::cons].nComp() - start_comp;
-
457  ParallelFor(tbx, num_comp,
-
458  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
-
459  const int n = start_comp + nn;
-
460  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
-
461  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
-
462  });
-
463 
-
464  if (l_use_deardorff) {
-
465  start_comp = RhoKE_comp;
-
466  num_comp = 1;
-
467  amrex::Real eps = std::numeric_limits<Real>::epsilon();
-
468  ParallelFor(tbx, num_comp,
-
469  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
-
470  const int n = start_comp + nn;
-
471  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
-
472  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
-
473  // make sure rho*e is positive
-
474  if (cur_cons(i,j,k,n) < eps) cur_cons(i,j,k,n) = eps;
-
475  });
-
476  }
-
477  if (l_use_QKE) {
-
478  start_comp = RhoQKE_comp;
-
479  num_comp = 1;
-
480  ParallelFor(tbx, num_comp,
-
481  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
-
482  const int n = start_comp + nn;
-
483  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
-
484  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
-
485 #ifndef AMREX_USE_GPU
-
486  if (cur_cons(i,j,k,n) < Real(0.)) {
-
487  amrex::AllPrint() << "MAKING NEGATIVE QKE " << IntVect(i,j,k) << " NEW / OLD " <<
-
488  cur_cons(i,j,k,n) << " " << old_cons(i,j,k,n) << std::endl;
-
489  amrex::Abort();
-
490  }
-
491 #endif
-
492  });
-
493  }
-
494  }
-
495  } // end profile
-
496 
-
497  {
-
498  BL_PROFILE("rhs_post_9");
-
499  // This updates all the conserved variables (not just the "slow" ones)
-
500  int num_comp_all = S_data[IntVar::cons].nComp();
-
501  ParallelFor(tbx, num_comp_all,
-
502  [=] AMREX_GPU_DEVICE (int i, int j, int k, int n) noexcept {
-
503  new_cons(i,j,k,n) = cur_cons(i,j,k,n);
-
504  });
-
505  } // end profile
-
506 
-
507  Box gtbx = mfi.tilebox(IntVect(1,0,0),S_old[IntVar::xmom].nGrowVect());
-
508  Box gtby = mfi.tilebox(IntVect(0,1,0),S_old[IntVar::ymom].nGrowVect());
-
509  Box gtbz = mfi.tilebox(IntVect(0,0,1),S_old[IntVar::zmom].nGrowVect());
-
510 
-
511  {
-
512  BL_PROFILE("rhs_post_10()");
-
513  ParallelFor(gtbx, gtby, gtbz,
-
514  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
-
515  new_xmom(i,j,k) = cur_xmom(i,j,k);
-
516  },
-
517  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
-
518  new_ymom(i,j,k) = cur_ymom(i,j,k);
-
519  },
-
520  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
-
521  new_zmom(i,j,k) = cur_zmom(i,j,k);
-
522  });
-
523  } // end profile
-
524  } // mfi
-
525 }
+
444  cur_cons(i,j,k,n) = amrex::max(cur_cons(i,j,k,n), 1e-12);
+
445 #if 0
+
446  if (cur_cons(i,j,k,n) < Real(0.)) {
+
447  amrex::AllPrint() << "MAKING NEGATIVE QKE " << IntVect(i,j,k) << " NEW / OLD " <<
+
448  cur_cons(i,j,k,n) << " " << old_cons(i,j,k,n) << std::endl;
+
449  amrex::Abort();
+
450  }
+
451 #endif
+
452  });
+
453  }
+
454  } else {
+
455  auto const& src_arr = source.const_array(mfi);
+
456  start_comp = RhoScalar_comp;
+
457  num_comp = S_data[IntVar::cons].nComp() - start_comp;
+
458  ParallelFor(tbx, num_comp,
+
459  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
+
460  const int n = start_comp + nn;
+
461  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
+
462  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
+
463  });
+
464 
+
465  if (l_use_deardorff) {
+
466  start_comp = RhoKE_comp;
+
467  num_comp = 1;
+
468  amrex::Real eps = std::numeric_limits<Real>::epsilon();
+
469  ParallelFor(tbx, num_comp,
+
470  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
+
471  const int n = start_comp + nn;
+
472  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
+
473  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
+
474  // make sure rho*e is positive
+
475  if (cur_cons(i,j,k,n) < eps) cur_cons(i,j,k,n) = eps;
+
476  });
+
477  }
+
478  if (l_use_QKE) {
+
479  start_comp = RhoQKE_comp;
+
480  num_comp = 1;
+
481  ParallelFor(tbx, num_comp,
+
482  [=] AMREX_GPU_DEVICE (int i, int j, int k, int nn) noexcept {
+
483  const int n = start_comp + nn;
+
484  cell_rhs(i,j,k,n) += src_arr(i,j,k,n);
+
485  cur_cons(i,j,k,n) = old_cons(i,j,k,n) + dt * cell_rhs(i,j,k,n);
+
486  cur_cons(i,j,k,n) = amrex::max(cur_cons(i,j,k,n), 1e-12);
+
487 #if 0
+
488  if (cur_cons(i,j,k,n) < Real(0.)) {
+
489  amrex::AllPrint() << "MAKING NEGATIVE QKE " << IntVect(i,j,k) << " NEW / OLD " <<
+
490  cur_cons(i,j,k,n) << " " << old_cons(i,j,k,n) << std::endl;
+
491  amrex::Abort();
+
492  }
+
493 #endif
+
494  });
+
495  }
+
496  }
+
497  } // end profile
+
498 
+
499  {
+
500  BL_PROFILE("rhs_post_9");
+
501  // This updates all the conserved variables (not just the "slow" ones)
+
502  int num_comp_all = S_data[IntVar::cons].nComp();
+
503  ParallelFor(tbx, num_comp_all,
+
504  [=] AMREX_GPU_DEVICE (int i, int j, int k, int n) noexcept {
+
505  new_cons(i,j,k,n) = cur_cons(i,j,k,n);
+
506  });
+
507  } // end profile
+
508 
+
509  Box gtbx = mfi.tilebox(IntVect(1,0,0),S_old[IntVar::xmom].nGrowVect());
+
510  Box gtby = mfi.tilebox(IntVect(0,1,0),S_old[IntVar::ymom].nGrowVect());
+
511  Box gtbz = mfi.tilebox(IntVect(0,0,1),S_old[IntVar::zmom].nGrowVect());
+
512 
+
513  {
+
514  BL_PROFILE("rhs_post_10()");
+
515  ParallelFor(gtbx, gtby, gtbz,
+
516  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
+
517  new_xmom(i,j,k) = cur_xmom(i,j,k);
+
518  },
+
519  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
+
520  new_ymom(i,j,k) = cur_ymom(i,j,k);
+
521  },
+
522  [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
+
523  new_zmom(i,j,k) = cur_zmom(i,j,k);
+
524  });
+
525  } // end profile
+
526  } // mfi
+
527 }
AdvectionSrcForScalars
void AdvectionSrcForScalars(const amrex::Box &bx, const int icomp, const int ncomp, const amrex::Array4< const amrex::Real > &avg_xmom, const amrex::Array4< const amrex::Real > &avg_ymom, const amrex::Array4< const amrex::Real > &avg_zmom, const amrex::Array4< const amrex::Real > &cell_prim, const amrex::Array4< amrex::Real > &src, const amrex::Array4< const amrex::Real > &detJ, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSize, const amrex::Array4< const amrex::Real > &mf_m, const AdvType horiz_adv_type, const AdvType vert_adv_type, const int use_terrain)
EfficientAdvType
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE AdvType EfficientAdvType(int nrk, AdvType adv_type)
Definition: Advection.H:66
@@ -841,15 +843,15 @@

AdvChoice::dryscal_vert_adv_type
AdvType dryscal_vert_adv_type
Definition: AdvStruct.H:216
DiffChoice
Definition: DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: DiffStruct.H:76
-
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:255
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:242
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:256
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:301
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:300
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:244
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:241
-
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:251
+
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:261
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:248
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:262
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:307
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:306
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:250
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:247
+
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:257
TurbChoice
Definition: TurbStruct.H:16
TurbChoice::advect_QKE
bool advect_QKE
Definition: TurbStruct.H:287
TurbChoice::pbl_type
PBLType pbl_type
Definition: TurbStruct.H:272
diff --git a/ERF__slow__rhs__pre_8cpp.html b/ERF__slow__rhs__pre_8cpp.html index c5a23b2543..95f0ff9551 100644 --- a/ERF__slow__rhs__pre_8cpp.html +++ b/ERF__slow__rhs__pre_8cpp.html @@ -1507,26 +1507,26 @@

DiffChoice
Definition: DiffStruct.H:19
DiffChoice::dynamicViscosity
amrex::Real dynamicViscosity
Definition: DiffStruct.H:88
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: DiffStruct.H:76
-
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:255
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:271
-
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:295
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:269
-
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:266
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:242
-
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:296
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:305
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:268
-
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:297
-
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:304
-
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:256
-
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:301
-
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:265
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:300
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:244
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:241
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:270
-
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: DataStruct.H:243
+
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:261
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:277
+
SolverChoice::coriolis_factor
amrex::Real coriolis_factor
Definition: DataStruct.H:301
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:275
+
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:272
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:248
+
SolverChoice::cosphi
amrex::Real cosphi
Definition: DataStruct.H:302
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::abl_geo_forcing
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
Definition: DataStruct.H:311
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:274
+
SolverChoice::sinphi
amrex::Real sinphi
Definition: DataStruct.H:303
+
SolverChoice::abl_pressure_grad
amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
Definition: DataStruct.H:310
+
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:262
+
SolverChoice::NumDiffCoeff
amrex::Real NumDiffCoeff
Definition: DataStruct.H:307
+
SolverChoice::use_coriolis
bool use_coriolis
Definition: DataStruct.H:271
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:306
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:250
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:247
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:276
+
SolverChoice::spongeChoice
SpongeChoice spongeChoice
Definition: DataStruct.H:249
TurbChoice
Definition: TurbStruct.H:16
TurbChoice::pbl_type
PBLType pbl_type
Definition: TurbStruct.H:272
TurbChoice::les_type
LESType les_type
Definition: TurbStruct.H:249
diff --git a/InputSoundingData_8H_source.html b/InputSoundingData_8H_source.html index 91e2d37ae0..39e9207295 100644 --- a/InputSoundingData_8H_source.html +++ b/InputSoundingData_8H_source.html @@ -217,150 +217,170 @@
129  * density and pressure, then back down to get the dry density and
130  * pressure.
131  *
-
132  * This deviates from that code slightly because we calculate the
-
133  * correct moist theta, equal to virtual potential temperature, and
-
134  * also remove the factor (1+qv) for consistency with the the surface
-
135  * density.
-
136  */
-
137  const int maxiter = 10;
-
138  const int Ninp = size();
-
139  pm_integ.resize(Ninp);
-
140  pd_integ.resize(Ninp);
-
141  rhom_integ.resize(Ninp);
-
142  rhod_integ.resize(Ninp);
-
143 
-
144  // evaluate surface quantities (k=0)
-
145  amrex::Real thm_surf = theta_ref_inp_sound *
-
146  (1 + (R_v/R_d-1) * qv_ref_inp_sound); // _moist_ theta == virtual potential temperature
-
147  pm_integ[0] = press_ref_inp_sound; // _total_ pressure (incl moisture)
-
148  rhom_integ[0] = 1 / (
-
149  R_d/p_0 * thm_surf * std::pow(pm_integ[0]/p_0, -iGamma)); // density of _moist_ air
-
150 
-
151  amrex::Print() << "ideal sounding init: surface density of moist air = "
-
152  << rhom_integ[0] << " kg/m^3" << std::endl;
-
153 
-
154  // Note:
-
155  // p_dry = rho_d R_d T
-
156  // p_tot = rho_m R_d T_v
-
157  // = rho_d(1 + q_v) R_d T_v
-
158 
-
159  // integrate from surface to domain top
-
160  amrex::Real qvf, dz;
-
161  for (int k=1; k < size(); ++k)
-
162  {
-
163  qvf = 1 + (R_v/R_d-1) * qv_inp_sound[k];
-
164  dz = z_inp_sound[k] - z_inp_sound[k-1];
-
165  rhom_integ[k] = rhom_integ[k-1]; // guess
-
166  for (int it=0; it < maxiter; ++it)
-
167  {
-
168  pm_integ[k] = pm_integ[k-1]
-
169  - 0.5*dz*(rhom_integ[k] + rhom_integ[k-1])*CONST_GRAV;
-
170  AMREX_ALWAYS_ASSERT(pm_integ[k] > 0);
-
171  rhom_integ[k] = 1 / (
-
172  R_d/p_0 * theta_inp_sound[k]*qvf * std::pow(pm_integ[k]/p_0, -iGamma));
-
173  }
-
174  }
-
175 
-
176  // now, integrate from the top of the sounding (where it's dry) back
-
177  // down to get the dry air column properties
-
178  pd_integ[Ninp-1] = pm_integ[Ninp-1];
-
179  rhod_integ[Ninp-1] = 1 / (
-
180  R_d/p_0 * theta_inp_sound[Ninp-1] * std::pow(pd_integ[Ninp-1]/p_0, -iGamma));
-
181  amrex::Print() << "z p_d rho_d theta U V" << std::endl;
-
182  amrex::Print() << z_inp_sound[Ninp-1]
-
183  << " " << pd_integ[Ninp-1]
-
184  << " " << rhod_integ[Ninp-1]
-
185  << " " << theta_inp_sound[Ninp-1]
-
186  << " " << U_inp_sound[Ninp-1]
-
187  << " " << V_inp_sound[Ninp-1]
-
188  << std::endl;
-
189  for (int k=Ninp-2; k >= 0; --k)
-
190  {
-
191  dz = z_inp_sound[k+1] - z_inp_sound[k];
-
192  rhod_integ[k] = rhod_integ[k+1]; // guess
-
193  for (int it=0; it < maxiter; ++it)
-
194  {
-
195  pd_integ[k] = pd_integ[k+1]
-
196  + 0.5*dz*(rhod_integ[k] + rhod_integ[k+1])*CONST_GRAV;
-
197  AMREX_ALWAYS_ASSERT(pd_integ[k] > 0);
-
198  rhod_integ[k] = 1 / (
-
199  R_d/p_0 * theta_inp_sound[k] * std::pow(pd_integ[k]/p_0, -iGamma));
-
200  }
-
201  amrex::Print() << z_inp_sound[k]
-
202  << " " << pd_integ[k]
-
203  << " " << rhod_integ[k]
-
204  << " " << theta_inp_sound[k]
-
205  << " " << U_inp_sound[k]
-
206  << " " << V_inp_sound[k]
-
207  << std::endl;
-
208  }
-
209  // Note: at this point, the surface pressure, density of the dry air
-
210  // column is stored in pd_integ[0], rhod_integ[0]
-
211 
-
212  // update
-
213  host_to_device();
-
214  }
-
215 
-
216  void host_to_device()
-
217  {
-
218  z_inp_sound_d.resize(size());
-
219  theta_inp_sound_d.resize(size());
-
220  qv_inp_sound_d.resize(size());
-
221  U_inp_sound_d.resize(size());
-
222  V_inp_sound_d.resize(size());
-
223 
-
224  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
225  z_inp_sound.begin(), z_inp_sound.end(),
-
226  z_inp_sound_d.begin());
-
227  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
228  theta_inp_sound.begin(), theta_inp_sound.end(),
-
229  theta_inp_sound_d.begin());
-
230  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
231  qv_inp_sound.begin(), qv_inp_sound.end(),
-
232  qv_inp_sound_d.begin());
-
233  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
234  U_inp_sound.begin(), U_inp_sound.end(),
-
235  U_inp_sound_d.begin());
-
236  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
237  V_inp_sound.begin(), V_inp_sound.end(),
-
238  V_inp_sound_d.begin());
-
239 
-
240  if (rhod_integ.size() > 0)
-
241  {
-
242  //amrex::Print() << "Copying rho_d, p_d to device" << std::endl;
-
243  rho_inp_sound_d.resize(size()+2);
-
244  p_inp_sound_d.resize(size()+2);
-
245  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
246  rhod_integ.begin(), rhod_integ.end(),
-
247  rho_inp_sound_d.begin());
-
248  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
-
249  pd_integ.begin(), pd_integ.end(),
-
250  p_inp_sound_d.begin());
-
251  }
-
252  }
-
253 
-
254  int size() const
-
255  {
-
256  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == theta_inp_sound.size());
-
257  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == qv_inp_sound.size());
-
258  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == U_inp_sound.size());
-
259  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == V_inp_sound.size());
-
260  return z_inp_sound.size();
-
261  }
-
262 
-
263  // Members
-
264  // - read from file
-
265  amrex::Real press_ref_inp_sound, theta_ref_inp_sound, qv_ref_inp_sound; // input
-
266  amrex::Vector<amrex::Real> z_inp_sound, theta_inp_sound, qv_inp_sound, U_inp_sound, V_inp_sound;
-
267  amrex::Gpu::DeviceVector<amrex::Real> z_inp_sound_d, theta_inp_sound_d, qv_inp_sound_d, U_inp_sound_d, V_inp_sound_d;
-
268  // - moist profiles
-
269  amrex::Vector<amrex::Real> pm_integ, rhom_integ; // from integrating up air column
-
270  // - dry profiles
-
271  amrex::Vector<amrex::Real> pd_integ, rhod_integ; // from integrating down air column
-
272  // - to set solution fields
-
273  amrex::Gpu::DeviceVector<amrex::Real> p_inp_sound_d, rho_inp_sound_d;
-
274 };
-
275 #endif
+
132  * This deviates from that code slightly because we calculate a moist
+
133  * theta that is equal to virtual potential temperature, and also
+
134  * remove the factor of (1+qv) for consistency with the surface density.
+
135  */
+
136  const int maxiter = 10;
+
137  const int Ninp = size();
+
138  pm_integ.resize(Ninp);
+
139  pd_integ.resize(Ninp);
+
140  rhom_integ.resize(Ninp);
+
141  rhod_integ.resize(Ninp);
+
142 
+
143  // evaluate surface quantities (k=0)
+
144  amrex::Real thm_surf = theta_ref_inp_sound *
+
145  (1 + (R_v/R_d-1) * qv_ref_inp_sound); // _moist_ theta == virtual potential temperature
+
146  pm_integ[0] = press_ref_inp_sound; // _total_ pressure (incl moisture)
+
147  rhom_integ[0] = 1 / (
+
148  R_d/p_0 * thm_surf * std::pow(pm_integ[0]/p_0, -iGamma)); // density of _moist_ air
+
149 
+
150  amrex::Print() << "ideal sounding init: surface density of moist air = "
+
151  << rhom_integ[0] << " kg/m^3" << std::endl;
+
152 
+
153  // Note:
+
154  // p_dry = rho_d R_d T
+
155  // p_tot = rho_m R_d T_v
+
156  // = rho_d(1 + q_v) R_d T_v
+
157 
+
158  // integrate from surface to domain top
+
159  amrex::Real qvf, dz;
+
160 #if 0
+
161  // In this absence of moisture, this moist profile will match the
+
162  // following dry profile
+
163  amrex::Print() << "z p_m rho_m theta U V" << std::endl;
+
164  amrex::Print() << z_inp_sound[0]
+
165  << " " << pm_integ[0]
+
166  << " " << rhom_integ[0]
+
167  << " " << theta_inp_sound[0]
+
168  << " " << U_inp_sound[0]
+
169  << " " << V_inp_sound[0]
+
170  << std::endl;
+
171 #endif
+
172  for (int k=1; k < size(); ++k)
+
173  {
+
174  qvf = 1 + (R_v/R_d-1) * qv_inp_sound[k];
+
175  dz = z_inp_sound[k] - z_inp_sound[k-1];
+
176  rhom_integ[k] = rhom_integ[k-1]; // guess
+
177  for (int it=0; it < maxiter; ++it)
+
178  {
+
179  pm_integ[k] = pm_integ[k-1]
+
180  - 0.5*dz*(rhom_integ[k] + rhom_integ[k-1])*CONST_GRAV;
+
181  AMREX_ALWAYS_ASSERT(pm_integ[k] > 0);
+
182  rhom_integ[k] = 1 / (
+
183  R_d/p_0 * theta_inp_sound[k]*qvf * std::pow(pm_integ[k]/p_0, -iGamma));
+
184  }
+
185 #if 0
+
186  amrex::Print() << z_inp_sound[k]
+
187  << " " << pm_integ[k]
+
188  << " " << rhom_integ[k]
+
189  << " " << theta_inp_sound[k]
+
190  << " " << U_inp_sound[k]
+
191  << " " << V_inp_sound[k]
+
192  << std::endl;
+
193 #endif
+
194  }
+
195 
+
196  // now, integrate from the top of the sounding (where it's assumed dry) back
+
197  // down to get the dry air column properties
+
198  pd_integ[Ninp-1] = pm_integ[Ninp-1];
+
199  rhod_integ[Ninp-1] = 1 / (
+
200  R_d/p_0 * theta_inp_sound[Ninp-1] * std::pow(pd_integ[Ninp-1]/p_0, -iGamma));
+
201  amrex::Print() << "z p_d rho_d theta U V" << std::endl;
+
202  amrex::Print() << z_inp_sound[Ninp-1]
+
203  << " " << pd_integ[Ninp-1]
+
204  << " " << rhod_integ[Ninp-1]
+
205  << " " << theta_inp_sound[Ninp-1]
+
206  << " " << U_inp_sound[Ninp-1]
+
207  << " " << V_inp_sound[Ninp-1]
+
208  << std::endl;
+
209  for (int k=Ninp-2; k >= 0; --k)
+
210  {
+
211  dz = z_inp_sound[k+1] - z_inp_sound[k];
+
212  rhod_integ[k] = rhod_integ[k+1]; // guess
+
213  for (int it=0; it < maxiter; ++it)
+
214  {
+
215  pd_integ[k] = pd_integ[k+1]
+
216  + 0.5*dz*(rhod_integ[k] + rhod_integ[k+1])*CONST_GRAV;
+
217  AMREX_ALWAYS_ASSERT(pd_integ[k] > 0);
+
218  rhod_integ[k] = 1 / (
+
219  R_d/p_0 * theta_inp_sound[k] * std::pow(pd_integ[k]/p_0, -iGamma));
+
220  }
+
221  amrex::Print() << z_inp_sound[k]
+
222  << " " << pd_integ[k]
+
223  << " " << rhod_integ[k]
+
224  << " " << theta_inp_sound[k]
+
225  << " " << U_inp_sound[k]
+
226  << " " << V_inp_sound[k]
+
227  << std::endl;
+
228  }
+
229  // Note: at this point, the surface pressure, density of the dry air
+
230  // column is stored in pd_integ[0], rhod_integ[0]
+
231 
+
232  // update
+
233  host_to_device();
+
234  }
+
235 
+
236  void host_to_device()
+
237  {
+
238  z_inp_sound_d.resize(size());
+
239  theta_inp_sound_d.resize(size());
+
240  qv_inp_sound_d.resize(size());
+
241  U_inp_sound_d.resize(size());
+
242  V_inp_sound_d.resize(size());
+
243 
+
244  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
245  z_inp_sound.begin(), z_inp_sound.end(),
+
246  z_inp_sound_d.begin());
+
247  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
248  theta_inp_sound.begin(), theta_inp_sound.end(),
+
249  theta_inp_sound_d.begin());
+
250  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
251  qv_inp_sound.begin(), qv_inp_sound.end(),
+
252  qv_inp_sound_d.begin());
+
253  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
254  U_inp_sound.begin(), U_inp_sound.end(),
+
255  U_inp_sound_d.begin());
+
256  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
257  V_inp_sound.begin(), V_inp_sound.end(),
+
258  V_inp_sound_d.begin());
+
259 
+
260  if (rhod_integ.size() > 0)
+
261  {
+
262  //amrex::Print() << "Copying rho_d, p_d to device" << std::endl;
+
263  rho_inp_sound_d.resize(size()+2);
+
264  p_inp_sound_d.resize(size()+2);
+
265  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
266  rhod_integ.begin(), rhod_integ.end(),
+
267  rho_inp_sound_d.begin());
+
268  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
+
269  pd_integ.begin(), pd_integ.end(),
+
270  p_inp_sound_d.begin());
+
271  }
+
272  }
+
273 
+
274  int size() const
+
275  {
+
276  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == theta_inp_sound.size());
+
277  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == qv_inp_sound.size());
+
278  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == U_inp_sound.size());
+
279  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == V_inp_sound.size());
+
280  return z_inp_sound.size();
+
281  }
+
282 
+
283  // Members
+
284  // - read from file
+
285  amrex::Real press_ref_inp_sound, theta_ref_inp_sound, qv_ref_inp_sound; // input
+
286  amrex::Vector<amrex::Real> z_inp_sound, theta_inp_sound, qv_inp_sound, U_inp_sound, V_inp_sound;
+
287  amrex::Gpu::DeviceVector<amrex::Real> z_inp_sound_d, theta_inp_sound_d, qv_inp_sound_d, U_inp_sound_d, V_inp_sound_d;
+
288  // - moist profiles
+
289  amrex::Vector<amrex::Real> pm_integ, rhom_integ; // from integrating up air column
+
290  // - dry profiles
+
291  amrex::Vector<amrex::Real> pd_integ, rhod_integ; // from integrating down air column
+
292  // - to set solution fields
+
293  amrex::Gpu::DeviceVector<amrex::Real> p_inp_sound_d, rho_inp_sound_d;
+
294 };
+
295 #endif
ERF_Constants.H
R_v
constexpr amrex::Real R_v
Definition: ERF_Constants.H:11
@@ -375,29 +395,29 @@
WRFBdyVars::V
@ V
Definition: IndexDefines.H:68
WRFBdyVars::U
@ U
Definition: IndexDefines.H:67
InputSoundingData
Definition: InputSoundingData.H:20
-
InputSoundingData::press_ref_inp_sound
amrex::Real press_ref_inp_sound
Definition: InputSoundingData.H:265
-
InputSoundingData::z_inp_sound
amrex::Vector< amrex::Real > z_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::p_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > p_inp_sound_d
Definition: InputSoundingData.H:273
-
InputSoundingData::theta_ref_inp_sound
amrex::Real theta_ref_inp_sound
Definition: InputSoundingData.H:265
-
InputSoundingData::V_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > V_inp_sound_d
Definition: InputSoundingData.H:267
-
InputSoundingData::pm_integ
amrex::Vector< amrex::Real > pm_integ
Definition: InputSoundingData.H:269
-
InputSoundingData::rhom_integ
amrex::Vector< amrex::Real > rhom_integ
Definition: InputSoundingData.H:269
-
InputSoundingData::rhod_integ
amrex::Vector< amrex::Real > rhod_integ
Definition: InputSoundingData.H:271
-
InputSoundingData::rho_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > rho_inp_sound_d
Definition: InputSoundingData.H:273
-
InputSoundingData::qv_inp_sound
amrex::Vector< amrex::Real > qv_inp_sound
Definition: InputSoundingData.H:266
+
InputSoundingData::press_ref_inp_sound
amrex::Real press_ref_inp_sound
Definition: InputSoundingData.H:285
+
InputSoundingData::z_inp_sound
amrex::Vector< amrex::Real > z_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::p_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > p_inp_sound_d
Definition: InputSoundingData.H:293
+
InputSoundingData::theta_ref_inp_sound
amrex::Real theta_ref_inp_sound
Definition: InputSoundingData.H:285
+
InputSoundingData::V_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > V_inp_sound_d
Definition: InputSoundingData.H:287
+
InputSoundingData::pm_integ
amrex::Vector< amrex::Real > pm_integ
Definition: InputSoundingData.H:289
+
InputSoundingData::rhom_integ
amrex::Vector< amrex::Real > rhom_integ
Definition: InputSoundingData.H:289
+
InputSoundingData::rhod_integ
amrex::Vector< amrex::Real > rhod_integ
Definition: InputSoundingData.H:291
+
InputSoundingData::rho_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > rho_inp_sound_d
Definition: InputSoundingData.H:293
+
InputSoundingData::qv_inp_sound
amrex::Vector< amrex::Real > qv_inp_sound
Definition: InputSoundingData.H:286
InputSoundingData::read_from_file
void read_from_file(const std::string input_sounding_file, amrex::Geometry const &geom)
Definition: InputSoundingData.H:24
-
InputSoundingData::U_inp_sound
amrex::Vector< amrex::Real > U_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::V_inp_sound
amrex::Vector< amrex::Real > V_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::qv_ref_inp_sound
amrex::Real qv_ref_inp_sound
Definition: InputSoundingData.H:265
-
InputSoundingData::U_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > U_inp_sound_d
Definition: InputSoundingData.H:267
-
InputSoundingData::host_to_device
void host_to_device()
Definition: InputSoundingData.H:216
-
InputSoundingData::pd_integ
amrex::Vector< amrex::Real > pd_integ
Definition: InputSoundingData.H:271
-
InputSoundingData::z_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > z_inp_sound_d
Definition: InputSoundingData.H:267
-
InputSoundingData::qv_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > qv_inp_sound_d
Definition: InputSoundingData.H:267
-
InputSoundingData::theta_inp_sound
amrex::Vector< amrex::Real > theta_inp_sound
Definition: InputSoundingData.H:266
+
InputSoundingData::U_inp_sound
amrex::Vector< amrex::Real > U_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::V_inp_sound
amrex::Vector< amrex::Real > V_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::qv_ref_inp_sound
amrex::Real qv_ref_inp_sound
Definition: InputSoundingData.H:285
+
InputSoundingData::U_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > U_inp_sound_d
Definition: InputSoundingData.H:287
+
InputSoundingData::host_to_device
void host_to_device()
Definition: InputSoundingData.H:236
+
InputSoundingData::pd_integ
amrex::Vector< amrex::Real > pd_integ
Definition: InputSoundingData.H:291
+
InputSoundingData::z_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > z_inp_sound_d
Definition: InputSoundingData.H:287
+
InputSoundingData::qv_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > qv_inp_sound_d
Definition: InputSoundingData.H:287
+
InputSoundingData::theta_inp_sound
amrex::Vector< amrex::Real > theta_inp_sound
Definition: InputSoundingData.H:286
InputSoundingData::InputSoundingData
InputSoundingData()
Definition: InputSoundingData.H:22
-
InputSoundingData::theta_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > theta_inp_sound_d
Definition: InputSoundingData.H:267
-
InputSoundingData::size
int size() const
Definition: InputSoundingData.H:254
+
InputSoundingData::theta_inp_sound_d
amrex::Gpu::DeviceVector< amrex::Real > theta_inp_sound_d
Definition: InputSoundingData.H:287
+
InputSoundingData::size
int size() const
Definition: InputSoundingData.H:274
InputSoundingData::calc_rho_p
void calc_rho_p()
Definition: InputSoundingData.H:124
diff --git a/MOSTStress_8H_source.html b/MOSTStress_8H_source.html index 08ccbc3b77..4a4aa6a4bd 100644 --- a/MOSTStress_8H_source.html +++ b/MOSTStress_8H_source.html @@ -737,337 +737,339 @@
649  amrex::Real wsp = sqrt(velx*velx+vely*vely);
650  amrex::Real num1 = (theta-theta_mean)*wsp_mean;
651  amrex::Real num2 = (theta_mean-theta_surf)*wsp;
-
652  amrex::Real moflux = tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean);
-
653  amrex::Real deltaz = dz * (zlo - k);
-
654 
-
655  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
-
656  }
-
657 
-
658  AMREX_GPU_DEVICE
-
659  AMREX_FORCE_INLINE
-
660  void
-
661  compute_u_flux (const int& i,
-
662  const int& j,
-
663  const int& k,
-
664  const int& icomp,
-
665  const int& var_idx,
-
666  const amrex::Real& dz,
-
667  const amrex::Array4<const amrex::Real>& cons_arr,
-
668  const amrex::Array4<const amrex::Real>& velx_arr,
-
669  const amrex::Array4<const amrex::Real>& vely_arr,
-
670  const amrex::Array4<const amrex::Real>& eta_arr,
-
671  const amrex::Array4<const amrex::Real>& umm_arr,
-
672  const amrex::Array4<const amrex::Real>& um_arr,
-
673  const amrex::Array4<const amrex::Real>& u_star_arr,
-
674  const amrex::Array4<amrex::Real>& dest_arr) const
-
675  {
-
676  amrex::Real velx, vely, rho, eta;
-
677  int jy, ie, je, ic, jc;
-
678 
-
679  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
-
680  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
-
681 
-
682  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
683  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
-
684 
-
685  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
-
686  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
687  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
688  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
689 
-
690  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
-
691  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
692  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
693  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
694 
-
695  velx = velx_arr(i,j,zlo);
-
696  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
-
697  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
-
698  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
-
699  + cons_arr(ic ,jc,zlo,Rho_comp) );
-
700  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
-
701  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
-
702 
-
703  amrex::Real umean = um_arr(i,j,zlo);
-
704  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
-
705  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
-
706 
-
707  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
708  amrex::Real num1 = (velx-umean)*wsp_mean;
-
709  amrex::Real num2 = umean*wsp;
-
710  amrex::Real stressx = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
-
711  amrex::Real deltaz = dz * (zlo - k);
-
712 
-
713  if (var_idx == Vars::xmom) {
-
714  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
-
715  } else {
-
716  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
-
717  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
-
718  }
-
719  }
-
720 
-
721  AMREX_GPU_DEVICE
-
722  AMREX_FORCE_INLINE
-
723  void
-
724  compute_v_flux (const int& i,
-
725  const int& j,
-
726  const int& k,
-
727  const int& icomp,
-
728  const int& var_idx,
-
729  const amrex::Real& dz,
-
730  const amrex::Array4<const amrex::Real>& cons_arr,
-
731  const amrex::Array4<const amrex::Real>& velx_arr,
-
732  const amrex::Array4<const amrex::Real>& vely_arr,
-
733  const amrex::Array4<const amrex::Real>& eta_arr,
-
734  const amrex::Array4<const amrex::Real>& umm_arr,
-
735  const amrex::Array4<const amrex::Real>& vm_arr,
-
736  const amrex::Array4<const amrex::Real>& u_star_arr,
-
737  const amrex::Array4<amrex::Real>& dest_arr) const
-
738  {
-
739  amrex::Real velx, vely, rho, eta;
-
740  int ix, ie, je, ic, jc;
-
741 
-
742  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
743  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
-
744 
-
745  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
-
746  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
-
747 
-
748  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
749  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
-
750  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
751  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
752 
-
753  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
754  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
-
755  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
756  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
757 
-
758  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
-
759  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
-
760  vely = vely_arr(i,j,zlo);
-
761  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
-
762  + cons_arr(ic,jc ,zlo,Rho_comp) );
-
763  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
-
764  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
-
765 
-
766  amrex::Real vmean = vm_arr(i,j,zlo);
-
767  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
-
768  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
-
769 
-
770  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
771  amrex::Real num1 = (vely-vmean)*wsp_mean;
-
772  amrex::Real num2 = vmean*wsp;
-
773  amrex::Real stressy = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
-
774  amrex::Real deltaz = dz * (zlo - k);
-
775 
-
776  if (var_idx == Vars::ymom) {
-
777  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
-
778  } else {
-
779  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
-
780  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
-
781  }
-
782  }
-
783 
-
784 private:
-
785  int zlo;
-
786 };
-
787 
-
788 
-
789 /**
-
790  * Donelan flux formulation
-
791  */
-
792 struct donelan_flux
-
793 {
-
794  donelan_flux (int l_zlo)
-
795  : zlo(l_zlo) {}
-
796 
-
797 
-
798  AMREX_GPU_DEVICE
-
799  AMREX_FORCE_INLINE
-
800  void
-
801  compute_t_flux (const int& i,
-
802  const int& j,
-
803  const int& k,
-
804  const int& n,
-
805  const int& icomp,
-
806  const amrex::Real& dz,
-
807  const amrex::Array4<const amrex::Real>& cons_arr,
-
808  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
-
809  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
-
810  const amrex::Array4<const amrex::Real>& eta_arr,
-
811  const amrex::Array4<const amrex::Real>& umm_arr,
-
812  const amrex::Array4<const amrex::Real>& tm_arr,
-
813  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
814  const amrex::Array4<const amrex::Real>& /*t_star_arr*/,
-
815  const amrex::Array4<const amrex::Real>& t_surf_arr,
-
816  const amrex::Array4<amrex::Real>& dest_arr) const
-
817  {
-
818  amrex::Real rho, theta, eta;
-
819  int ie, je, ic, jc;
-
820 
-
821  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
822  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
823  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
824  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
825 
-
826  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
827  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
828  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
829  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
830 
-
831  rho = cons_arr(ic,jc,zlo,Rho_comp);
-
832  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
-
833  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
-
834 
-
835  amrex::Real Cd = 0.0012;
-
836  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
-
837  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
-
838  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
-
839  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
-
840  amrex::Real deltaz = dz * (zlo - k);
-
841 
-
842  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
-
843  }
-
844 
-
845  AMREX_GPU_DEVICE
-
846  AMREX_FORCE_INLINE
-
847  void
-
848  compute_u_flux (const int& i,
-
849  const int& j,
-
850  const int& k,
-
851  const int& icomp,
-
852  const int& var_idx,
-
853  const amrex::Real& dz,
-
854  const amrex::Array4<const amrex::Real>& cons_arr,
-
855  const amrex::Array4<const amrex::Real>& velx_arr,
-
856  const amrex::Array4<const amrex::Real>& vely_arr,
-
857  const amrex::Array4<const amrex::Real>& eta_arr,
-
858  const amrex::Array4<const amrex::Real>& umm_arr,
-
859  const amrex::Array4<const amrex::Real>& /*um_arr*/,
-
860  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
861  const amrex::Array4<amrex::Real>& dest_arr) const
-
862  {
-
863  amrex::Real velx, vely, rho, eta;
-
864  int jy, ie, je, ic, jc;
-
865 
-
866  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
-
867  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
-
868 
-
869  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
-
870  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
-
871 
-
872  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
-
873  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
-
874  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
875  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
876 
-
877  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
-
878  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
-
879  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
880  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
881 
-
882  velx = velx_arr(i,j,zlo);
-
883  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
-
884  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
-
885  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
-
886  + cons_arr(ic ,jc,zlo,Rho_comp) );
-
887  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
-
888  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
-
889 
-
890  amrex::Real Cd = 0.001;
-
891  const amrex::Real c = 7e-5;
-
892  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
893  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
-
894  if (wsp_mean <= 5.0) {
-
895  Cd = 0.001;
-
896  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
-
897  Cd = 0.001 + c * (wsp_mean - 5.0);
-
898  } else {
-
899  Cd = 0.0024;
-
900  }
-
901  amrex::Real stressx = Cd * velx * wsp;
-
902  amrex::Real deltaz = dz * (zlo - k);
-
903 
-
904  if (var_idx == Vars::xmom) {
-
905  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
-
906  } else {
-
907  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
-
908  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
-
909  }
-
910  }
-
911 
-
912  AMREX_GPU_DEVICE
-
913  AMREX_FORCE_INLINE
-
914  void
-
915  compute_v_flux (const int& i,
-
916  const int& j,
-
917  const int& k,
-
918  const int& icomp,
-
919  const int& var_idx,
-
920  const amrex::Real& dz,
-
921  const amrex::Array4<const amrex::Real>& cons_arr,
-
922  const amrex::Array4<const amrex::Real>& velx_arr,
-
923  const amrex::Array4<const amrex::Real>& vely_arr,
-
924  const amrex::Array4<const amrex::Real>& eta_arr,
-
925  const amrex::Array4<const amrex::Real>& umm_arr,
-
926  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
-
927  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
-
928  const amrex::Array4<amrex::Real>& dest_arr) const
-
929  {
-
930  amrex::Real velx, vely, rho, eta;
-
931  int ix, ie, je, ic, jc;
-
932 
-
933  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
-
934  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
-
935 
-
936  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
-
937  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
-
938 
-
939  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
-
940  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
-
941  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
-
942  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
-
943 
-
944  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
-
945  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
-
946  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
-
947  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
-
948 
-
949  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
-
950  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
-
951  vely = vely_arr(i,j,zlo);
-
952  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
-
953  + cons_arr(ic,jc ,zlo,Rho_comp) );
-
954  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
-
955  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
-
956 
-
957  amrex::Real Cd = 0.001;
-
958  const amrex::Real c = 7e-5;
-
959  amrex::Real wsp = sqrt(velx*velx+vely*vely);
-
960  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
-
961  if (wsp_mean <= 5.0) {
-
962  Cd = 0.001;
-
963  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
-
964  Cd = 0.001 + c * (wsp_mean - 5.0);
-
965  } else {
-
966  Cd = 0.0024;
-
967  }
-
968  amrex::Real stressy = Cd * vely * wsp;
-
969  amrex::Real deltaz = dz * (zlo - k);
-
970 
-
971  if (var_idx == Vars::ymom) {
-
972  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
-
973  } else {
-
974  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
-
975  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
-
976  }
-
977  }
-
978 
-
979 private:
-
980  int zlo;
-
981 };
-
982 #endif
+
652  amrex::Real moflux = (std::abs(tstar) > EPS) ?
+
653  tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
+
654  amrex::Real deltaz = dz * (zlo - k);
+
655 
+
656  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
+
657  }
+
658 
+
659  AMREX_GPU_DEVICE
+
660  AMREX_FORCE_INLINE
+
661  void
+
662  compute_u_flux (const int& i,
+
663  const int& j,
+
664  const int& k,
+
665  const int& icomp,
+
666  const int& var_idx,
+
667  const amrex::Real& dz,
+
668  const amrex::Array4<const amrex::Real>& cons_arr,
+
669  const amrex::Array4<const amrex::Real>& velx_arr,
+
670  const amrex::Array4<const amrex::Real>& vely_arr,
+
671  const amrex::Array4<const amrex::Real>& eta_arr,
+
672  const amrex::Array4<const amrex::Real>& umm_arr,
+
673  const amrex::Array4<const amrex::Real>& um_arr,
+
674  const amrex::Array4<const amrex::Real>& u_star_arr,
+
675  const amrex::Array4<amrex::Real>& dest_arr) const
+
676  {
+
677  amrex::Real velx, vely, rho, eta;
+
678  int jy, ie, je, ic, jc;
+
679 
+
680  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
+
681  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
+
682 
+
683  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
684  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
+
685 
+
686  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
+
687  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
688  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
689  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
690 
+
691  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
+
692  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
693  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
694  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
695 
+
696  velx = velx_arr(i,j,zlo);
+
697  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
+
698  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
+
699  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
+
700  + cons_arr(ic ,jc,zlo,Rho_comp) );
+
701  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
+
702  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
+
703 
+
704  amrex::Real umean = um_arr(i,j,zlo);
+
705  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
+
706  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
+
707 
+
708  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
709  amrex::Real num1 = (velx-umean)*wsp_mean;
+
710  amrex::Real num2 = umean*wsp;
+
711  amrex::Real stressx = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
+
712  amrex::Real deltaz = dz * (zlo - k);
+
713 
+
714  if (var_idx == Vars::xmom) {
+
715  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
+
716  } else {
+
717  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
+
718  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
+
719  }
+
720  }
+
721 
+
722  AMREX_GPU_DEVICE
+
723  AMREX_FORCE_INLINE
+
724  void
+
725  compute_v_flux (const int& i,
+
726  const int& j,
+
727  const int& k,
+
728  const int& icomp,
+
729  const int& var_idx,
+
730  const amrex::Real& dz,
+
731  const amrex::Array4<const amrex::Real>& cons_arr,
+
732  const amrex::Array4<const amrex::Real>& velx_arr,
+
733  const amrex::Array4<const amrex::Real>& vely_arr,
+
734  const amrex::Array4<const amrex::Real>& eta_arr,
+
735  const amrex::Array4<const amrex::Real>& umm_arr,
+
736  const amrex::Array4<const amrex::Real>& vm_arr,
+
737  const amrex::Array4<const amrex::Real>& u_star_arr,
+
738  const amrex::Array4<amrex::Real>& dest_arr) const
+
739  {
+
740  amrex::Real velx, vely, rho, eta;
+
741  int ix, ie, je, ic, jc;
+
742 
+
743  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
744  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
+
745 
+
746  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
+
747  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
+
748 
+
749  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
750  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
+
751  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
752  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
753 
+
754  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
755  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
+
756  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
757  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
758 
+
759  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
+
760  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
+
761  vely = vely_arr(i,j,zlo);
+
762  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
+
763  + cons_arr(ic,jc ,zlo,Rho_comp) );
+
764  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
+
765  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
+
766 
+
767  amrex::Real vmean = vm_arr(i,j,zlo);
+
768  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
+
769  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
+
770 
+
771  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
772  amrex::Real num1 = (vely-vmean)*wsp_mean;
+
773  amrex::Real num2 = vmean*wsp;
+
774  amrex::Real stressy = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
+
775  amrex::Real deltaz = dz * (zlo - k);
+
776 
+
777  if (var_idx == Vars::ymom) {
+
778  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
+
779  } else {
+
780  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
+
781  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
+
782  }
+
783  }
+
784 
+
785 private:
+
786  int zlo;
+
787  static constexpr amrex::Real EPS = 1e-16;
+
788 };
+
789 
+
790 
+
791 /**
+
792  * Donelan flux formulation
+
793  */
+
794 struct donelan_flux
+
795 {
+
796  donelan_flux (int l_zlo)
+
797  : zlo(l_zlo) {}
+
798 
+
799 
+
800  AMREX_GPU_DEVICE
+
801  AMREX_FORCE_INLINE
+
802  void
+
803  compute_t_flux (const int& i,
+
804  const int& j,
+
805  const int& k,
+
806  const int& n,
+
807  const int& icomp,
+
808  const amrex::Real& dz,
+
809  const amrex::Array4<const amrex::Real>& cons_arr,
+
810  const amrex::Array4<const amrex::Real>& /*velx_arr*/,
+
811  const amrex::Array4<const amrex::Real>& /*vely_arr*/,
+
812  const amrex::Array4<const amrex::Real>& eta_arr,
+
813  const amrex::Array4<const amrex::Real>& umm_arr,
+
814  const amrex::Array4<const amrex::Real>& tm_arr,
+
815  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
816  const amrex::Array4<const amrex::Real>& /*t_star_arr*/,
+
817  const amrex::Array4<const amrex::Real>& t_surf_arr,
+
818  const amrex::Array4<amrex::Real>& dest_arr) const
+
819  {
+
820  amrex::Real rho, theta, eta;
+
821  int ie, je, ic, jc;
+
822 
+
823  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
824  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
825  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
826  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
827 
+
828  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
829  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
830  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
831  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
832 
+
833  rho = cons_arr(ic,jc,zlo,Rho_comp);
+
834  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
+
835  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
+
836 
+
837  amrex::Real Cd = 0.0012;
+
838  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
+
839  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
+
840  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
+
841  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
+
842  amrex::Real deltaz = dz * (zlo - k);
+
843 
+
844  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
+
845  }
+
846 
+
847  AMREX_GPU_DEVICE
+
848  AMREX_FORCE_INLINE
+
849  void
+
850  compute_u_flux (const int& i,
+
851  const int& j,
+
852  const int& k,
+
853  const int& icomp,
+
854  const int& var_idx,
+
855  const amrex::Real& dz,
+
856  const amrex::Array4<const amrex::Real>& cons_arr,
+
857  const amrex::Array4<const amrex::Real>& velx_arr,
+
858  const amrex::Array4<const amrex::Real>& vely_arr,
+
859  const amrex::Array4<const amrex::Real>& eta_arr,
+
860  const amrex::Array4<const amrex::Real>& umm_arr,
+
861  const amrex::Array4<const amrex::Real>& /*um_arr*/,
+
862  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
863  const amrex::Array4<amrex::Real>& dest_arr) const
+
864  {
+
865  amrex::Real velx, vely, rho, eta;
+
866  int jy, ie, je, ic, jc;
+
867 
+
868  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
+
869  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
+
870 
+
871  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
+
872  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
+
873 
+
874  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
+
875  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
+
876  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
877  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
878 
+
879  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
+
880  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
+
881  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
882  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
883 
+
884  velx = velx_arr(i,j,zlo);
+
885  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
+
886  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
+
887  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
+
888  + cons_arr(ic ,jc,zlo,Rho_comp) );
+
889  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
+
890  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
+
891 
+
892  amrex::Real Cd = 0.001;
+
893  const amrex::Real c = 7e-5;
+
894  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
895  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
+
896  if (wsp_mean <= 5.0) {
+
897  Cd = 0.001;
+
898  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
+
899  Cd = 0.001 + c * (wsp_mean - 5.0);
+
900  } else {
+
901  Cd = 0.0024;
+
902  }
+
903  amrex::Real stressx = Cd * velx * wsp;
+
904  amrex::Real deltaz = dz * (zlo - k);
+
905 
+
906  if (var_idx == Vars::xmom) {
+
907  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
+
908  } else {
+
909  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
+
910  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
+
911  }
+
912  }
+
913 
+
914  AMREX_GPU_DEVICE
+
915  AMREX_FORCE_INLINE
+
916  void
+
917  compute_v_flux (const int& i,
+
918  const int& j,
+
919  const int& k,
+
920  const int& icomp,
+
921  const int& var_idx,
+
922  const amrex::Real& dz,
+
923  const amrex::Array4<const amrex::Real>& cons_arr,
+
924  const amrex::Array4<const amrex::Real>& velx_arr,
+
925  const amrex::Array4<const amrex::Real>& vely_arr,
+
926  const amrex::Array4<const amrex::Real>& eta_arr,
+
927  const amrex::Array4<const amrex::Real>& umm_arr,
+
928  const amrex::Array4<const amrex::Real>& /*vm_arr*/,
+
929  const amrex::Array4<const amrex::Real>& /*u_star_arr*/,
+
930  const amrex::Array4<amrex::Real>& dest_arr) const
+
931  {
+
932  amrex::Real velx, vely, rho, eta;
+
933  int ix, ie, je, ic, jc;
+
934 
+
935  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
+
936  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
+
937 
+
938  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
+
939  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
+
940 
+
941  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
+
942  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
+
943  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
+
944  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
+
945 
+
946  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
+
947  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
+
948  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
+
949  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
+
950 
+
951  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
+
952  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
+
953  vely = vely_arr(i,j,zlo);
+
954  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
+
955  + cons_arr(ic,jc ,zlo,Rho_comp) );
+
956  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
+
957  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
+
958 
+
959  amrex::Real Cd = 0.001;
+
960  const amrex::Real c = 7e-5;
+
961  amrex::Real wsp = sqrt(velx*velx+vely*vely);
+
962  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
+
963  if (wsp_mean <= 5.0) {
+
964  Cd = 0.001;
+
965  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
+
966  Cd = 0.001 + c * (wsp_mean - 5.0);
+
967  } else {
+
968  Cd = 0.0024;
+
969  }
+
970  amrex::Real stressy = Cd * vely * wsp;
+
971  amrex::Real deltaz = dz * (zlo - k);
+
972 
+
973  if (var_idx == Vars::ymom) {
+
974  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
+
975  } else {
+
976  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
+
977  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
+
978  }
+
979  }
+
980 
+
981 private:
+
982  int zlo;
+
983 };
+
984 #endif
ERF_Constants.H
KAPPA
constexpr amrex::Real KAPPA
Definition: ERF_Constants.H:19
@@ -1101,18 +1103,19 @@
adiabatic::sfuns
similarity_funs sfuns
Definition: MOSTStress.H:100
adiabatic::iterate_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void iterate_flux(const int &i, const int &j, const int &k, const int &, const amrex::Array4< const amrex::Real > &z0_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &t_star_arr, const amrex::Array4< amrex::Real > &, const amrex::Array4< amrex::Real > &olen_arr) const
Definition: MOSTStress.H:81
adiabatic::mdata
most_data mdata
Definition: MOSTStress.H:99
-
donelan_flux
Definition: MOSTStress.H:793
-
donelan_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:915
-
donelan_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:848
-
donelan_flux::donelan_flux
donelan_flux(int l_zlo)
Definition: MOSTStress.H:794
-
donelan_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:801
-
donelan_flux::zlo
int zlo
Definition: MOSTStress.H:980
+
donelan_flux
Definition: MOSTStress.H:795
+
donelan_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:917
+
donelan_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:850
+
donelan_flux::donelan_flux
donelan_flux(int l_zlo)
Definition: MOSTStress.H:796
+
donelan_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:803
+
donelan_flux::zlo
int zlo
Definition: MOSTStress.H:982
moeng_flux
Definition: MOSTStress.H:589
+
moeng_flux::EPS
static constexpr amrex::Real EPS
Definition: MOSTStress.H:787
moeng_flux::moeng_flux
moeng_flux(int l_zlo)
Definition: MOSTStress.H:590
-
moeng_flux::zlo
int zlo
Definition: MOSTStress.H:785
-
moeng_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:661
+
moeng_flux::zlo
int zlo
Definition: MOSTStress.H:786
+
moeng_flux::compute_u_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:662
moeng_flux::compute_t_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:597
-
moeng_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:724
+
moeng_flux::compute_v_flux
AMREX_GPU_DEVICE AMREX_FORCE_INLINE void compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) const
Definition: MOSTStress.H:725
most_data
Definition: MOSTStress.H:11
most_data::zref
amrex::Real zref
Reference height (m)
Definition: MOSTStress.H:13
most_data::Cnk_b2
amrex::Real Cnk_b2
Modified Charnock Eq (4) https://doi.org/10.1175/JAMC-D-17-0137.1.
Definition: MOSTStress.H:20
diff --git a/Microphysics_8H_source.html b/Microphysics_8H_source.html index 358db73bcb..46db5d3f07 100644 --- a/Microphysics_8H_source.html +++ b/Microphysics_8H_source.html @@ -324,8 +324,8 @@
MicVar::qr
@ qr
Definition: Microphysics.H:36
MicVar::qp
@ qp
Definition: Microphysics.H:30
SolverChoice
Definition: DataStruct.H:31
-
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:278
-
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:307
+
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:284
+
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:313
diff --git a/PBLModels_8cpp.html b/PBLModels_8cpp.html index d2b37c5d2f..7b9327348b 100644 --- a/PBLModels_8cpp.html +++ b/PBLModels_8cpp.html @@ -423,7 +423,7 @@

227 
228  amrex::Real SM = (R2*E2 - R1*E4)/(E2*E3 - E1*E4);
229  amrex::Real SH = (R1*E3 - R2*E1)/(E2*E3 - E1*E4);
-
230  amrex::Real SQ = 3.0 * SM;
+
230  amrex::Real SQ = 3.0 * SM; // Nakanishi & Niino 2009
231 
232  // Finally, compute the eddy viscosity/diffusivities
233  const amrex::Real rho = cell_data(i,j,k,Rho_comp);
diff --git a/classABLMost-members.html b/classABLMost-members.html index 842bf156c8..4bd5575f14 100644 --- a/classABLMost-members.html +++ b/classABLMost-members.html @@ -107,15 +107,17 @@ olenABLMostprivate rough_typeABLMost RoughCalcType enum nameABLMost - surf_tempABLMostprivate - surf_temp_fluxABLMostprivate - t_starABLMostprivate - t_surfABLMostprivate - theta_typeABLMost - ThetaCalcType enum nameABLMost - u_starABLMostprivate - update_fluxes(int lev, int max_iters=25)ABLMost - update_mac_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim)ABLMostinline + surf_heating_rateABLMostprivate + surf_tempABLMostprivate + surf_temp_fluxABLMostprivate + t_starABLMostprivate + t_surfABLMostprivate + theta_typeABLMost + ThetaCalcType enum nameABLMost + u_starABLMostprivate + update_fluxes(int lev, amrex::Real cur_time, int max_iters=25)ABLMost + update_mac_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim)ABLMostinline + update_surf_temp(amrex::Real cur_time)ABLMostinline z0_constABLMostprivate z_0ABLMostprivate diff --git a/classABLMost.html b/classABLMost.html index 7ba0c87455..ddcc297fa7 100644 --- a/classABLMost.html +++ b/classABLMost.html @@ -143,13 +143,15 @@ Public Member Functions

 ABLMost (const amrex::Vector< amrex::Geometry > &geom, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &z_phys_nd, int ng_in)   +void update_surf_temp (amrex::Real cur_time) +  void impose_most_bcs (const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys)   template<typename FluxCalc > void compute_most_bcs (const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)   -void update_fluxes (int lev, int max_iters=25) -  +void update_fluxes (int lev, amrex::Real cur_time, int max_iters=25) +  template<typename FluxIter > void compute_fluxes (const int &lev, const int &max_iters, const FluxIter &most_flux)   @@ -182,6 +184,8 @@   amrex::Real surf_temp   +amrex::Real surf_heating_rate {0} +  amrex::Real surf_temp_flux {0}   amrex::Real cnk_a {0.0185} @@ -233,10 +237,10 @@

DONELAN 

Donelan functional form.

-
174  {
-
175  MOENG = 0, ///< Moeng functional form
-
176  DONELAN ///< Donelan functional form
-
177  };
+
200  {
+
201  MOENG = 0, ///< Moeng functional form
+
202  DONELAN ///< Donelan functional form
+
203  };
@@ -265,11 +269,11 @@

CHARNOCK  MODIFIED_CHARNOCK  -
185  {
-
186  CONSTANT = 0, ///< Constant z0
-
187  CHARNOCK,
-
188  MODIFIED_CHARNOCK
-
189  };
+
211  {
+
212  CONSTANT = 0, ///< Constant z0
+
213  CHARNOCK,
+
214  MODIFIED_CHARNOCK
+
215  };
@@ -299,11 +303,11 @@

SURFACE_TEMPERATURE 

Surface temperature specified.

-
179  {
-
180  ADIABATIC = 0,
-
181  HEAT_FLUX, ///< Heat-flux specified
-
182  SURFACE_TEMPERATURE ///< Surface temperature specified
-
183  };
+
205  {
+
206  ADIABATIC = 0,
+
207  HEAT_FLUX, ///< Heat-flux specified
+
208  SURFACE_TEMPERATURE ///< Surface temperature specified
+
209  };
@@ -379,101 +383,110 @@

54  auto erf_st = pp.query("most.surf_temp", surf_temp);
55  if (erf_st) {
56  theta_type = ThetaCalcType::SURFACE_TEMPERATURE;
-
57  } else {
-
58  pp.query("most.surf_temp_flux", surf_temp_flux);
-
59  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
-
60  theta_type = ThetaCalcType::HEAT_FLUX;
-
61  } else {
-
62  theta_type = ThetaCalcType::ADIABATIC;
-
63  }
-
64  }
-
65 
-
66  // Specify how to compute the flux
-
67  std::string rough_string{"constant"};
-
68  pp.query("most.roughness_type", rough_string);
-
69  if (rough_string == "constant") {
-
70  rough_type = RoughCalcType::CONSTANT;
-
71  } else if (rough_string == "charnock") {
-
72  rough_type = RoughCalcType::CHARNOCK;
-
73  pp.query("most.charnock_constant",cnk_a);
-
74  } else if (rough_string == "modified_charnock") {
-
75  rough_type = RoughCalcType::MODIFIED_CHARNOCK;
-
76  pp.query("most.modified_charnock_depth",depth);
-
77  } else {
-
78  amrex::Abort("Undefined MOST roughness type!");
-
79  }
-
80 
-
81  int nlevs = m_geom.size();
-
82  z_0.resize(nlevs);
-
83  u_star.resize(nlevs);
-
84  t_star.resize(nlevs);
-
85  t_surf.resize(nlevs);
-
86  olen.resize(nlevs);
-
87 
-
88  for (int lev = 0; lev < nlevs; lev++)
-
89  {
-
90  // Z0 heights
-
91  //--------------------------------------------------------
-
92  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng_in);
-
93  bx.setSmall(2,0);
-
94  bx.setBig(2,0);
-
95  z_0[lev].resize(bx,1);
-
96  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
-
97 
-
98  // 2D MFs for U*, T*, T_surf
+
57  pp.query("most.surf_heating_rate", surf_heating_rate); // [K/h]
+
58  surf_heating_rate = surf_heating_rate / 3600.0; // [K/s]
+
59  if (pp.query("most.surf_temp_flux", surf_temp_flux)) {
+
60  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
61  }
+
62  } else {
+
63  pp.query("most.surf_temp_flux", surf_temp_flux);
+
64  if (pp.query("most.surf_heating_rate", surf_heating_rate)) {
+
65  amrex::Abort("Can only specify one of surf_temp_flux or surf_heating_rate");
+
66  }
+
67  if (std::abs(surf_temp_flux) > std::numeric_limits<amrex::Real>::epsilon()) {
+
68  theta_type = ThetaCalcType::HEAT_FLUX;
+
69  } else {
+
70  theta_type = ThetaCalcType::ADIABATIC;
+
71  }
+
72  }
+
73 
+
74  // Specify how to compute the flux
+
75  std::string rough_string{"constant"};
+
76  pp.query("most.roughness_type", rough_string);
+
77  if (rough_string == "constant") {
+
78  rough_type = RoughCalcType::CONSTANT;
+
79  } else if (rough_string == "charnock") {
+
80  rough_type = RoughCalcType::CHARNOCK;
+
81  pp.query("most.charnock_constant",cnk_a);
+
82  } else if (rough_string == "modified_charnock") {
+
83  rough_type = RoughCalcType::MODIFIED_CHARNOCK;
+
84  pp.query("most.modified_charnock_depth",depth);
+
85  } else {
+
86  amrex::Abort("Undefined MOST roughness type!");
+
87  }
+
88 
+
89  int nlevs = m_geom.size();
+
90  z_0.resize(nlevs);
+
91  u_star.resize(nlevs);
+
92  t_star.resize(nlevs);
+
93  t_surf.resize(nlevs);
+
94  olen.resize(nlevs);
+
95 
+
96  for (int lev = 0; lev < nlevs; lev++)
+
97  {
+
98  // Z0 heights
99  //--------------------------------------------------------
-
100  { // CC vars
-
101  auto& mf = vars_old[lev][Vars::cons];
-
102  // Create a 2D ba, dm, & ghost cells
-
103  amrex::BoxArray ba = mf.boxArray();
-
104  amrex::BoxList bl2d = ba.boxList();
-
105  for (auto& b : bl2d) {
-
106  b.setRange(2,0);
-
107  }
-
108  amrex::BoxArray ba2d(std::move(bl2d));
-
109  const amrex::DistributionMapping& dm = mf.DistributionMap();
-
110  const int ncomp = 1;
-
111  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
-
112 
-
113  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
114  u_star[lev]->setVal(1.E34);
-
115 
-
116  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
117  t_star[lev]->setVal(1.E34);
-
118 
-
119  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
120  olen[lev]->setVal(1.E34);
-
121 
-
122  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
-
123  if (erf_st) {
-
124  t_surf[lev]->setVal(surf_temp);
-
125  } else {
-
126  t_surf[lev]->setVal(0.0);
-
127  }
-
128  }
-
129  }// lev
-
130  }
+
100  amrex::Box bx = amrex::grow(m_geom[lev].Domain(),ng_in);
+
101  bx.setSmall(2,0);
+
102  bx.setBig(2,0);
+
103  z_0[lev].resize(bx,1);
+
104  z_0[lev].setVal<amrex::RunOn::Device>(z0_const);
+
105 
+
106  // 2D MFs for U*, T*, T_surf
+
107  //--------------------------------------------------------
+
108  { // CC vars
+
109  auto& mf = vars_old[lev][Vars::cons];
+
110  // Create a 2D ba, dm, & ghost cells
+
111  amrex::BoxArray ba = mf.boxArray();
+
112  amrex::BoxList bl2d = ba.boxList();
+
113  for (auto& b : bl2d) {
+
114  b.setRange(2,0);
+
115  }
+
116  amrex::BoxArray ba2d(std::move(bl2d));
+
117  const amrex::DistributionMapping& dm = mf.DistributionMap();
+
118  const int ncomp = 1;
+
119  amrex::IntVect ng = mf.nGrowVect(); ng[2]=0;
+
120 
+
121  u_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
122  u_star[lev]->setVal(1.E34);
+
123 
+
124  t_star[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
125  t_star[lev]->setVal(1.E34);
+
126 
+
127  olen[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
128  olen[lev]->setVal(1.E34);
+
129 
+
130  t_surf[lev] = std::make_unique<amrex::MultiFab>(ba2d,dm,ncomp,ng);
+
131  if (erf_st) {
+
132  t_surf[lev]->setVal(surf_temp);
+
133  } else {
+
134  t_surf[lev]->setVal(0.0);
+
135  }
+
136  }
+
137  }// lev
+
138  }
pp
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
Definition: Microphysics_Utils.H:187
-
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:207
-
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:202
-
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:201
-
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:208
-
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:200
-
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:204
+
ABLMost::olen
amrex::Vector< std::unique_ptr< amrex::MultiFab > > olen
Definition: ABLMost.H:234
+
ABLMost::z_0
amrex::Vector< amrex::FArrayBox > z_0
Definition: ABLMost.H:229
+
ABLMost::m_geom
amrex::Vector< amrex::Geometry > m_geom
Definition: ABLMost.H:228
+
ABLMost::t_surf
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_surf
Definition: ABLMost.H:235
+
ABLMost::depth
amrex::Real depth
Definition: ABLMost.H:227
+
ABLMost::surf_heating_rate
amrex::Real surf_heating_rate
Definition: ABLMost.H:224
+
ABLMost::m_ma
MOSTAverage m_ma
Definition: ABLMost.H:231
ABLMost::ThetaCalcType::SURFACE_TEMPERATURE
@ SURFACE_TEMPERATURE
Surface temperature specified.
ABLMost::ThetaCalcType::HEAT_FLUX
@ HEAT_FLUX
Heat-flux specified.
-
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:197
-
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:199
-
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:192
+
ABLMost::surf_temp
amrex::Real surf_temp
Definition: ABLMost.H:223
+
ABLMost::cnk_a
amrex::Real cnk_a
Definition: ABLMost.H:226
+
ABLMost::theta_type
ThetaCalcType theta_type
Definition: ABLMost.H:218
ABLMost::FluxCalcType::MOENG
@ MOENG
Moeng functional form.
ABLMost::FluxCalcType::DONELAN
@ DONELAN
Donelan functional form.
-
ABLMost::rough_type
RoughCalcType rough_type
Definition: ABLMost.H:193
-
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:198
-
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:206
-
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:205
-
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:196
-
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:191
+
ABLMost::rough_type
RoughCalcType rough_type
Definition: ABLMost.H:219
+
ABLMost::surf_temp_flux
amrex::Real surf_temp_flux
Definition: ABLMost.H:225
+
ABLMost::t_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > t_star
Definition: ABLMost.H:233
+
ABLMost::u_star
amrex::Vector< std::unique_ptr< amrex::MultiFab > > u_star
Definition: ABLMost.H:232
+
ABLMost::z0_const
amrex::Real z0_const
Definition: ABLMost.H:222
+
ABLMost::flux_type
FluxCalcType flux_type
Definition: ABLMost.H:217
ABLMost::RoughCalcType::CONSTANT
@ CONSTANT
Constant z0.
@@ -533,34 +546,34 @@

71 {
-
72  // Pointers to the computed averages
-
73  const auto *const tm_ptr = m_ma.get_average(lev,2);
-
74  const auto *const umm_ptr = m_ma.get_average(lev,3);
-
75 
-
76  // Ghost cells
-
77  amrex::IntVect ng = u_star[lev]->nGrowVect(); ng[2]=0;
-
78 
-
79  for (MFIter mfi(*u_star[lev]); mfi.isValid(); ++mfi)
-
80  {
-
81  amrex::Box gtbx = mfi.growntilebox(ng);
-
82 
-
83  auto u_star_arr = u_star[lev]->array(mfi);
-
84  auto t_star_arr = t_star[lev]->array(mfi);
-
85  auto t_surf_arr = t_surf[lev]->array(mfi);
-
86  auto olen_arr = olen[lev]->array(mfi);
-
87 
-
88  const auto tm_arr = tm_ptr->array(mfi);
-
89  const auto umm_arr = umm_ptr->array(mfi);
-
90  const auto z0_arr = z_0[lev].array();
-
91 
-
92  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
93  {
-
94  most_flux.iterate_flux(i, j, k, max_iters, z0_arr, umm_arr, tm_arr,
-
95  u_star_arr, t_star_arr, t_surf_arr, olen_arr);
-
96  });
-
97  }
-
98 }
+
73 {
+
74  // Pointers to the computed averages
+
75  const auto *const tm_ptr = m_ma.get_average(lev,2);
+
76  const auto *const umm_ptr = m_ma.get_average(lev,3);
+
77 
+
78  // Ghost cells
+
79  amrex::IntVect ng = u_star[lev]->nGrowVect(); ng[2]=0;
+
80 
+
81  for (MFIter mfi(*u_star[lev]); mfi.isValid(); ++mfi)
+
82  {
+
83  amrex::Box gtbx = mfi.growntilebox(ng);
+
84 
+
85  auto u_star_arr = u_star[lev]->array(mfi);
+
86  auto t_star_arr = t_star[lev]->array(mfi);
+
87  auto t_surf_arr = t_surf[lev]->array(mfi);
+
88  auto olen_arr = olen[lev]->array(mfi);
+
89 
+
90  const auto tm_arr = tm_ptr->array(mfi);
+
91  const auto umm_arr = umm_ptr->array(mfi);
+
92  const auto z0_arr = z_0[lev].array();
+
93 
+
94  ParallelFor(gtbx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
95  {
+
96  most_flux.iterate_flux(i, j, k, max_iters, z0_arr, umm_arr, tm_arr,
+
97  u_star_arr, t_star_arr, t_surf_arr, olen_arr);
+
98  });
+
99  }
+
100 }
MOSTAverage::get_average
const amrex::MultiFab * get_average(int lev, int comp) const
Definition: MOSTAverage.H:85
@@ -680,84 +693,84 @@

141 {
-
142  const int zlo = 0;
-
143  const int icomp = 0;
-
144  for (MFIter mfi(*mfs[0]); mfi.isValid(); ++mfi)
-
145  {
-
146  // Get field arrays
-
147  const auto cons_arr = mfs[Vars::cons]->array(mfi);
-
148  const auto velx_arr = mfs[Vars::xvel]->array(mfi);
-
149  const auto vely_arr = mfs[Vars::yvel]->array(mfi);
-
150  const auto eta_arr = eddyDiffs->array(mfi);
-
151  const auto zphys_arr = (z_phys) ? z_phys->const_array(mfi) : Array4<const Real>{};
-
152 
-
153  // Get average arrays
-
154  const auto *const u_mean = m_ma.get_average(lev,0);
-
155  const auto *const v_mean = m_ma.get_average(lev,1);
-
156  const auto *const t_mean = m_ma.get_average(lev,2);
-
157  const auto *const u_mag_mean = m_ma.get_average(lev,3);
-
158 
-
159  const auto um_arr = u_mean->array(mfi);
-
160  const auto vm_arr = v_mean->array(mfi);
-
161  const auto tm_arr = t_mean->array(mfi);
-
162  const auto umm_arr = u_mag_mean->array(mfi);
-
163 
-
164  // Get derived arrays
-
165  const auto u_star_arr = u_star[lev]->array(mfi);
-
166  const auto t_star_arr = t_star[lev]->array(mfi);
-
167  const auto t_surf_arr = t_surf[lev]->array(mfi);
-
168 
-
169  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx)
-
170  {
-
171  const Box& bx = (*mfs[var_idx])[mfi].box();
-
172  auto dest_arr = (*mfs[var_idx])[mfi].array();
-
173 
-
174  if (var_idx == Vars::cons) {
-
175  Box b2d = bx;
-
176  b2d.setBig(2,zlo-1);
-
177  int n = Cons::RhoTheta;
-
178 
-
179  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
180  {
-
181  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
-
182  flux_comp.compute_t_flux(i, j, k, n, icomp, dz,
-
183  cons_arr, velx_arr, vely_arr, eta_arr,
-
184  umm_arr, tm_arr, u_star_arr, t_star_arr, t_surf_arr,
-
185  dest_arr);
-
186  });
-
187 
-
188  } else if (var_idx == Vars::xvel || var_idx == Vars::xmom) {
+
143 {
+
144  const int zlo = 0;
+
145  const int icomp = 0;
+
146  for (MFIter mfi(*mfs[0]); mfi.isValid(); ++mfi)
+
147  {
+
148  // Get field arrays
+
149  const auto cons_arr = mfs[Vars::cons]->array(mfi);
+
150  const auto velx_arr = mfs[Vars::xvel]->array(mfi);
+
151  const auto vely_arr = mfs[Vars::yvel]->array(mfi);
+
152  const auto eta_arr = eddyDiffs->array(mfi);
+
153  const auto zphys_arr = (z_phys) ? z_phys->const_array(mfi) : Array4<const Real>{};
+
154 
+
155  // Get average arrays
+
156  const auto *const u_mean = m_ma.get_average(lev,0);
+
157  const auto *const v_mean = m_ma.get_average(lev,1);
+
158  const auto *const t_mean = m_ma.get_average(lev,2);
+
159  const auto *const u_mag_mean = m_ma.get_average(lev,3);
+
160 
+
161  const auto um_arr = u_mean->array(mfi);
+
162  const auto vm_arr = v_mean->array(mfi);
+
163  const auto tm_arr = t_mean->array(mfi);
+
164  const auto umm_arr = u_mag_mean->array(mfi);
+
165 
+
166  // Get derived arrays
+
167  const auto u_star_arr = u_star[lev]->array(mfi);
+
168  const auto t_star_arr = t_star[lev]->array(mfi);
+
169  const auto t_surf_arr = t_surf[lev]->array(mfi);
+
170 
+
171  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx)
+
172  {
+
173  const Box& bx = (*mfs[var_idx])[mfi].box();
+
174  auto dest_arr = (*mfs[var_idx])[mfi].array();
+
175 
+
176  if (var_idx == Vars::cons) {
+
177  Box b2d = bx;
+
178  b2d.setBig(2,zlo-1);
+
179  int n = Cons::RhoTheta;
+
180 
+
181  ParallelFor(b2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
182  {
+
183  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
+
184  flux_comp.compute_t_flux(i, j, k, n, icomp, dz,
+
185  cons_arr, velx_arr, vely_arr, eta_arr,
+
186  umm_arr, tm_arr, u_star_arr, t_star_arr, t_surf_arr,
+
187  dest_arr);
+
188  });
189 
-
190  Box xb2d = surroundingNodes(bx,0);
-
191  xb2d.setBig(2,zlo-1);
-
192 
-
193  ParallelFor(xb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
194  {
-
195  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
-
196  flux_comp.compute_u_flux(i, j, k, icomp, var_idx, dz,
-
197  cons_arr, velx_arr, vely_arr, eta_arr,
-
198  umm_arr, um_arr, u_star_arr,
-
199  dest_arr);
-
200  });
-
201 
-
202  } else if (var_idx == Vars::yvel || var_idx == Vars::ymom) {
+
190  } else if (var_idx == Vars::xvel || var_idx == Vars::xmom) {
+
191 
+
192  Box xb2d = surroundingNodes(bx,0);
+
193  xb2d.setBig(2,zlo-1);
+
194 
+
195  ParallelFor(xb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
196  {
+
197  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
+
198  flux_comp.compute_u_flux(i, j, k, icomp, var_idx, dz,
+
199  cons_arr, velx_arr, vely_arr, eta_arr,
+
200  umm_arr, um_arr, u_star_arr,
+
201  dest_arr);
+
202  });
203 
-
204  Box yb2d = surroundingNodes(bx,1);
-
205  yb2d.setBig(2,zlo-1);
-
206 
-
207  ParallelFor(yb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
208  {
-
209  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
-
210  flux_comp.compute_v_flux(i, j, k, icomp, var_idx, dz,
-
211  cons_arr, velx_arr, vely_arr, eta_arr,
-
212  umm_arr, vm_arr, u_star_arr,
-
213  dest_arr);
-
214  });
-
215  }
-
216  } // var_idx
-
217  } // mfiter
-
218 }
+
204  } else if (var_idx == Vars::yvel || var_idx == Vars::ymom) {
+
205 
+
206  Box yb2d = surroundingNodes(bx,1);
+
207  yb2d.setBig(2,zlo-1);
+
208 
+
209  ParallelFor(yb2d, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
210  {
+
211  Real dz = (zphys_arr) ? ( zphys_arr(i,j,zlo) - zphys_arr(i,j,zlo-1) ) : dz_no_terrain;
+
212  flux_comp.compute_v_flux(i, j, k, icomp, var_idx, dz,
+
213  cons_arr, velx_arr, vely_arr, eta_arr,
+
214  umm_arr, vm_arr, u_star_arr,
+
215  dest_arr);
+
216  });
+
217  }
+
218  } // var_idx
+
219  } // mfiter
+
220 }
Cons::RhoTheta
@ RhoTheta
Definition: IndexDefines.H:94
Vars::xvel
@ xvel
Definition: IndexDefines.H:81
Vars::xmom
@ xmom
Definition: IndexDefines.H:85
@@ -800,7 +813,7 @@

-
172 { return m_ma.get_average(lev,comp); }
+
198 { return m_ma.get_average(lev,comp); }
Here is the call graph for this function:
@@ -836,7 +849,7 @@

-
169 { return olen[lev].get(); }
+
195 { return olen[lev].get(); }

@@ -863,7 +876,7 @@

-
166 { return t_star[lev].get(); }
+
192 { return t_star[lev].get(); }

@@ -890,7 +903,7 @@

-
163 { return u_star[lev].get(); }
+
189 { return u_star[lev].get(); }

@@ -940,24 +953,24 @@

113 {
-
114  const int zlo = 0;
-
115  if (flux_type == FluxCalcType::DONELAN) {
-
116  donelan_flux flux_comp(zlo);
-
117  compute_most_bcs(lev, mfs, eddyDiffs, z_phys, m_geom[lev].CellSize(2), flux_comp);
-
118  } else {
-
119  moeng_flux flux_comp(zlo);
-
120  compute_most_bcs(lev, mfs, eddyDiffs, z_phys, m_geom[lev].CellSize(2), flux_comp);
-
121  }
-
122 }
+
115 {
+
116  const int zlo = 0;
+
117  if (flux_type == FluxCalcType::DONELAN) {
+
118  donelan_flux flux_comp(zlo);
+
119  compute_most_bcs(lev, mfs, eddyDiffs, z_phys, m_geom[lev].CellSize(2), flux_comp);
+
120  } else {
+
121  moeng_flux flux_comp(zlo);
+
122  compute_most_bcs(lev, mfs, eddyDiffs, z_phys, m_geom[lev].CellSize(2), flux_comp);
+
123  }
+
124 }
ABLMost::compute_most_bcs
void compute_most_bcs(const int lev, const amrex::Vector< amrex::MultiFab * > &mfs, amrex::MultiFab *eddyDiffs, amrex::MultiFab *z_phys, const amrex::Real &dz_no_terrain, const FluxCalc &flux_comp)
-
donelan_flux
Definition: MOSTStress.H:793
+
donelan_flux
Definition: MOSTStress.H:795
moeng_flux
Definition: MOSTStress.H:589
- -

◆ update_fluxes()

+ +

◆ update_fluxes()

@@ -968,6 +981,12 @@

int  lev, + + + + amrex::Real  + cur_time, + @@ -989,49 +1008,51 @@

15 {
-
16  // Compute plane averages for all vars (regardless of flux type)
-
17  m_ma.compute_averages(lev);
-
18 
-
19  // Iterate the fluxes if moeng type
-
20  if (flux_type == FluxCalcType::MOENG) {
-
21  if (theta_type == ThetaCalcType::HEAT_FLUX) {
-
22  if (rough_type == RoughCalcType::CONSTANT) {
-
23  surface_flux most_flux(m_ma.get_zref(), surf_temp_flux);
-
24  compute_fluxes(lev, max_iters, most_flux);
-
25  } else if (rough_type == RoughCalcType::CHARNOCK) {
-
26  surface_flux_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
-
27  compute_fluxes(lev, max_iters, most_flux);
-
28  } else {
-
29  surface_flux_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
-
30  compute_fluxes(lev, max_iters, most_flux);
-
31  }
-
32  } else if (theta_type == ThetaCalcType::SURFACE_TEMPERATURE) {
-
33  if (rough_type == RoughCalcType::CONSTANT) {
-
34  surface_temp most_flux(m_ma.get_zref(), surf_temp_flux);
-
35  compute_fluxes(lev, max_iters, most_flux);
-
36  } else if (rough_type == RoughCalcType::CHARNOCK) {
-
37  surface_temp_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
-
38  compute_fluxes(lev, max_iters, most_flux);
-
39  } else {
-
40  surface_temp_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
-
41  compute_fluxes(lev, max_iters, most_flux);
-
42  }
-
43  } else {
-
44  if (rough_type == RoughCalcType::CONSTANT) {
-
45  adiabatic most_flux(m_ma.get_zref(), surf_temp_flux);
-
46  compute_fluxes(lev, max_iters, most_flux);
-
47  } else if (rough_type == RoughCalcType::CHARNOCK) {
-
48  adiabatic_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
-
49  compute_fluxes(lev, max_iters, most_flux);
-
50  } else {
-
51  adiabatic_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
-
52  compute_fluxes(lev, max_iters, most_flux);
-
53  }
-
54  } // theta flux
-
55  } // Moeng flux
-
56 }
-
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux)
Definition: ABLMost.cpp:68
+
16 {
+
17  // Compute plane averages for all vars (regardless of flux type)
+
18  m_ma.compute_averages(lev);
+
19 
+
20  // Iterate the fluxes if moeng type
+
21  if (flux_type == FluxCalcType::MOENG) {
+
22  if (theta_type == ThetaCalcType::HEAT_FLUX) {
+
23  if (rough_type == RoughCalcType::CONSTANT) {
+
24  surface_flux most_flux(m_ma.get_zref(), surf_temp_flux);
+
25  compute_fluxes(lev, max_iters, most_flux);
+
26  } else if (rough_type == RoughCalcType::CHARNOCK) {
+
27  surface_flux_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
+
28  compute_fluxes(lev, max_iters, most_flux);
+
29  } else {
+
30  surface_flux_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
+
31  compute_fluxes(lev, max_iters, most_flux);
+
32  }
+
33  } else if (theta_type == ThetaCalcType::SURFACE_TEMPERATURE) {
+
34  update_surf_temp(cur_time);
+
35  if (rough_type == RoughCalcType::CONSTANT) {
+
36  surface_temp most_flux(m_ma.get_zref(), surf_temp_flux);
+
37  compute_fluxes(lev, max_iters, most_flux);
+
38  } else if (rough_type == RoughCalcType::CHARNOCK) {
+
39  surface_temp_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
+
40  compute_fluxes(lev, max_iters, most_flux);
+
41  } else {
+
42  surface_temp_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
+
43  compute_fluxes(lev, max_iters, most_flux);
+
44  }
+
45  } else {
+
46  if (rough_type == RoughCalcType::CONSTANT) {
+
47  adiabatic most_flux(m_ma.get_zref(), surf_temp_flux);
+
48  compute_fluxes(lev, max_iters, most_flux);
+
49  } else if (rough_type == RoughCalcType::CHARNOCK) {
+
50  adiabatic_charnock most_flux(m_ma.get_zref(), surf_temp_flux, cnk_a);
+
51  compute_fluxes(lev, max_iters, most_flux);
+
52  } else {
+
53  adiabatic_mod_charnock most_flux(m_ma.get_zref(), surf_temp_flux, depth);
+
54  compute_fluxes(lev, max_iters, most_flux);
+
55  }
+
56  } // theta flux
+
57  } // Moeng flux
+
58 }
+
ABLMost::update_surf_temp
void update_surf_temp(amrex::Real cur_time)
Definition: ABLMost.H:141
+
ABLMost::compute_fluxes
void compute_fluxes(const int &lev, const int &max_iters, const FluxIter &most_flux)
Definition: ABLMost.cpp:70
MOSTAverage::get_zref
amrex::Real get_zref() const
Definition: MOSTAverage.H:88
MOSTAverage::compute_averages
void compute_averages(int lev)
Definition: MOSTAverage.cpp:506
adiabatic_charnock
Definition: MOSTStress.H:108
@@ -1085,7 +1106,7 @@

-
160  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim); }
+
186  { m_ma.update_field_ptrs(lev,vars_old,Theta_prim); }
MOSTAverage::update_field_ptrs
void update_field_ptrs(int lev, amrex::Vector< amrex::Vector< amrex::MultiFab >> &vars_old, amrex::Vector< std::unique_ptr< amrex::MultiFab >> &Theta_prim)
Definition: MOSTAverage.cpp:179
Here is the call graph for this function:
@@ -1097,6 +1118,45 @@

+

◆ update_surf_temp()

+ +
+
+ + + + + +
+ + + + + + + + +
void ABLMost::update_surf_temp (amrex::Real cur_time)
+ 		+inline
+
+
142  {
+
143  if (surf_heating_rate != 0) {
+
144  int nlevs = m_geom.size();
+
145  for (int lev = 0; lev < nlevs; lev++)
+
146  {
+
147  t_surf[lev]->setVal(surf_temp + surf_heating_rate*cur_time);
+
148  amrex::Print() << "Surface temp at t=" << cur_time
+
149  << ": "
+
150  << surf_temp + surf_heating_rate*cur_time
+
151  << std::endl;
+
152  }
+
153  }
+
154  }
+

Member Data Documentation

@@ -1184,7 +1244,7 @@

-

Referenced by ABLMost().

+

Referenced by ABLMost(), and update_surf_temp().

@@ -1250,6 +1310,30 @@

Referenced by ABLMost().

+

+
+ +

◆ surf_heating_rate

+ +
+
+ + + + + +
+ + + + +
amrex::Real ABLMost::surf_heating_rate {0}
+ 		+private
+
+ +

Referenced by ABLMost(), and update_surf_temp().

+
@@ -1272,7 +1356,7 @@

-

Referenced by ABLMost().

+

Referenced by ABLMost(), and update_surf_temp().

@@ -1344,7 +1428,7 @@

-

Referenced by ABLMost().

+

Referenced by ABLMost(), and update_surf_temp().

diff --git a/classABLMost.js b/classABLMost.js index 8fe52ec6d3..9ab8af83d2 100644 --- a/classABLMost.js +++ b/classABLMost.js @@ -23,8 +23,9 @@ var classABLMost = [ "get_t_star", "classABLMost.html#adf7b9418f17e349784d282b56c7ea77d", null ], [ "get_u_star", "classABLMost.html#a3a1d0ba425c89c20e1789a0dc508177a", null ], [ "impose_most_bcs", "classABLMost.html#a60a193596c37bb42872bf5c954ed20e4", null ], - [ "update_fluxes", "classABLMost.html#a29162a794cb557fa51b781ddcb684f84", null ], + [ "update_fluxes", "classABLMost.html#ab9fe02ab50a57a7eaffeeb1062cca628", null ], [ "update_mac_ptrs", "classABLMost.html#a522d043999bedde504a36d307ecff7b7", null ], + [ "update_surf_temp", "classABLMost.html#a1f0c0852f8677e0489968d486c96292b", null ], [ "cnk_a", "classABLMost.html#a75310e9079ee238a932900feaad85ac5", null ], [ "depth", "classABLMost.html#a38ed37dd984fcc7be3b5ae04b7272459", null ], [ "flux_type", "classABLMost.html#ad837d92390012682056ffac0b5f9a8f9", null ], @@ -32,6 +33,7 @@ var classABLMost = [ "m_ma", "classABLMost.html#a466bfcda8ae4337d9c8781ab28e3f6fe", null ], [ "olen", "classABLMost.html#a0d6aa5a113a45ae1e56c0284241cfd01", null ], [ "rough_type", "classABLMost.html#a96fe21af762c91f2e3aa360f4c2e9a8e", null ], + [ "surf_heating_rate", "classABLMost.html#a39402ac3794b9a218289cd0d4adec670", null ], [ "surf_temp", "classABLMost.html#a73621a1b429f2e910a29adac72b7c581", null ], [ "surf_temp_flux", "classABLMost.html#a98390481d302c2a2c7346bf2328305a8", null ], [ "t_star", "classABLMost.html#ac9d90016f196c3861d225132e8b6a921", null ], diff --git a/classABLMost__coll__graph.md5 b/classABLMost__coll__graph.md5 index a1b08f890e..961e71883a 100644 --- a/classABLMost__coll__graph.md5 +++ b/classABLMost__coll__graph.md5 @@ -1 +1 @@ -1a3dde7494b2f00396886f1e2267c5aa \ No newline at end of file +bbaa872a6e94cb62fe1c9f4ac46c56db \ No newline at end of file diff --git a/classABLMost__coll__graph.png b/classABLMost__coll__graph.png index 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ERF::Tau31_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau31_lev
Definition: ERF.H:544
ERF::mapfac_m
amrex::Vector< std::unique_ptr< amrex::MultiFab > > mapfac_m
Definition: ERF.H:567
ERF::SFS_hfx1_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > SFS_hfx1_lev
Definition: ERF.H:550
-
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:843
+
ERF::ReadParameters
void ReadParameters()
Definition: ERF.cpp:861
ERF::flux_registers
amrex::Vector< amrex::FluxRegister * > flux_registers
Definition: ERF.H:577
ERF::z_phys_nd_src
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_nd_src
Definition: ERF.H:559
ERF::detJ_cc
amrex::Vector< std::unique_ptr< amrex::MultiFab > > detJ_cc
Definition: ERF.H:557
ERF::z_phys_cc
amrex::Vector< std::unique_ptr< amrex::MultiFab > > z_phys_cc
Definition: ERF.H:556
ERF::eddyDiffs_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > eddyDiffs_lev
Definition: ERF.H:546
-
ERF::solverChoice
static SolverChoice solverChoice
Definition: ERF.H:671
+
ERF::solverChoice
static SolverChoice solverChoice
Definition: ERF.H:676
ERF::base_state_new
amrex::Vector< amrex::MultiFab > base_state_new
Definition: ERF.H:574
ERF::dt_mri_ratio
amrex::Vector< long > dt_mri_ratio
Definition: ERF.H:506
ERF::base_state
amrex::Vector< amrex::MultiFab > base_state
Definition: ERF.H:573
@@ -879,10 +879,10 @@

ERF::Tau22_lev
amrex::Vector< std::unique_ptr< amrex::MultiFab > > Tau22_lev
Definition: ERF.H:542
Vars::NumTypes
@ NumTypes
Definition: IndexDefines.H:84
amrex_probinit
std::unique_ptr< ProblemBase > amrex_probinit(const amrex_real *problo, const amrex_real *probhi)
-
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:255
-
SolverChoice::dz0
amrex::Real dz0
Definition: DataStruct.H:284
-
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: DataStruct.H:282
-
SolverChoice::zsurf
amrex::Real zsurf
Definition: DataStruct.H:283
+
SolverChoice::use_terrain
bool use_terrain
Definition: DataStruct.H:261
+
SolverChoice::dz0
amrex::Real dz0
Definition: DataStruct.H:290
+
SolverChoice::grid_stretching_ratio
amrex::Real grid_stretching_ratio
Definition: DataStruct.H:288
+
SolverChoice::zsurf
amrex::Real zsurf
Definition: DataStruct.H:289
Here is the call graph for this function:
@@ -1062,7 +1062,7 @@

42  // NOTE: std::swap above causes the field ptrs to be out of date.

43  // Reassign the field ptrs for MAC avg computation.
44  m_most->update_mac_ptrs(lev, vars_old, Theta_prim);
-
45  m_most->update_fluxes(lev);
+
45  m_most->update_fluxes(lev, time);
46  }
47  }
48 
@@ -1166,8 +1166,8 @@

PBLType::MYNN25
@ MYNN25
VelocityToMomentum
void VelocityToMomentum(const amrex::MultiFab &xvel_in, const amrex::IntVect &xvel_ngrow, const amrex::MultiFab &yvel_in, const amrex::IntVect &yvel_ngrow, const amrex::MultiFab &zvel_in, const amrex::IntVect &zvel_ngrow, const amrex::MultiFab &cons_in, amrex::MultiFab &xmom_out, amrex::MultiFab &ymom_out, amrex::MultiFab &zmom_out, bool l_use_ndiff)
-
ERF::m_most
std::unique_ptr< ABLMost > m_most
Definition: ERF.H:757
-
ERF::use_tracer_particles
static bool use_tracer_particles
Definition: ERF.H:676
+
ERF::m_most
std::unique_ptr< ABLMost > m_most
Definition: ERF.H:762
+
ERF::use_tracer_particles
static bool use_tracer_particles
Definition: ERF.H:681
ERF::advance_dycore
void advance_dycore(int level, amrex::MultiFab &cons_old, amrex::MultiFab &cons_new, amrex::MultiFab &xvel_old, amrex::MultiFab &yvel_old, amrex::MultiFab &zvel_old, amrex::MultiFab &xvel_new, amrex::MultiFab &yvel_new, amrex::MultiFab &zvel_new, amrex::MultiFab &xmom_old, amrex::MultiFab &ymom_old, amrex::MultiFab &zmom_old, amrex::MultiFab &xmom_new, amrex::MultiFab &ymom_new, amrex::MultiFab &zmom_new, amrex::MultiFab &xmom_crse, amrex::MultiFab &ymom_crse, amrex::MultiFab &zmom_crse, amrex::MultiFab &source, amrex::MultiFab &buoyancy, amrex::Geometry fine_geom, amrex::Real dt, amrex::Real time, amrex::InterpFaceRegister *ifr)
Definition: ERF_advance_dycore.cpp:46
ERF::FillPatch
void FillPatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mf, bool fillset=true)
Definition: ERF_FillPatch.cpp:20
ERF::phys_bc_type
amrex::GpuArray< ERF_BC, AMREX_SPACEDIM *2 > phys_bc_type
Definition: ERF.H:595
@@ -1177,9 +1177,9 @@

Vars::cons
@ cons
Definition: IndexDefines.H:80
Vars::zvel
@ zvel
Definition: IndexDefines.H:83
Vars::yvel
@ yvel
Definition: IndexDefines.H:82
-
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:278
-
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:300
-
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:244
+
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:284
+
SolverChoice::use_NumDiff
bool use_NumDiff
Definition: DataStruct.H:306
+
SolverChoice::turbChoice
amrex::Vector< TurbChoice > turbChoice
Definition: DataStruct.H:250
Here is the call graph for this function:
@@ -1672,16 +1672,16 @@

ERF::FPr_u
amrex::Vector< ERFFillPatcher > FPr_u
Definition: ERF.H:537

ERF::FPr_v
amrex::Vector< ERFFillPatcher > FPr_v
Definition: ERF.H:538
ERF::FPr_c
amrex::Vector< ERFFillPatcher > FPr_c
Definition: ERF.H:536
-
ERF::d_rayleigh_wbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_wbar
Definition: ERF.H:735
-
ERF::verbose
static int verbose
Definition: ERF.H:673
-
ERF::d_rayleigh_thetabar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_thetabar
Definition: ERF.H:736
+
ERF::d_rayleigh_wbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_wbar
Definition: ERF.H:740
+
ERF::verbose
static int verbose
Definition: ERF.H:678
+
ERF::d_rayleigh_thetabar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_thetabar
Definition: ERF.H:741
ERF::domain_bcs_type
amrex::Vector< amrex::BCRec > domain_bcs_type
Definition: ERF.H:582
-
ERF::d_rayleigh_vbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_vbar
Definition: ERF.H:734
+
ERF::d_rayleigh_vbar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_vbar
Definition: ERF.H:739
ERF::domain_bcs_type_d
amrex::Gpu::DeviceVector< amrex::BCRec > domain_bcs_type_d
Definition: ERF.H:583
-
ERF::d_rayleigh_tau
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_tau
Definition: ERF.H:732
+
ERF::d_rayleigh_tau
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_tau
Definition: ERF.H:737
ERF::FPr_w
amrex::Vector< ERFFillPatcher > FPr_w
Definition: ERF.H:539
ERF::fixed_mri_dt_ratio
static int fixed_mri_dt_ratio
Definition: ERF.H:622
-
ERF::d_rayleigh_ubar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_ubar
Definition: ERF.H:733
+
ERF::d_rayleigh_ubar
amrex::Vector< amrex::Gpu::DeviceVector< amrex::Real > > d_rayleigh_ubar
Definition: ERF.H:738
MRISplitIntegrator
Definition: ERF_MRI.H:12
MRISplitIntegrator::advance
amrex::Real advance(T &S_old, T &S_new, amrex::Real time, const amrex::Real time_step) override
Definition: ERF_MRI.H:173
MRISplitIntegrator::set_slow_rhs_inc
void set_slow_rhs_inc(std::function< void(T &, T &, T &, T &, const amrex::Real, const amrex::Real, const amrex::Real, const int)> F)
Definition: ERF_MRI.H:127
@@ -1699,11 +1699,11 @@

IntVar::xmom
@ xmom
Definition: IndexDefines.H:183
DiffChoice
Definition: DiffStruct.H:19
DiffChoice::molec_diff_type
MolecDiffType molec_diff_type
Definition: DiffStruct.H:76
-
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:266
-
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:242
-
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:277
-
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:251
-
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:307
+
SolverChoice::use_rayleigh_damping
bool use_rayleigh_damping
Definition: DataStruct.H:272
+
SolverChoice::diffChoice
DiffChoice diffChoice
Definition: DataStruct.H:248
+
SolverChoice::gravity
amrex::Real gravity
Definition: DataStruct.H:283
+
SolverChoice::incompressible
int incompressible
Definition: DataStruct.H:257
+
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:313
TurbChoice
Definition: TurbStruct.H:16
TurbChoice::pbl_type
PBLType pbl_type
Definition: TurbStruct.H:272
TurbChoice::les_type
LESType les_type
Definition: TurbStruct.H:249
@@ -1773,15 +1773,15 @@

-
1188 {
-
1189  AMREX_ALWAYS_ASSERT(coupling_type == "TwoWay");
-
1190  for (int lev = finest_level-1; lev >= 0; --lev)
-
1191  {
-
1192  AverageDownTo(lev);
-
1193  }
-
1194 }
-
ERF::AverageDownTo
void AverageDownTo(int crse_lev)
Definition: ERF.cpp:1198
-
ERF::coupling_type
static std::string coupling_type
Definition: ERF.H:679
+
1206 {
+
1207  AMREX_ALWAYS_ASSERT(coupling_type == "TwoWay");
+
1208  for (int lev = finest_level-1; lev >= 0; --lev)
+
1209  {
+
1210  AverageDownTo(lev);
+
1211  }
+
1212 }
+
ERF::AverageDownTo
void AverageDownTo(int crse_lev)
Definition: ERF.cpp:1216
+
ERF::coupling_type
static std::string coupling_type
Definition: ERF.H:684
@@ -1808,18 +1808,18 @@

-
1199 {
-
1200  AMREX_ALWAYS_ASSERT(coupling_type == "TwoWay");
-
1201  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx) {
-
1202  const BoxArray& ba(vars_new[crse_lev][var_idx].boxArray());
-
1203  if (ba[0].type() == IntVect::TheZeroVector())
-
1204  amrex::average_down(vars_new[crse_lev+1][var_idx], vars_new[crse_lev][var_idx],
-
1205  0, vars_new[crse_lev][var_idx].nComp(), refRatio(crse_lev));
-
1206  else // We assume the arrays are face-centered if not cell-centered
-
1207  amrex::average_down_faces(vars_new[crse_lev+1][var_idx], vars_new[crse_lev][var_idx],
-
1208  refRatio(crse_lev),geom[crse_lev]);
-
1209  }
-
1210 }
+
1217 {
+
1218  AMREX_ALWAYS_ASSERT(coupling_type == "TwoWay");
+
1219  for (int var_idx = 0; var_idx < Vars::NumTypes; ++var_idx) {
+
1220  const BoxArray& ba(vars_new[crse_lev][var_idx].boxArray());
+
1221  if (ba[0].type() == IntVect::TheZeroVector())
+
1222  amrex::average_down(vars_new[crse_lev+1][var_idx], vars_new[crse_lev][var_idx],
+
1223  0, vars_new[crse_lev][var_idx].nComp(), refRatio(crse_lev));
+
1224  else // We assume the arrays are face-centered if not cell-centered
+
1225  amrex::average_down_faces(vars_new[crse_lev+1][var_idx], vars_new[crse_lev][var_idx],
+
1226  refRatio(crse_lev),geom[crse_lev]);
+
1227  }
+
1228 }
@@ -1868,7 +1868,7 @@

315 
316  return fine_mask;
317 }
-
ERF::fine_mask
amrex::MultiFab fine_mask
Definition: ERF.H:768
+
ERF::fine_mask
amrex::MultiFab fine_mask
Definition: ERF.H:773
@@ -2006,47 +2006,47 @@

-
775  {
-
776  if (use_num_diff)
-
777  {
-
778  return 3;
-
779  } else {
-
780  if (
-
781  (advChoice.dycore_horiz_adv_type == AdvType::Centered_6th)
-
782  || (advChoice.dycore_vert_adv_type == AdvType::Centered_6th)
-
783 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
784  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
-
785  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
-
786 #endif
-
787  || (advChoice.dryscal_horiz_adv_type == AdvType::Centered_6th)
-
788  || (advChoice.dryscal_vert_adv_type == AdvType::Centered_6th) )
-
789  { return 3; }
-
790  else if (
-
791  (advChoice.dycore_horiz_adv_type == AdvType::Upwind_5th)
-
792  || (advChoice.dycore_vert_adv_type == AdvType::Upwind_5th)
-
793 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
794  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
-
795  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
-
796 #endif
-
797  || (advChoice.dryscal_horiz_adv_type == AdvType::Upwind_5th)
-
798  || (advChoice.dryscal_vert_adv_type == AdvType::Upwind_5th) )
-
799  { return 3; }
-
800  else if (
-
801  (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5)
-
802  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5)
-
803 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
-
804  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5)
-
805  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5)
-
806  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5Z)
-
807  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5Z)
-
808 #endif
-
809  || (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5Z)
-
810  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5Z) )
-
811  { return 3; }
-
812  else
-
813  { return 2; }
-
814  }
-
815  }
+
780  {
+
781  if (use_num_diff)
+
782  {
+
783  return 3;
+
784  } else {
+
785  if (
+
786  (advChoice.dycore_horiz_adv_type == AdvType::Centered_6th)
+
787  || (advChoice.dycore_vert_adv_type == AdvType::Centered_6th)
+
788 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
789  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
+
790  || (advChoice.moistscal_horiz_adv_type == AdvType::Centered_6th)
+
791 #endif
+
792  || (advChoice.dryscal_horiz_adv_type == AdvType::Centered_6th)
+
793  || (advChoice.dryscal_vert_adv_type == AdvType::Centered_6th) )
+
794  { return 3; }
+
795  else if (
+
796  (advChoice.dycore_horiz_adv_type == AdvType::Upwind_5th)
+
797  || (advChoice.dycore_vert_adv_type == AdvType::Upwind_5th)
+
798 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
799  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
+
800  || (advChoice.moistscal_horiz_adv_type == AdvType::Upwind_5th)
+
801 #endif
+
802  || (advChoice.dryscal_horiz_adv_type == AdvType::Upwind_5th)
+
803  || (advChoice.dryscal_vert_adv_type == AdvType::Upwind_5th) )
+
804  { return 3; }
+
805  else if (
+
806  (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5)
+
807  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5)
+
808 #if defined(ERF_USE_MOISTURE) or defined(ERF_USE_WARM_NO_PRECIP)
+
809  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5)
+
810  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5)
+
811  || (advChoice.moistscal_horiz_adv_type == AdvType::Weno_5Z)
+
812  || (advChoice.moistscal_vert_adv_type == AdvType::Weno_5Z)
+
813 #endif
+
814  || (advChoice.dryscal_horiz_adv_type == AdvType::Weno_5Z)
+
815  || (advChoice.dryscal_vert_adv_type == AdvType::Weno_5Z) )
+
816  { return 3; }
+
817  else
+
818  { return 2; }
+
819  }
+
820  }
AdvType::Centered_6th
@ Centered_6th
@@ -2081,28 +2081,28 @@

-
1214 {
-
1215  auto& fine_new = vars_new[lev];
-
1216  auto& crse_new = vars_new[lev-1];
-
1217  auto& ba_fine = fine_new[Vars::cons].boxArray();
-
1218  auto& ba_crse = crse_new[Vars::cons].boxArray();
-
1219  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
-
1220  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
-
1221 
-
1222  // NOTE: crse-fine set/relaxation only done on Rho/RhoTheta
-
1223  FPr_c.emplace_back(ba_fine, dm_fine, geom[lev] ,
-
1224  ba_crse, dm_crse, geom[lev-1],
-
1225  -cf_width, -cf_set_width, 2, &cell_cons_interp);
-
1226  FPr_u.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
-
1227  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
-
1228  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1229  FPr_v.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
-
1230  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
-
1231  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1232  FPr_w.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
-
1233  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
-
1234  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1235 }
+
1232 {
+
1233  auto& fine_new = vars_new[lev];
+
1234  auto& crse_new = vars_new[lev-1];
+
1235  auto& ba_fine = fine_new[Vars::cons].boxArray();
+
1236  auto& ba_crse = crse_new[Vars::cons].boxArray();
+
1237  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
+
1238  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
+
1239 
+
1240  // NOTE: crse-fine set/relaxation only done on Rho/RhoTheta
+
1241  FPr_c.emplace_back(ba_fine, dm_fine, geom[lev] ,
+
1242  ba_crse, dm_crse, geom[lev-1],
+
1243  -cf_width, -cf_set_width, 2, &cell_cons_interp);
+
1244  FPr_u.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
+
1245  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
+
1246  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1247  FPr_v.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
+
1248  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
+
1249  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1250  FPr_w.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
+
1251  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
+
1252  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1253 }
ERF::cf_set_width
int cf_set_width
Definition: ERF.H:535
ERF::cf_width
int cf_width
Definition: ERF.H:534
@@ -2131,10 +2131,10 @@

-
827  {
-
828  return *datalog[i];
-
829  }
-
ERF::datalog
amrex::Vector< std::unique_ptr< std::fstream > > datalog
Definition: ERF.H:957
+
832  {
+
833  return *datalog[i];
+
834  }
+
ERF::datalog
amrex::Vector< std::unique_ptr< std::fstream > > datalog
Definition: ERF.H:962

@@ -2163,8 +2163,8 @@

The filename of the ith datalog file.

-
969 { return datalogname[i]; }
-
ERF::datalogname
amrex::Vector< std::string > datalogname
Definition: ERF.H:958
+
974 { return datalogname[i]; }
+
ERF::datalogname
amrex::Vector< std::string > datalogname
Definition: ERF.H:963

@@ -2191,28 +2191,28 @@

-
1239 {
-
1240  auto& fine_new = vars_new[lev];
-
1241  auto& crse_new = vars_new[lev-1];
-
1242  auto& ba_fine = fine_new[Vars::cons].boxArray();
-
1243  auto& ba_crse = crse_new[Vars::cons].boxArray();
-
1244  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
-
1245  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
-
1246 
-
1247  // NOTE: crse-fine set/relaxation only done on Rho/RhoTheta
-
1248  FPr_c[lev-1].Define(ba_fine, dm_fine, geom[lev] ,
-
1249  ba_crse, dm_crse, geom[lev-1],
-
1250  -cf_width, -cf_set_width, 2, &cell_cons_interp);
-
1251  FPr_u[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
-
1252  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
-
1253  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1254  FPr_v[lev-1].Define(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
-
1255  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
-
1256  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1257  FPr_w[lev-1].Define(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
-
1258  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
-
1259  -cf_width, -cf_set_width, 1, &face_linear_interp);
-
1260 }
+
1257 {
+
1258  auto& fine_new = vars_new[lev];
+
1259  auto& crse_new = vars_new[lev-1];
+
1260  auto& ba_fine = fine_new[Vars::cons].boxArray();
+
1261  auto& ba_crse = crse_new[Vars::cons].boxArray();
+
1262  auto& dm_fine = fine_new[Vars::cons].DistributionMap();
+
1263  auto& dm_crse = crse_new[Vars::cons].DistributionMap();
+
1264 
+
1265  // NOTE: crse-fine set/relaxation only done on Rho/RhoTheta
+
1266  FPr_c[lev-1].Define(ba_fine, dm_fine, geom[lev] ,
+
1267  ba_crse, dm_crse, geom[lev-1],
+
1268  -cf_width, -cf_set_width, 2, &cell_cons_interp);
+
1269  FPr_u[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev] ,
+
1270  convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],
+
1271  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1272  FPr_v[lev-1].Define(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev] ,
+
1273  convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],
+
1274  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1275  FPr_w[lev-1].Define(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev] ,
+
1276  convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],
+
1277  -cf_width, -cf_set_width, 1, &face_linear_interp);
+
1278 }

@@ -2886,7 +2886,7 @@

getExnergivenP
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real getExnergivenP(const amrex::Real P, const amrex::Real rdOcp)
Definition: EOS.H:95
p_0
constexpr amrex::Real p_0
Definition: ERF_Constants.H:17
MicVar::pres
@ pres
Definition: Microphysics.H:34
-
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: DataStruct.H:279
+
SolverChoice::rdOcp
amrex::Real rdOcp
Definition: DataStruct.H:285
Here is the call graph for this function:
@@ -2992,7 +2992,7 @@

51  ref_tags[j](tags,mf.get(),clearval,tagval,time,level,geom[level]);

52  }
53 }
-
ERF::ref_tags
static amrex::Vector< amrex::AMRErrorTag > ref_tags
Definition: ERF.H:762
+
ERF::ref_tags
static amrex::Vector< amrex::AMRErrorTag > ref_tags
Definition: ERF.H:767
derived::erf_derscalar
void erf_derscalar(const amrex::Box &bx, amrex::FArrayBox &derfab, int, int, const amrex::FArrayBox &datfab, const amrex::Geometry &, amrex::Real, const int *, const int)
Definition: Derive.cpp:180
derived::erf_derpres
void erf_derpres(const amrex::Box &bx, amrex::FArrayBox &derfab, int, int, const amrex::FArrayBox &datfab, const amrex::Geometry &, amrex::Real, const int *, const int)
Definition: Derive.cpp:57
derived::erf_dertheta
void erf_dertheta(const amrex::Box &bx, amrex::FArrayBox &derfab, int, int, const amrex::FArrayBox &datfab, const amrex::Geometry &, amrex::Real, const int *, const int)
Definition: Derive.cpp:158
@@ -3179,13 +3179,13 @@

181  }
182 }
Gamma
constexpr amrex::Real Gamma
Definition: ERF_Constants.H:18
-
ERF::dz_min
amrex::Real dz_min
Definition: ERF.H:770
+
ERF::dz_min
amrex::Real dz_min
Definition: ERF.H:775
ERF::fixed_dt
static amrex::Real fixed_dt
Definition: ERF.H:620
ERF::fixed_fast_dt
static amrex::Real fixed_fast_dt
Definition: ERF.H:621
ERF::cfl
static amrex::Real cfl
Definition: ERF.H:615
MicVar::rho
@ rho
Definition: Microphysics.H:33
-
SolverChoice::no_substepping
int no_substepping
Definition: DataStruct.H:249
-
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: DataStruct.H:250
+
SolverChoice::no_substepping
int no_substepping
Definition: DataStruct.H:255
+
SolverChoice::force_stage1_single_substep
int force_stage1_single_substep
Definition: DataStruct.H:256
Here is the call graph for this function:
@@ -3305,10 +3305,10 @@

ERF::plot_int_2
int plot_int_2
Definition: ERF.H:632

ERF::last_plot_file_step_1
int last_plot_file_step_1
Definition: ERF.H:597
ERF::m_bc_extdir_vals
amrex::Array< amrex::Array< amrex::Real, AMREX_SPACEDIM *2 >, AMREX_SPACEDIM+NVAR > m_bc_extdir_vals
Definition: ERF.H:589
-
ERF::input_bndry_planes
static int input_bndry_planes
Definition: ERF.H:721
+
ERF::input_bndry_planes
static int input_bndry_planes
Definition: ERF.H:726
ERF::plot_int_1
int plot_int_1
Definition: ERF.H:631
ERF::WriteCheckpointFile
void WriteCheckpointFile() const
Definition: Checkpoint.cpp:23
-
ERF::m_r2d
std::unique_ptr< ReadBndryPlanes > m_r2d
Definition: ERF.H:756
+
ERF::m_r2d
std::unique_ptr< ReadBndryPlanes > m_r2d
Definition: ERF.H:761
ERF::timeStep
void timeStep(int lev, amrex::Real time, int iteration)
Definition: ERF_TimeStep.cpp:17

Referenced by main().

@@ -3612,7 +3612,7 @@

null_bc
PhysBCFunctNoOp null_bc
Definition: ERF_FillPatch.cpp:9
NVAR
#define NVAR
Definition: IndexDefines.H:26
ERF::FillCoarsePatch
void FillCoarsePatch(int lev, amrex::Real time, const amrex::Vector< amrex::MultiFab * > &mfs)
Definition: ERF_FillPatch.cpp:279
-
ERF::init_type
static std::string init_type
Definition: ERF.H:689
+
ERF::init_type
static std::string init_type
Definition: ERF.H:694
Vars::xmom
@ xmom
Definition: IndexDefines.H:85
Vars::ymom
@ ymom
Definition: IndexDefines.H:86
Vars::zmom
@ zmom
Definition: IndexDefines.H:87
@@ -3954,9 +3954,9 @@

-
820  {
-
821  return *flux_registers[lev];
-
822  }
+
825  {
+
826  return *flux_registers[lev];
+
827  }
@@ -3982,20 +3982,20 @@

-
897  {
-
898  int numCores = amrex::ParallelDescriptor::NProcs();
-
899 #ifdef _OPENMP
-
900  numCores = numCores * omp_get_max_threads();
-
901 #endif
-
902 
-
903  amrex::Real T =
-
904  numCores * (amrex::ParallelDescriptor::second() - startCPUTime) +
-
905  previousCPUTimeUsed;
-
906 
-
907  return T;
-
908  }
-
ERF::startCPUTime
static amrex::Real startCPUTime
Definition: ERF.H:892
-
ERF::previousCPUTimeUsed
static amrex::Real previousCPUTimeUsed
Definition: ERF.H:893
+
902  {
+
903  int numCores = amrex::ParallelDescriptor::NProcs();
+
904 #ifdef _OPENMP
+
905  numCores = numCores * omp_get_max_threads();
+
906 #endif
+
907 
+
908  amrex::Real T =
+
909  numCores * (amrex::ParallelDescriptor::second() - startCPUTime) +
+
910  previousCPUTimeUsed;
+
911 
+
912  return T;
+
913  }
+
ERF::startCPUTime
static amrex::Real startCPUTime
Definition: ERF.H:897
+
ERF::previousCPUTimeUsed
static amrex::Real previousCPUTimeUsed
Definition: ERF.H:898
WRFBdyVars::T
@ T
Definition: IndexDefines.H:70

Referenced by writeJobInfo().

@@ -4928,8 +4928,8 @@

init_bx_scalars_from_input_sounding_hse
void init_bx_scalars_from_input_sounding_hse(const amrex::Box &bx, amrex::Array4< amrex::Real > const &state, amrex::Array4< amrex::Real > const &r_hse_arr, amrex::Array4< amrex::Real > const &p_hse_arr, amrex::Array4< amrex::Real > const &pi_hse_arr, amrex::GeometryData const &geomdata, amrex::Real l_gravity, amrex::Real l_rdOcp, InputSoundingData const &inputSoundingData)
Definition: ERF_init_from_input_sounding.cpp:170

init_bx_velocities_from_input_sounding
void init_bx_velocities_from_input_sounding(const amrex::Box &bx, amrex::Array4< amrex::Real > const &x_vel, amrex::Array4< amrex::Real > const &y_vel, amrex::Array4< amrex::Real > const &z_vel, amrex::GeometryData const &geomdata, InputSoundingData const &inputSoundingData)
Definition: ERF_init_from_input_sounding.cpp:258
init_bx_scalars_from_input_sounding
void init_bx_scalars_from_input_sounding(const amrex::Box &bx, amrex::Array4< amrex::Real > const &state, amrex::GeometryData const &geomdata, InputSoundingData const &inputSoundingData)
Definition: ERF_init_from_input_sounding.cpp:111
-
ERF::init_sounding_ideal
static bool init_sounding_ideal
Definition: ERF.H:704
-
ERF::input_sounding_file
static std::string input_sounding_file
Definition: ERF.H:700
+
ERF::init_sounding_ideal
static bool init_sounding_ideal
Definition: ERF.H:709
+
ERF::input_sounding_file
static std::string input_sounding_file
Definition: ERF.H:705
ERF::input_sounding_data
InputSoundingData input_sounding_data
Definition: ERF.H:467
InputSoundingData::read_from_file
void read_from_file(const std::string input_sounding_file, amrex::Geometry const &geom)
Definition: InputSoundingData.H:24
InputSoundingData::calc_rho_p
void calc_rho_p()
Definition: InputSoundingData.H:124
@@ -4977,71 +4977,71 @@

-
775 {
-
776  t_new[lev] = time;
-
777  t_old[lev] = time - 1.e200;
-
778 
-
779  auto& lev_new = vars_new[lev];
-
780  auto& lev_old = vars_old[lev];
-
781 
-
782  // Loop over grids at this level to initialize our grid data
-
783  lev_new[Vars::cons].setVal(0.0); lev_old[Vars::cons].setVal(0.0);
-
784  lev_new[Vars::xvel].setVal(0.0); lev_old[Vars::xvel].setVal(0.0);
-
785  lev_new[Vars::yvel].setVal(0.0); lev_old[Vars::yvel].setVal(0.0);
-
786  lev_new[Vars::zvel].setVal(0.0); lev_old[Vars::zvel].setVal(0.0);
-
787 
-
788  // Initialize background flow (optional)
-
789  if (init_type == "input_sounding") {
-
790  // The base state is initialized by integrating vertically through the
-
791  // input sounding, if the init_sounding_ideal flag is set; otherwise
-
792  // it is set by initHSE()
-
793  init_from_input_sounding(lev);
-
794  if (!init_sounding_ideal) initHSE();
-
795 
-
796 #ifdef ERF_USE_NETCDF
-
797  } else if (init_type == "ideal" || init_type == "real") {
-
798  // The base state is initialized from WRF wrfinput data, output by
-
799  // ideal.exe or real.exe
-
800  init_from_wrfinput(lev);
-
801  if (init_type == "ideal") initHSE();
-
802 
-
803  } else if (init_type == "metgrid") {
-
804  // The base state is initialized from data output by WPS metgrid;
-
805  // we will rebalance after interpolation
-
806  init_from_metgrid(lev);
-
807 #endif
-
808  } else if (init_type == "uniform") {
-
809  // Initialize a uniform background field and base state based on the
-
810  // problem-specified reference density and temperature
-
811  init_uniform(lev);
-
812  initHSE(lev);
-
813  } else {
-
814  // No background flow initialization specified, initialize the
-
815  // background field to be equal to the base state, calculated from the
-
816  // problem-specific erf_init_dens_hse
-
817  initHSE(lev); // need to call this first
-
818  init_from_hse(lev);
-
819  }
+
793 {
+
794  t_new[lev] = time;
+
795  t_old[lev] = time - 1.e200;
+
796 
+
797  auto& lev_new = vars_new[lev];
+
798  auto& lev_old = vars_old[lev];
+
799 
+
800  // Loop over grids at this level to initialize our grid data
+
801  lev_new[Vars::cons].setVal(0.0); lev_old[Vars::cons].setVal(0.0);
+
802  lev_new[Vars::xvel].setVal(0.0); lev_old[Vars::xvel].setVal(0.0);
+
803  lev_new[Vars::yvel].setVal(0.0); lev_old[Vars::yvel].setVal(0.0);
+
804  lev_new[Vars::zvel].setVal(0.0); lev_old[Vars::zvel].setVal(0.0);
+
805 
+
806  // Initialize background flow (optional)
+
807  if (init_type == "input_sounding") {
+
808  // The base state is initialized by integrating vertically through the
+
809  // input sounding, if the init_sounding_ideal flag is set; otherwise
+
810  // it is set by initHSE()
+
811  init_from_input_sounding(lev);
+
812  if (!init_sounding_ideal) initHSE();
+
813 
+
814 #ifdef ERF_USE_NETCDF
+
815  } else if (init_type == "ideal" || init_type == "real") {
+
816  // The base state is initialized from WRF wrfinput data, output by
+
817  // ideal.exe or real.exe
+
818  init_from_wrfinput(lev);
+
819  if (init_type == "ideal") initHSE();
820 
-
821 #if defined(ERF_USE_MOISTURE)
-
822  qmoist[lev].setVal(0.);
-
823 #endif
-
824 
-
825  // Add problem-specific flow features
-
826  //
-
827  // Notes:
-
828  // - This calls init_custom_pert that is defined for each problem
-
829  // - This may modify the base state
-
830  // - The fields set by init_custom_pert are **perturbations** to the
-
831  // background flow set based on init_type
-
832  init_custom(lev);
-
833 
-
834  // Ensure that the face-based data are the same on both sides of a periodic domain.
-
835  // The data associated with the lower grid ID is considered the correct value.
-
836  lev_new[Vars::xvel].OverrideSync(geom[lev].periodicity());
-
837  lev_new[Vars::yvel].OverrideSync(geom[lev].periodicity());
-
838  lev_new[Vars::zvel].OverrideSync(geom[lev].periodicity());
-
839 }
+
821  } else if (init_type == "metgrid") {
+
822  // The base state is initialized from data output by WPS metgrid;
+
823  // we will rebalance after interpolation
+
824  init_from_metgrid(lev);
+
825 #endif
+
826  } else if (init_type == "uniform") {
+
827  // Initialize a uniform background field and base state based on the
+
828  // problem-specified reference density and temperature
+
829  init_uniform(lev);
+
830  initHSE(lev);
+
831  } else {
+
832  // No background flow initialization specified, initialize the
+
833  // background field to be equal to the base state, calculated from the
+
834  // problem-specific erf_init_dens_hse
+
835  initHSE(lev); // need to call this first
+
836  init_from_hse(lev);
+
837  }
+
838 
+
839 #if defined(ERF_USE_MOISTURE)
+
840  qmoist[lev].setVal(0.);
+
841 #endif
+
842 
+
843  // Add problem-specific flow features
+
844  //
+
845  // Notes:
+
846  // - This calls init_custom_pert that is defined for each problem
+
847  // - This may modify the base state
+
848  // - The fields set by init_custom_pert are **perturbations** to the
+
849  // background flow set based on init_type
+
850  init_custom(lev);
+
851 
+
852  // Ensure that the face-based data are the same on both sides of a periodic domain.
+
853  // The data associated with the lower grid ID is considered the correct value.
+
854  lev_new[Vars::xvel].OverrideSync(geom[lev].periodicity());
+
855  lev_new[Vars::yvel].OverrideSync(geom[lev].periodicity());
+
856  lev_new[Vars::zvel].OverrideSync(geom[lev].periodicity());
+
857 }
ERF::init_from_input_sounding
void init_from_input_sounding(int lev)
Definition: ERF_init_from_input_sounding.cpp:43
ERF::init_custom
void init_custom(int lev)
Definition: ERF_init_custom.cpp:25
ERF::init_from_hse
void init_from_hse(int lev)
Definition: ERF_init_from_hse.cpp:34
@@ -5188,310 +5188,328 @@

467  } // lev

468  }
469 
-
470  if (coupling_type == "TwoWay") {
-
471  AverageDown();
-
472  }
-
473 
-
474 #ifdef ERF_USE_PARTICLES
-
475  // Initialize tracer particles if required
-
476  if (use_tracer_particles) {
-
477  tracer_particles = std::make_unique<TerrainFittedPC>(Geom(0), dmap[0], grids[0]);
-
478 
-
479  tracer_particles->InitParticles(*z_phys_nd[0]);
-
480 
-
481  Print() << "Initialized " << tracer_particles->TotalNumberOfParticles() << " tracer particles." << std::endl;
-
482  }
-
483 #endif
-
484 
-
485  } else { // Restart from a checkpoint
+
470  Real QKE_0;
+
471  if (pp.query("QKE_0", QKE_0)) {
+
472  for (int lev = 0; lev <= finest_level; lev++) {
+
473  auto& lev_new = vars_new[lev];
+
474  for (MFIter mfi(lev_new[Vars::cons], TilingIfNotGPU()); mfi.isValid(); ++mfi) {
+
475  const Box &bx = mfi.tilebox();
+
476  const auto &cons_arr = lev_new[Vars::cons].array(mfi);
+
477  // We want to set the lateral BC values, too
+
478  Box gbx = bx; // Copy constructor
+
479  gbx.grow(0,1); gbx.grow(1,1); // Grow by one in the lateral directions
+
480  amrex::ParallelFor(gbx, [=] AMREX_GPU_DEVICE (int i, int j, int k) noexcept {
+
481  cons_arr(i,j,k,RhoQKE_comp) = cons_arr(i,j,k,Rho_comp) * QKE_0;
+
482  });
+
483  } // mfi
+
484  }
+
485  }
486 
-
487  restart();
-
488 
-
489 #ifdef ERF_USE_MOISTURE
-
490  // Need to fill ghost cells here since we will use this qmoist in advance
-
491  for (int lev = 0; lev <= finest_level; lev++) {
-
492  FillPatchMoistVars(lev, qmoist[lev]);
-
493  }
-
494 #endif
-
495  }
+
487 
+
488  if (coupling_type == "TwoWay") {
+
489  AverageDown();
+
490  }
+
491 
+
492 #ifdef ERF_USE_PARTICLES
+
493  // Initialize tracer particles if required
+
494  if (use_tracer_particles) {
+
495  tracer_particles = std::make_unique<TerrainFittedPC>(Geom(0), dmap[0], grids[0]);
496 
-
497  if (input_bndry_planes) {
-
498  // Create the ReadBndryPlanes object so we can handle reading of boundary plane data
-
499  amrex::Print() << "Defining r2d for the first time " << std::endl;
-
500  m_r2d = std::make_unique< ReadBndryPlanes>(geom[0], solverChoice.rdOcp);
-
501 
-
502  // Read the "time.dat" file to know what data is available
-
503  m_r2d->read_time_file();
+
497  tracer_particles->InitParticles(*z_phys_nd[0]);
+
498 
+
499  Print() << "Initialized " << tracer_particles->TotalNumberOfParticles() << " tracer particles." << std::endl;
+
500  }
+
501 #endif
+
502 
+
503  } else { // Restart from a checkpoint
504 
-
505  amrex::Real dt_dummy = 1.e200;
-
506  m_r2d->read_input_files(t_new[0],dt_dummy,m_bc_extdir_vals);
-
507  }
-
508 
-
509  // Initialize flux registers (whether we start from scratch or restart)
-
510  if (coupling_type == "TwoWay") {
-
511  flux_registers[0] = 0;
-
512  for (int lev = 1; lev <= finest_level; lev++)
-
513  {
-
514  flux_registers[lev] = new FluxRegister(grids[lev], dmap[lev], ref_ratio[lev-1], lev, NVAR);
-
515  }
-
516  }
-
517 
-
518 #ifdef ERF_USE_MOISTURE
-
519  // Initialize microphysics here
-
520  micro.define(solverChoice);
-
521 
-
522  // Call Init which will call Diagnose to fill qmoist
-
523  for (int lev = 0; lev <= finest_level; ++lev)
-
524  {
-
525  // If not restarting we need to fill qmoist given qt and qp.
-
526  if (restart_chkfile.empty()) {
-
527  micro.Init(vars_new[lev][Vars::cons], qmoist[lev],
-
528  grids[lev], Geom(lev), 0.0); // dummy value, not needed just to diagnose
-
529  micro.Update(vars_new[lev][Vars::cons], qmoist[lev]);
-
530  }
-
531  }
-
532 #endif
-
533 
-
534  // Configure ABLMost params if used MostWall boundary condition
-
535  // NOTE: we must set up the MOST routine before calling WritePlotFile because
-
536  // WritePlotFile calls FillPatch in order to compute gradients
-
537  if (phys_bc_type[Orientation(Direction::z,Orientation::low)] == ERF_BC::MOST)
-
538  {
-
539  int ng_for_most = ComputeGhostCells(solverChoice.advChoice,solverChoice.use_NumDiff)+1;
-
540  m_most = std::make_unique<ABLMost>(geom,vars_old,Theta_prim,z_phys_nd,ng_for_most);
-
541 
-
542  // We now configure ABLMost params here so that we can print the averages at t=0
-
543  // Note we don't fill ghost cells here because this is just for diagnostics
-
544  for (int lev = 0; lev <= finest_level; ++lev)
-
545  {
-
546  amrex::IntVect ng = IntVect(0,0,0);
-
547  MultiFab S(vars_new[lev][Vars::cons],make_alias,0,2);
-
548  MultiFab::Copy( *Theta_prim[lev], S, Cons::RhoTheta, 0, 1, ng);
-
549  MultiFab::Divide(*Theta_prim[lev], S, Cons::Rho , 0, 1, ng);
-
550  m_most->update_mac_ptrs(lev, vars_new, Theta_prim);
-
551  m_most->update_fluxes(lev);
-
552  }
-
553  }
-
554 
-
555  if (solverChoice.use_rayleigh_damping)
+
505  restart();
+
506 
+
507 #ifdef ERF_USE_MOISTURE
+
508  // Need to fill ghost cells here since we will use this qmoist in advance
+
509  for (int lev = 0; lev <= finest_level; lev++) {
+
510  FillPatchMoistVars(lev, qmoist[lev]);
+
511  }
+
512 #endif
+
513  }
+
514 
+
515  if (input_bndry_planes) {
+
516  // Create the ReadBndryPlanes object so we can handle reading of boundary plane data
+
517  amrex::Print() << "Defining r2d for the first time " << std::endl;
+
518  m_r2d = std::make_unique< ReadBndryPlanes>(geom[0], solverChoice.rdOcp);
+
519 
+
520  // Read the "time.dat" file to know what data is available
+
521  m_r2d->read_time_file();
+
522 
+
523  amrex::Real dt_dummy = 1.e200;
+
524  m_r2d->read_input_files(t_new[0],dt_dummy,m_bc_extdir_vals);
+
525  }
+
526 
+
527  // Initialize flux registers (whether we start from scratch or restart)
+
528  if (coupling_type == "TwoWay") {
+
529  flux_registers[0] = 0;
+
530  for (int lev = 1; lev <= finest_level; lev++)
+
531  {
+
532  flux_registers[lev] = new FluxRegister(grids[lev], dmap[lev], ref_ratio[lev-1], lev, NVAR);
+
533  }
+
534  }
+
535 
+
536 #ifdef ERF_USE_MOISTURE
+
537  // Initialize microphysics here
+
538  micro.define(solverChoice);
+
539 
+
540  // Call Init which will call Diagnose to fill qmoist
+
541  for (int lev = 0; lev <= finest_level; ++lev)
+
542  {
+
543  // If not restarting we need to fill qmoist given qt and qp.
+
544  if (restart_chkfile.empty()) {
+
545  micro.Init(vars_new[lev][Vars::cons], qmoist[lev],
+
546  grids[lev], Geom(lev), 0.0); // dummy value, not needed just to diagnose
+
547  micro.Update(vars_new[lev][Vars::cons], qmoist[lev]);
+
548  }
+
549  }
+
550 #endif
+
551 
+
552  // Configure ABLMost params if used MostWall boundary condition
+
553  // NOTE: we must set up the MOST routine before calling WritePlotFile because
+
554  // WritePlotFile calls FillPatch in order to compute gradients
+
555  if (phys_bc_type[Orientation(Direction::z,Orientation::low)] == ERF_BC::MOST)
556  {
-
557  initRayleigh();
-
558  if (init_type == "input_sounding")
-
559  {
-
560  // overwrite Ubar, Tbar, and thetabar with input profiles
-
561  bool restarting = (!restart_chkfile.empty());
-
562  setRayleighRefFromSounding(restarting);
-
563  }
-
564 
-
565  }
-
566 
-
567  if (is_it_time_for_action(istep[0], t_new[0], dt[0], sum_interval, sum_per)) {
-
568  sum_integrated_quantities(t_new[0]);
-
569  write_1D_profiles(t_new[0]);
-
570  }
-
571 
-
572  // We only write the file at level 0 for now
-
573  if (output_bndry_planes)
+
557  int ng_for_most = ComputeGhostCells(solverChoice.advChoice,solverChoice.use_NumDiff)+1;
+
558  m_most = std::make_unique<ABLMost>(geom,vars_old,Theta_prim,z_phys_nd,ng_for_most);
+
559 
+
560  // We now configure ABLMost params here so that we can print the averages at t=0
+
561  // Note we don't fill ghost cells here because this is just for diagnostics
+
562  for (int lev = 0; lev <= finest_level; ++lev)
+
563  {
+
564  amrex::IntVect ng = IntVect(0,0,0);
+
565  MultiFab S(vars_new[lev][Vars::cons],make_alias,0,2);
+
566  MultiFab::Copy( *Theta_prim[lev], S, Cons::RhoTheta, 0, 1, ng);
+
567  MultiFab::Divide(*Theta_prim[lev], S, Cons::Rho , 0, 1, ng);
+
568  m_most->update_mac_ptrs(lev, vars_new, Theta_prim);
+
569  m_most->update_fluxes(lev,t_new[lev]);
+
570  }
+
571  }
+
572 
+
573  if (solverChoice.use_rayleigh_damping)
574  {
-
575  // Create the WriteBndryPlanes object so we can handle writing of boundary plane data
-
576  m_w2d = std::make_unique<WriteBndryPlanes>(grids,geom);
-
577 
-
578  amrex::Real time = 0.;
-
579  if (time >= bndry_output_planes_start_time) {
-
580  m_w2d->write_planes(0, time, vars_new);
+
575  initRayleigh();
+
576  if (init_type == "input_sounding")
+
577  {
+
578  // overwrite Ubar, Tbar, and thetabar with input profiles
+
579  bool restarting = (!restart_chkfile.empty());
+
580  setRayleighRefFromSounding(restarting);
581  }
-
582  }
-
583 
-
584 #ifdef ERF_USE_POISSON_SOLVE
-
585  if (restart_chkfile == "")
-
586  {
-
587  // Note -- this projection is only defined for no terrain
-
588  if (solverChoice.project_initial_velocity) {
-
589  AMREX_ALWAYS_ASSERT(solverChoice.use_terrain == 0);
-
590  project_velocities(vars_new);
-
591  }
-
592  }
-
593 #endif
-
594  // Copy from new into old just in case
-
595  for (int lev = 0; lev <= finest_level; ++lev)
-
596  {
-
597  auto& lev_new = vars_new[lev];
-
598  auto& lev_old = vars_old[lev];
-
599 
-
600  MultiFab::Copy(lev_old[Vars::cons],lev_new[Vars::cons],0,0,NVAR,lev_new[Vars::cons].nGrowVect());
-
601  MultiFab::Copy(lev_old[Vars::xvel],lev_new[Vars::xvel],0,0, 1,lev_new[Vars::xvel].nGrowVect());
-
602  MultiFab::Copy(lev_old[Vars::yvel],lev_new[Vars::yvel],0,0, 1,lev_new[Vars::yvel].nGrowVect());
-
603  MultiFab::Copy(lev_old[Vars::zvel],lev_new[Vars::zvel],0,0, 1,lev_new[Vars::zvel].nGrowVect());
-
604  }
-
605 
-
606  // Compute the minimum dz in the domain (to be used for setting the timestep)
-
607  dz_min = geom[0].CellSize(2);
-
608  if ( solverChoice.use_terrain ) {
-
609  dz_min *= (*detJ_cc[0]).min(0);
+
582 
+
583  }
+
584 
+
585  if (is_it_time_for_action(istep[0], t_new[0], dt[0], sum_interval, sum_per)) {
+
586  sum_integrated_quantities(t_new[0]);
+
587  write_1D_profiles(t_new[0]);
+
588  }
+
589 
+
590  // We only write the file at level 0 for now
+
591  if (output_bndry_planes)
+
592  {
+
593  // Create the WriteBndryPlanes object so we can handle writing of boundary plane data
+
594  m_w2d = std::make_unique<WriteBndryPlanes>(grids,geom);
+
595 
+
596  amrex::Real time = 0.;
+
597  if (time >= bndry_output_planes_start_time) {
+
598  m_w2d->write_planes(0, time, vars_new);
+
599  }
+
600  }
+
601 
+
602 #ifdef ERF_USE_POISSON_SOLVE
+
603  if (restart_chkfile == "")
+
604  {
+
605  // Note -- this projection is only defined for no terrain
+
606  if (solverChoice.project_initial_velocity) {
+
607  AMREX_ALWAYS_ASSERT(solverChoice.use_terrain == 0);
+
608  project_velocities(vars_new);
+
609  }
610  }
-
611 
-
612  ComputeDt();
-
613 
-
614  // Fill ghost cells/faces
-
615  for (int lev = 0; lev <= finest_level; ++lev)
-
616  {
-
617  // NOTE: we must set up the FillPatcher object before calling
-
618  // FillPatch at a fine level
-
619  if (coupling_type=="OneWay" && cf_width>0 && lev>0) {
-
620  Construct_ERFFillPatchers(lev);
-
621  Register_ERFFillPatchers(lev);
-
622  }
+
611 #endif
+
612  // Copy from new into old just in case
+
613  for (int lev = 0; lev <= finest_level; ++lev)
+
614  {
+
615  auto& lev_new = vars_new[lev];
+
616  auto& lev_old = vars_old[lev];
+
617 
+
618  MultiFab::Copy(lev_old[Vars::cons],lev_new[Vars::cons],0,0,NVAR,lev_new[Vars::cons].nGrowVect());
+
619  MultiFab::Copy(lev_old[Vars::xvel],lev_new[Vars::xvel],0,0, 1,lev_new[Vars::xvel].nGrowVect());
+
620  MultiFab::Copy(lev_old[Vars::yvel],lev_new[Vars::yvel],0,0, 1,lev_new[Vars::yvel].nGrowVect());
+
621  MultiFab::Copy(lev_old[Vars::zvel],lev_new[Vars::zvel],0,0, 1,lev_new[Vars::zvel].nGrowVect());
+
622  }
623 
-
624  auto& lev_new = vars_new[lev];
-
625 
-
626  FillPatch(lev, t_new[lev],
-
627  {&lev_new[Vars::cons],&lev_new[Vars::xvel],&lev_new[Vars::yvel],&lev_new[Vars::zvel]});
-
628 
-
629  // We need to fill the ghost cell values of the base state in case it wasn't
-
630  // done in the initialization
-
631  base_state[lev].FillBoundary(geom[lev].periodicity());
-
632 
-
633  // For moving terrain only
-
634  if (solverChoice.terrain_type > 0) {
-
635  MultiFab::Copy(base_state_new[lev],base_state[lev],0,0,3,1);
-
636  base_state_new[lev].FillBoundary(geom[lev].periodicity());
-
637  }
-
638  }
-
639 
-
640  if (restart_chkfile.empty() && check_int > 0)
-
641  {
-
642 #ifdef ERF_USE_NETCDF
-
643  if (check_type == "netcdf") {
-
644  WriteNCCheckpointFile();
-
645  }
-
646 #endif
-
647  if (check_type == "native") {
-
648  WriteCheckpointFile();
-
649  }
-
650  last_check_file_step = 0;
-
651  }
-
652 
-
653  if ( (restart_chkfile.empty()) ||
-
654  (!restart_chkfile.empty() && plot_file_on_restart) )
-
655  {
-
656  if (plot_int_1 > 0)
-
657  {
-
658  WritePlotFile(1,plot_var_names_1);
-
659  last_plot_file_step_1 = istep[0];
-
660  }
-
661  if (plot_int_2 > 0)
-
662  {
-
663  WritePlotFile(2,plot_var_names_2);
-
664  last_plot_file_step_2 = istep[0];
-
665  }
-
666  }
-
667 
-
668  // Set these up here because we need to know which MPI rank "cell" is on...
-
669  ParmParse pp("erf");
-
670  if (pp.contains("data_log"))
-
671  {
-
672  int num_datalogs = pp.countval("data_log");
-
673  datalog.resize(num_datalogs);
-
674  datalogname.resize(num_datalogs);
-
675  pp.queryarr("data_log",datalogname,0,num_datalogs);
-
676  for (int i = 0; i < num_datalogs; i++)
-
677  setRecordDataInfo(i,datalogname[i]);
-
678  }
-
679 
-
680  if (pp.contains("sample_point_log") && pp.contains("sample_point"))
-
681  {
-
682  int lev = 0;
-
683 
-
684  int num_samplepts = pp.countval("sample_point") / AMREX_SPACEDIM;
-
685  if (num_samplepts > 0) {
-
686  Vector<int> index; index.resize(num_samplepts*AMREX_SPACEDIM);
-
687  samplepoint.resize(num_samplepts);
-
688 
-
689  pp.queryarr("sample_point",index,0,num_samplepts*AMREX_SPACEDIM);
-
690  for (int i = 0; i < num_samplepts; i++) {
-
691  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
-
692  samplepoint[i] = iv;
-
693  }
-
694  }
-
695 
-
696  int num_sampleptlogs = pp.countval("sample_point_log");
-
697  AMREX_ALWAYS_ASSERT(num_sampleptlogs == num_samplepts);
-
698  if (num_sampleptlogs > 0) {
-
699  sampleptlog.resize(num_sampleptlogs);
-
700  sampleptlogname.resize(num_sampleptlogs);
-
701  pp.queryarr("sample_point_log",sampleptlogname,0,num_sampleptlogs);
-
702 
-
703  for (int i = 0; i < num_sampleptlogs; i++) {
-
704  setRecordSamplePointInfo(i,lev,samplepoint[i],sampleptlogname[i]);
-
705  }
-
706  }
-
707 
-
708  }
-
709 
-
710  if (pp.contains("sample_line_log") && pp.contains("sample_line"))
-
711  {
-
712  int lev = 0;
+
624  // Compute the minimum dz in the domain (to be used for setting the timestep)
+
625  dz_min = geom[0].CellSize(2);
+
626  if ( solverChoice.use_terrain ) {
+
627  dz_min *= (*detJ_cc[0]).min(0);
+
628  }
+
629 
+
630  ComputeDt();
+
631 
+
632  // Fill ghost cells/faces
+
633  for (int lev = 0; lev <= finest_level; ++lev)
+
634  {
+
635  // NOTE: we must set up the FillPatcher object before calling
+
636  // FillPatch at a fine level
+
637  if (coupling_type=="OneWay" && cf_width>0 && lev>0) {
+
638  Construct_ERFFillPatchers(lev);
+
639  Register_ERFFillPatchers(lev);
+
640  }
+
641 
+
642  auto& lev_new = vars_new[lev];
+
643 
+
644  FillPatch(lev, t_new[lev],
+
645  {&lev_new[Vars::cons],&lev_new[Vars::xvel],&lev_new[Vars::yvel],&lev_new[Vars::zvel]});
+
646 
+
647  // We need to fill the ghost cell values of the base state in case it wasn't
+
648  // done in the initialization
+
649  base_state[lev].FillBoundary(geom[lev].periodicity());
+
650 
+
651  // For moving terrain only
+
652  if (solverChoice.terrain_type > 0) {
+
653  MultiFab::Copy(base_state_new[lev],base_state[lev],0,0,3,1);
+
654  base_state_new[lev].FillBoundary(geom[lev].periodicity());
+
655  }
+
656  }
+
657 
+
658  if (restart_chkfile.empty() && check_int > 0)
+
659  {
+
660 #ifdef ERF_USE_NETCDF
+
661  if (check_type == "netcdf") {
+
662  WriteNCCheckpointFile();
+
663  }
+
664 #endif
+
665  if (check_type == "native") {
+
666  WriteCheckpointFile();
+
667  }
+
668  last_check_file_step = 0;
+
669  }
+
670 
+
671  if ( (restart_chkfile.empty()) ||
+
672  (!restart_chkfile.empty() && plot_file_on_restart) )
+
673  {
+
674  if (plot_int_1 > 0)
+
675  {
+
676  WritePlotFile(1,plot_var_names_1);
+
677  last_plot_file_step_1 = istep[0];
+
678  }
+
679  if (plot_int_2 > 0)
+
680  {
+
681  WritePlotFile(2,plot_var_names_2);
+
682  last_plot_file_step_2 = istep[0];
+
683  }
+
684  }
+
685 
+
686  // Set these up here because we need to know which MPI rank "cell" is on...
+
687  ParmParse pp("erf");
+
688  if (pp.contains("data_log"))
+
689  {
+
690  int num_datalogs = pp.countval("data_log");
+
691  datalog.resize(num_datalogs);
+
692  datalogname.resize(num_datalogs);
+
693  pp.queryarr("data_log",datalogname,0,num_datalogs);
+
694  for (int i = 0; i < num_datalogs; i++)
+
695  setRecordDataInfo(i,datalogname[i]);
+
696  }
+
697 
+
698  if (pp.contains("sample_point_log") && pp.contains("sample_point"))
+
699  {
+
700  int lev = 0;
+
701 
+
702  int num_samplepts = pp.countval("sample_point") / AMREX_SPACEDIM;
+
703  if (num_samplepts > 0) {
+
704  Vector<int> index; index.resize(num_samplepts*AMREX_SPACEDIM);
+
705  samplepoint.resize(num_samplepts);
+
706 
+
707  pp.queryarr("sample_point",index,0,num_samplepts*AMREX_SPACEDIM);
+
708  for (int i = 0; i < num_samplepts; i++) {
+
709  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
+
710  samplepoint[i] = iv;
+
711  }
+
712  }
713 
-
714  int num_samplelines = pp.countval("sample_line") / AMREX_SPACEDIM;
-
715  if (num_samplelines > 0) {
-
716  Vector<int> index; index.resize(num_samplelines*AMREX_SPACEDIM);
-
717  sampleline.resize(num_samplelines);
-
718 
-
719  pp.queryarr("sample_line",index,0,num_samplelines*AMREX_SPACEDIM);
-
720  for (int i = 0; i < num_samplelines; i++) {
-
721  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
-
722  sampleline[i] = iv;
+
714  int num_sampleptlogs = pp.countval("sample_point_log");
+
715  AMREX_ALWAYS_ASSERT(num_sampleptlogs == num_samplepts);
+
716  if (num_sampleptlogs > 0) {
+
717  sampleptlog.resize(num_sampleptlogs);
+
718  sampleptlogname.resize(num_sampleptlogs);
+
719  pp.queryarr("sample_point_log",sampleptlogname,0,num_sampleptlogs);
+
720 
+
721  for (int i = 0; i < num_sampleptlogs; i++) {
+
722  setRecordSamplePointInfo(i,lev,samplepoint[i],sampleptlogname[i]);
723  }
724  }
725 
-
726  int num_samplelinelogs = pp.countval("sample_line_log");
-
727  AMREX_ALWAYS_ASSERT(num_samplelinelogs == num_samplelines);
-
728  if (num_samplelinelogs > 0) {
-
729  samplelinelog.resize(num_samplelinelogs);
-
730  samplelinelogname.resize(num_samplelinelogs);
-
731  pp.queryarr("sample_line_log",samplelinelogname,0,num_samplelinelogs);
-
732 
-
733  for (int i = 0; i < num_samplelinelogs; i++) {
-
734  setRecordSampleLineInfo(i,lev,sampleline[i],samplelinelogname[i]);
-
735  }
-
736  }
-
737 
-
738  }
-
739 
-
740  BL_PROFILE_VAR_STOP(InitData);
-
741 }
+
726  }
+
727 
+
728  if (pp.contains("sample_line_log") && pp.contains("sample_line"))
+
729  {
+
730  int lev = 0;
+
731 
+
732  int num_samplelines = pp.countval("sample_line") / AMREX_SPACEDIM;
+
733  if (num_samplelines > 0) {
+
734  Vector<int> index; index.resize(num_samplelines*AMREX_SPACEDIM);
+
735  sampleline.resize(num_samplelines);
+
736 
+
737  pp.queryarr("sample_line",index,0,num_samplelines*AMREX_SPACEDIM);
+
738  for (int i = 0; i < num_samplelines; i++) {
+
739  IntVect iv(index[AMREX_SPACEDIM*i+0],index[AMREX_SPACEDIM*i+1],index[AMREX_SPACEDIM*i+2]);
+
740  sampleline[i] = iv;
+
741  }
+
742  }
+
743 
+
744  int num_samplelinelogs = pp.countval("sample_line_log");
+
745  AMREX_ALWAYS_ASSERT(num_samplelinelogs == num_samplelines);
+
746  if (num_samplelinelogs > 0) {
+
747  samplelinelog.resize(num_samplelinelogs);
+
748  samplelinelogname.resize(num_samplelinelogs);
+
749  pp.queryarr("sample_line_log",samplelinelogname,0,num_samplelinelogs);
+
750 
+
751  for (int i = 0; i < num_samplelinelogs; i++) {
+
752  setRecordSampleLineInfo(i,lev,sampleline[i],samplelinelogname[i]);
+
753  }
+
754  }
+
755 
+
756  }
+
757 
+
758  BL_PROFILE_VAR_STOP(InitData);
+
759 }
ERF::initRayleigh
void initRayleigh()
Initialize Rayleigh damping profiles.
Definition: ERF_init1d.cpp:17
-
ERF::samplelinelogname
amrex::Vector< std::string > samplelinelogname
Definition: ERF.H:965
+
ERF::samplelinelogname
amrex::Vector< std::string > samplelinelogname
Definition: ERF.H:970
ERF::setRayleighRefFromSounding
void setRayleighRefFromSounding(bool restarting)
Set Rayleigh mean profiles from input sounding.
Definition: ERF_init1d.cpp:71
-
ERF::sampleline
amrex::Vector< amrex::IntVect > sampleline
Definition: ERF.H:966
-
ERF::Register_ERFFillPatchers
void Register_ERFFillPatchers(int lev)
Definition: ERF.cpp:1263
-
ERF::setRecordDataInfo
void setRecordDataInfo(int i, const std::string &filename)
Definition: ERF.H:910
-
ERF::samplelinelog
amrex::Vector< std::unique_ptr< std::fstream > > samplelinelog
Definition: ERF.H:964
-
ERF::sum_interval
static int sum_interval
Definition: ERF.H:682
-
ERF::restart
void restart()
Definition: ERF.cpp:744
+
ERF::sampleline
amrex::Vector< amrex::IntVect > sampleline
Definition: ERF.H:971
+
ERF::Register_ERFFillPatchers
void Register_ERFFillPatchers(int lev)
Definition: ERF.cpp:1281
+
ERF::setRecordDataInfo
void setRecordDataInfo(int i, const std::string &filename)
Definition: ERF.H:915
+
ERF::samplelinelog
amrex::Vector< std::unique_ptr< std::fstream > > samplelinelog
Definition: ERF.H:969
+
ERF::sum_interval
static int sum_interval
Definition: ERF.H:687
+
ERF::restart
void restart()
Definition: ERF.cpp:762
ERF::write_1D_profiles
void write_1D_profiles(amrex::Real time)
Definition: ERF_Write1DProfiles.cpp:15
ERF::pp_prefix
std::string pp_prefix
Definition: ERF.H:293
ERF::init_bcs
void init_bcs()
Definition: ERF_init_bcs.cpp:21
-
ERF::sum_per
static amrex::Real sum_per
Definition: ERF.H:683
-
ERF::output_bndry_planes
static int output_bndry_planes
Definition: ERF.H:715
-
ERF::AverageDown
void AverageDown()
Definition: ERF.cpp:1187
+
ERF::sum_per
static amrex::Real sum_per
Definition: ERF.H:688
+
ERF::output_bndry_planes
static int output_bndry_planes
Definition: ERF.H:720
+
ERF::AverageDown
void AverageDown()
Definition: ERF.cpp:1205
ERF::restart_chkfile
std::string restart_chkfile
Definition: ERF.H:612
-
ERF::sampleptlogname
amrex::Vector< std::string > sampleptlogname
Definition: ERF.H:961
+
ERF::sampleptlogname
amrex::Vector< std::string > sampleptlogname
Definition: ERF.H:966
ERF::sum_integrated_quantities
void sum_integrated_quantities(amrex::Real time)
Definition: ERF_WriteScalarProfiles.cpp:14
-
ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:960
+
ERF::sampleptlog
amrex::Vector< std::unique_ptr< std::fstream > > sampleptlog
Definition: ERF.H:965
ERF::start_time
amrex::Real start_time
Definition: ERF.H:608
-
ERF::m_w2d
std::unique_ptr< WriteBndryPlanes > m_w2d
Definition: ERF.H:755
-
ERF::bndry_output_planes_start_time
static amrex::Real bndry_output_planes_start_time
Definition: ERF.H:718
+
ERF::m_w2d
std::unique_ptr< WriteBndryPlanes > m_w2d
Definition: ERF.H:760
+
ERF::bndry_output_planes_start_time
static amrex::Real bndry_output_planes_start_time
Definition: ERF.H:723
ERF::is_it_time_for_action
static bool is_it_time_for_action(int nstep, amrex::Real time, amrex::Real dt, int action_interval, amrex::Real action_per)
Definition: ERF_WriteScalarProfiles.cpp:331
ERF::InitData
void InitData()
Definition: ERF.cpp:386
ERF::plot_file_on_restart
int plot_file_on_restart
Definition: ERF.H:601
-
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1213
-
ERF::setRecordSampleLineInfo
void setRecordSampleLineInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:940
-
ERF::ComputeGhostCells
static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &advChoice, bool use_num_diff)
Definition: ERF.H:774
-
ERF::samplepoint
amrex::Vector< amrex::IntVect > samplepoint
Definition: ERF.H:962
-
ERF::setRecordSamplePointInfo
void setRecordSamplePointInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:923
-
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:256
-
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:241
+
ERF::Construct_ERFFillPatchers
void Construct_ERFFillPatchers(int lev)
Definition: ERF.cpp:1231
+
ERF::setRecordSampleLineInfo
void setRecordSampleLineInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:945
+
ERF::ComputeGhostCells
static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &advChoice, bool use_num_diff)
Definition: ERF.H:779
+
ERF::samplepoint
amrex::Vector< amrex::IntVect > samplepoint
Definition: ERF.H:967
+
ERF::setRecordSamplePointInfo
void setRecordSamplePointInfo(int i, int lev, amrex::IntVect &cell, const std::string &filename)
Definition: ERF.H:928
+
SolverChoice::terrain_type
int terrain_type
Definition: DataStruct.H:262
+
SolverChoice::advChoice
AdvChoice advChoice
Definition: DataStruct.H:247

Referenced by MultiBlockContainer::InitializeBlocks(), and main().

@@ -5789,11 +5807,11 @@

59  d_rayleigh_thetabar[lev].begin());

60  }
61 }
-
ERF::h_rayleigh_wbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_wbar
Definition: ERF.H:730
-
ERF::h_rayleigh_thetabar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_thetabar
Definition: ERF.H:731
-
ERF::h_rayleigh_tau
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_tau
Definition: ERF.H:727
-
ERF::h_rayleigh_vbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_vbar
Definition: ERF.H:729
-
ERF::h_rayleigh_ubar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_ubar
Definition: ERF.H:728
+
ERF::h_rayleigh_wbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_wbar
Definition: ERF.H:735
+
ERF::h_rayleigh_thetabar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_thetabar
Definition: ERF.H:736
+
ERF::h_rayleigh_tau
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_tau
Definition: ERF.H:732
+
ERF::h_rayleigh_vbar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_vbar
Definition: ERF.H:734
+
ERF::h_rayleigh_ubar
amrex::Vector< amrex::Vector< amrex::Real > > h_rayleigh_ubar
Definition: ERF.H:733
@@ -5908,50 +5926,50 @@

-
1140 {
-
1141  // Get the number of cells in z at level 0
-
1142  int dir_z = AMREX_SPACEDIM-1;
-
1143  auto domain = geom[0].Domain();
-
1144  int size_z = domain.length(dir_z);
-
1145  int start_z = domain.smallEnd()[dir_z];
-
1146  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
-
1147 
-
1148  // resize the level 0 horizontal average vectors
-
1149  h_havg.resize(size_z, 0.0_rt);
-
1150 
-
1151  // Get the cell centered data and construct sums
-
1152 #ifdef _OPENMP
-
1153 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
-
1154 #endif
-
1155  for (MFIter mfi(S); mfi.isValid(); ++mfi) {
-
1156  const Box& box = mfi.validbox();
-
1157  const IntVect& se = box.smallEnd();
-
1158  const IntVect& be = box.bigEnd();
-
1159 
-
1160  auto fab_arr = S[mfi].array();
-
1161 
-
1162  FArrayBox fab_reduce(box, 1);
-
1163  Elixir elx_reduce = fab_reduce.elixir();
-
1164  auto arr_reduce = fab_reduce.array();
+
1158 {
+
1159  // Get the number of cells in z at level 0
+
1160  int dir_z = AMREX_SPACEDIM-1;
+
1161  auto domain = geom[0].Domain();
+
1162  int size_z = domain.length(dir_z);
+
1163  int start_z = domain.smallEnd()[dir_z];
+
1164  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
1165 
-
1166  ParallelFor(box, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
1167  arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);
-
1168  });
-
1169 
-
1170  for (int k=se[dir_z]; k <= be[dir_z]; ++k) {
-
1171  Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);
-
1172  h_havg[k-start_z] += fab_reduce.sum<RunOn::Device>(kbox,0);
-
1173  }
-
1174  }
-
1175 
-
1176  // combine sums from different MPI ranks
-
1177  ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());
-
1178 
-
1179  // divide by the total number of cells we are averaging over
-
1180  for (int k = 0; k < size_z; ++k) {
-
1181  h_havg[k] /= area_z;
-
1182  }
-
1183 }
+
1166  // resize the level 0 horizontal average vectors
+
1167  h_havg.resize(size_z, 0.0_rt);
+
1168 
+
1169  // Get the cell centered data and construct sums
+
1170 #ifdef _OPENMP
+
1171 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
+
1172 #endif
+
1173  for (MFIter mfi(S); mfi.isValid(); ++mfi) {
+
1174  const Box& box = mfi.validbox();
+
1175  const IntVect& se = box.smallEnd();
+
1176  const IntVect& be = box.bigEnd();
+
1177 
+
1178  auto fab_arr = S[mfi].array();
+
1179 
+
1180  FArrayBox fab_reduce(box, 1);
+
1181  Elixir elx_reduce = fab_reduce.elixir();
+
1182  auto arr_reduce = fab_reduce.array();
+
1183 
+
1184  ParallelFor(box, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
1185  arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);
+
1186  });
+
1187 
+
1188  for (int k=se[dir_z]; k <= be[dir_z]; ++k) {
+
1189  Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);
+
1190  h_havg[k-start_z] += fab_reduce.sum<RunOn::Device>(kbox,0);
+
1191  }
+
1192  }
+
1193 
+
1194  // combine sums from different MPI ranks
+
1195  ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());
+
1196 
+
1197  // divide by the total number of cells we are averaging over
+
1198  for (int k = 0; k < size_z; ++k) {
+
1199  h_havg[k] /= area_z;
+
1200  }
+
1201 }
@@ -5969,93 +5987,93 @@

-
1053 {
-
1054  int lev = 0;
-
1055 
-
1056  // First, average down all levels (if doing two-way coupling)
-
1057  if (coupling_type == "TwoWay") {
-
1058  AverageDown();
-
1059  }
-
1060 
-
1061  MultiFab mf(grids[lev], dmap[lev], 5, 0);
-
1062 
-
1063 #if defined(ERF_USE_MOISTURE)
-
1064  MultiFab qv(qmoist[lev], make_alias, 0, 1);
-
1065 #endif
-
1066 
-
1067  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
-
1068  const Box& bx = mfi.validbox();
-
1069  auto fab_arr = mf.array(mfi);
-
1070  auto cons_arr = vars_new[lev][Vars::cons].array(mfi);
-
1071 #if defined(ERF_USE_MOISTURE)
-
1072  auto qv_arr = qv.array(mfi);
-
1073 #endif
-
1074  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
1075  Real dens = cons_arr(i, j, k, Cons::Rho);
-
1076  fab_arr(i, j, k, 0) = dens;
-
1077  fab_arr(i, j, k, 1) = cons_arr(i, j, k, Cons::RhoTheta) / dens;
-
1078 #if defined(ERF_USE_MOISTURE)
-
1079  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, Cons::RhoTheta), qv_arr(i,j,k));
-
1080 #else
-
1081  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, Cons::RhoTheta));
-
1082 #endif
-
1083 #if defined(ERF_USE_MOISTURE)
-
1084  fab_arr(i, j, k, 3) = cons_arr(i, j, k, Cons::RhoQt) / dens;
-
1085  fab_arr(i, j, k, 4) = cons_arr(i, j, k, Cons::RhoQp) / dens;
-
1086 #endif
-
1087  });
-
1088  }
-
1089 
-
1090  int zdir = 2;
-
1091  auto domain = geom[0].Domain();
-
1092 
-
1093  // Sum in the horizontal plane
-
1094  Gpu::HostVector<Real> h_avg_density = sumToLine(mf,0,1,domain,zdir);
-
1095  Gpu::HostVector<Real> h_avg_temperature = sumToLine(mf,1,1,domain,zdir);
-
1096  Gpu::HostVector<Real> h_avg_pressure = sumToLine(mf,2,1,domain,zdir);
-
1097 #ifdef ERF_USE_MOISTURE
-
1098  Gpu::HostVector<Real> h_avg_qv = sumToLine(mf,3,1,domain,zdir);
-
1099  Gpu::HostVector<Real> h_avg_qc = sumToLine(mf,4,1,domain,zdir);
+
1071 {
+
1072  int lev = 0;
+
1073 
+
1074  // First, average down all levels (if doing two-way coupling)
+
1075  if (coupling_type == "TwoWay") {
+
1076  AverageDown();
+
1077  }
+
1078 
+
1079  MultiFab mf(grids[lev], dmap[lev], 5, 0);
+
1080 
+
1081 #if defined(ERF_USE_MOISTURE)
+
1082  MultiFab qv(qmoist[lev], make_alias, 0, 1);
+
1083 #endif
+
1084 
+
1085  for (MFIter mfi(mf); mfi.isValid(); ++mfi) {
+
1086  const Box& bx = mfi.validbox();
+
1087  auto fab_arr = mf.array(mfi);
+
1088  auto cons_arr = vars_new[lev][Vars::cons].array(mfi);
+
1089 #if defined(ERF_USE_MOISTURE)
+
1090  auto qv_arr = qv.array(mfi);
+
1091 #endif
+
1092  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
1093  Real dens = cons_arr(i, j, k, Cons::Rho);
+
1094  fab_arr(i, j, k, 0) = dens;
+
1095  fab_arr(i, j, k, 1) = cons_arr(i, j, k, Cons::RhoTheta) / dens;
+
1096 #if defined(ERF_USE_MOISTURE)
+
1097  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, Cons::RhoTheta), qv_arr(i,j,k));
+
1098 #else
+
1099  fab_arr(i, j, k, 2) = getPgivenRTh(cons_arr(i, j, k, Cons::RhoTheta));
1100 #endif
-
1101 
-
1102  // Divide by the total number of cells we are averaging over
-
1103  int size_z = domain.length(zdir);
-
1104  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
-
1105  int klen = static_cast<int>(h_avg_density.size());
-
1106  for (int k = 0; k < klen; ++k) {
-
1107  h_havg_density[k] /= area_z;
-
1108  h_havg_temperature[k] /= area_z;
-
1109  h_havg_pressure[k] /= area_z;
-
1110 #if defined(ERF_USE_MOISTURE)
-
1111  h_havg_qc[k] /= area_z;
-
1112  h_havg_qv[k] /= area_z;
-
1113 #endif
-
1114  }
-
1115 
-
1116  // resize device vectors
-
1117  d_havg_density.resize(size_z, 0.0_rt);
-
1118  d_havg_temperature.resize(size_z, 0.0_rt);
-
1119  d_havg_pressure.resize(size_z, 0.0_rt);
-
1120 #if defined(ERF_USE_MOISTURE)
-
1121  d_havg_qv.resize(size_z, 0.0_rt);
-
1122  d_havg_qc.resize(size_z, 0.0_rt);
-
1123 #endif
-
1124 
-
1125  // copy host vectors to device vectors
-
1126  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_density.begin(), h_havg_density.end(), d_havg_density.begin());
-
1127  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_temperature.begin(), h_havg_temperature.end(), d_havg_temperature.begin());
-
1128  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_pressure.begin(), h_havg_pressure.end(), d_havg_pressure.begin());
-
1129 #if defined(ERF_USE_MOISTURE)
-
1130  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_qv.begin(), h_havg_qv.end(), d_havg_qv.begin());
-
1131  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_qc.begin(), h_havg_qc.end(), d_havg_qc.begin());
-
1132 #endif
-
1133 }
-
ERF::d_havg_temperature
amrex::Gpu::DeviceVector< amrex::Real > d_havg_temperature
Definition: ERF.H:746
-
ERF::h_havg_pressure
amrex::Vector< amrex::Real > h_havg_pressure
Definition: ERF.H:740
-
ERF::h_havg_density
amrex::Vector< amrex::Real > h_havg_density
Definition: ERF.H:738
-
ERF::d_havg_density
amrex::Gpu::DeviceVector< amrex::Real > d_havg_density
Definition: ERF.H:745
-
ERF::h_havg_temperature
amrex::Vector< amrex::Real > h_havg_temperature
Definition: ERF.H:739
-
ERF::d_havg_pressure
amrex::Gpu::DeviceVector< amrex::Real > d_havg_pressure
Definition: ERF.H:747
+
1101 #if defined(ERF_USE_MOISTURE)
+
1102  fab_arr(i, j, k, 3) = cons_arr(i, j, k, Cons::RhoQt) / dens;
+
1103  fab_arr(i, j, k, 4) = cons_arr(i, j, k, Cons::RhoQp) / dens;
+
1104 #endif
+
1105  });
+
1106  }
+
1107 
+
1108  int zdir = 2;
+
1109  auto domain = geom[0].Domain();
+
1110 
+
1111  // Sum in the horizontal plane
+
1112  Gpu::HostVector<Real> h_avg_density = sumToLine(mf,0,1,domain,zdir);
+
1113  Gpu::HostVector<Real> h_avg_temperature = sumToLine(mf,1,1,domain,zdir);
+
1114  Gpu::HostVector<Real> h_avg_pressure = sumToLine(mf,2,1,domain,zdir);
+
1115 #ifdef ERF_USE_MOISTURE
+
1116  Gpu::HostVector<Real> h_avg_qv = sumToLine(mf,3,1,domain,zdir);
+
1117  Gpu::HostVector<Real> h_avg_qc = sumToLine(mf,4,1,domain,zdir);
+
1118 #endif
+
1119 
+
1120  // Divide by the total number of cells we are averaging over
+
1121  int size_z = domain.length(zdir);
+
1122  Real area_z = static_cast<Real>(domain.length(0)*domain.length(1));
+
1123  int klen = static_cast<int>(h_avg_density.size());
+
1124  for (int k = 0; k < klen; ++k) {
+
1125  h_havg_density[k] /= area_z;
+
1126  h_havg_temperature[k] /= area_z;
+
1127  h_havg_pressure[k] /= area_z;
+
1128 #if defined(ERF_USE_MOISTURE)
+
1129  h_havg_qc[k] /= area_z;
+
1130  h_havg_qv[k] /= area_z;
+
1131 #endif
+
1132  }
+
1133 
+
1134  // resize device vectors
+
1135  d_havg_density.resize(size_z, 0.0_rt);
+
1136  d_havg_temperature.resize(size_z, 0.0_rt);
+
1137  d_havg_pressure.resize(size_z, 0.0_rt);
+
1138 #if defined(ERF_USE_MOISTURE)
+
1139  d_havg_qv.resize(size_z, 0.0_rt);
+
1140  d_havg_qc.resize(size_z, 0.0_rt);
+
1141 #endif
+
1142 
+
1143  // copy host vectors to device vectors
+
1144  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_density.begin(), h_havg_density.end(), d_havg_density.begin());
+
1145  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_temperature.begin(), h_havg_temperature.end(), d_havg_temperature.begin());
+
1146  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_pressure.begin(), h_havg_pressure.end(), d_havg_pressure.begin());
+
1147 #if defined(ERF_USE_MOISTURE)
+
1148  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_qv.begin(), h_havg_qv.end(), d_havg_qv.begin());
+
1149  amrex::Gpu::copy(amrex::Gpu::hostToDevice, h_havg_qc.begin(), h_havg_qc.end(), d_havg_qc.begin());
+
1150 #endif
+
1151 }
+
ERF::d_havg_temperature
amrex::Gpu::DeviceVector< amrex::Real > d_havg_temperature
Definition: ERF.H:751
+
ERF::h_havg_pressure
amrex::Vector< amrex::Real > h_havg_pressure
Definition: ERF.H:745
+
ERF::h_havg_density
amrex::Vector< amrex::Real > h_havg_density
Definition: ERF.H:743
+
ERF::d_havg_density
amrex::Gpu::DeviceVector< amrex::Real > d_havg_density
Definition: ERF.H:750
+
ERF::h_havg_temperature
amrex::Vector< amrex::Real > h_havg_temperature
Definition: ERF.H:744
+
ERF::d_havg_pressure
amrex::Gpu::DeviceVector< amrex::Real > d_havg_pressure
Definition: ERF.H:752
Here is the call graph for this function:
@@ -6367,8 +6385,8 @@

186  }

187  }
188 }
-
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:774
-
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: DataStruct.H:253
+
ERF::init_only
void init_only(int lev, amrex::Real time)
Definition: ERF.cpp:792
+
SolverChoice::test_mapfactor
bool test_mapfactor
Definition: DataStruct.H:259
@@ -6394,9 +6412,9 @@

-
834  {
-
835  return datalog.size();
-
836  }
+
839  {
+
840  return datalog.size();
+
841  }
@@ -6422,9 +6440,9 @@

-
862  {
-
863  return samplelinelog.size();
-
864  }
+
867  {
+
868  return samplelinelog.size();
+
869  }
@@ -6450,9 +6468,9 @@

-
888  {
-
889  return sampleline.size();
-
890  }
+
893  {
+
894  return sampleline.size();
+
895  }
@@ -6478,9 +6496,9 @@

-
848  {
-
849  return sampleptlog.size();
-
850  }
+
853  {
+
854  return sampleptlog.size();
+
855  }
@@ -6506,9 +6524,9 @@

-
875  {
-
876  return samplepoint.size();
-
877  }
+
880  {
+
881  return samplepoint.size();
+
882  }
@@ -6724,16 +6742,16 @@

381  }
382 } // post_timestep
make_zcc
void make_zcc(const amrex::Geometry &geom, amrex::MultiFab &z_phys_nd, amrex::MultiFab &z_phys_cc)
Definition: TerrainMetrics.cpp:464
-
ERF::column_loc_y
static amrex::Real column_loc_y
Definition: ERF.H:711
-
ERF::bndry_output_planes_per
static amrex::Real bndry_output_planes_per
Definition: ERF.H:717
-
ERF::column_file_name
static std::string column_file_name
Definition: ERF.H:712
+
ERF::column_loc_y
static amrex::Real column_loc_y
Definition: ERF.H:716
+
ERF::bndry_output_planes_per
static amrex::Real bndry_output_planes_per
Definition: ERF.H:722
+
ERF::column_file_name
static std::string column_file_name
Definition: ERF.H:717
ERF::profile_int
int profile_int
Definition: ERF.H:635
-
ERF::column_per
static amrex::Real column_per
Definition: ERF.H:709
-
ERF::bndry_output_planes_interval
static int bndry_output_planes_interval
Definition: ERF.H:716
-
ERF::column_loc_x
static amrex::Real column_loc_x
Definition: ERF.H:710
-
ERF::output_1d_column
static int output_1d_column
Definition: ERF.H:707
-
ERF::column_interval
static int column_interval
Definition: ERF.H:708
-
ERF::get_flux_reg
AMREX_FORCE_INLINE amrex::FluxRegister & get_flux_reg(int lev)
Definition: ERF.H:819
+
ERF::column_per
static amrex::Real column_per
Definition: ERF.H:714
+
ERF::bndry_output_planes_interval
static int bndry_output_planes_interval
Definition: ERF.H:721
+
ERF::column_loc_x
static amrex::Real column_loc_x
Definition: ERF.H:715
+
ERF::output_1d_column
static int output_1d_column
Definition: ERF.H:712
+
ERF::column_interval
static int column_interval
Definition: ERF.H:713
+
ERF::get_flux_reg
AMREX_FORCE_INLINE amrex::FluxRegister & get_flux_reg(int lev)
Definition: ERF.H:824
Here is the call graph for this function:
@@ -7074,7 +7092,7 @@

484 }

ERF::GotoNextLine
static void GotoNextLine(std::istream &is)
Definition: Checkpoint.cpp:13
ERF::MakeNewLevelFromScratch
void MakeNewLevelFromScratch(int lev, amrex::Real time, const amrex::BoxArray &ba, const amrex::DistributionMapping &dm) override
Definition: ERF_make_new_level.cpp:30
-
ERF::wrfbdy_width
int wrfbdy_width
Definition: ERF.H:696
+
ERF::wrfbdy_width
int wrfbdy_width
Definition: ERF.H:701
@@ -7100,226 +7118,226 @@

-
844 {
-
845  {
-
846  ParmParse pp; // Traditionally, max_step and stop_time do not have prefix.
-
847  pp.query("max_step", max_step);
-
848  pp.query("stop_time", stop_time);
-
849 
-
850  pp.query("start_time", start_time); // This is optional, it defaults to 0
-
851  }
-
852 
-
853  ParmParse pp(pp_prefix);
-
854  ParmParse pp_amr("amr");
-
855  {
-
856  // The type of the file we restart from
-
857  pp.query("restart_type", restart_type);
-
858 
-
859  pp.query("regrid_int", regrid_int);
-
860  pp.query("check_file", check_file);
-
861  pp.query("check_type", check_type);
-
862 
-
863  // The regression tests use "amr.restart" and "amr.check_int" so we allow
-
864  // for those or "erf.restart" / "erf.check_int" with the former taking
-
865  // precedenceif both are specified
-
866  pp.query("check_int", check_int);
-
867  pp_amr.query("check_int", check_int);
-
868 
-
869  pp.query("restart", restart_chkfile);
-
870  pp_amr.query("restart", restart_chkfile);
-
871 
-
872  // Verbosity
-
873  pp.query("v", verbose);
-
874 
-
875  // Frequency of diagnostic output
-
876  pp.query("sum_interval", sum_interval);
-
877  pp.query("sum_period" , sum_per);
-
878 
-
879  // Time step controls
-
880  pp.query("cfl", cfl);
-
881  pp.query("init_shrink", init_shrink);
-
882  pp.query("change_max", change_max);
-
883 
-
884  pp.query("fixed_dt", fixed_dt);
-
885  pp.query("fixed_fast_dt", fixed_fast_dt);
-
886  pp.query("fixed_mri_dt_ratio", fixed_mri_dt_ratio);
-
887 
-
888 #ifdef ERF_USE_PARTICLES
-
889  // Tracer particle toggle
-
890  pp.query("use_tracer_particles", use_tracer_particles);
-
891 #endif
+
862 {
+
863  {
+
864  ParmParse pp; // Traditionally, max_step and stop_time do not have prefix.
+
865  pp.query("max_step", max_step);
+
866  pp.query("stop_time", stop_time);
+
867 
+
868  pp.query("start_time", start_time); // This is optional, it defaults to 0
+
869  }
+
870 
+
871  ParmParse pp(pp_prefix);
+
872  ParmParse pp_amr("amr");
+
873  {
+
874  // The type of the file we restart from
+
875  pp.query("restart_type", restart_type);
+
876 
+
877  pp.query("regrid_int", regrid_int);
+
878  pp.query("check_file", check_file);
+
879  pp.query("check_type", check_type);
+
880 
+
881  // The regression tests use "amr.restart" and "amr.check_int" so we allow
+
882  // for those or "erf.restart" / "erf.check_int" with the former taking
+
883  // precedenceif both are specified
+
884  pp.query("check_int", check_int);
+
885  pp_amr.query("check_int", check_int);
+
886 
+
887  pp.query("restart", restart_chkfile);
+
888  pp_amr.query("restart", restart_chkfile);
+
889 
+
890  // Verbosity
+
891  pp.query("v", verbose);
892 
-
893  // If this is set, it must be even
-
894  if (fixed_mri_dt_ratio > 0 && (fixed_mri_dt_ratio%2 != 0) )
-
895  {
-
896  amrex::Abort("If you specify fixed_mri_dt_ratio, it must be even");
-
897  }
-
898 
-
899  // If both fixed_dt and fast_dt are specified, their ratio must be an even integer
-
900  if (fixed_dt > 0. && fixed_fast_dt > 0. && fixed_mri_dt_ratio <= 0)
-
901  {
-
902  Real eps = 1.e-12;
-
903  int ratio = static_cast<int>( ( (1.0+eps) * fixed_dt ) / fixed_fast_dt );
-
904  if (fixed_dt / fixed_fast_dt != ratio)
-
905  {
-
906  amrex::Abort("Ratio of fixed_dt to fixed_fast_dt must be an even integer");
-
907  }
-
908  }
-
909 
-
910  // If all three are specified, they must be consistent
-
911  if (fixed_dt > 0. && fixed_fast_dt > 0. && fixed_mri_dt_ratio > 0)
-
912  {
-
913  if (fixed_dt / fixed_fast_dt != fixed_mri_dt_ratio)
-
914  {
-
915  amrex::Abort("Dt is over-specfied");
-
916  }
-
917  }
-
918 
-
919  AMREX_ALWAYS_ASSERT(cfl > 0. || fixed_dt > 0.);
-
920 
-
921  // Mesh refinement
-
922  pp.query("coupling_type",coupling_type);
-
923  AMREX_ALWAYS_ASSERT( (coupling_type == "OneWay") || (coupling_type == "TwoWay") );
-
924 
-
925  // How to initialize
-
926  pp.query("init_type",init_type);
-
927  if (!init_type.empty() &&
-
928  init_type != "uniform" &&
-
929  init_type != "ideal" &&
-
930  init_type != "real" &&
-
931  init_type != "metgrid" &&
-
932  init_type != "input_sounding")
-
933  {
-
934  amrex::Error("if specified, init_type must be uniform, ideal, real, metgrid or input_sounding");
+
893  // Frequency of diagnostic output
+
894  pp.query("sum_interval", sum_interval);
+
895  pp.query("sum_period" , sum_per);
+
896 
+
897  // Time step controls
+
898  pp.query("cfl", cfl);
+
899  pp.query("init_shrink", init_shrink);
+
900  pp.query("change_max", change_max);
+
901 
+
902  pp.query("fixed_dt", fixed_dt);
+
903  pp.query("fixed_fast_dt", fixed_fast_dt);
+
904  pp.query("fixed_mri_dt_ratio", fixed_mri_dt_ratio);
+
905 
+
906 #ifdef ERF_USE_PARTICLES
+
907  // Tracer particle toggle
+
908  pp.query("use_tracer_particles", use_tracer_particles);
+
909 #endif
+
910 
+
911  // If this is set, it must be even
+
912  if (fixed_mri_dt_ratio > 0 && (fixed_mri_dt_ratio%2 != 0) )
+
913  {
+
914  amrex::Abort("If you specify fixed_mri_dt_ratio, it must be even");
+
915  }
+
916 
+
917  // If both fixed_dt and fast_dt are specified, their ratio must be an even integer
+
918  if (fixed_dt > 0. && fixed_fast_dt > 0. && fixed_mri_dt_ratio <= 0)
+
919  {
+
920  Real eps = 1.e-12;
+
921  int ratio = static_cast<int>( ( (1.0+eps) * fixed_dt ) / fixed_fast_dt );
+
922  if (fixed_dt / fixed_fast_dt != ratio)
+
923  {
+
924  amrex::Abort("Ratio of fixed_dt to fixed_fast_dt must be an even integer");
+
925  }
+
926  }
+
927 
+
928  // If all three are specified, they must be consistent
+
929  if (fixed_dt > 0. && fixed_fast_dt > 0. && fixed_mri_dt_ratio > 0)
+
930  {
+
931  if (fixed_dt / fixed_fast_dt != fixed_mri_dt_ratio)
+
932  {
+
933  amrex::Abort("Dt is over-specfied");
+
934  }
935  }
936 
-
937  // No moving terrain with init real
-
938  if (init_type == "real") {
-
939  int terr_type(0);
-
940  pp.query("terrain_type",terr_type);
-
941  if (terr_type) {
-
942  amrex::Abort("Moving terrain is not supported with init real");
-
943  }
-
944  }
-
945 
-
946  // We use this to keep track of how many boxes we read in from WRF initialization
-
947  num_files_at_level.resize(max_level+1,0);
-
948 
-
949  // We use this to keep track of how many boxes are specified thru the refinement indicators
-
950  num_boxes_at_level.resize(max_level+1,0);
-
951  boxes_at_level.resize(max_level+1);
-
952 
-
953  // We always have exactly one file at level 0
-
954  num_boxes_at_level[0] = 1;
-
955  boxes_at_level[0].resize(1);
-
956  boxes_at_level[0][0] = geom[0].Domain();
-
957 
-
958 #ifdef ERF_USE_NETCDF
-
959  nc_init_file.resize(max_level+1);
-
960 
-
961  // NetCDF wrfinput initialization files -- possibly multiple files at each of multiple levels
-
962  // but we always have exactly one file at level 0
-
963  for (int lev = 0; lev <= max_level; lev++)
-
964  {
-
965  const std::string nc_file_names = amrex::Concatenate("nc_init_file_",lev,1);
-
966  if (pp.contains(nc_file_names.c_str()))
-
967  {
-
968  int num_files = pp.countval(nc_file_names.c_str());
-
969  num_files_at_level[lev] = num_files;
-
970  nc_init_file[lev].resize(num_files);
-
971  pp.queryarr(nc_file_names.c_str(), nc_init_file[lev],0,num_files);
-
972  for (int j = 0; j < num_files; j++)
-
973  amrex::Print() << "Reading NC init file names at level " << lev << " and index " << j << " : " << nc_init_file[lev][j] << std::endl;
-
974  }
-
975  }
-
976 
-
977  // NetCDF wrfbdy lateral boundary file
-
978  pp.query("nc_bdy_file", nc_bdy_file);
-
979 #endif
-
980 
-
981  // Text input_sounding file
-
982  pp.query("input_sounding_file", input_sounding_file);
-
983 
-
984  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
-
985  pp.query("init_sounding_ideal", init_sounding_ideal);
-
986 
-
987  // Output format
-
988  pp.query("plotfile_type", plotfile_type);
-
989  if (plotfile_type != "amrex" &&
-
990  plotfile_type != "netcdf" && plotfile_type != "NetCDF" &&
-
991  plotfile_type != "hdf5" && plotfile_type != "HDF5" )
-
992  {
-
993  amrex::Print() << "User selected plotfile_type = " << plotfile_type << std::endl;
-
994  amrex::Abort("Dont know this plotfile_type");
-
995  }
-
996  pp.query("plot_file_1", plot_file_1);
-
997  pp.query("plot_file_2", plot_file_2);
-
998  pp.query("plot_int_1", plot_int_1);
-
999  pp.query("plot_int_2", plot_int_2);
-
1000 
-
1001  pp.query("profile_int", profile_int);
-
1002 
-
1003  pp.query("output_1d_column", output_1d_column);
-
1004  pp.query("column_per", column_per);
-
1005  pp.query("column_interval", column_interval);
-
1006  pp.query("column_loc_x", column_loc_x);
-
1007  pp.query("column_loc_y", column_loc_y);
-
1008  pp.query("column_file_name", column_file_name);
-
1009 
-
1010  // Specify information about outputting planes of data
-
1011  pp.query("output_bndry_planes", output_bndry_planes);
-
1012  pp.query("bndry_output_planes_interval", bndry_output_planes_interval);
-
1013  pp.query("bndry_output_planes_per", bndry_output_planes_per);
-
1014  pp.query("bndry_output_start_time", bndry_output_planes_start_time);
-
1015 
-
1016  // Specify whether ingest boundary planes of data
-
1017  pp.query("input_bndry_planes", input_bndry_planes);
+
937  AMREX_ALWAYS_ASSERT(cfl > 0. || fixed_dt > 0.);
+
938 
+
939  // Mesh refinement
+
940  pp.query("coupling_type",coupling_type);
+
941  AMREX_ALWAYS_ASSERT( (coupling_type == "OneWay") || (coupling_type == "TwoWay") );
+
942 
+
943  // How to initialize
+
944  pp.query("init_type",init_type);
+
945  if (!init_type.empty() &&
+
946  init_type != "uniform" &&
+
947  init_type != "ideal" &&
+
948  init_type != "real" &&
+
949  init_type != "metgrid" &&
+
950  init_type != "input_sounding")
+
951  {
+
952  amrex::Error("if specified, init_type must be uniform, ideal, real, metgrid or input_sounding");
+
953  }
+
954 
+
955  // No moving terrain with init real
+
956  if (init_type == "real") {
+
957  int terr_type(0);
+
958  pp.query("terrain_type",terr_type);
+
959  if (terr_type) {
+
960  amrex::Abort("Moving terrain is not supported with init real");
+
961  }
+
962  }
+
963 
+
964  // We use this to keep track of how many boxes we read in from WRF initialization
+
965  num_files_at_level.resize(max_level+1,0);
+
966 
+
967  // We use this to keep track of how many boxes are specified thru the refinement indicators
+
968  num_boxes_at_level.resize(max_level+1,0);
+
969  boxes_at_level.resize(max_level+1);
+
970 
+
971  // We always have exactly one file at level 0
+
972  num_boxes_at_level[0] = 1;
+
973  boxes_at_level[0].resize(1);
+
974  boxes_at_level[0][0] = geom[0].Domain();
+
975 
+
976 #ifdef ERF_USE_NETCDF
+
977  nc_init_file.resize(max_level+1);
+
978 
+
979  // NetCDF wrfinput initialization files -- possibly multiple files at each of multiple levels
+
980  // but we always have exactly one file at level 0
+
981  for (int lev = 0; lev <= max_level; lev++)
+
982  {
+
983  const std::string nc_file_names = amrex::Concatenate("nc_init_file_",lev,1);
+
984  if (pp.contains(nc_file_names.c_str()))
+
985  {
+
986  int num_files = pp.countval(nc_file_names.c_str());
+
987  num_files_at_level[lev] = num_files;
+
988  nc_init_file[lev].resize(num_files);
+
989  pp.queryarr(nc_file_names.c_str(), nc_init_file[lev],0,num_files);
+
990  for (int j = 0; j < num_files; j++)
+
991  amrex::Print() << "Reading NC init file names at level " << lev << " and index " << j << " : " << nc_init_file[lev][j] << std::endl;
+
992  }
+
993  }
+
994 
+
995  // NetCDF wrfbdy lateral boundary file
+
996  pp.query("nc_bdy_file", nc_bdy_file);
+
997 #endif
+
998 
+
999  // Text input_sounding file
+
1000  pp.query("input_sounding_file", input_sounding_file);
+
1001 
+
1002  // Flag to trigger initialization from input_sounding like WRF's ideal.exe
+
1003  pp.query("init_sounding_ideal", init_sounding_ideal);
+
1004 
+
1005  // Output format
+
1006  pp.query("plotfile_type", plotfile_type);
+
1007  if (plotfile_type != "amrex" &&
+
1008  plotfile_type != "netcdf" && plotfile_type != "NetCDF" &&
+
1009  plotfile_type != "hdf5" && plotfile_type != "HDF5" )
+
1010  {
+
1011  amrex::Print() << "User selected plotfile_type = " << plotfile_type << std::endl;
+
1012  amrex::Abort("Dont know this plotfile_type");
+
1013  }
+
1014  pp.query("plot_file_1", plot_file_1);
+
1015  pp.query("plot_file_2", plot_file_2);
+
1016  pp.query("plot_int_1", plot_int_1);
+
1017  pp.query("plot_int_2", plot_int_2);
1018 
-
1019  // Query the set and total widths for wrfbdy interior ghost cells
-
1020  pp.query("wrfbdy_width", wrfbdy_width);
-
1021  pp.query("wrfbdy_set_width", wrfbdy_set_width);
-
1022  AMREX_ALWAYS_ASSERT(wrfbdy_width >= 0);
-
1023  AMREX_ALWAYS_ASSERT(wrfbdy_set_width >= 0);
-
1024  AMREX_ALWAYS_ASSERT(wrfbdy_width >= wrfbdy_set_width);
-
1025 
-
1026  // Query the set and total widths for crse-fine interior ghost cells
-
1027  pp.query("cf_width", cf_width);
-
1028  pp.query("cf_set_width", cf_set_width);
-
1029  AMREX_ALWAYS_ASSERT(cf_width >= 0);
-
1030  AMREX_ALWAYS_ASSERT(cf_set_width >= 0);
-
1031  AMREX_ALWAYS_ASSERT(cf_width >= cf_set_width);
-
1032 
-
1033  // AmrMesh iterate on grids?
-
1034  bool iterate(true);
-
1035  pp_amr.query("iterate_grids",iterate);
-
1036  if (!iterate) SetIterateToFalse();
-
1037  }
-
1038 
-
1039 #ifdef ERF_USE_MULTIBLOCK
-
1040  solverChoice.pp_prefix = pp_prefix;
-
1041 #endif
-
1042 
-
1043  solverChoice.init_params(max_level);
-
1044  if (verbose > 0) {
-
1045  solverChoice.display();
-
1046  }
-
1047 }
+
1019  pp.query("profile_int", profile_int);
+
1020 
+
1021  pp.query("output_1d_column", output_1d_column);
+
1022  pp.query("column_per", column_per);
+
1023  pp.query("column_interval", column_interval);
+
1024  pp.query("column_loc_x", column_loc_x);
+
1025  pp.query("column_loc_y", column_loc_y);
+
1026  pp.query("column_file_name", column_file_name);
+
1027 
+
1028  // Specify information about outputting planes of data
+
1029  pp.query("output_bndry_planes", output_bndry_planes);
+
1030  pp.query("bndry_output_planes_interval", bndry_output_planes_interval);
+
1031  pp.query("bndry_output_planes_per", bndry_output_planes_per);
+
1032  pp.query("bndry_output_start_time", bndry_output_planes_start_time);
+
1033 
+
1034  // Specify whether ingest boundary planes of data
+
1035  pp.query("input_bndry_planes", input_bndry_planes);
+
1036 
+
1037  // Query the set and total widths for wrfbdy interior ghost cells
+
1038  pp.query("wrfbdy_width", wrfbdy_width);
+
1039  pp.query("wrfbdy_set_width", wrfbdy_set_width);
+
1040  AMREX_ALWAYS_ASSERT(wrfbdy_width >= 0);
+
1041  AMREX_ALWAYS_ASSERT(wrfbdy_set_width >= 0);
+
1042  AMREX_ALWAYS_ASSERT(wrfbdy_width >= wrfbdy_set_width);
+
1043 
+
1044  // Query the set and total widths for crse-fine interior ghost cells
+
1045  pp.query("cf_width", cf_width);
+
1046  pp.query("cf_set_width", cf_set_width);
+
1047  AMREX_ALWAYS_ASSERT(cf_width >= 0);
+
1048  AMREX_ALWAYS_ASSERT(cf_set_width >= 0);
+
1049  AMREX_ALWAYS_ASSERT(cf_width >= cf_set_width);
+
1050 
+
1051  // AmrMesh iterate on grids?
+
1052  bool iterate(true);
+
1053  pp_amr.query("iterate_grids",iterate);
+
1054  if (!iterate) SetIterateToFalse();
+
1055  }
+
1056 
+
1057 #ifdef ERF_USE_MULTIBLOCK
+
1058  solverChoice.pp_prefix = pp_prefix;
+
1059 #endif
+
1060 
+
1061  solverChoice.init_params(max_level);
+
1062  if (verbose > 0) {
+
1063  solverChoice.display();
+
1064  }
+
1065 }
ERF::boxes_at_level
amrex::Vector< amrex::Vector< amrex::Box > > boxes_at_level
Definition: ERF.H:497
ERF::plot_file_2
std::string plot_file_2
Definition: ERF.H:630
ERF::restart_type
std::string restart_type
Definition: ERF.H:640
ERF::regrid_int
int regrid_int
Definition: ERF.H:626
ERF::num_files_at_level
amrex::Vector< int > num_files_at_level
Definition: ERF.H:496
-
ERF::nc_bdy_file
static std::string nc_bdy_file
Definition: ERF.H:695
-
ERF::wrfbdy_set_width
int wrfbdy_set_width
Definition: ERF.H:697
-
ERF::nc_init_file
static amrex::Vector< amrex::Vector< std::string > > nc_init_file
Definition: ERF.H:692
+
ERF::nc_bdy_file
static std::string nc_bdy_file
Definition: ERF.H:700
+
ERF::wrfbdy_set_width
int wrfbdy_set_width
Definition: ERF.H:702
+
ERF::nc_init_file
static amrex::Vector< amrex::Vector< std::string > > nc_init_file
Definition: ERF.H:697
ERF::init_shrink
static amrex::Real init_shrink
Definition: ERF.H:616
ERF::plot_file_1
std::string plot_file_1
Definition: ERF.H:629
ERF::num_boxes_at_level
amrex::Vector< int > num_boxes_at_level
Definition: ERF.H:495
ERF::check_file
std::string check_file
Definition: ERF.H:638
-
ERF::plotfile_type
static std::string plotfile_type
Definition: ERF.H:686
-
SolverChoice::pp_prefix
std::string pp_prefix
Definition: DataStruct.H:247
+
ERF::plotfile_type
static std::string plotfile_type
Definition: ERF.H:691
+
SolverChoice::pp_prefix
std::string pp_prefix
Definition: DataStruct.H:253
SolverChoice::init_params
void init_params(int max_level)
Definition: DataStruct.H:33
-
SolverChoice::display
void display()
Definition: DataStruct.H:170
+
SolverChoice::display
void display()
Definition: DataStruct.H:176
Here is the call graph for this function:
@@ -7489,14 +7507,14 @@

-
1264 {
-
1265  auto& lev_new = vars_new[lev-1];
-
1266  auto& lev_old = vars_old[lev-1];
-
1267  FPr_c[lev-1].RegisterCoarseData({&lev_old[Vars::cons], &lev_new[Vars::cons]}, {t_old[lev-1], t_new[lev-1]});
-
1268  FPr_u[lev-1].RegisterCoarseData({&lev_old[Vars::xvel], &lev_new[Vars::xvel]}, {t_old[lev-1], t_new[lev-1]});
-
1269  FPr_v[lev-1].RegisterCoarseData({&lev_old[Vars::yvel], &lev_new[Vars::yvel]}, {t_old[lev-1], t_new[lev-1]});
-
1270  FPr_w[lev-1].RegisterCoarseData({&lev_old[Vars::zvel], &lev_new[Vars::zvel]}, {t_old[lev-1], t_new[lev-1]});
-
1271 }
+
1282 {
+
1283  auto& lev_new = vars_new[lev-1];
+
1284  auto& lev_old = vars_old[lev-1];
+
1285  FPr_c[lev-1].RegisterCoarseData({&lev_old[Vars::cons], &lev_new[Vars::cons]}, {t_old[lev-1], t_new[lev-1]});
+
1286  FPr_u[lev-1].RegisterCoarseData({&lev_old[Vars::xvel], &lev_new[Vars::xvel]}, {t_old[lev-1], t_new[lev-1]});
+
1287  FPr_v[lev-1].RegisterCoarseData({&lev_old[Vars::yvel], &lev_new[Vars::yvel]}, {t_old[lev-1], t_new[lev-1]});
+
1288  FPr_w[lev-1].RegisterCoarseData({&lev_old[Vars::zvel], &lev_new[Vars::zvel]}, {t_old[lev-1], t_new[lev-1]});
+
1289 }

@@ -7656,29 +7674,29 @@

-
745 {
-
746  for (int lev = 0; lev <= finest_level; ++lev)
-
747  {
-
748  auto& lev_new = vars_new[lev];
-
749  auto& lev_old = vars_old[lev];
-
750  lev_new[Vars::cons].setVal(0.); lev_old[Vars::cons].setVal(0.);
-
751  lev_new[Vars::xvel].setVal(0.); lev_old[Vars::xvel].setVal(0.);
-
752  lev_new[Vars::yvel].setVal(0.); lev_old[Vars::yvel].setVal(0.);
-
753  lev_new[Vars::zvel].setVal(0.); lev_old[Vars::zvel].setVal(0.);
-
754  }
-
755 
-
756 #ifdef ERF_USE_NETCDF
-
757  if (restart_type == "netcdf") {
-
758  ReadNCCheckpointFile();
-
759  }
-
760 #endif
-
761  if (restart_type == "native") {
-
762  ReadCheckpointFile();
-
763  }
-
764 
-
765  // We set this here so that we don't over-write the checkpoint file we just started from
-
766  last_check_file_step = istep[0];
-
767 }
+
763 {
+
764  for (int lev = 0; lev <= finest_level; ++lev)
+
765  {
+
766  auto& lev_new = vars_new[lev];
+
767  auto& lev_old = vars_old[lev];
+
768  lev_new[Vars::cons].setVal(0.); lev_old[Vars::cons].setVal(0.);
+
769  lev_new[Vars::xvel].setVal(0.); lev_old[Vars::xvel].setVal(0.);
+
770  lev_new[Vars::yvel].setVal(0.); lev_old[Vars::yvel].setVal(0.);
+
771  lev_new[Vars::zvel].setVal(0.); lev_old[Vars::zvel].setVal(0.);
+
772  }
+
773 
+
774 #ifdef ERF_USE_NETCDF
+
775  if (restart_type == "netcdf") {
+
776  ReadNCCheckpointFile();
+
777  }
+
778 #endif
+
779  if (restart_type == "native") {
+
780  ReadCheckpointFile();
+
781  }
+
782 
+
783  // We set this here so that we don't over-write the checkpoint file we just started from
+
784  last_check_file_step = istep[0];
+
785 }
ERF::ReadCheckpointFile
void ReadCheckpointFile()
Definition: Checkpoint.cpp:223
@@ -7809,7 +7827,7 @@

244  } // if good

245  } // mfi
246 }
-
ERF::SampleLineLog
AMREX_FORCE_INLINE std::ostream & SampleLineLog(int i)
Definition: ERF.H:854
+
ERF::SampleLineLog
AMREX_FORCE_INLINE std::ostream & SampleLineLog(int i)
Definition: ERF.H:859
@@ -7886,7 +7904,7 @@

153  } // if good
154  } // only write from processor that holds the cell
155 }
-
ERF::SamplePointLog
AMREX_FORCE_INLINE std::ostream & SamplePointLog(int i)
Definition: ERF.H:840
+
ERF::SamplePointLog
AMREX_FORCE_INLINE std::ostream & SamplePointLog(int i)
Definition: ERF.H:845
@@ -7913,9 +7931,9 @@

-
881  {
-
882  return sampleline[i];
-
883  }
+
886  {
+
887  return sampleline[i];
+
888  }
@@ -7942,9 +7960,9 @@

-
855  {
-
856  return *samplelinelog[i];
-
857  }
+
860  {
+
861  return *samplelinelog[i];
+
862  }
@@ -7973,7 +7991,7 @@

The filename of the ith samplelinelog file.

-
975 { return samplelinelogname[i]; }
+
980 { return samplelinelogname[i]; }
@@ -8000,9 +8018,9 @@

-
868  {
-
869  return samplepoint[i];
-
870  }
+
873  {
+
874  return samplepoint[i];
+
875  }
@@ -8029,9 +8047,9 @@

-
841  {
-
842  return *sampleptlog[i];
-
843  }
+
846  {
+
847  return *sampleptlog[i];
+
848  }
@@ -8060,7 +8078,7 @@

The filename of the ith sampleptlog file.

-
972 { return sampleptlogname[i]; }
+
977 { return sampleptlogname[i]; }
@@ -8256,15 +8274,15 @@

119 }
interpolate_1d
AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real interpolate_1d(const amrex::Real *alpha, const amrex::Real *beta, const amrex::Real alpha_interp, const int alpha_size)
Definition: Interpolation_1D.H:12
-
InputSoundingData::z_inp_sound
amrex::Vector< amrex::Real > z_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::U_inp_sound
amrex::Vector< amrex::Real > U_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::V_inp_sound
amrex::Vector< amrex::Real > V_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::theta_inp_sound
amrex::Vector< amrex::Real > theta_inp_sound
Definition: InputSoundingData.H:266
-
InputSoundingData::size
int size() const
Definition: InputSoundingData.H:254
-
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:271
-
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:269
-
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:268
-
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:270
+
InputSoundingData::z_inp_sound
amrex::Vector< amrex::Real > z_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::U_inp_sound
amrex::Vector< amrex::Real > U_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::V_inp_sound
amrex::Vector< amrex::Real > V_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::theta_inp_sound
amrex::Vector< amrex::Real > theta_inp_sound
Definition: InputSoundingData.H:286
+
InputSoundingData::size
int size() const
Definition: InputSoundingData.H:274
+
SolverChoice::rayleigh_damp_T
bool rayleigh_damp_T
Definition: DataStruct.H:277
+
SolverChoice::rayleigh_damp_V
bool rayleigh_damp_V
Definition: DataStruct.H:275
+
SolverChoice::rayleigh_damp_U
bool rayleigh_damp_U
Definition: DataStruct.H:274
+
SolverChoice::rayleigh_damp_W
bool rayleigh_damp_W
Definition: DataStruct.H:276
Here is the call graph for this function:
@@ -8310,17 +8328,17 @@

-
911  {
-
912  if (amrex::ParallelDescriptor::IOProcessor())
-
913  {
-
914  datalog[i] = std::make_unique<std::fstream>();
-
915  datalog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
916  if (!datalog[i]->good()) {
-
917  amrex::FileOpenFailed(filename);
-
918  }
-
919  }
-
920  amrex::ParallelDescriptor::Barrier("ERF::setRecordDataInfo");
-
921  }
+
916  {
+
917  if (amrex::ParallelDescriptor::IOProcessor())
+
918  {
+
919  datalog[i] = std::make_unique<std::fstream>();
+
920  datalog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
921  if (!datalog[i]->good()) {
+
922  amrex::FileOpenFailed(filename);
+
923  }
+
924  }
+
925  amrex::ParallelDescriptor::Barrier("ERF::setRecordDataInfo");
+
926  }

@@ -8369,21 +8387,21 @@

-
941  {
-
942  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
-
943  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
-
944  {
-
945  const amrex::Box& bx = mfi.validbox();
-
946  if (bx.contains(cell)) {
-
947  samplelinelog[i] = std::make_unique<std::fstream>();
-
948  samplelinelog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
949  if (!samplelinelog[i]->good()) {
-
950  amrex::FileOpenFailed(filename);
-
951  }
-
952  }
-
953  }
-
954  amrex::ParallelDescriptor::Barrier("ERF::setRecordSampleLineInfo");
-
955  }
+
946  {
+
947  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
+
948  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
+
949  {
+
950  const amrex::Box& bx = mfi.validbox();
+
951  if (bx.contains(cell)) {
+
952  samplelinelog[i] = std::make_unique<std::fstream>();
+
953  samplelinelog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
954  if (!samplelinelog[i]->good()) {
+
955  amrex::FileOpenFailed(filename);
+
956  }
+
957  }
+
958  }
+
959  amrex::ParallelDescriptor::Barrier("ERF::setRecordSampleLineInfo");
+
960  }
@@ -8432,21 +8450,21 @@

-
924  {
-
925  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
-
926  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
-
927  {
-
928  const amrex::Box& bx = mfi.validbox();
-
929  if (bx.contains(cell)) {
-
930  sampleptlog[i] = std::make_unique<std::fstream>();
-
931  sampleptlog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
-
932  if (!sampleptlog[i]->good()) {
-
933  amrex::FileOpenFailed(filename);
-
934  }
-
935  }
-
936  }
-
937  amrex::ParallelDescriptor::Barrier("ERF::setRecordSamplePointInfo");
-
938  }
+
929  {
+
930  amrex::MultiFab dummy(grids[lev],dmap[lev],1,0);
+
931  for (amrex::MFIter mfi(dummy); mfi.isValid(); ++mfi)
+
932  {
+
933  const amrex::Box& bx = mfi.validbox();
+
934  if (bx.contains(cell)) {
+
935  sampleptlog[i] = std::make_unique<std::fstream>();
+
936  sampleptlog[i]->open(filename.c_str(),std::ios::out|std::ios::app);
+
937  if (!sampleptlog[i]->good()) {
+
938  amrex::FileOpenFailed(filename);
+
939  }
+
940  }
+
941  }
+
942  amrex::ParallelDescriptor::Barrier("ERF::setRecordSamplePointInfo");
+
943  }
@@ -8576,16 +8594,16 @@

116  }
117  }
118 }
-
ERF::NumSampleLineLogs
AMREX_FORCE_INLINE int NumSampleLineLogs() noexcept
Definition: ERF.H:861
+
ERF::NumSampleLineLogs
AMREX_FORCE_INLINE int NumSampleLineLogs() noexcept
Definition: ERF.H:866
ERF::volWgtSumMF
amrex::Real volWgtSumMF(int lev, const amrex::MultiFab &mf, int comp, bool local, bool finemask)
Definition: ERF_WriteScalarProfiles.cpp:258
-
ERF::NumSamplePointLogs
AMREX_FORCE_INLINE int NumSamplePointLogs() noexcept
Definition: ERF.H:847
-
ERF::SampleLine
amrex::IntVect & SampleLine(int i)
Definition: ERF.H:880
-
ERF::NumSamplePoints
AMREX_FORCE_INLINE int NumSamplePoints() noexcept
Definition: ERF.H:874
-
ERF::NumSampleLines
AMREX_FORCE_INLINE int NumSampleLines() noexcept
Definition: ERF.H:887
-
ERF::SamplePoint
amrex::IntVect & SamplePoint(int i)
Definition: ERF.H:867
+
ERF::NumSamplePointLogs
AMREX_FORCE_INLINE int NumSamplePointLogs() noexcept
Definition: ERF.H:852
+
ERF::SampleLine
amrex::IntVect & SampleLine(int i)
Definition: ERF.H:885
+
ERF::NumSamplePoints
AMREX_FORCE_INLINE int NumSamplePoints() noexcept
Definition: ERF.H:879
+
ERF::NumSampleLines
AMREX_FORCE_INLINE int NumSampleLines() noexcept
Definition: ERF.H:892
+
ERF::SamplePoint
amrex::IntVect & SamplePoint(int i)
Definition: ERF.H:872
ERF::sample_points
void sample_points(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &mf)
Definition: ERF_WriteScalarProfiles.cpp:129
-
ERF::DataLog
AMREX_FORCE_INLINE std::ostream & DataLog(int i)
Definition: ERF.H:826
-
ERF::NumDataLogs
AMREX_FORCE_INLINE int NumDataLogs() noexcept
Definition: ERF.H:833
+
ERF::DataLog
AMREX_FORCE_INLINE std::ostream & DataLog(int i)
Definition: ERF.H:831
+
ERF::NumDataLogs
AMREX_FORCE_INLINE int NumDataLogs() noexcept
Definition: ERF.H:838
ERF::sample_lines
void sample_lines(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &mf)
Definition: ERF_WriteScalarProfiles.cpp:167
@@ -8716,7 +8734,7 @@

93  }
94 }
ERF::Advance
void Advance(int lev, amrex::Real time, amrex::Real dt_lev, int iteration, int ncycle)
Definition: ERF_Advance.cpp:17
-
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1238
+
ERF::Define_ERFFillPatchers
void Define_ERFFillPatchers(int lev)
Definition: ERF.cpp:1256
@@ -9513,82 +9531,82 @@

-
1014 {
-
1015  BL_ASSERT(nlevels <= bArray.size());
-
1016  BL_ASSERT(nlevels <= ref_ratio.size()+1);
-
1017  BL_ASSERT(nlevels <= level_steps.size());
-
1018 
-
1019  HeaderFile.precision(17);
-
1020 
-
1021  // ---- this is the generic plot file type name
-
1022  HeaderFile << versionName << '\n';
-
1023 
-
1024  HeaderFile << varnames.size() << '\n';
-
1025 
-
1026  for (int ivar = 0; ivar < varnames.size(); ++ivar) {
-
1027  HeaderFile << varnames[ivar] << "\n";
-
1028  }
-
1029  HeaderFile << AMREX_SPACEDIM << '\n';
-
1030  HeaderFile << time << '\n';
-
1031  HeaderFile << finest_level << '\n';
-
1032  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
-
1033  HeaderFile << geom[0].ProbLo(i) << ' ';
-
1034  }
-
1035  HeaderFile << '\n';
-
1036  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
-
1037  HeaderFile << geom[0].ProbHi(i) << ' ';
-
1038  }
-
1039  HeaderFile << '\n';
-
1040  for (int i = 0; i < finest_level; ++i) {
-
1041  HeaderFile << ref_ratio[i][0] << ' ';
-
1042  }
-
1043  HeaderFile << '\n';
-
1044  for (int i = 0; i <= finest_level; ++i) {
-
1045  HeaderFile << geom[i].Domain() << ' ';
-
1046  }
-
1047  HeaderFile << '\n';
-
1048  for (int i = 0; i <= finest_level; ++i) {
-
1049  HeaderFile << level_steps[i] << ' ';
-
1050  }
-
1051  HeaderFile << '\n';
-
1052  for (int i = 0; i <= finest_level; ++i) {
-
1053  for (int k = 0; k < AMREX_SPACEDIM; ++k) {
-
1054  HeaderFile << geom[i].CellSize()[k] << ' ';
-
1055  }
-
1056  HeaderFile << '\n';
-
1057  }
-
1058  HeaderFile << (int) geom[0].Coord() << '\n';
-
1059  HeaderFile << "0\n";
-
1060 
-
1061  for (int level = 0; level <= finest_level; ++level) {
-
1062  HeaderFile << level << ' ' << bArray[level].size() << ' ' << time << '\n';
-
1063  HeaderFile << level_steps[level] << '\n';
-
1064 
-
1065  const IntVect& domain_lo = geom[level].Domain().smallEnd();
-
1066  for (int i = 0; i < bArray[level].size(); ++i)
-
1067  {
-
1068  // Need to shift because the RealBox ctor we call takes the
-
1069  // physical location of index (0,0,0). This does not affect
-
1070  // the usual cases where the domain index starts with 0.
-
1071  const Box& b = shift(bArray[level][i], -domain_lo);
-
1072  RealBox loc = RealBox(b, geom[level].CellSize(), geom[level].ProbLo());
-
1073  for (int n = 0; n < AMREX_SPACEDIM; ++n) {
-
1074  HeaderFile << loc.lo(n) << ' ' << loc.hi(n) << '\n';
-
1075  }
-
1076  }
+
1031 {
+
1032  BL_ASSERT(nlevels <= bArray.size());
+
1033  BL_ASSERT(nlevels <= ref_ratio.size()+1);
+
1034  BL_ASSERT(nlevels <= level_steps.size());
+
1035 
+
1036  HeaderFile.precision(17);
+
1037 
+
1038  // ---- this is the generic plot file type name
+
1039  HeaderFile << versionName << '\n';
+
1040 
+
1041  HeaderFile << varnames.size() << '\n';
+
1042 
+
1043  for (int ivar = 0; ivar < varnames.size(); ++ivar) {
+
1044  HeaderFile << varnames[ivar] << "\n";
+
1045  }
+
1046  HeaderFile << AMREX_SPACEDIM << '\n';
+
1047  HeaderFile << time << '\n';
+
1048  HeaderFile << finest_level << '\n';
+
1049  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
+
1050  HeaderFile << geom[0].ProbLo(i) << ' ';
+
1051  }
+
1052  HeaderFile << '\n';
+
1053  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
+
1054  HeaderFile << geom[0].ProbHi(i) << ' ';
+
1055  }
+
1056  HeaderFile << '\n';
+
1057  for (int i = 0; i < finest_level; ++i) {
+
1058  HeaderFile << ref_ratio[i][0] << ' ';
+
1059  }
+
1060  HeaderFile << '\n';
+
1061  for (int i = 0; i <= finest_level; ++i) {
+
1062  HeaderFile << geom[i].Domain() << ' ';
+
1063  }
+
1064  HeaderFile << '\n';
+
1065  for (int i = 0; i <= finest_level; ++i) {
+
1066  HeaderFile << level_steps[i] << ' ';
+
1067  }
+
1068  HeaderFile << '\n';
+
1069  for (int i = 0; i <= finest_level; ++i) {
+
1070  for (int k = 0; k < AMREX_SPACEDIM; ++k) {
+
1071  HeaderFile << geom[i].CellSize()[k] << ' ';
+
1072  }
+
1073  HeaderFile << '\n';
+
1074  }
+
1075  HeaderFile << (int) geom[0].Coord() << '\n';
+
1076  HeaderFile << "0\n";
1077 
-
1078  HeaderFile << MultiFabHeaderPath(level, levelPrefix, mfPrefix) << '\n';
-
1079  }
-
1080  HeaderFile << "1" << "\n";
-
1081  HeaderFile << "3" << "\n";
-
1082  HeaderFile << "amrexvec_nu_x" << "\n";
-
1083  HeaderFile << "amrexvec_nu_y" << "\n";
-
1084  HeaderFile << "amrexvec_nu_z" << "\n";
-
1085  std::string mf_nodal_prefix = "Nu_nd";
-
1086  for (int level = 0; level <= finest_level; ++level) {
-
1087  HeaderFile << MultiFabHeaderPath(level, levelPrefix, mf_nodal_prefix) << '\n';
-
1088  }
-
1089 }
+
1078  for (int level = 0; level <= finest_level; ++level) {
+
1079  HeaderFile << level << ' ' << bArray[level].size() << ' ' << time << '\n';
+
1080  HeaderFile << level_steps[level] << '\n';
+
1081 
+
1082  const IntVect& domain_lo = geom[level].Domain().smallEnd();
+
1083  for (int i = 0; i < bArray[level].size(); ++i)
+
1084  {
+
1085  // Need to shift because the RealBox ctor we call takes the
+
1086  // physical location of index (0,0,0). This does not affect
+
1087  // the usual cases where the domain index starts with 0.
+
1088  const Box& b = shift(bArray[level][i], -domain_lo);
+
1089  RealBox loc = RealBox(b, geom[level].CellSize(), geom[level].ProbLo());
+
1090  for (int n = 0; n < AMREX_SPACEDIM; ++n) {
+
1091  HeaderFile << loc.lo(n) << ' ' << loc.hi(n) << '\n';
+
1092  }
+
1093  }
+
1094 
+
1095  HeaderFile << MultiFabHeaderPath(level, levelPrefix, mfPrefix) << '\n';
+
1096  }
+
1097  HeaderFile << "1" << "\n";
+
1098  HeaderFile << "3" << "\n";
+
1099  HeaderFile << "amrexvec_nu_x" << "\n";
+
1100  HeaderFile << "amrexvec_nu_y" << "\n";
+
1101  HeaderFile << "amrexvec_nu_z" << "\n";
+
1102  std::string mf_nodal_prefix = "Nu_nd";
+
1103  for (int level = 0; level <= finest_level; ++level) {
+
1104  HeaderFile << MultiFabHeaderPath(level, levelPrefix, mf_nodal_prefix) << '\n';
+
1105  }
+
1106 }
Coord
Coord
Definition: DataStruct.H:23
@@ -9733,7 +9751,7 @@

130  amrex::ParmParse::dumpTable(jobInfoFile, true);
131  jobInfoFile.close();
132 }
-
ERF::getCPUTime
static amrex::Real getCPUTime()
Definition: ERF.H:896
+
ERF::getCPUTime
static amrex::Real getCPUTime()
Definition: ERF.H:901
inputs_name
std::string inputs_name
Definition: main.cpp:13
Here is the call graph for this function:
@@ -9826,80 +9844,80 @@

-
930 {
-
931  BL_PROFILE("WriteMultiLevelPlotfileWithTerrain()");
-
932 
-
933  BL_ASSERT(nlevels <= mf.size());
-
934  BL_ASSERT(nlevels <= ref_ratio.size()+1);
-
935  BL_ASSERT(nlevels <= level_steps.size());
-
936  BL_ASSERT(mf[0]->nComp() == varnames.size());
-
937 
-
938  bool callBarrier(false);
-
939  PreBuildDirectorHierarchy(plotfilename, levelPrefix, nlevels, callBarrier);
-
940  if (!extra_dirs.empty()) {
-
941  for (const auto& d : extra_dirs) {
-
942  const std::string ed = plotfilename+"/"+d;
-
943  PreBuildDirectorHierarchy(ed, levelPrefix, nlevels, callBarrier);
-
944  }
-
945  }
-
946  ParallelDescriptor::Barrier();
-
947 
-
948  if (ParallelDescriptor::MyProc() == ParallelDescriptor::NProcs()-1) {
-
949  Vector<BoxArray> boxArrays(nlevels);
-
950  for(int level(0); level < boxArrays.size(); ++level) {
-
951  boxArrays[level] = mf[level]->boxArray();
-
952  }
-
953 
-
954  auto f = [=]() {
-
955  VisMF::IO_Buffer io_buffer(VisMF::IO_Buffer_Size);
-
956  std::string HeaderFileName(plotfilename + "/Header");
-
957  std::ofstream HeaderFile;
-
958  HeaderFile.rdbuf()->pubsetbuf(io_buffer.dataPtr(), io_buffer.size());
-
959  HeaderFile.open(HeaderFileName.c_str(), std::ofstream::out |
-
960  std::ofstream::trunc |
-
961  std::ofstream::binary);
-
962  if( ! HeaderFile.good()) FileOpenFailed(HeaderFileName);
-
963  WriteGenericPlotfileHeaderWithTerrain(HeaderFile, nlevels, boxArrays, varnames,
-
964  time, level_steps, versionName,
-
965  levelPrefix, mfPrefix);
-
966  };
-
967 
-
968  if (AsyncOut::UseAsyncOut()) {
-
969  AsyncOut::Submit(std::move(f));
-
970  } else {
-
971  f();
-
972  }
-
973  }
-
974 
-
975  std::string mf_nodal_prefix = "Nu_nd";
-
976  for (int level = 0; level <= finest_level; ++level)
-
977  {
-
978  if (AsyncOut::UseAsyncOut()) {
-
979  VisMF::AsyncWrite(*mf[level],
-
980  MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mfPrefix),
-
981  true);
-
982  VisMF::AsyncWrite(*mf_nd[level],
-
983  MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mf_nodal_prefix),
-
984  true);
-
985  } else {
-
986  const MultiFab* data;
-
987  std::unique_ptr<MultiFab> mf_tmp;
-
988  if (mf[level]->nGrowVect() != 0) {
-
989  mf_tmp = std::make_unique<MultiFab>(mf[level]->boxArray(),
-
990  mf[level]->DistributionMap(),
-
991  mf[level]->nComp(), 0, MFInfo(),
-
992  mf[level]->Factory());
-
993  MultiFab::Copy(*mf_tmp, *mf[level], 0, 0, mf[level]->nComp(), 0);
-
994  data = mf_tmp.get();
-
995  } else {
-
996  data = mf[level];
-
997  }
-
998  VisMF::Write(*data , MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mfPrefix));
-
999  VisMF::Write(*mf_nd[level], MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mf_nodal_prefix));
-
1000  }
-
1001  }
-
1002 }
-
ERF::WriteGenericPlotfileHeaderWithTerrain
void WriteGenericPlotfileHeaderWithTerrain(std::ostream &HeaderFile, int nlevels, const amrex::Vector< amrex::BoxArray > &bArray, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName, const std::string &levelPrefix, const std::string &mfPrefix) const
Definition: Plotfile.cpp:1005
+
947 {
+
948  BL_PROFILE("WriteMultiLevelPlotfileWithTerrain()");
+
949 
+
950  BL_ASSERT(nlevels <= mf.size());
+
951  BL_ASSERT(nlevels <= ref_ratio.size()+1);
+
952  BL_ASSERT(nlevels <= level_steps.size());
+
953  BL_ASSERT(mf[0]->nComp() == varnames.size());
+
954 
+
955  bool callBarrier(false);
+
956  PreBuildDirectorHierarchy(plotfilename, levelPrefix, nlevels, callBarrier);
+
957  if (!extra_dirs.empty()) {
+
958  for (const auto& d : extra_dirs) {
+
959  const std::string ed = plotfilename+"/"+d;
+
960  PreBuildDirectorHierarchy(ed, levelPrefix, nlevels, callBarrier);
+
961  }
+
962  }
+
963  ParallelDescriptor::Barrier();
+
964 
+
965  if (ParallelDescriptor::MyProc() == ParallelDescriptor::NProcs()-1) {
+
966  Vector<BoxArray> boxArrays(nlevels);
+
967  for(int level(0); level < boxArrays.size(); ++level) {
+
968  boxArrays[level] = mf[level]->boxArray();
+
969  }
+
970 
+
971  auto f = [=]() {
+
972  VisMF::IO_Buffer io_buffer(VisMF::IO_Buffer_Size);
+
973  std::string HeaderFileName(plotfilename + "/Header");
+
974  std::ofstream HeaderFile;
+
975  HeaderFile.rdbuf()->pubsetbuf(io_buffer.dataPtr(), io_buffer.size());
+
976  HeaderFile.open(HeaderFileName.c_str(), std::ofstream::out |
+
977  std::ofstream::trunc |
+
978  std::ofstream::binary);
+
979  if( ! HeaderFile.good()) FileOpenFailed(HeaderFileName);
+
980  WriteGenericPlotfileHeaderWithTerrain(HeaderFile, nlevels, boxArrays, varnames,
+
981  time, level_steps, versionName,
+
982  levelPrefix, mfPrefix);
+
983  };
+
984 
+
985  if (AsyncOut::UseAsyncOut()) {
+
986  AsyncOut::Submit(std::move(f));
+
987  } else {
+
988  f();
+
989  }
+
990  }
+
991 
+
992  std::string mf_nodal_prefix = "Nu_nd";
+
993  for (int level = 0; level <= finest_level; ++level)
+
994  {
+
995  if (AsyncOut::UseAsyncOut()) {
+
996  VisMF::AsyncWrite(*mf[level],
+
997  MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mfPrefix),
+
998  true);
+
999  VisMF::AsyncWrite(*mf_nd[level],
+
1000  MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mf_nodal_prefix),
+
1001  true);
+
1002  } else {
+
1003  const MultiFab* data;
+
1004  std::unique_ptr<MultiFab> mf_tmp;
+
1005  if (mf[level]->nGrowVect() != 0) {
+
1006  mf_tmp = std::make_unique<MultiFab>(mf[level]->boxArray(),
+
1007  mf[level]->DistributionMap(),
+
1008  mf[level]->nComp(), 0, MFInfo(),
+
1009  mf[level]->Factory());
+
1010  MultiFab::Copy(*mf_tmp, *mf[level], 0, 0, mf[level]->nComp(), 0);
+
1011  data = mf_tmp.get();
+
1012  } else {
+
1013  data = mf[level];
+
1014  }
+
1015  VisMF::Write(*data , MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mfPrefix));
+
1016  VisMF::Write(*mf_nd[level], MultiFabFileFullPrefix(level, plotfilename, levelPrefix, mf_nodal_prefix));
+
1017  }
+
1018  }
+
1019 }
+
ERF::WriteGenericPlotfileHeaderWithTerrain
void WriteGenericPlotfileHeaderWithTerrain(std::ostream &HeaderFile, int nlevels, const amrex::Vector< amrex::BoxArray > &bArray, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName, const std::string &levelPrefix, const std::string &mfPrefix) const
Definition: Plotfile.cpp:1022
@@ -10381,377 +10399,394 @@

544  mf_comp ++;
545  }
546 
-
547 #if defined(ERF_USE_MOISTURE)
-
548  calculate_derived("qt", derived::erf_derQt);
-
549  calculate_derived("qp", derived::erf_derQp);
-
550 
-
551  MultiFab qv_mf(qmoist[lev], make_alias, 0, 1);
-
552  MultiFab qc_mf(qmoist[lev], make_alias, 1, 1);
-
553  MultiFab qi_mf(qmoist[lev], make_alias, 2, 1);
-
554  MultiFab qr_mf(qmoist[lev], make_alias, 3, 1);
-
555  MultiFab qs_mf(qmoist[lev], make_alias, 4, 1);
-
556  MultiFab qg_mf(qmoist[lev], make_alias, 5, 1);
-
557 
-
558  if (containerHasElement(plot_var_names, "qv"))
-
559  {
-
560  MultiFab::Copy(mf[lev],qv_mf,0,mf_comp,1,0);
-
561  mf_comp += 1;
+
547  if (containerHasElement(plot_var_names, "Kmv")) {
+
548  MultiFab::Copy(mf[lev],*eddyDiffs_lev[lev],EddyDiff::Mom_v,mf_comp,1,0);
+
549  mf_comp ++;
+
550  }
+
551  if (containerHasElement(plot_var_names, "Kmh")) {
+
552  MultiFab::Copy(mf[lev],*eddyDiffs_lev[lev],EddyDiff::Mom_h,mf_comp,1,0);
+
553  mf_comp ++;
+
554  }
+
555  if (containerHasElement(plot_var_names, "Khv")) {
+
556  MultiFab::Copy(mf[lev],*eddyDiffs_lev[lev],EddyDiff::Theta_v,mf_comp,1,0);
+
557  mf_comp ++;
+
558  }
+
559  if (containerHasElement(plot_var_names, "Khh")) {
+
560  MultiFab::Copy(mf[lev],*eddyDiffs_lev[lev],EddyDiff::Theta_h,mf_comp,1,0);
+
561  mf_comp ++;
562  }
563 
-
564  if (containerHasElement(plot_var_names, "qc"))
-
565  {
-
566  MultiFab::Copy(mf[lev],qc_mf,0,mf_comp,1,0);
-
567  mf_comp += 1;
-
568  }
-
569 
-
570  if (containerHasElement(plot_var_names, "qi"))
-
571  {
-
572  MultiFab::Copy(mf[lev],qi_mf,0,mf_comp,1,0);
-
573  mf_comp += 1;
-
574  }
-
575 
-
576  if (containerHasElement(plot_var_names, "qrain"))
-
577  {
-
578  MultiFab::Copy(mf[lev],qr_mf,0,mf_comp,1,0);
-
579  mf_comp += 1;
-
580  }
-
581 
-
582  if (containerHasElement(plot_var_names, "qsnow"))
-
583  {
-
584  MultiFab::Copy(mf[lev],qs_mf,0,mf_comp,1,0);
-
585  mf_comp += 1;
-
586  }
-
587 
-
588  if (containerHasElement(plot_var_names, "qgraup"))
-
589  {
-
590  MultiFab::Copy(mf[lev],qg_mf,0,mf_comp,1,0);
-
591  mf_comp += 1;
-
592  }
-
593 #elif defined(ERF_USE_WARM_NO_PRECIP)
-
594  calculate_derived("qv", derived::erf_derQv);
-
595  calculate_derived("qc", derived::erf_derQc);
-
596 #endif
-
597 
-
598 #ifdef ERF_USE_PARTICLES
-
599  if (containerHasElement(plot_var_names, "particle_count"))
+
564 #if defined(ERF_USE_MOISTURE)
+
565  calculate_derived("qt", derived::erf_derQt);
+
566  calculate_derived("qp", derived::erf_derQp);
+
567 
+
568  MultiFab qv_mf(qmoist[lev], make_alias, 0, 1);
+
569  MultiFab qc_mf(qmoist[lev], make_alias, 1, 1);
+
570  MultiFab qi_mf(qmoist[lev], make_alias, 2, 1);
+
571  MultiFab qr_mf(qmoist[lev], make_alias, 3, 1);
+
572  MultiFab qs_mf(qmoist[lev], make_alias, 4, 1);
+
573  MultiFab qg_mf(qmoist[lev], make_alias, 5, 1);
+
574 
+
575  if (containerHasElement(plot_var_names, "qv"))
+
576  {
+
577  MultiFab::Copy(mf[lev],qv_mf,0,mf_comp,1,0);
+
578  mf_comp += 1;
+
579  }
+
580 
+
581  if (containerHasElement(plot_var_names, "qc"))
+
582  {
+
583  MultiFab::Copy(mf[lev],qc_mf,0,mf_comp,1,0);
+
584  mf_comp += 1;
+
585  }
+
586 
+
587  if (containerHasElement(plot_var_names, "qi"))
+
588  {
+
589  MultiFab::Copy(mf[lev],qi_mf,0,mf_comp,1,0);
+
590  mf_comp += 1;
+
591  }
+
592 
+
593  if (containerHasElement(plot_var_names, "qrain"))
+
594  {
+
595  MultiFab::Copy(mf[lev],qr_mf,0,mf_comp,1,0);
+
596  mf_comp += 1;
+
597  }
+
598 
+
599  if (containerHasElement(plot_var_names, "qsnow"))
600  {
-
601  MultiFab temp_dat(mf[lev].boxArray(), mf[lev].DistributionMap(), 1, 0);
-
602  temp_dat.setVal(0);
-
603  tracer_particles->Increment(temp_dat, lev);
-
604  MultiFab::Copy(mf[lev], temp_dat, 0, mf_comp, 1, 0);
-
605  mf_comp += 1;
-
606  }
-
607 #endif
-
608 
-
609 #ifdef ERF_COMPUTE_ERROR
-
610  // Next, check for error in velocities and if desired, output them -- note we output none or all, not just some
-
611  if (containerHasElement(plot_var_names, "xvel_err") ||
-
612  containerHasElement(plot_var_names, "yvel_err") ||
-
613  containerHasElement(plot_var_names, "zvel_err"))
-
614  {
-
615  //
-
616  // Moving terrain ANALYTICAL
-
617  //
-
618  Real H = geom[lev].ProbHi()[2];
-
619  Real Ampl = 0.16;
-
620  Real wavelength = 100.;
-
621  Real kp = 2. * PI / wavelength;
-
622  Real g = CONST_GRAV;
-
623  Real omega = std::sqrt(g * kp);
-
624  Real omega_t = omega * t_new[lev];
+
601  MultiFab::Copy(mf[lev],qs_mf,0,mf_comp,1,0);
+
602  mf_comp += 1;
+
603  }
+
604 
+
605  if (containerHasElement(plot_var_names, "qgraup"))
+
606  {
+
607  MultiFab::Copy(mf[lev],qg_mf,0,mf_comp,1,0);
+
608  mf_comp += 1;
+
609  }
+
610 #elif defined(ERF_USE_WARM_NO_PRECIP)
+
611  calculate_derived("qv", derived::erf_derQv);
+
612  calculate_derived("qc", derived::erf_derQc);
+
613 #endif
+
614 
+
615 #ifdef ERF_USE_PARTICLES
+
616  if (containerHasElement(plot_var_names, "particle_count"))
+
617  {
+
618  MultiFab temp_dat(mf[lev].boxArray(), mf[lev].DistributionMap(), 1, 0);
+
619  temp_dat.setVal(0);
+
620  tracer_particles->Increment(temp_dat, lev);
+
621  MultiFab::Copy(mf[lev], temp_dat, 0, mf_comp, 1, 0);
+
622  mf_comp += 1;
+
623  }
+
624 #endif
625 
-
626  const auto dx = geom[lev].CellSizeArray();
-
627 
-
628 #ifdef _OPENMP
-
629 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
-
630 #endif
-
631  for (MFIter mfi(mf[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
-
632  {
-
633  const Box& bx = mfi.validbox();
-
634  Box xbx(bx); xbx.surroundingNodes(0);
-
635  const Array4<Real> xvel_arr = vars_new[lev][Vars::xvel].array(mfi);
-
636  const Array4<Real> zvel_arr = vars_new[lev][Vars::zvel].array(mfi);
-
637 
-
638  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
-
639 
-
640  ParallelFor(xbx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
641  {
-
642  Real x = i * dx[0];
-
643  Real z = 0.25 * (z_nd(i,j,k) + z_nd(i,j+1,k) + z_nd(i,j,k+1) + z_nd(i,j+1,k+1));
+
626 #ifdef ERF_COMPUTE_ERROR
+
627  // Next, check for error in velocities and if desired, output them -- note we output none or all, not just some
+
628  if (containerHasElement(plot_var_names, "xvel_err") ||
+
629  containerHasElement(plot_var_names, "yvel_err") ||
+
630  containerHasElement(plot_var_names, "zvel_err"))
+
631  {
+
632  //
+
633  // Moving terrain ANALYTICAL
+
634  //
+
635  Real H = geom[lev].ProbHi()[2];
+
636  Real Ampl = 0.16;
+
637  Real wavelength = 100.;
+
638  Real kp = 2. * PI / wavelength;
+
639  Real g = CONST_GRAV;
+
640  Real omega = std::sqrt(g * kp);
+
641  Real omega_t = omega * t_new[lev];
+
642 
+
643  const auto dx = geom[lev].CellSizeArray();
644 
-
645  Real z_base = Ampl * std::sin(kp * x - omega_t);
-
646  z -= z_base;
-
647 
-
648  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
-
649 
-
650  xvel_arr(i,j,k) -= -Ampl * omega * fac * std::sin(kp * x - omega_t);
-
651  });
-
652 
-
653  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
654  {
-
655  Real x = (i + 0.5) * dx[0];
-
656  Real z = 0.25 * ( z_nd(i,j,k) + z_nd(i+1,j,k) + z_nd(i,j+1,k) + z_nd(i+1,j+1,k));
-
657 
-
658  Real z_base = Ampl * std::sin(kp * x - omega_t);
-
659  z -= z_base;
-
660 
-
661  Real fac = std::sinh( kp * (z - H) ) / std::sinh(kp * H);
-
662 
-
663  zvel_arr(i,j,k) -= Ampl * omega * fac * std::cos(kp * x - omega_t);
-
664  });
-
665  }
+
645 #ifdef _OPENMP
+
646 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
+
647 #endif
+
648  for (MFIter mfi(mf[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
+
649  {
+
650  const Box& bx = mfi.validbox();
+
651  Box xbx(bx); xbx.surroundingNodes(0);
+
652  const Array4<Real> xvel_arr = vars_new[lev][Vars::xvel].array(mfi);
+
653  const Array4<Real> zvel_arr = vars_new[lev][Vars::zvel].array(mfi);
+
654 
+
655  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
+
656 
+
657  ParallelFor(xbx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
658  {
+
659  Real x = i * dx[0];
+
660  Real z = 0.25 * (z_nd(i,j,k) + z_nd(i,j+1,k) + z_nd(i,j,k+1) + z_nd(i,j+1,k+1));
+
661 
+
662  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
663  z -= z_base;
+
664 
+
665  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
666 
-
667  MultiFab temp_mf(mf[lev].boxArray(), mf[lev].DistributionMap(), AMREX_SPACEDIM, 0);
-
668  average_face_to_cellcenter(temp_mf,0,
-
669  Array<const MultiFab*,3>{&vars_new[lev][Vars::xvel],&vars_new[lev][Vars::yvel],&vars_new[lev][Vars::zvel]});
-
670 
-
671  if (containerHasElement(plot_var_names, "xvel_err")) {
-
672  MultiFab::Copy(mf[lev],temp_mf,0,mf_comp,1,0);
-
673  mf_comp += 1;
-
674  }
-
675  if (containerHasElement(plot_var_names, "yvel_err")) {
-
676  MultiFab::Copy(mf[lev],temp_mf,1,mf_comp,1,0);
-
677  mf_comp += 1;
-
678  }
-
679  if (containerHasElement(plot_var_names, "zvel_err")) {
-
680  MultiFab::Copy(mf[lev],temp_mf,2,mf_comp,1,0);
-
681  mf_comp += 1;
+
667  xvel_arr(i,j,k) -= -Ampl * omega * fac * std::sin(kp * x - omega_t);
+
668  });
+
669 
+
670  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
671  {
+
672  Real x = (i + 0.5) * dx[0];
+
673  Real z = 0.25 * ( z_nd(i,j,k) + z_nd(i+1,j,k) + z_nd(i,j+1,k) + z_nd(i+1,j+1,k));
+
674 
+
675  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
676  z -= z_base;
+
677 
+
678  Real fac = std::sinh( kp * (z - H) ) / std::sinh(kp * H);
+
679 
+
680  zvel_arr(i,j,k) -= Ampl * omega * fac * std::cos(kp * x - omega_t);
+
681  });
682  }
683 
-
684  // Now restore the velocities to what they were
-
685 #ifdef _OPENMP
-
686 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
-
687 #endif
-
688  for (MFIter mfi(mf[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
-
689  {
-
690  const Box& bx = mfi.validbox();
-
691  Box xbx(bx); xbx.surroundingNodes(0);
-
692 
-
693  const Array4<Real> xvel_arr = vars_new[lev][Vars::xvel].array(mfi);
-
694  const Array4<Real> zvel_arr = vars_new[lev][Vars::zvel].array(mfi);
-
695 
-
696  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
-
697 
-
698  ParallelFor(xbx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
699  {
-
700  Real x = i * dx[0];
-
701  Real z = 0.25 * (z_nd(i,j,k) + z_nd(i,j+1,k) + z_nd(i,j,k+1) + z_nd(i,j+1,k+1));
-
702  Real z_base = Ampl * std::sin(kp * x - omega_t);
-
703 
-
704  z -= z_base;
-
705 
-
706  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
-
707  xvel_arr(i,j,k) += -Ampl * omega * fac * std::sin(kp * x - omega_t);
-
708  });
-
709  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
-
710  {
-
711  Real x = (i + 0.5) * dx[0];
-
712  Real z = 0.25 * ( z_nd(i,j,k) + z_nd(i+1,j,k) + z_nd(i,j+1,k) + z_nd(i+1,j+1,k));
-
713  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
684  MultiFab temp_mf(mf[lev].boxArray(), mf[lev].DistributionMap(), AMREX_SPACEDIM, 0);
+
685  average_face_to_cellcenter(temp_mf,0,
+
686  Array<const MultiFab*,3>{&vars_new[lev][Vars::xvel],&vars_new[lev][Vars::yvel],&vars_new[lev][Vars::zvel]});
+
687 
+
688  if (containerHasElement(plot_var_names, "xvel_err")) {
+
689  MultiFab::Copy(mf[lev],temp_mf,0,mf_comp,1,0);
+
690  mf_comp += 1;
+
691  }
+
692  if (containerHasElement(plot_var_names, "yvel_err")) {
+
693  MultiFab::Copy(mf[lev],temp_mf,1,mf_comp,1,0);
+
694  mf_comp += 1;
+
695  }
+
696  if (containerHasElement(plot_var_names, "zvel_err")) {
+
697  MultiFab::Copy(mf[lev],temp_mf,2,mf_comp,1,0);
+
698  mf_comp += 1;
+
699  }
+
700 
+
701  // Now restore the velocities to what they were
+
702 #ifdef _OPENMP
+
703 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
+
704 #endif
+
705  for (MFIter mfi(mf[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi)
+
706  {
+
707  const Box& bx = mfi.validbox();
+
708  Box xbx(bx); xbx.surroundingNodes(0);
+
709 
+
710  const Array4<Real> xvel_arr = vars_new[lev][Vars::xvel].array(mfi);
+
711  const Array4<Real> zvel_arr = vars_new[lev][Vars::zvel].array(mfi);
+
712 
+
713  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
714 
-
715  z -= z_base;
-
716  Real fac = std::sinh( kp * (z - H) ) / std::sinh(kp * H);
-
717 
-
718  zvel_arr(i,j,k) += Ampl * omega * fac * std::cos(kp * x - omega_t);
-
719  });
-
720  }
-
721  } // end xvel_err, yvel_err, zvel_err
+
715  ParallelFor(xbx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
716  {
+
717  Real x = i * dx[0];
+
718  Real z = 0.25 * (z_nd(i,j,k) + z_nd(i,j+1,k) + z_nd(i,j,k+1) + z_nd(i,j+1,k+1));
+
719  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
720 
+
721  z -= z_base;
722 
-
723  if (containerHasElement(plot_var_names, "pp_err"))
-
724  {
-
725  // Moving terrain ANALYTICAL
-
726 #ifdef _OPENMP
-
727 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
-
728 #endif
-
729  for ( MFIter mfi(mf[lev],TilingIfNotGPU()); mfi.isValid(); ++mfi)
-
730  {
-
731  const Box& bx = mfi.tilebox();
-
732  const Array4<Real>& derdat = mf[lev].array(mfi);
-
733  const Array4<Real const>& p0_arr = p_hse.const_array(mfi);
-
734  const Array4<Real const>& S_arr = vars_new[lev][Vars::cons].const_array(mfi);
-
735 
-
736  const auto dx = geom[lev].CellSizeArray();
-
737  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
-
738  const Array4<Real const>& r0_arr = r_hse.const_array(mfi);
+
723  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
+
724  xvel_arr(i,j,k) += -Ampl * omega * fac * std::sin(kp * x - omega_t);
+
725  });
+
726  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k)
+
727  {
+
728  Real x = (i + 0.5) * dx[0];
+
729  Real z = 0.25 * ( z_nd(i,j,k) + z_nd(i+1,j,k) + z_nd(i,j+1,k) + z_nd(i+1,j+1,k));
+
730  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
731 
+
732  z -= z_base;
+
733  Real fac = std::sinh( kp * (z - H) ) / std::sinh(kp * H);
+
734 
+
735  zvel_arr(i,j,k) += Ampl * omega * fac * std::cos(kp * x - omega_t);
+
736  });
+
737  }
+
738  } // end xvel_err, yvel_err, zvel_err
739 
-
740  Real H = geom[lev].ProbHi()[2];
-
741  Real Ampl = 0.16;
-
742  Real wavelength = 100.;
-
743  Real kp = 2. * PI / wavelength;
-
744  Real g = CONST_GRAV;
-
745  Real omega = std::sqrt(g * kp);
-
746  Real omega_t = omega * t_new[lev];
-
747 
-
748  ParallelFor(bx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
-
749  {
-
750  const Real rhotheta = S_arr(i,j,k,RhoTheta_comp);
-
751  derdat(i, j, k, mf_comp) = getPgivenRTh(rhotheta) - p0_arr(i,j,k);
+
740  if (containerHasElement(plot_var_names, "pp_err"))
+
741  {
+
742  // Moving terrain ANALYTICAL
+
743 #ifdef _OPENMP
+
744 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
+
745 #endif
+
746  for ( MFIter mfi(mf[lev],TilingIfNotGPU()); mfi.isValid(); ++mfi)
+
747  {
+
748  const Box& bx = mfi.tilebox();
+
749  const Array4<Real>& derdat = mf[lev].array(mfi);
+
750  const Array4<Real const>& p0_arr = p_hse.const_array(mfi);
+
751  const Array4<Real const>& S_arr = vars_new[lev][Vars::cons].const_array(mfi);
752 
-
753  Real rho_hse = r0_arr(i,j,k);
-
754 
-
755  Real x = (i + 0.5) * dx[0];
-
756  Real z = 0.125 * ( z_nd(i,j,k ) + z_nd(i+1,j,k ) + z_nd(i,j+1,k ) + z_nd(i+1,j+1,k )
-
757  +z_nd(i,j,k+1) + z_nd(i+1,j,k+1) + z_nd(i,j+1,k+1) + z_nd(i+1,j+1,k+1) );
-
758  Real z_base = Ampl * std::sin(kp * x - omega_t);
-
759 
-
760  z -= z_base;
-
761  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
-
762  Real pprime_exact = -(Ampl * omega * omega / kp) * fac *
-
763  std::sin(kp * x - omega_t) * r0_arr(i,j,k);
+
753  const auto dx = geom[lev].CellSizeArray();
+
754  const Array4<Real const>& z_nd = z_phys_nd[lev]->const_array(mfi);
+
755  const Array4<Real const>& r0_arr = r_hse.const_array(mfi);
+
756 
+
757  Real H = geom[lev].ProbHi()[2];
+
758  Real Ampl = 0.16;
+
759  Real wavelength = 100.;
+
760  Real kp = 2. * PI / wavelength;
+
761  Real g = CONST_GRAV;
+
762  Real omega = std::sqrt(g * kp);
+
763  Real omega_t = omega * t_new[lev];
764 
-
765  derdat(i,j,k,mf_comp) -= pprime_exact;
-
766  });
-
767  }
-
768  mf_comp += 1;
-
769  }
-
770 #endif
-
771  }
-
772 
-
773  // Fill terrain distortion MF
-
774  if (solverChoice.use_terrain) {
-
775  for (int lev(0); lev <= finest_level; ++lev) {
-
776  MultiFab::Copy(mf_nd[lev],*z_phys_nd[lev],0,2,1,0);
-
777  Real dz = Geom()[lev].CellSizeArray()[2];
-
778  for (MFIter mfi(mf_nd[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi) {
-
779  const Box& bx = mfi.tilebox();
-
780  Array4< Real> mf_arr = mf_nd[lev].array(mfi);
-
781  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
-
782  mf_arr(i,j,k,2) -= k * dz;
+
765  ParallelFor(bx, [=] AMREX_GPU_DEVICE(int i, int j, int k) noexcept
+
766  {
+
767  const Real rhotheta = S_arr(i,j,k,RhoTheta_comp);
+
768  derdat(i, j, k, mf_comp) = getPgivenRTh(rhotheta) - p0_arr(i,j,k);
+
769 
+
770  Real rho_hse = r0_arr(i,j,k);
+
771 
+
772  Real x = (i + 0.5) * dx[0];
+
773  Real z = 0.125 * ( z_nd(i,j,k ) + z_nd(i+1,j,k ) + z_nd(i,j+1,k ) + z_nd(i+1,j+1,k )
+
774  +z_nd(i,j,k+1) + z_nd(i+1,j,k+1) + z_nd(i,j+1,k+1) + z_nd(i+1,j+1,k+1) );
+
775  Real z_base = Ampl * std::sin(kp * x - omega_t);
+
776 
+
777  z -= z_base;
+
778  Real fac = std::cosh( kp * (z - H) ) / std::sinh(kp * H);
+
779  Real pprime_exact = -(Ampl * omega * omega / kp) * fac *
+
780  std::sin(kp * x - omega_t) * r0_arr(i,j,k);
+
781 
+
782  derdat(i,j,k,mf_comp) -= pprime_exact;
783  });
784  }
-
785  }
-
786  }
-
787 
-
788  std::string plotfilename;
-
789  if (which == 1)
-
790  plotfilename = Concatenate(plot_file_1, istep[0], 5);
-
791  else if (which == 2)
-
792  plotfilename = Concatenate(plot_file_2, istep[0], 5);
-
793 
-
794  if (finest_level == 0)
-
795  {
-
796  if (plotfile_type == "amrex") {
-
797  amrex::Print() << "Writing plotfile " << plotfilename << "\n";
-
798  if (solverChoice.use_terrain) {
-
799  WriteMultiLevelPlotfileWithTerrain(plotfilename, finest_level+1,
-
800  GetVecOfConstPtrs(mf),
-
801  GetVecOfConstPtrs(mf_nd),
-
802  varnames,
-
803  t_new[0], istep);
-
804  } else {
-
805  WriteMultiLevelPlotfile(plotfilename, finest_level+1,
-
806  GetVecOfConstPtrs(mf),
-
807  varnames,
-
808  Geom(), t_new[0], istep, refRatio());
-
809  }
-
810  writeJobInfo(plotfilename);
-
811 
-
812 #ifdef ERF_USE_PARTICLES
-
813  if (use_tracer_particles) {
-
814  tracer_particles->Checkpoint(plotfilename, "tracers", true, tracer_particle_varnames);
-
815  }
-
816 #endif
-
817 #ifdef ERF_USE_HDF5
-
818  } else if (plotfile_type == "hdf5" || plotfile_type == "HDF5") {
-
819  amrex::Print() << "Writing plotfile " << plotfilename+"d01.h5" << "\n";
-
820  WriteMultiLevelPlotfileHDF5(plotfilename, finest_level+1,
-
821  GetVecOfConstPtrs(mf),
-
822  varnames,
-
823  Geom(), t_new[0], istep, refRatio());
-
824 #endif
-
825 #ifdef ERF_USE_NETCDF
-
826  } else if (plotfile_type == "netcdf" || plotfile_type == "NetCDF") {
-
827  int lev = 0;
-
828  int l_which = 0;
-
829  writeNCPlotFile(lev, l_which, plotfilename, GetVecOfConstPtrs(mf), varnames, istep, t_new[0]);
-
830 #endif
-
831  } else {
-
832  amrex::Print() << "User specified plot_filetype = " << plotfile_type << std::endl;
-
833  amrex::Abort("Dont know this plot_filetype");
-
834  }
-
835 
-
836  } else { // multilevel
-
837 
-
838  Vector<IntVect> r2(finest_level);
-
839  Vector<Geometry> g2(finest_level+1);
-
840  Vector<MultiFab> mf2(finest_level+1);
-
841 
-
842  mf2[0].define(grids[0], dmap[0], ncomp_mf, 0);
-
843 
-
844  // Copy level 0 as is
-
845  MultiFab::Copy(mf2[0],mf[0],0,0,mf[0].nComp(),0);
-
846 
-
847  // Define a new multi-level array of Geometry's so that we pass the new "domain" at lev > 0
-
848  Array<int,AMREX_SPACEDIM> periodicity =
-
849  {Geom()[0].isPeriodic(0),Geom()[0].isPeriodic(1),Geom()[0].isPeriodic(2)};
-
850  g2[0].define(Geom()[0].Domain(),&(Geom()[0].ProbDomain()),0,periodicity.data());
-
851 
-
852  if (plotfile_type == "amrex") {
-
853  r2[0] = IntVect(1,1,ref_ratio[0][0]);
-
854  for (int lev = 1; lev <= finest_level; ++lev) {
-
855  if (lev > 1) {
-
856  r2[lev-1][0] = 1;
-
857  r2[lev-1][1] = 1;
-
858  r2[lev-1][2] = r2[lev-2][2] * ref_ratio[lev-1][0];
-
859  }
+
785  mf_comp += 1;
+
786  }
+
787 #endif
+
788  }
+
789 
+
790  // Fill terrain distortion MF
+
791  if (solverChoice.use_terrain) {
+
792  for (int lev(0); lev <= finest_level; ++lev) {
+
793  MultiFab::Copy(mf_nd[lev],*z_phys_nd[lev],0,2,1,0);
+
794  Real dz = Geom()[lev].CellSizeArray()[2];
+
795  for (MFIter mfi(mf_nd[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi) {
+
796  const Box& bx = mfi.tilebox();
+
797  Array4< Real> mf_arr = mf_nd[lev].array(mfi);
+
798  ParallelFor(bx, [=] AMREX_GPU_DEVICE (int i, int j, int k) {
+
799  mf_arr(i,j,k,2) -= k * dz;
+
800  });
+
801  }
+
802  }
+
803  }
+
804 
+
805  std::string plotfilename;
+
806  if (which == 1)
+
807  plotfilename = Concatenate(plot_file_1, istep[0], 5);
+
808  else if (which == 2)
+
809  plotfilename = Concatenate(plot_file_2, istep[0], 5);
+
810 
+
811  if (finest_level == 0)
+
812  {
+
813  if (plotfile_type == "amrex") {
+
814  amrex::Print() << "Writing plotfile " << plotfilename << "\n";
+
815  if (solverChoice.use_terrain) {
+
816  WriteMultiLevelPlotfileWithTerrain(plotfilename, finest_level+1,
+
817  GetVecOfConstPtrs(mf),
+
818  GetVecOfConstPtrs(mf_nd),
+
819  varnames,
+
820  t_new[0], istep);
+
821  } else {
+
822  WriteMultiLevelPlotfile(plotfilename, finest_level+1,
+
823  GetVecOfConstPtrs(mf),
+
824  varnames,
+
825  Geom(), t_new[0], istep, refRatio());
+
826  }
+
827  writeJobInfo(plotfilename);
+
828 
+
829 #ifdef ERF_USE_PARTICLES
+
830  if (use_tracer_particles) {
+
831  tracer_particles->Checkpoint(plotfilename, "tracers", true, tracer_particle_varnames);
+
832  }
+
833 #endif
+
834 #ifdef ERF_USE_HDF5
+
835  } else if (plotfile_type == "hdf5" || plotfile_type == "HDF5") {
+
836  amrex::Print() << "Writing plotfile " << plotfilename+"d01.h5" << "\n";
+
837  WriteMultiLevelPlotfileHDF5(plotfilename, finest_level+1,
+
838  GetVecOfConstPtrs(mf),
+
839  varnames,
+
840  Geom(), t_new[0], istep, refRatio());
+
841 #endif
+
842 #ifdef ERF_USE_NETCDF
+
843  } else if (plotfile_type == "netcdf" || plotfile_type == "NetCDF") {
+
844  int lev = 0;
+
845  int l_which = 0;
+
846  writeNCPlotFile(lev, l_which, plotfilename, GetVecOfConstPtrs(mf), varnames, istep, t_new[0]);
+
847 #endif
+
848  } else {
+
849  amrex::Print() << "User specified plot_filetype = " << plotfile_type << std::endl;
+
850  amrex::Abort("Dont know this plot_filetype");
+
851  }
+
852 
+
853  } else { // multilevel
+
854 
+
855  Vector<IntVect> r2(finest_level);
+
856  Vector<Geometry> g2(finest_level+1);
+
857  Vector<MultiFab> mf2(finest_level+1);
+
858 
+
859  mf2[0].define(grids[0], dmap[0], ncomp_mf, 0);
860 
-
861  mf2[lev].define(refine(grids[lev],r2[lev-1]), dmap[lev], ncomp_mf, 0);
-
862 
-
863  // Set the new problem domain
-
864  Box d2(Geom()[lev].Domain());
-
865  d2.refine(r2[lev-1]);
-
866 
-
867  g2[lev].define(d2,&(Geom()[lev].ProbDomain()),0,periodicity.data());
-
868  }
-
869 
-
870  // Do piecewise interpolation of mf into mf2
+
861  // Copy level 0 as is
+
862  MultiFab::Copy(mf2[0],mf[0],0,0,mf[0].nComp(),0);
+
863 
+
864  // Define a new multi-level array of Geometry's so that we pass the new "domain" at lev > 0
+
865  Array<int,AMREX_SPACEDIM> periodicity =
+
866  {Geom()[0].isPeriodic(0),Geom()[0].isPeriodic(1),Geom()[0].isPeriodic(2)};
+
867  g2[0].define(Geom()[0].Domain(),&(Geom()[0].ProbDomain()),0,periodicity.data());
+
868 
+
869  if (plotfile_type == "amrex") {
+
870  r2[0] = IntVect(1,1,ref_ratio[0][0]);
871  for (int lev = 1; lev <= finest_level; ++lev) {
-
872 #ifdef _OPENMP
-
873 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
-
874 #endif
-
875  for (MFIter mfi(mf2[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi) {
-
876  const Box& bx = mfi.tilebox();
-
877  pcinterp_interp(bx,mf2[lev].array(mfi), 0, mf[lev].nComp(), mf[lev].const_array(mfi),0,r2[lev-1]);
-
878  }
-
879  }
-
880 
-
881  // Define an effective ref_ratio which is isotropic to be passed into WriteMultiLevelPlotfile
-
882  Vector<IntVect> rr(finest_level);
-
883  for (int lev = 0; lev < finest_level; ++lev) {
-
884  rr[lev] = IntVect(ref_ratio[lev][0],ref_ratio[lev][1],ref_ratio[lev][0]);
+
872  if (lev > 1) {
+
873  r2[lev-1][0] = 1;
+
874  r2[lev-1][1] = 1;
+
875  r2[lev-1][2] = r2[lev-2][2] * ref_ratio[lev-1][0];
+
876  }
+
877 
+
878  mf2[lev].define(refine(grids[lev],r2[lev-1]), dmap[lev], ncomp_mf, 0);
+
879 
+
880  // Set the new problem domain
+
881  Box d2(Geom()[lev].Domain());
+
882  d2.refine(r2[lev-1]);
+
883 
+
884  g2[lev].define(d2,&(Geom()[lev].ProbDomain()),0,periodicity.data());
885  }
886 
-
887  amrex::Print() << "Writing plotfile " << plotfilename << "\n";
-
888  if (solverChoice.use_terrain) {
-
889  WriteMultiLevelPlotfileWithTerrain(plotfilename, finest_level+1,
-
890  GetVecOfConstPtrs(mf),
-
891  GetVecOfConstPtrs(mf_nd),
-
892  varnames,
-
893  t_new[0], istep);
-
894  } else {
-
895  WriteMultiLevelPlotfile(plotfilename, finest_level+1,
-
896  GetVecOfConstPtrs(mf2), varnames,
-
897  g2, t_new[0], istep, rr);
-
898  }
-
899 
-
900  writeJobInfo(plotfilename);
-
901 
-
902 #ifdef ERF_USE_PARTICLES
-
903  if (use_tracer_particles) {
-
904  tracer_particles->Checkpoint(plotfilename, "tracers", true, tracer_particle_varnames);
-
905  }
-
906 #endif
-
907 #ifdef ERF_USE_NETCDF
-
908  } else if (plotfile_type == "netcdf" || plotfile_type == "NetCDF") {
-
909  for (int lev = 0; lev <= finest_level; ++lev) {
-
910  for (int which_box = 0; which_box < num_boxes_at_level[lev]; which_box++) {
-
911  writeNCPlotFile(lev, which_box, plotfilename, GetVecOfConstPtrs(mf), varnames, istep, t_new[0]);
-
912  }
-
913  }
-
914 #endif
-
915  }
-
916  } // end multi-level
-
917 }
+
887  // Do piecewise interpolation of mf into mf2
+
888  for (int lev = 1; lev <= finest_level; ++lev) {
+
889 #ifdef _OPENMP
+
890 #pragma omp parallel if (amrex::Gpu::notInLaunchRegion())
+
891 #endif
+
892  for (MFIter mfi(mf2[lev], TilingIfNotGPU()); mfi.isValid(); ++mfi) {
+
893  const Box& bx = mfi.tilebox();
+
894  pcinterp_interp(bx,mf2[lev].array(mfi), 0, mf[lev].nComp(), mf[lev].const_array(mfi),0,r2[lev-1]);
+
895  }
+
896  }
+
897 
+
898  // Define an effective ref_ratio which is isotropic to be passed into WriteMultiLevelPlotfile
+
899  Vector<IntVect> rr(finest_level);
+
900  for (int lev = 0; lev < finest_level; ++lev) {
+
901  rr[lev] = IntVect(ref_ratio[lev][0],ref_ratio[lev][1],ref_ratio[lev][0]);
+
902  }
+
903 
+
904  amrex::Print() << "Writing plotfile " << plotfilename << "\n";
+
905  if (solverChoice.use_terrain) {
+
906  WriteMultiLevelPlotfileWithTerrain(plotfilename, finest_level+1,
+
907  GetVecOfConstPtrs(mf),
+
908  GetVecOfConstPtrs(mf_nd),
+
909  varnames,
+
910  t_new[0], istep);
+
911  } else {
+
912  WriteMultiLevelPlotfile(plotfilename, finest_level+1,
+
913  GetVecOfConstPtrs(mf2), varnames,
+
914  g2, t_new[0], istep, rr);
+
915  }
+
916 
+
917  writeJobInfo(plotfilename);
+
918 
+
919 #ifdef ERF_USE_PARTICLES
+
920  if (use_tracer_particles) {
+
921  tracer_particles->Checkpoint(plotfilename, "tracers", true, tracer_particle_varnames);
+
922  }
+
923 #endif
+
924 #ifdef ERF_USE_NETCDF
+
925  } else if (plotfile_type == "netcdf" || plotfile_type == "NetCDF") {
+
926  for (int lev = 0; lev <= finest_level; ++lev) {
+
927  for (int which_box = 0; which_box < num_boxes_at_level[lev]; which_box++) {
+
928  writeNCPlotFile(lev, which_box, plotfilename, GetVecOfConstPtrs(mf), varnames, istep, t_new[0]);
+
929  }
+
930  }
+
931 #endif
+
932  }
+
933  } // end multi-level
+
934 }
PI
constexpr amrex::Real PI
Definition: ERF_Constants.H:6
CONST_GRAV
constexpr amrex::Real CONST_GRAV
Definition: ERF_Constants.H:20
@@ -10760,8 +10795,12 @@

Compute_h_zeta_AtJface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_zeta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:122
Compute_h_eta_AtJface
AMREX_GPU_DEVICE AMREX_FORCE_INLINE amrex::Real Compute_h_eta_AtJface(const int &i, const int &j, const int &k, const amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > &cellSizeInv, const amrex::Array4< const amrex::Real > &z_nd)
Definition: TerrainMetrics.H:150
ERF::PlotFileVarNames
static amrex::Vector< std::string > PlotFileVarNames(amrex::Vector< std::string > plot_var_names)
Definition: Plotfile.cpp:81
-
ERF::WriteMultiLevelPlotfileWithTerrain
void WriteMultiLevelPlotfileWithTerrain(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const
Definition: Plotfile.cpp:920
+
ERF::WriteMultiLevelPlotfileWithTerrain
void WriteMultiLevelPlotfileWithTerrain(const std::string &plotfilename, int nlevels, const amrex::Vector< const amrex::MultiFab * > &mf, const amrex::Vector< const amrex::MultiFab * > &mf_nd, const amrex::Vector< std::string > &varnames, amrex::Real time, const amrex::Vector< int > &level_steps, const std::string &versionName="HyperCLaw-V1.1", const std::string &levelPrefix="Level_", const std::string &mfPrefix="Cell", const amrex::Vector< std::string > &extra_dirs=amrex::Vector< std::string >()) const
Definition: Plotfile.cpp:937
ERF::writeJobInfo
void writeJobInfo(const std::string &dir) const
Definition: writeJobInfo.cpp:7
+
EddyDiff::Theta_v
@ Theta_v
Definition: IndexDefines.H:143
+
EddyDiff::Mom_h
@ Mom_h
Definition: IndexDefines.H:130
+
EddyDiff::Mom_v
@ Mom_v
Definition: IndexDefines.H:142
+
EddyDiff::Theta_h
@ Theta_h
Definition: IndexDefines.H:131
MicVar::omega
@ omega
Definition: Microphysics.H:44
derived::erf_derKE
void erf_derKE(const amrex::Box &bx, amrex::FArrayBox &derfab, int, int, const amrex::FArrayBox &datfab, const amrex::Geometry &, amrex::Real, const int *, const int)
Definition: Derive.cpp:202
derived::erf_derQKE
void erf_derQKE(const amrex::Box &bx, amrex::FArrayBox &derfab, int, int, const amrex::FArrayBox &datfab, const amrex::Geometry &, amrex::Real, const int *, const int)
Definition: Derive.cpp:224
@@ -11488,7 +11527,12 @@

Initial value:
{"pressure", "soundspeed", "temp", "theta", "KE", "QKE", "scalar",
"pres_hse", "dens_hse", "pert_pres", "pert_dens",
-
"dpdx", "dpdy", "pres_hse_x", "pres_hse_y", "z_phys", "detJ" , "mapfac"
+
"dpdx", "dpdy", "pres_hse_x", "pres_hse_y",
+
"z_phys", "detJ" , "mapfac",
+
+
"Kmv","Kmh",
+
+
"Khv","Khh"
diff --git a/classMicrophysics.html b/classMicrophysics.html index cb7b097502..7f40461344 100644 --- a/classMicrophysics.html +++ b/classMicrophysics.html @@ -521,8 +521,8 @@

Microphysics::docloud
bool docloud
Definition: Microphysics.H:123

Microphysics::m_axis
int m_axis
Definition: Microphysics.H:120
Microphysics::doprecip
bool doprecip
Definition: Microphysics.H:123
-
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:278
-
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:307
+
SolverChoice::c_p
amrex::Real c_p
Definition: DataStruct.H:284
+
SolverChoice::ave_plane
int ave_plane
Definition: DataStruct.H:313
diff --git a/functions_d.html b/functions_d.html index 6f66f3af90..d91ed9fbc0 100644 --- a/functions_d.html +++ b/functions_d.html @@ -112,12 +112,12 @@

- d -

  • data : NDArray< DataType >
    • -
  • DataLog() -: ERF -
  • datalog : ERF
    • +
  • DataLog() +: ERF +
  • DataLogName() : ERF
    • diff --git a/functions_e.html b/functions_e.html index a99c1e66d3..6e17e8fe16 100644 --- a/functions_e.html +++ b/functions_e.html @@ -100,6 +100,9 @@

    - e -

    • enter_def_mode() : ncutils::NCGroup
      • +
    • EPS +: moeng_flux +
    • eps : WENO3 , WENO5 diff --git a/functions_func_u.html b/functions_func_u.html index 6f511b891a..7727dd7bce 100644 --- a/functions_func_u.html +++ b/functions_func_u.html @@ -95,11 +95,14 @@

      - u -

        : MOSTAverage
      • update_fluxes() -: ABLMost +: ABLMost
      • update_mac_ptrs() : ABLMost
        • +
      • update_surf_temp() +: ABLMost +
      • update_terrain_arrays() : ERF
        • diff --git a/functions_s.html b/functions_s.html index ac145b76ff..1fe5d4042e 100644 --- a/functions_s.html +++ b/functions_s.html @@ -115,12 +115,12 @@

        - s -

        • samplelinelog : ERF
          • -
        • SampleLineLogName() -: ERF -
        • samplelinelogname : ERF
          • +
        • SampleLineLogName() +: ERF +
        • samplepoint : ERF
          • @@ -393,6 +393,9 @@

          - s -

          • sum_per : ERF
            • +
          • surf_heating_rate +: ABLMost +
          • surf_temp : ABLMost
            • diff --git a/functions_u.html b/functions_u.html index 7e7cccb331..fe9bd1f43d 100644 --- a/functions_u.html +++ b/functions_u.html @@ -110,11 +110,14 @@

            - u -

              : MOSTAverage
            • update_fluxes() -: ABLMost +: ABLMost
            • update_mac_ptrs() : ABLMost
              • +
            • update_surf_temp() +: ABLMost +
            • update_terrain_arrays() : ERF
              • diff --git a/functions_vars_e.html b/functions_vars_e.html index abc2709f36..4069668a24 100644 --- a/functions_vars_e.html +++ b/functions_vars_e.html @@ -91,6 +91,9 @@

              - e -

              • else : ModalAeroWateruptake
                • +
              • EPS +: moeng_flux +
              • eps : WENO3 , WENO5 diff --git a/functions_vars_s.html b/functions_vars_s.html index 3459fe2b42..678a3b9a98 100644 --- a/functions_vars_s.html +++ b/functions_vars_s.html @@ -254,6 +254,9 @@

                - s -

                • sum_per : ERF
                  • +
                • surf_heating_rate +: ABLMost +
                • surf_temp : ABLMost
                  • diff --git a/init__rayleigh__damping_8H.html b/init__rayleigh__damping_8H.html index a08bb11d25..68c2390e85 100644 --- a/init__rayleigh__damping_8H.html +++ b/init__rayleigh__damping_8H.html @@ -157,36 +157,37 @@

                  12 {
                  13  const auto ztop = geom.ProbHi()[2];
                  -
                  14  amrex::Print() << "Rayleigh damping (coef="<<parms.dampcoef<<") between "
                  -
                  15  << ztop-parms.zdamp << " and " << ztop << std::endl;
                  -
                  16 
                  -
                  17  const amrex::Real* prob_lo = geom.ProbLo();
                  -
                  18  const auto dx = geom.CellSize();
                  -
                  19  const int khi = geom.Domain().bigEnd()[2];
                  -
                  20 
                  -
                  21  for (int k = 0; k <= khi; k++)
                  -
                  22  {
                  -
                  23  const amrex::Real z = prob_lo[2] + (k + 0.5) * dx[2];
                  -
                  24  const amrex::Real zfrac = 1 - (ztop - z) / parms.zdamp;
                  -
                  25  if (zfrac >= 0)
                  -
                  26  {
                  -
                  27  const amrex::Real sinefac = std::sin(PIoTwo*zfrac);
                  -
                  28  tau[k] = parms.dampcoef * sinefac * sinefac;
                  -
                  29  ubar[k] = parms.U_0;
                  -
                  30  vbar[k] = parms.V_0;
                  -
                  31  wbar[k] = parms.W_0;
                  -
                  32  thetabar[k] = parms.T_0;
                  -
                  33  }
                  -
                  34  else
                  -
                  35  {
                  -
                  36  tau[k] = 0.0;
                  -
                  37  ubar[k] = 0.0;
                  -
                  38  vbar[k] = 0.0;
                  -
                  39  wbar[k] = 0.0;
                  -
                  40  thetabar[k] = 0.0;
                  -
                  41  }
                  -
                  42  }
                  -
                  43 }
                  +
                  14  amrex::Print() << "Rayleigh damping (coef="<<parms.dampcoef<<" s^-1)"
                  +
                  15  << " between " << ztop-parms.zdamp << " and " << ztop << " m"
                  +
                  16  << std::endl;
                  +
                  17 
                  +
                  18  const amrex::Real* prob_lo = geom.ProbLo();
                  +
                  19  const auto dx = geom.CellSize();
                  +
                  20  const int khi = geom.Domain().bigEnd()[2];
                  +
                  21 
                  +
                  22  for (int k = 0; k <= khi; k++)
                  +
                  23  {
                  +
                  24  const amrex::Real z = prob_lo[2] + (k + 0.5) * dx[2];
                  +
                  25  const amrex::Real zfrac = 1 - (ztop - z) / parms.zdamp;
                  +
                  26  if (zfrac >= 0)
                  +
                  27  {
                  +
                  28  const amrex::Real sinefac = std::sin(PIoTwo*zfrac);
                  +
                  29  tau[k] = parms.dampcoef * sinefac * sinefac;
                  +
                  30  ubar[k] = parms.U_0;
                  +
                  31  vbar[k] = parms.V_0;
                  +
                  32  wbar[k] = parms.W_0;
                  +
                  33  thetabar[k] = parms.T_0;
                  +
                  34  }
                  +
                  35  else
                  +
                  36  {
                  +
                  37  tau[k] = 0.0;
                  +
                  38  ubar[k] = 0.0;
                  +
                  39  vbar[k] = 0.0;
                  +
                  40  wbar[k] = 0.0;
                  +
                  41  thetabar[k] = 0.0;
                  +
                  42  }
                  +
                  43  }
                  +
                  44 }
                  PIoTwo
                  constexpr amrex::Real PIoTwo
                  Definition: ERF_Constants.H:7
                  if
                  if(list_idx_in)
                  Definition: Modal_aero_wateruptake.H:422
                  diff --git a/init__rayleigh__damping_8H_source.html b/init__rayleigh__damping_8H_source.html index 53dd704f4a..70a1e53633 100644 --- a/init__rayleigh__damping_8H_source.html +++ b/init__rayleigh__damping_8H_source.html @@ -99,36 +99,37 @@
                  11  amrex::Geometry const& geom) override
                  12 {
                  13  const auto ztop = geom.ProbHi()[2];
                  -
                  14  amrex::Print() << "Rayleigh damping (coef="<<parms.dampcoef<<") between "
                  -
                  15  << ztop-parms.zdamp << " and " << ztop << std::endl;
                  -
                  16 
                  -
                  17  const amrex::Real* prob_lo = geom.ProbLo();
                  -
                  18  const auto dx = geom.CellSize();
                  -
                  19  const int khi = geom.Domain().bigEnd()[2];
                  -
                  20 
                  -
                  21  for (int k = 0; k <= khi; k++)
                  -
                  22  {
                  -
                  23  const amrex::Real z = prob_lo[2] + (k + 0.5) * dx[2];
                  -
                  24  const amrex::Real zfrac = 1 - (ztop - z) / parms.zdamp;
                  -
                  25  if (zfrac >= 0)
                  -
                  26  {
                  -
                  27  const amrex::Real sinefac = std::sin(PIoTwo*zfrac);
                  -
                  28  tau[k] = parms.dampcoef * sinefac * sinefac;
                  -
                  29  ubar[k] = parms.U_0;
                  -
                  30  vbar[k] = parms.V_0;
                  -
                  31  wbar[k] = parms.W_0;
                  -
                  32  thetabar[k] = parms.T_0;
                  -
                  33  }
                  -
                  34  else
                  -
                  35  {
                  -
                  36  tau[k] = 0.0;
                  -
                  37  ubar[k] = 0.0;
                  -
                  38  vbar[k] = 0.0;
                  -
                  39  wbar[k] = 0.0;
                  -
                  40  thetabar[k] = 0.0;
                  -
                  41  }
                  -
                  42  }
                  -
                  43 }
                  +
                  14  amrex::Print() << "Rayleigh damping (coef="<<parms.dampcoef<<" s^-1)"
                  +
                  15  << " between " << ztop-parms.zdamp << " and " << ztop << " m"
                  +
                  16  << std::endl;
                  +
                  17 
                  +
                  18  const amrex::Real* prob_lo = geom.ProbLo();
                  +
                  19  const auto dx = geom.CellSize();
                  +
                  20  const int khi = geom.Domain().bigEnd()[2];
                  +
                  21 
                  +
                  22  for (int k = 0; k <= khi; k++)
                  +
                  23  {
                  +
                  24  const amrex::Real z = prob_lo[2] + (k + 0.5) * dx[2];
                  +
                  25  const amrex::Real zfrac = 1 - (ztop - z) / parms.zdamp;
                  +
                  26  if (zfrac >= 0)
                  +
                  27  {
                  +
                  28  const amrex::Real sinefac = std::sin(PIoTwo*zfrac);
                  +
                  29  tau[k] = parms.dampcoef * sinefac * sinefac;
                  +
                  30  ubar[k] = parms.U_0;
                  +
                  31  vbar[k] = parms.V_0;
                  +
                  32  wbar[k] = parms.W_0;
                  +
                  33  thetabar[k] = parms.T_0;
                  +
                  34  }
                  +
                  35  else
                  +
                  36  {
                  +
                  37  tau[k] = 0.0;
                  +
                  38  ubar[k] = 0.0;
                  +
                  39  vbar[k] = 0.0;
                  +
                  40  wbar[k] = 0.0;
                  +
                  41  thetabar[k] = 0.0;
                  +
                  42  }
                  +
                  43  }
                  +
                  44 }
                  PIoTwo
                  constexpr amrex::Real PIoTwo
                  Definition: ERF_Constants.H:7
                  if
                  if(list_idx_in)
                  Definition: Modal_aero_wateruptake.H:422
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                  129  * density and pressure, then back down to get the dry density and
                  130  * pressure.
                  131  *
                  -
                  132  * This deviates from that code slightly because we calculate the
                  -
                  133  * correct moist theta, equal to virtual potential temperature, and
                  -
                  134  * also remove the factor (1+qv) for consistency with the the surface
                  -
                  135  * density.
                  -
                  136  */
                  -
                  137  const int maxiter = 10;
                  -
                  138  const int Ninp = size();
                  -
                  139  pm_integ.resize(Ninp);
                  -
                  140  pd_integ.resize(Ninp);
                  -
                  141  rhom_integ.resize(Ninp);
                  -
                  142  rhod_integ.resize(Ninp);
                  -
                  143 
                  -
                  144  // evaluate surface quantities (k=0)
                  -
                  145  amrex::Real thm_surf = theta_ref_inp_sound *
                  -
                  146  (1 + (R_v/R_d-1) * qv_ref_inp_sound); // _moist_ theta == virtual potential temperature
                  -
                  147  pm_integ[0] = press_ref_inp_sound; // _total_ pressure (incl moisture)
                  -
                  148  rhom_integ[0] = 1 / (
                  -
                  149  R_d/p_0 * thm_surf * std::pow(pm_integ[0]/p_0, -iGamma)); // density of _moist_ air
                  -
                  150 
                  -
                  151  amrex::Print() << "ideal sounding init: surface density of moist air = "
                  -
                  152  << rhom_integ[0] << " kg/m^3" << std::endl;
                  -
                  153 
                  -
                  154  // Note:
                  -
                  155  // p_dry = rho_d R_d T
                  -
                  156  // p_tot = rho_m R_d T_v
                  -
                  157  // = rho_d(1 + q_v) R_d T_v
                  -
                  158 
                  -
                  159  // integrate from surface to domain top
                  -
                  160  amrex::Real qvf, dz;
                  -
                  161  for (int k=1; k < size(); ++k)
                  -
                  162  {
                  -
                  163  qvf = 1 + (R_v/R_d-1) * qv_inp_sound[k];
                  -
                  164  dz = z_inp_sound[k] - z_inp_sound[k-1];
                  -
                  165  rhom_integ[k] = rhom_integ[k-1]; // guess
                  -
                  166  for (int it=0; it < maxiter; ++it)
                  -
                  167  {
                  -
                  168  pm_integ[k] = pm_integ[k-1]
                  -
                  169  - 0.5*dz*(rhom_integ[k] + rhom_integ[k-1])*CONST_GRAV;
                  -
                  170  AMREX_ALWAYS_ASSERT(pm_integ[k] > 0);
                  -
                  171  rhom_integ[k] = 1 / (
                  -
                  172  R_d/p_0 * theta_inp_sound[k]*qvf * std::pow(pm_integ[k]/p_0, -iGamma));
                  -
                  173  }
                  -
                  174  }
                  -
                  175 
                  -
                  176  // now, integrate from the top of the sounding (where it's dry) back
                  -
                  177  // down to get the dry air column properties
                  -
                  178  pd_integ[Ninp-1] = pm_integ[Ninp-1];
                  -
                  179  rhod_integ[Ninp-1] = 1 / (
                  -
                  180  R_d/p_0 * theta_inp_sound[Ninp-1] * std::pow(pd_integ[Ninp-1]/p_0, -iGamma));
                  -
                  181  amrex::Print() << "z p_d rho_d theta U V" << std::endl;
                  -
                  182  amrex::Print() << z_inp_sound[Ninp-1]
                  -
                  183  << " " << pd_integ[Ninp-1]
                  -
                  184  << " " << rhod_integ[Ninp-1]
                  -
                  185  << " " << theta_inp_sound[Ninp-1]
                  -
                  186  << " " << U_inp_sound[Ninp-1]
                  -
                  187  << " " << V_inp_sound[Ninp-1]
                  -
                  188  << std::endl;
                  -
                  189  for (int k=Ninp-2; k >= 0; --k)
                  -
                  190  {
                  -
                  191  dz = z_inp_sound[k+1] - z_inp_sound[k];
                  -
                  192  rhod_integ[k] = rhod_integ[k+1]; // guess
                  -
                  193  for (int it=0; it < maxiter; ++it)
                  -
                  194  {
                  -
                  195  pd_integ[k] = pd_integ[k+1]
                  -
                  196  + 0.5*dz*(rhod_integ[k] + rhod_integ[k+1])*CONST_GRAV;
                  -
                  197  AMREX_ALWAYS_ASSERT(pd_integ[k] > 0);
                  -
                  198  rhod_integ[k] = 1 / (
                  -
                  199  R_d/p_0 * theta_inp_sound[k] * std::pow(pd_integ[k]/p_0, -iGamma));
                  -
                  200  }
                  -
                  201  amrex::Print() << z_inp_sound[k]
                  -
                  202  << " " << pd_integ[k]
                  -
                  203  << " " << rhod_integ[k]
                  -
                  204  << " " << theta_inp_sound[k]
                  -
                  205  << " " << U_inp_sound[k]
                  -
                  206  << " " << V_inp_sound[k]
                  -
                  207  << std::endl;
                  -
                  208  }
                  -
                  209  // Note: at this point, the surface pressure, density of the dry air
                  -
                  210  // column is stored in pd_integ[0], rhod_integ[0]
                  -
                  211 
                  -
                  212  // update
                  -
                  213  host_to_device();
                  -
                  214  }
                  +
                  132  * This deviates from that code slightly because we calculate a moist
                  +
                  133  * theta that is equal to virtual potential temperature, and also
                  +
                  134  * remove the factor of (1+qv) for consistency with the surface density.
                  +
                  135  */
                  +
                  136  const int maxiter = 10;
                  +
                  137  const int Ninp = size();
                  +
                  138  pm_integ.resize(Ninp);
                  +
                  139  pd_integ.resize(Ninp);
                  +
                  140  rhom_integ.resize(Ninp);
                  +
                  141  rhod_integ.resize(Ninp);
                  +
                  142 
                  +
                  143  // evaluate surface quantities (k=0)
                  +
                  144  amrex::Real thm_surf = theta_ref_inp_sound *
                  +
                  145  (1 + (R_v/R_d-1) * qv_ref_inp_sound); // _moist_ theta == virtual potential temperature
                  +
                  146  pm_integ[0] = press_ref_inp_sound; // _total_ pressure (incl moisture)
                  +
                  147  rhom_integ[0] = 1 / (
                  +
                  148  R_d/p_0 * thm_surf * std::pow(pm_integ[0]/p_0, -iGamma)); // density of _moist_ air
                  +
                  149 
                  +
                  150  amrex::Print() << "ideal sounding init: surface density of moist air = "
                  +
                  151  << rhom_integ[0] << " kg/m^3" << std::endl;
                  +
                  152 
                  +
                  153  // Note:
                  +
                  154  // p_dry = rho_d R_d T
                  +
                  155  // p_tot = rho_m R_d T_v
                  +
                  156  // = rho_d(1 + q_v) R_d T_v
                  +
                  157 
                  +
                  158  // integrate from surface to domain top
                  +
                  159  amrex::Real qvf, dz;
                  +
                  160 #if 0
                  +
                  161  // In this absence of moisture, this moist profile will match the
                  +
                  162  // following dry profile
                  +
                  163  amrex::Print() << "z p_m rho_m theta U V" << std::endl;
                  +
                  164  amrex::Print() << z_inp_sound[0]
                  +
                  165  << " " << pm_integ[0]
                  +
                  166  << " " << rhom_integ[0]
                  +
                  167  << " " << theta_inp_sound[0]
                  +
                  168  << " " << U_inp_sound[0]
                  +
                  169  << " " << V_inp_sound[0]
                  +
                  170  << std::endl;
                  +
                  171 #endif
                  +
                  172  for (int k=1; k < size(); ++k)
                  +
                  173  {
                  +
                  174  qvf = 1 + (R_v/R_d-1) * qv_inp_sound[k];
                  +
                  175  dz = z_inp_sound[k] - z_inp_sound[k-1];
                  +
                  176  rhom_integ[k] = rhom_integ[k-1]; // guess
                  +
                  177  for (int it=0; it < maxiter; ++it)
                  +
                  178  {
                  +
                  179  pm_integ[k] = pm_integ[k-1]
                  +
                  180  - 0.5*dz*(rhom_integ[k] + rhom_integ[k-1])*CONST_GRAV;
                  +
                  181  AMREX_ALWAYS_ASSERT(pm_integ[k] > 0);
                  +
                  182  rhom_integ[k] = 1 / (
                  +
                  183  R_d/p_0 * theta_inp_sound[k]*qvf * std::pow(pm_integ[k]/p_0, -iGamma));
                  +
                  184  }
                  +
                  185 #if 0
                  +
                  186  amrex::Print() << z_inp_sound[k]
                  +
                  187  << " " << pm_integ[k]
                  +
                  188  << " " << rhom_integ[k]
                  +
                  189  << " " << theta_inp_sound[k]
                  +
                  190  << " " << U_inp_sound[k]
                  +
                  191  << " " << V_inp_sound[k]
                  +
                  192  << std::endl;
                  +
                  193 #endif
                  +
                  194  }
                  +
                  195 
                  +
                  196  // now, integrate from the top of the sounding (where it's assumed dry) back
                  +
                  197  // down to get the dry air column properties
                  +
                  198  pd_integ[Ninp-1] = pm_integ[Ninp-1];
                  +
                  199  rhod_integ[Ninp-1] = 1 / (
                  +
                  200  R_d/p_0 * theta_inp_sound[Ninp-1] * std::pow(pd_integ[Ninp-1]/p_0, -iGamma));
                  +
                  201  amrex::Print() << "z p_d rho_d theta U V" << std::endl;
                  +
                  202  amrex::Print() << z_inp_sound[Ninp-1]
                  +
                  203  << " " << pd_integ[Ninp-1]
                  +
                  204  << " " << rhod_integ[Ninp-1]
                  +
                  205  << " " << theta_inp_sound[Ninp-1]
                  +
                  206  << " " << U_inp_sound[Ninp-1]
                  +
                  207  << " " << V_inp_sound[Ninp-1]
                  +
                  208  << std::endl;
                  +
                  209  for (int k=Ninp-2; k >= 0; --k)
                  +
                  210  {
                  +
                  211  dz = z_inp_sound[k+1] - z_inp_sound[k];
                  +
                  212  rhod_integ[k] = rhod_integ[k+1]; // guess
                  +
                  213  for (int it=0; it < maxiter; ++it)
                  +
                  214  {
                  +
                  215  pd_integ[k] = pd_integ[k+1]
                  +
                  216  + 0.5*dz*(rhod_integ[k] + rhod_integ[k+1])*CONST_GRAV;
                  +
                  217  AMREX_ALWAYS_ASSERT(pd_integ[k] > 0);
                  +
                  218  rhod_integ[k] = 1 / (
                  +
                  219  R_d/p_0 * theta_inp_sound[k] * std::pow(pd_integ[k]/p_0, -iGamma));
                  +
                  220  }
                  +
                  221  amrex::Print() << z_inp_sound[k]
                  +
                  222  << " " << pd_integ[k]
                  +
                  223  << " " << rhod_integ[k]
                  +
                  224  << " " << theta_inp_sound[k]
                  +
                  225  << " " << U_inp_sound[k]
                  +
                  226  << " " << V_inp_sound[k]
                  +
                  227  << std::endl;
                  +
                  228  }
                  +
                  229  // Note: at this point, the surface pressure, density of the dry air
                  +
                  230  // column is stored in pd_integ[0], rhod_integ[0]
                  +
                  231 
                  +
                  232  // update
                  +
                  233  host_to_device();
                  +
                  234  }
                  R_v
                  constexpr amrex::Real R_v
                  Definition: ERF_Constants.H:11
                  p_0
                  constexpr amrex::Real p_0
                  Definition: ERF_Constants.H:17
                  iGamma
                  constexpr amrex::Real iGamma
                  Definition: ERF_Constants.H:25
                  CONST_GRAV
                  constexpr amrex::Real CONST_GRAV
                  Definition: ERF_Constants.H:20
                  R_d
                  constexpr amrex::Real R_d
                  Definition: ERF_Constants.H:10
                  -
                  InputSoundingData::press_ref_inp_sound
                  amrex::Real press_ref_inp_sound
                  Definition: InputSoundingData.H:265
                  -
                  InputSoundingData::z_inp_sound
                  amrex::Vector< amrex::Real > z_inp_sound
                  Definition: InputSoundingData.H:266
                  -
                  InputSoundingData::theta_ref_inp_sound
                  amrex::Real theta_ref_inp_sound
                  Definition: InputSoundingData.H:265
                  -
                  InputSoundingData::pm_integ
                  amrex::Vector< amrex::Real > pm_integ
                  Definition: InputSoundingData.H:269
                  -
                  InputSoundingData::rhom_integ
                  amrex::Vector< amrex::Real > rhom_integ
                  Definition: InputSoundingData.H:269
                  -
                  InputSoundingData::rhod_integ
                  amrex::Vector< amrex::Real > rhod_integ
                  Definition: InputSoundingData.H:271
                  -
                  InputSoundingData::qv_inp_sound
                  amrex::Vector< amrex::Real > qv_inp_sound
                  Definition: InputSoundingData.H:266
                  -
                  InputSoundingData::U_inp_sound
                  amrex::Vector< amrex::Real > U_inp_sound
                  Definition: InputSoundingData.H:266
                  -
                  InputSoundingData::V_inp_sound
                  amrex::Vector< amrex::Real > V_inp_sound
                  Definition: InputSoundingData.H:266
                  -
                  InputSoundingData::qv_ref_inp_sound
                  amrex::Real qv_ref_inp_sound
                  Definition: InputSoundingData.H:265
                  -
                  InputSoundingData::host_to_device
                  void host_to_device()
                  Definition: InputSoundingData.H:216
                  -
                  InputSoundingData::pd_integ
                  amrex::Vector< amrex::Real > pd_integ
                  Definition: InputSoundingData.H:271
                  -
                  InputSoundingData::theta_inp_sound
                  amrex::Vector< amrex::Real > theta_inp_sound
                  Definition: InputSoundingData.H:266
                  -
                  InputSoundingData::size
                  int size() const
                  Definition: InputSoundingData.H:254
                  +
                  InputSoundingData::press_ref_inp_sound
                  amrex::Real press_ref_inp_sound
                  Definition: InputSoundingData.H:285
                  +
                  InputSoundingData::z_inp_sound
                  amrex::Vector< amrex::Real > z_inp_sound
                  Definition: InputSoundingData.H:286
                  +
                  InputSoundingData::theta_ref_inp_sound
                  amrex::Real theta_ref_inp_sound
                  Definition: InputSoundingData.H:285
                  +
                  InputSoundingData::pm_integ
                  amrex::Vector< amrex::Real > pm_integ
                  Definition: InputSoundingData.H:289
                  +
                  InputSoundingData::rhom_integ
                  amrex::Vector< amrex::Real > rhom_integ
                  Definition: InputSoundingData.H:289
                  +
                  InputSoundingData::rhod_integ
                  amrex::Vector< amrex::Real > rhod_integ
                  Definition: InputSoundingData.H:291
                  +
                  InputSoundingData::qv_inp_sound
                  amrex::Vector< amrex::Real > qv_inp_sound
                  Definition: InputSoundingData.H:286
                  +
                  InputSoundingData::U_inp_sound
                  amrex::Vector< amrex::Real > U_inp_sound
                  Definition: InputSoundingData.H:286
                  +
                  InputSoundingData::V_inp_sound
                  amrex::Vector< amrex::Real > V_inp_sound
                  Definition: InputSoundingData.H:286
                  +
                  InputSoundingData::qv_ref_inp_sound
                  amrex::Real qv_ref_inp_sound
                  Definition: InputSoundingData.H:285
                  +
                  InputSoundingData::host_to_device
                  void host_to_device()
                  Definition: InputSoundingData.H:236
                  +
                  InputSoundingData::pd_integ
                  amrex::Vector< amrex::Real > pd_integ
                  Definition: InputSoundingData.H:291
                  +
                  InputSoundingData::theta_inp_sound
                  amrex::Vector< amrex::Real > theta_inp_sound
                  Definition: InputSoundingData.H:286
                  +
                  InputSoundingData::size
                  int size() const
                  Definition: InputSoundingData.H:274
                  Here is the call graph for this function:
                  @@ -354,49 +374,49 @@

                  -
                  217  {
                  -
                  218  z_inp_sound_d.resize(size());
                  -
                  219  theta_inp_sound_d.resize(size());
                  -
                  220  qv_inp_sound_d.resize(size());
                  -
                  221  U_inp_sound_d.resize(size());
                  -
                  222  V_inp_sound_d.resize(size());
                  -
                  223 
                  -
                  224  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  225  z_inp_sound.begin(), z_inp_sound.end(),
                  -
                  226  z_inp_sound_d.begin());
                  -
                  227  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  228  theta_inp_sound.begin(), theta_inp_sound.end(),
                  -
                  229  theta_inp_sound_d.begin());
                  -
                  230  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  231  qv_inp_sound.begin(), qv_inp_sound.end(),
                  -
                  232  qv_inp_sound_d.begin());
                  -
                  233  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  234  U_inp_sound.begin(), U_inp_sound.end(),
                  -
                  235  U_inp_sound_d.begin());
                  -
                  236  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  237  V_inp_sound.begin(), V_inp_sound.end(),
                  -
                  238  V_inp_sound_d.begin());
                  -
                  239 
                  -
                  240  if (rhod_integ.size() > 0)
                  -
                  241  {
                  -
                  242  //amrex::Print() << "Copying rho_d, p_d to device" << std::endl;
                  -
                  243  rho_inp_sound_d.resize(size()+2);
                  -
                  244  p_inp_sound_d.resize(size()+2);
                  -
                  245  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  246  rhod_integ.begin(), rhod_integ.end(),
                  -
                  247  rho_inp_sound_d.begin());
                  -
                  248  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  -
                  249  pd_integ.begin(), pd_integ.end(),
                  -
                  250  p_inp_sound_d.begin());
                  -
                  251  }
                  -
                  252  }
                  -
                  InputSoundingData::p_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > p_inp_sound_d
                  Definition: InputSoundingData.H:273
                  -
                  InputSoundingData::V_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > V_inp_sound_d
                  Definition: InputSoundingData.H:267
                  -
                  InputSoundingData::rho_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > rho_inp_sound_d
                  Definition: InputSoundingData.H:273
                  -
                  InputSoundingData::U_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > U_inp_sound_d
                  Definition: InputSoundingData.H:267
                  -
                  InputSoundingData::z_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > z_inp_sound_d
                  Definition: InputSoundingData.H:267
                  -
                  InputSoundingData::qv_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > qv_inp_sound_d
                  Definition: InputSoundingData.H:267
                  -
                  InputSoundingData::theta_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > theta_inp_sound_d
                  Definition: InputSoundingData.H:267
                  +
                  237  {
                  +
                  238  z_inp_sound_d.resize(size());
                  +
                  239  theta_inp_sound_d.resize(size());
                  +
                  240  qv_inp_sound_d.resize(size());
                  +
                  241  U_inp_sound_d.resize(size());
                  +
                  242  V_inp_sound_d.resize(size());
                  +
                  243 
                  +
                  244  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  245  z_inp_sound.begin(), z_inp_sound.end(),
                  +
                  246  z_inp_sound_d.begin());
                  +
                  247  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  248  theta_inp_sound.begin(), theta_inp_sound.end(),
                  +
                  249  theta_inp_sound_d.begin());
                  +
                  250  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  251  qv_inp_sound.begin(), qv_inp_sound.end(),
                  +
                  252  qv_inp_sound_d.begin());
                  +
                  253  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  254  U_inp_sound.begin(), U_inp_sound.end(),
                  +
                  255  U_inp_sound_d.begin());
                  +
                  256  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  257  V_inp_sound.begin(), V_inp_sound.end(),
                  +
                  258  V_inp_sound_d.begin());
                  +
                  259 
                  +
                  260  if (rhod_integ.size() > 0)
                  +
                  261  {
                  +
                  262  //amrex::Print() << "Copying rho_d, p_d to device" << std::endl;
                  +
                  263  rho_inp_sound_d.resize(size()+2);
                  +
                  264  p_inp_sound_d.resize(size()+2);
                  +
                  265  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  266  rhod_integ.begin(), rhod_integ.end(),
                  +
                  267  rho_inp_sound_d.begin());
                  +
                  268  amrex::Gpu::copy(amrex::Gpu::hostToDevice,
                  +
                  269  pd_integ.begin(), pd_integ.end(),
                  +
                  270  p_inp_sound_d.begin());
                  +
                  271  }
                  +
                  272  }
                  +
                  InputSoundingData::p_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > p_inp_sound_d
                  Definition: InputSoundingData.H:293
                  +
                  InputSoundingData::V_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > V_inp_sound_d
                  Definition: InputSoundingData.H:287
                  +
                  InputSoundingData::rho_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > rho_inp_sound_d
                  Definition: InputSoundingData.H:293
                  +
                  InputSoundingData::U_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > U_inp_sound_d
                  Definition: InputSoundingData.H:287
                  +
                  InputSoundingData::z_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > z_inp_sound_d
                  Definition: InputSoundingData.H:287
                  +
                  InputSoundingData::qv_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > qv_inp_sound_d
                  Definition: InputSoundingData.H:287
                  +
                  InputSoundingData::theta_inp_sound_d
                  amrex::Gpu::DeviceVector< amrex::Real > theta_inp_sound_d
                  Definition: InputSoundingData.H:287

                  Referenced by calc_rho_p(), and read_from_file().

                  @@ -593,13 +613,13 @@

                  -
                  255  {
                  -
                  256  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == theta_inp_sound.size());
                  -
                  257  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == qv_inp_sound.size());
                  -
                  258  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == U_inp_sound.size());
                  -
                  259  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == V_inp_sound.size());
                  -
                  260  return z_inp_sound.size();
                  -
                  261  }
                  +
                  275  {
                  +
                  276  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == theta_inp_sound.size());
                  +
                  277  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == qv_inp_sound.size());
                  +
                  278  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == U_inp_sound.size());
                  +
                  279  AMREX_ALWAYS_ASSERT(z_inp_sound.size() == V_inp_sound.size());
                  +
                  280  return z_inp_sound.size();
                  +
                  281  }

                  Referenced by calc_rho_p(), host_to_device(), init_bx_scalars_from_input_sounding(), init_bx_scalars_from_input_sounding_hse(), and init_bx_velocities_from_input_sounding().

                  diff --git a/structSolverChoice.html b/structSolverChoice.html index 1199c9acc9..282830bc11 100644 --- a/structSolverChoice.html +++ b/structSolverChoice.html @@ -221,47 +221,47 @@

                  -
                  208  {
                  -
                  209  amrex::ParmParse pp(pp_prefix);
                  -
                  210 
                  -
                  211  // Read the rotational time period (in seconds)
                  -
                  212  amrex::Real rot_time_period = 86400.0;
                  -
                  213  pp.query("rotational_time_period", rot_time_period);
                  -
                  214 
                  -
                  215  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
                  -
                  216  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
                  -
                  217 
                  -
                  218  amrex::Real latitude = 90.0;
                  -
                  219  pp.query("latitude", latitude);
                  +
                  214  {
                  +
                  215  amrex::ParmParse pp(pp_prefix);
                  +
                  216 
                  +
                  217  // Read the rotational time period (in seconds)
                  +
                  218  amrex::Real rot_time_period = 86400.0;
                  +
                  219  pp.query("rotational_time_period", rot_time_period);
                  220 
                  -
                  221  // Convert to radians
                  -
                  222  latitude *= (PI/180.);
                  -
                  223  sinphi = std::sin(latitude);
                  -
                  224  cosphi = std::cos(latitude);
                  -
                  225 
                  -
                  226  if (abl_driver_type == ABLDriverType::GeostrophicWind)
                  -
                  227  {
                  -
                  228  // Read in the geostrophic wind -- we only use this to construct
                  -
                  229  // the forcing term so no need to keep it
                  -
                  230  amrex::Vector<amrex::Real> abl_geo_wind(3);
                  -
                  231  pp.queryarr("abl_geo_wind",abl_geo_wind);
                  -
                  232 
                  -
                  233  abl_geo_forcing = {
                  -
                  234  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
                  -
                  235  coriolis_factor * abl_geo_wind[0]*sinphi,
                  -
                  236  -coriolis_factor * abl_geo_wind[0]*cosphi
                  -
                  237  };
                  -
                  238  }
                  -
                  239  }
                  +
                  221  coriolis_factor = 2.0 * 2.0 * PI / rot_time_period;
                  +
                  222  amrex::Print() << "Coriolis factor = " << coriolis_factor << std::endl;
                  +
                  223 
                  +
                  224  amrex::Real latitude = 90.0;
                  +
                  225  pp.query("latitude", latitude);
                  +
                  226 
                  +
                  227  // Convert to radians
                  +
                  228  latitude *= (PI/180.);
                  +
                  229  sinphi = std::sin(latitude);
                  +
                  230  cosphi = std::cos(latitude);
                  +
                  231 
                  +
                  232  if (abl_driver_type == ABLDriverType::GeostrophicWind)
                  +
                  233  {
                  +
                  234  // Read in the geostrophic wind -- we only use this to construct
                  +
                  235  // the forcing term so no need to keep it
                  +
                  236  amrex::Vector<amrex::Real> abl_geo_wind(3);
                  +
                  237  pp.queryarr("abl_geo_wind",abl_geo_wind);
                  +
                  238 
                  +
                  239  abl_geo_forcing = {
                  +
                  240  -coriolis_factor * (abl_geo_wind[1]*sinphi - abl_geo_wind[2]*cosphi),
                  +
                  241  coriolis_factor * abl_geo_wind[0]*sinphi,
                  +
                  242  -coriolis_factor * abl_geo_wind[0]*cosphi
                  +
                  243  };
                  +
                  244  }
                  +
                  245  }
                  PI
                  constexpr amrex::Real PI
                  Definition: ERF_Constants.H:6
                  pp
                  AMREX_GPU_HOST_DEVICE AMREX_FORCE_INLINE amrex::Real pp(amrex::Real y)
                  Definition: Microphysics_Utils.H:187
                  -
                  SolverChoice::coriolis_factor
                  amrex::Real coriolis_factor
                  Definition: DataStruct.H:295
                  -
                  SolverChoice::cosphi
                  amrex::Real cosphi
                  Definition: DataStruct.H:296
                  -
                  SolverChoice::pp_prefix
                  std::string pp_prefix
                  Definition: DataStruct.H:247
                  -
                  SolverChoice::abl_geo_forcing
                  amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
                  Definition: DataStruct.H:305
                  -
                  SolverChoice::sinphi
                  amrex::Real sinphi
                  Definition: DataStruct.H:297
                  -
                  SolverChoice::abl_driver_type
                  ABLDriverType abl_driver_type
                  Definition: DataStruct.H:303
                  +
                  SolverChoice::coriolis_factor
                  amrex::Real coriolis_factor
                  Definition: DataStruct.H:301
                  +
                  SolverChoice::cosphi
                  amrex::Real cosphi
                  Definition: DataStruct.H:302
                  +
                  SolverChoice::pp_prefix
                  std::string pp_prefix
                  Definition: DataStruct.H:253
                  +
                  SolverChoice::abl_geo_forcing
                  amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_geo_forcing
                  Definition: DataStruct.H:311
                  +
                  SolverChoice::sinphi
                  amrex::Real sinphi
                  Definition: DataStruct.H:303
                  +
                  SolverChoice::abl_driver_type
                  ABLDriverType abl_driver_type
                  Definition: DataStruct.H:309

                  Referenced by init_params().

                  @@ -307,56 +307,56 @@

                  -
                  171  {
                  -
                  172  amrex::Print() << "SOLVER CHOICE: " << std::endl;
                  -
                  173  amrex::Print() << "no_substepping : " << no_substepping << std::endl;
                  -
                  174  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
                  -
                  175  amrex::Print() << "incompressible : " << incompressible << std::endl;
                  -
                  176  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
                  -
                  177  amrex::Print() << "use_rayleigh_damping : " << use_rayleigh_damping << std::endl;
                  -
                  178  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
                  -
                  179 
                  -
                  180  if (abl_driver_type == ABLDriverType::None) {
                  -
                  181  amrex::Print() << "ABL Driver Type: " << "None" << std::endl;
                  -
                  182  amrex::Print() << "No ABL driver selected " << std::endl;
                  -
                  183  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
                  -
                  184  amrex::Print() << "ABL Driver Type: " << "PressureGradient" << std::endl;
                  -
                  185  amrex::Print() << "Driving abl_pressure_grad: (";
                  -
                  186  for (int i = 0; i < AMREX_SPACEDIM; ++i)
                  -
                  187  amrex::Print() << abl_pressure_grad[i] << " ";
                  -
                  188  amrex::Print() << ")" << std::endl;
                  -
                  189  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                  -
                  190  amrex::Print() << "ABL Driver Type: " << "GeostrophicWind" << std::endl;
                  -
                  191  amrex::Print() << "Driving abl_geo_forcing: (";
                  +
                  177  {
                  +
                  178  amrex::Print() << "SOLVER CHOICE: " << std::endl;
                  +
                  179  amrex::Print() << "no_substepping : " << no_substepping << std::endl;
                  +
                  180  amrex::Print() << "force_stage1_single_substep : " << force_stage1_single_substep << std::endl;
                  +
                  181  amrex::Print() << "incompressible : " << incompressible << std::endl;
                  +
                  182  amrex::Print() << "use_coriolis : " << use_coriolis << std::endl;
                  +
                  183  amrex::Print() << "use_rayleigh_damping : " << use_rayleigh_damping << std::endl;
                  +
                  184  amrex::Print() << "use_gravity : " << use_gravity << std::endl;
                  +
                  185 
                  +
                  186  if (abl_driver_type == ABLDriverType::None) {
                  +
                  187  amrex::Print() << "ABL Driver Type: " << "None" << std::endl;
                  +
                  188  amrex::Print() << "No ABL driver selected " << std::endl;
                  +
                  189  } else if (abl_driver_type == ABLDriverType::PressureGradient) {
                  +
                  190  amrex::Print() << "ABL Driver Type: " << "PressureGradient" << std::endl;
                  +
                  191  amrex::Print() << "Driving abl_pressure_grad: (";
                  192  for (int i = 0; i < AMREX_SPACEDIM; ++i)
                  -
                  193  amrex::Print() << abl_geo_forcing[i] << " ";
                  +
                  193  amrex::Print() << abl_pressure_grad[i] << " ";
                  194  amrex::Print() << ")" << std::endl;
                  -
                  195  }
                  -
                  196 
                  -
                  197  advChoice.display();
                  -
                  198  diffChoice.display();
                  -
                  199  spongeChoice.display();
                  -
                  200 
                  -
                  201  int max_level = turbChoice.size()-1;
                  -
                  202  for (int lev = 0; lev <= max_level; lev++) {
                  -
                  203  turbChoice[lev].display(lev);
                  -
                  204  }
                  -
                  205  }
                  +
                  195  } else if (abl_driver_type == ABLDriverType::GeostrophicWind) {
                  +
                  196  amrex::Print() << "ABL Driver Type: " << "GeostrophicWind" << std::endl;
                  +
                  197  amrex::Print() << "Driving abl_geo_forcing: (";
                  +
                  198  for (int i = 0; i < AMREX_SPACEDIM; ++i)
                  +
                  199  amrex::Print() << abl_geo_forcing[i] << " ";
                  +
                  200  amrex::Print() << ")" << std::endl;
                  +
                  201  }
                  +
                  202 
                  +
                  203  advChoice.display();
                  +
                  204  diffChoice.display();
                  +
                  205  spongeChoice.display();
                  +
                  206 
                  +
                  207  int max_level = turbChoice.size()-1;
                  +
                  208  for (int lev = 0; lev <= max_level; lev++) {
                  +
                  209  turbChoice[lev].display(lev);
                  +
                  210  }
                  +
                  211  }
                  AdvChoice::display
                  void display()
                  Definition: AdvStruct.H:139
                  DiffChoice::display
                  void display()
                  Definition: DiffStruct.H:56
                  -
                  SolverChoice::use_rayleigh_damping
                  bool use_rayleigh_damping
                  Definition: DataStruct.H:266
                  -
                  SolverChoice::no_substepping
                  int no_substepping
                  Definition: DataStruct.H:249
                  -
                  SolverChoice::diffChoice
                  DiffChoice diffChoice
                  Definition: DataStruct.H:242
                  -
                  SolverChoice::use_gravity
                  bool use_gravity
                  Definition: DataStruct.H:264
                  -
                  SolverChoice::force_stage1_single_substep
                  int force_stage1_single_substep
                  Definition: DataStruct.H:250
                  -
                  SolverChoice::abl_pressure_grad
                  amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
                  Definition: DataStruct.H:304
                  -
                  SolverChoice::use_coriolis
                  bool use_coriolis
                  Definition: DataStruct.H:265
                  -
                  SolverChoice::turbChoice
                  amrex::Vector< TurbChoice > turbChoice
                  Definition: DataStruct.H:244
                  -
                  SolverChoice::advChoice
                  AdvChoice advChoice
                  Definition: DataStruct.H:241
                  -
                  SolverChoice::spongeChoice
                  SpongeChoice spongeChoice
                  Definition: DataStruct.H:243
                  -
                  SolverChoice::incompressible
                  int incompressible
                  Definition: DataStruct.H:251
                  +
                  SolverChoice::use_rayleigh_damping
                  bool use_rayleigh_damping
                  Definition: DataStruct.H:272
                  +
                  SolverChoice::no_substepping
                  int no_substepping
                  Definition: DataStruct.H:255
                  +
                  SolverChoice::diffChoice
                  DiffChoice diffChoice
                  Definition: DataStruct.H:248
                  +
                  SolverChoice::use_gravity
                  bool use_gravity
                  Definition: DataStruct.H:270
                  +
                  SolverChoice::force_stage1_single_substep
                  int force_stage1_single_substep
                  Definition: DataStruct.H:256
                  +
                  SolverChoice::abl_pressure_grad
                  amrex::GpuArray< amrex::Real, AMREX_SPACEDIM > abl_pressure_grad
                  Definition: DataStruct.H:310
                  +
                  SolverChoice::use_coriolis
                  bool use_coriolis
                  Definition: DataStruct.H:271
                  +
                  SolverChoice::turbChoice
                  amrex::Vector< TurbChoice > turbChoice
                  Definition: DataStruct.H:250
                  +
                  SolverChoice::advChoice
                  AdvChoice advChoice
                  Definition: DataStruct.H:247
                  +
                  SolverChoice::spongeChoice
                  SpongeChoice spongeChoice
                  Definition: DataStruct.H:249
                  +
                  SolverChoice::incompressible
                  int incompressible
                  Definition: DataStruct.H:257
                  SpongeChoice::display
                  void display()
                  Definition: SpongeStruct.H:43
                  Here is the call graph for this function:
                  @@ -489,48 +489,54 @@

                  124  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_pressure_grad[i] = abl_pressure_grad_in[i];

                  125 
                  126  amrex::Vector<amrex::Real> abl_geo_forcing_in = {0.0, 0.0, 0.0};
                  -
                  127  pp.queryarr("abl_geo_forcing",abl_geo_forcing_in);
                  -
                  128  for(int i = 0; i < AMREX_SPACEDIM; ++i) abl_geo_forcing[i] = abl_geo_forcing_in[i];
                  -
                  129 
                  -
                  130  if (use_coriolis)
                  -
                  131  {
                  -
                  132  build_coriolis_forcings();
                  -
                  133  }
                  -
                  134 
                  -
                  135  pp.query("Ave_Plane", ave_plane);
                  -
                  136 
                  -
                  137 #ifdef ERF_USE_MOISTURE
                  -
                  138  pp.query("mp_clouds", do_cloud);
                  -
                  139  pp.query("mp_precip", do_precip);
                  -
                  140 #endif
                  -
                  141 
                  -
                  142  // Use numerical diffusion?
                  -
                  143  pp.query("use_NumDiff",use_NumDiff);
                  -
                  144  if(use_NumDiff) {
                  -
                  145  pp.query("NumDiffCoeff",NumDiffCoeff);
                  -
                  146  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
                  -
                  147  "Numerical diffusion coefficient must be between 0 & 1.");
                  -
                  148  NumDiffCoeff *= std::pow(2.0,-6);
                  -
                  149  }
                  -
                  150 
                  -
                  151  advChoice.init_params();
                  -
                  152  diffChoice.init_params();
                  -
                  153  spongeChoice.init_params();
                  -
                  154 
                  -
                  155  turbChoice.resize(max_level+1);
                  -
                  156  for (int lev = 0; lev <= max_level; lev++) {
                  -
                  157  turbChoice[lev].init_params(lev,max_level);
                  -
                  158  }
                  -
                  159 
                  -
                  160  // If running LES/PBL then must use "ConstantAlpha"
                  -
                  161  for (int lev = 0; lev <= max_level; lev++) {
                  -
                  162  if (turbChoice[lev].les_type != LESType::None) {
                  -
                  163  if ( diffChoice.molec_diff_type == MolecDiffType::ConstantAlpha ) {
                  -
                  164  amrex::Error("We don't allow LES with MolecDiffType::ConstantAlpha");
                  -
                  165  }
                  -
                  166  }
                  -
                  167  }
                  -
                  168  }
                  +
                  127  if(pp.queryarr("abl_geo_forcing",abl_geo_forcing_in)) {
                  +
                  128  amrex::Print() << "Specified abl_geo_forcing: (";
                  +
                  129  for (int i = 0; i < AMREX_SPACEDIM; ++i) {
                  +
                  130  abl_geo_forcing[i] = abl_geo_forcing_in[i];
                  +
                  131  amrex::Print() << abl_geo_forcing[i] << " ";
                  +
                  132  }
                  +
                  133  amrex::Print() << ")" << std::endl;
                  +
                  134  }
                  +
                  135 
                  +
                  136  if (use_coriolis)
                  +
                  137  {
                  +
                  138  build_coriolis_forcings();
                  +
                  139  }
                  +
                  140 
                  +
                  141  pp.query("Ave_Plane", ave_plane);
                  +
                  142 
                  +
                  143 #ifdef ERF_USE_MOISTURE
                  +
                  144  pp.query("mp_clouds", do_cloud);
                  +
                  145  pp.query("mp_precip", do_precip);
                  +
                  146 #endif
                  +
                  147 
                  +
                  148  // Use numerical diffusion?
                  +
                  149  pp.query("use_NumDiff",use_NumDiff);
                  +
                  150  if(use_NumDiff) {
                  +
                  151  pp.query("NumDiffCoeff",NumDiffCoeff);
                  +
                  152  AMREX_ASSERT_WITH_MESSAGE(( (NumDiffCoeff >= 0.) && (NumDiffCoeff <= 1.) ),
                  +
                  153  "Numerical diffusion coefficient must be between 0 & 1.");
                  +
                  154  NumDiffCoeff *= std::pow(2.0,-6);
                  +
                  155  }
                  +
                  156 
                  +
                  157  advChoice.init_params();
                  +
                  158  diffChoice.init_params();
                  +
                  159  spongeChoice.init_params();
                  +
                  160 
                  +
                  161  turbChoice.resize(max_level+1);
                  +
                  162  for (int lev = 0; lev <= max_level; lev++) {
                  +
                  163  turbChoice[lev].init_params(lev,max_level);
                  +
                  164  }
                  +
                  165 
                  +
                  166  // If running LES/PBL then must use "ConstantAlpha"
                  +
                  167  for (int lev = 0; lev <= max_level; lev++) {
                  +
                  168  if (turbChoice[lev].les_type != LESType::None) {
                  +
                  169  if ( diffChoice.molec_diff_type == MolecDiffType::ConstantAlpha ) {
                  +
                  170  amrex::Error("We don't allow LES with MolecDiffType::ConstantAlpha");
                  +
                  171  }
                  +
                  172  }
                  +
                  173  }
                  +
                  174  }
                  CONST_GRAV
                  constexpr amrex::Real CONST_GRAV
                  Definition: ERF_Constants.H:20
                  R_d
                  constexpr amrex::Real R_d
                  Definition: ERF_Constants.H:10
                  @@ -538,25 +544,25 @@

                  AdvChoice::init_params
                  void init_params()
                  Definition: AdvStruct.H:21

                  DiffChoice::init_params
                  void init_params()
                  Definition: DiffStruct.H:21
                  DiffChoice::molec_diff_type
                  MolecDiffType molec_diff_type
                  Definition: DiffStruct.H:76
                  -
                  SolverChoice::use_terrain
                  bool use_terrain
                  Definition: DataStruct.H:255
                  -
                  SolverChoice::rayleigh_damp_T
                  bool rayleigh_damp_T
                  Definition: DataStruct.H:271
                  -
                  SolverChoice::dz0
                  amrex::Real dz0
                  Definition: DataStruct.H:284
                  -
                  SolverChoice::use_lagged_delta_rt
                  bool use_lagged_delta_rt
                  Definition: DataStruct.H:274
                  -
                  SolverChoice::rayleigh_damp_V
                  bool rayleigh_damp_V
                  Definition: DataStruct.H:269
                  -
                  SolverChoice::rdOcp
                  amrex::Real rdOcp
                  Definition: DataStruct.H:279
                  -
                  SolverChoice::build_coriolis_forcings
                  void build_coriolis_forcings()
                  Definition: DataStruct.H:207
                  -
                  SolverChoice::c_p
                  amrex::Real c_p
                  Definition: DataStruct.H:278
                  -
                  SolverChoice::gravity
                  amrex::Real gravity
                  Definition: DataStruct.H:277
                  -
                  SolverChoice::rayleigh_damp_U
                  bool rayleigh_damp_U
                  Definition: DataStruct.H:268
                  -
                  SolverChoice::grid_stretching_ratio
                  amrex::Real grid_stretching_ratio
                  Definition: DataStruct.H:282
                  -
                  SolverChoice::terrain_type
                  int terrain_type
                  Definition: DataStruct.H:256
                  -
                  SolverChoice::NumDiffCoeff
                  amrex::Real NumDiffCoeff
                  Definition: DataStruct.H:301
                  -
                  SolverChoice::test_mapfactor
                  bool test_mapfactor
                  Definition: DataStruct.H:253
                  -
                  SolverChoice::use_NumDiff
                  bool use_NumDiff
                  Definition: DataStruct.H:300
                  -
                  SolverChoice::zsurf
                  amrex::Real zsurf
                  Definition: DataStruct.H:283
                  -
                  SolverChoice::rayleigh_damp_W
                  bool rayleigh_damp_W
                  Definition: DataStruct.H:270
                  -
                  SolverChoice::buoyancy_type
                  int buoyancy_type
                  Definition: DataStruct.H:260
                  -
                  SolverChoice::ave_plane
                  int ave_plane
                  Definition: DataStruct.H:307
                  +
                  SolverChoice::use_terrain
                  bool use_terrain
                  Definition: DataStruct.H:261
                  +
                  SolverChoice::rayleigh_damp_T
                  bool rayleigh_damp_T
                  Definition: DataStruct.H:277
                  +
                  SolverChoice::dz0
                  amrex::Real dz0
                  Definition: DataStruct.H:290
                  +
                  SolverChoice::use_lagged_delta_rt
                  bool use_lagged_delta_rt
                  Definition: DataStruct.H:280
                  +
                  SolverChoice::rayleigh_damp_V
                  bool rayleigh_damp_V
                  Definition: DataStruct.H:275
                  +
                  SolverChoice::rdOcp
                  amrex::Real rdOcp
                  Definition: DataStruct.H:285
                  +
                  SolverChoice::build_coriolis_forcings
                  void build_coriolis_forcings()
                  Definition: DataStruct.H:213
                  +
                  SolverChoice::c_p
                  amrex::Real c_p
                  Definition: DataStruct.H:284
                  +
                  SolverChoice::gravity
                  amrex::Real gravity
                  Definition: DataStruct.H:283
                  +
                  SolverChoice::rayleigh_damp_U
                  bool rayleigh_damp_U
                  Definition: DataStruct.H:274
                  +
                  SolverChoice::grid_stretching_ratio
                  amrex::Real grid_stretching_ratio
                  Definition: DataStruct.H:288
                  +
                  SolverChoice::terrain_type
                  int terrain_type
                  Definition: DataStruct.H:262
                  +
                  SolverChoice::NumDiffCoeff
                  amrex::Real NumDiffCoeff
                  Definition: DataStruct.H:307
                  +
                  SolverChoice::test_mapfactor
                  bool test_mapfactor
                  Definition: DataStruct.H:259
                  +
                  SolverChoice::use_NumDiff
                  bool use_NumDiff
                  Definition: DataStruct.H:306
                  +
                  SolverChoice::zsurf
                  amrex::Real zsurf
                  Definition: DataStruct.H:289
                  +
                  SolverChoice::rayleigh_damp_W
                  bool rayleigh_damp_W
                  Definition: DataStruct.H:276
                  +
                  SolverChoice::buoyancy_type
                  int buoyancy_type
                  Definition: DataStruct.H:266
                  +
                  SolverChoice::ave_plane
                  int ave_plane
                  Definition: DataStruct.H:313
                  SpongeChoice::init_params
                  void init_params()
                  Definition: SpongeStruct.H:17
                  Here is the call graph for this function:
                  diff --git a/structdonelan__flux.html b/structdonelan__flux.html index f4366983ef..cb1dd9cbcf 100644 --- a/structdonelan__flux.html +++ b/structdonelan__flux.html @@ -144,8 +144,8 @@

                  -
                  795  : zlo(l_zlo) {}
                  -
                  donelan_flux::zlo
                  int zlo
                  Definition: MOSTStress.H:980
                  +
                  797  : zlo(l_zlo) {}
                  +
                  donelan_flux::zlo
                  int zlo
                  Definition: MOSTStress.H:982

                  @@ -267,33 +267,33 @@

                  -
                  817  {
                  -
                  818  amrex::Real rho, theta, eta;
                  -
                  819  int ie, je, ic, jc;
                  -
                  820 
                  -
                  821  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  -
                  822  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  -
                  823  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  -
                  824  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  -
                  825 
                  -
                  826  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  -
                  827  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  -
                  828  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  -
                  829  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  -
                  830 
                  -
                  831  rho = cons_arr(ic,jc,zlo,Rho_comp);
                  -
                  832  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                  -
                  833  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                  -
                  834 
                  -
                  835  amrex::Real Cd = 0.0012;
                  -
                  836  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                  -
                  837  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                  -
                  838  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                  -
                  839  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
                  -
                  840  amrex::Real deltaz = dz * (zlo - k);
                  -
                  841 
                  -
                  842  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
                  -
                  843  }
                  +
                  819  {
                  +
                  820  amrex::Real rho, theta, eta;
                  +
                  821  int ie, je, ic, jc;
                  +
                  822 
                  +
                  823  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  +
                  824  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  +
                  825  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  +
                  826  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  +
                  827 
                  +
                  828  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  +
                  829  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  +
                  830  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  +
                  831  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  +
                  832 
                  +
                  833  rho = cons_arr(ic,jc,zlo,Rho_comp);
                  +
                  834  theta = cons_arr(ic,jc,zlo,RhoTheta_comp) / rho;
                  +
                  835  eta = eta_arr(ie,je,zlo,EddyDiff::Theta_v); // == rho * alpha [kg/m^3 * m^2/s]
                  +
                  836 
                  +
                  837  amrex::Real Cd = 0.0012;
                  +
                  838  amrex::Real wsp_mean = umm_arr(ic,jc,zlo);
                  +
                  839  amrex::Real theta_surf = t_surf_arr(ic,jc,zlo);
                  +
                  840  amrex::Real theta_mean = tm_arr(ic,jc,zlo);
                  +
                  841  amrex::Real moflux = Cd * wsp_mean * (theta_surf - theta_mean);
                  +
                  842  amrex::Real deltaz = dz * (zlo - k);
                  +
                  843 
                  +
                  844  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
                  +
                  845  }
                  Rho_comp
                  #define Rho_comp
                  Definition: IndexDefines.H:12
                  RhoTheta_comp
                  #define RhoTheta_comp
                  Definition: IndexDefines.H:13
                  EddyDiff::Theta_v
                  @ Theta_v
                  Definition: IndexDefines.H:143
                  @@ -407,55 +407,55 @@

                  -
                  862  {
                  -
                  863  amrex::Real velx, vely, rho, eta;
                  -
                  864  int jy, ie, je, ic, jc;
                  -
                  865 
                  -
                  866  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                  -
                  867  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                  -
                  868 
                  -
                  869  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                  -
                  870  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                  -
                  871 
                  -
                  872  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                  -
                  873  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  -
                  874  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  -
                  875  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  -
                  876 
                  -
                  877  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                  -
                  878  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  -
                  879  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  -
                  880  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  -
                  881 
                  -
                  882  velx = velx_arr(i,j,zlo);
                  -
                  883  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                  -
                  884  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                  -
                  885  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                  -
                  886  + cons_arr(ic ,jc,zlo,Rho_comp) );
                  -
                  887  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                  -
                  888  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                  -
                  889 
                  -
                  890  amrex::Real Cd = 0.001;
                  -
                  891  const amrex::Real c = 7e-5;
                  -
                  892  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  -
                  893  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                  -
                  894  if (wsp_mean <= 5.0) {
                  -
                  895  Cd = 0.001;
                  -
                  896  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                  -
                  897  Cd = 0.001 + c * (wsp_mean - 5.0);
                  -
                  898  } else {
                  -
                  899  Cd = 0.0024;
                  -
                  900  }
                  -
                  901  amrex::Real stressx = Cd * velx * wsp;
                  -
                  902  amrex::Real deltaz = dz * (zlo - k);
                  -
                  903 
                  -
                  904  if (var_idx == Vars::xmom) {
                  -
                  905  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
                  -
                  906  } else {
                  -
                  907  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
                  -
                  908  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
                  -
                  909  }
                  -
                  910  }
                  +
                  864  {
                  +
                  865  amrex::Real velx, vely, rho, eta;
                  +
                  866  int jy, ie, je, ic, jc;
                  +
                  867 
                  +
                  868  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                  +
                  869  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                  +
                  870 
                  +
                  871  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                  +
                  872  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                  +
                  873 
                  +
                  874  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                  +
                  875  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  +
                  876  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  +
                  877  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  +
                  878 
                  +
                  879  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                  +
                  880  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  +
                  881  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  +
                  882  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  +
                  883 
                  +
                  884  velx = velx_arr(i,j,zlo);
                  +
                  885  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                  +
                  886  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                  +
                  887  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                  +
                  888  + cons_arr(ic ,jc,zlo,Rho_comp) );
                  +
                  889  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                  +
                  890  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                  +
                  891 
                  +
                  892  amrex::Real Cd = 0.001;
                  +
                  893  const amrex::Real c = 7e-5;
                  +
                  894  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  +
                  895  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                  +
                  896  if (wsp_mean <= 5.0) {
                  +
                  897  Cd = 0.001;
                  +
                  898  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                  +
                  899  Cd = 0.001 + c * (wsp_mean - 5.0);
                  +
                  900  } else {
                  +
                  901  Cd = 0.0024;
                  +
                  902  }
                  +
                  903  amrex::Real stressx = Cd * velx * wsp;
                  +
                  904  amrex::Real deltaz = dz * (zlo - k);
                  +
                  905 
                  +
                  906  if (var_idx == Vars::xmom) {
                  +
                  907  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
                  +
                  908  } else {
                  +
                  909  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
                  +
                  910  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
                  +
                  911  }
                  +
                  912  }
                  EddyDiff::Mom_v
                  @ Mom_v
                  Definition: IndexDefines.H:142
                  Vars::xvel
                  @ xvel
                  Definition: IndexDefines.H:81
                  Vars::xmom
                  @ xmom
                  Definition: IndexDefines.H:85
                  @@ -567,55 +567,55 @@

                  -
                  929  {
                  -
                  930  amrex::Real velx, vely, rho, eta;
                  -
                  931  int ix, ie, je, ic, jc;
                  -
                  932 
                  -
                  933  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                  -
                  934  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                  -
                  935 
                  -
                  936  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                  -
                  937  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                  -
                  938 
                  -
                  939  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  -
                  940  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                  -
                  941  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  -
                  942  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  -
                  943 
                  -
                  944  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  -
                  945  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                  -
                  946  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  -
                  947  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  -
                  948 
                  -
                  949  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                  -
                  950  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                  -
                  951  vely = vely_arr(i,j,zlo);
                  -
                  952  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                  -
                  953  + cons_arr(ic,jc ,zlo,Rho_comp) );
                  -
                  954  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                  -
                  955  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                  -
                  956 
                  -
                  957  amrex::Real Cd = 0.001;
                  -
                  958  const amrex::Real c = 7e-5;
                  -
                  959  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  -
                  960  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                  -
                  961  if (wsp_mean <= 5.0) {
                  -
                  962  Cd = 0.001;
                  -
                  963  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                  -
                  964  Cd = 0.001 + c * (wsp_mean - 5.0);
                  -
                  965  } else {
                  -
                  966  Cd = 0.0024;
                  -
                  967  }
                  -
                  968  amrex::Real stressy = Cd * vely * wsp;
                  -
                  969  amrex::Real deltaz = dz * (zlo - k);
                  -
                  970 
                  -
                  971  if (var_idx == Vars::ymom) {
                  -
                  972  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
                  -
                  973  } else {
                  -
                  974  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
                  -
                  975  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
                  -
                  976  }
                  -
                  977  }
                  +
                  931  {
                  +
                  932  amrex::Real velx, vely, rho, eta;
                  +
                  933  int ix, ie, je, ic, jc;
                  +
                  934 
                  +
                  935  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                  +
                  936  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                  +
                  937 
                  +
                  938  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                  +
                  939  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                  +
                  940 
                  +
                  941  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  +
                  942  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                  +
                  943  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  +
                  944  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  +
                  945 
                  +
                  946  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  +
                  947  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                  +
                  948  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  +
                  949  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  +
                  950 
                  +
                  951  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                  +
                  952  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                  +
                  953  vely = vely_arr(i,j,zlo);
                  +
                  954  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                  +
                  955  + cons_arr(ic,jc ,zlo,Rho_comp) );
                  +
                  956  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                  +
                  957  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                  +
                  958 
                  +
                  959  amrex::Real Cd = 0.001;
                  +
                  960  const amrex::Real c = 7e-5;
                  +
                  961  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  +
                  962  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                  +
                  963  if (wsp_mean <= 5.0) {
                  +
                  964  Cd = 0.001;
                  +
                  965  } else if (wsp_mean < 25.0 && wsp_mean > 5.0) {
                  +
                  966  Cd = 0.001 + c * (wsp_mean - 5.0);
                  +
                  967  } else {
                  +
                  968  Cd = 0.0024;
                  +
                  969  }
                  +
                  970  amrex::Real stressy = Cd * vely * wsp;
                  +
                  971  amrex::Real deltaz = dz * (zlo - k);
                  +
                  972 
                  +
                  973  if (var_idx == Vars::ymom) {
                  +
                  974  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
                  +
                  975  } else {
                  +
                  976  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
                  +
                  977  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
                  +
                  978  }
                  +
                  979  }
                  Vars::yvel
                  @ yvel
                  Definition: IndexDefines.H:82
                  Vars::ymom
                  @ ymom
                  Definition: IndexDefines.H:86
                  diff --git a/structmoeng__flux-members.html b/structmoeng__flux-members.html index 9be4fab678..5ca4dfbd6c 100644 --- a/structmoeng__flux-members.html +++ b/structmoeng__flux-members.html @@ -92,8 +92,9 @@ compute_t_flux(const int &i, const int &j, const int &k, const int &n, const int &icomp, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &tm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< const amrex::Real > &t_star_arr, const amrex::Array4< const amrex::Real > &t_surf_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline compute_u_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &um_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline compute_v_flux(const int &i, const int &j, const int &k, const int &icomp, const int &var_idx, const amrex::Real &dz, const amrex::Array4< const amrex::Real > &cons_arr, const amrex::Array4< const amrex::Real > &velx_arr, const amrex::Array4< const amrex::Real > &vely_arr, const amrex::Array4< const amrex::Real > &eta_arr, const amrex::Array4< const amrex::Real > &umm_arr, const amrex::Array4< const amrex::Real > &vm_arr, const amrex::Array4< const amrex::Real > &u_star_arr, const amrex::Array4< amrex::Real > &dest_arr) constmoeng_fluxinline - moeng_flux(int l_zlo)moeng_fluxinline - zlomoeng_fluxprivate + EPSmoeng_fluxprivatestatic + moeng_flux(int l_zlo)moeng_fluxinline + zlomoeng_fluxprivate

                  diff --git a/structmoeng__flux.html b/structmoeng__flux.html index cef0df1f2e..84d1fe14de 100644 --- a/structmoeng__flux.html +++ b/structmoeng__flux.html @@ -85,6 +85,7 @@
                  Public Member Functions | Private Attributes | +Static Private Attributes | List of all members
                  moeng_flux Struct Reference
                  @@ -97,8 +98,9 @@
                  Collaboration graph
                  - - + + +
                  [legend]
                  @@ -117,6 +119,11 @@ Private Attributes +
                  int zlo
                   
                  + + +

                  +Static Private Attributes

                  static constexpr amrex::Real EPS = 1e-16
                   

                  Detailed Description

                  Moeng flux formulation

                  @@ -145,7 +152,7 @@

                  591  : zlo(l_zlo) {}
                  -
                  moeng_flux::zlo
                  int zlo
                  Definition: MOSTStress.H:785
                  +
                  moeng_flux::zlo
                  int zlo
                  Definition: MOSTStress.H:786

                  @@ -306,16 +313,18 @@

                  649  amrex::Real wsp = sqrt(velx*velx+vely*vely);

                  650  amrex::Real num1 = (theta-theta_mean)*wsp_mean;
                  651  amrex::Real num2 = (theta_mean-theta_surf)*wsp;
                  -
                  652  amrex::Real moflux = tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean);
                  -
                  653  amrex::Real deltaz = dz * (zlo - k);
                  -
                  654 
                  -
                  655  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
                  -
                  656  }
                  +
                  652  amrex::Real moflux = (std::abs(tstar) > EPS) ?
                  +
                  653  tstar*ustar*(num1+num2)/((theta_mean-theta_surf)*wsp_mean) : 0.0;
                  +
                  654  amrex::Real deltaz = dz * (zlo - k);
                  +
                  655 
                  +
                  656  dest_arr(i,j,k,icomp+n) = rho*(theta - moflux*rho/eta*deltaz);
                  +
                  657  }
                  Rho_comp
                  #define Rho_comp
                  Definition: IndexDefines.H:12
                  RhoTheta_comp
                  #define RhoTheta_comp
                  Definition: IndexDefines.H:13
                  EddyDiff::Theta_v
                  @ Theta_v
                  Definition: IndexDefines.H:143
                  MicVar::rho
                  @ rho
                  Definition: Microphysics.H:33
                  MicVar::theta
                  @ theta
                  Definition: Microphysics.H:31
                  +
                  moeng_flux::EPS
                  static constexpr amrex::Real EPS
                  Definition: MOSTStress.H:787

                  @@ -424,51 +433,51 @@

                  -
                  675  {
                  -
                  676  amrex::Real velx, vely, rho, eta;
                  -
                  677  int jy, ie, je, ic, jc;
                  -
                  678 
                  -
                  679  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                  -
                  680  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                  -
                  681 
                  -
                  682  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                  -
                  683  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                  -
                  684 
                  -
                  685  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                  -
                  686  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  -
                  687  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  -
                  688  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  -
                  689 
                  -
                  690  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                  -
                  691  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  -
                  692  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  -
                  693  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  -
                  694 
                  -
                  695  velx = velx_arr(i,j,zlo);
                  -
                  696  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                  -
                  697  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                  -
                  698  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                  -
                  699  + cons_arr(ic ,jc,zlo,Rho_comp) );
                  -
                  700  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                  -
                  701  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                  -
                  702 
                  -
                  703  amrex::Real umean = um_arr(i,j,zlo);
                  -
                  704  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                  -
                  705  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                  -
                  706 
                  -
                  707  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  -
                  708  amrex::Real num1 = (velx-umean)*wsp_mean;
                  -
                  709  amrex::Real num2 = umean*wsp;
                  -
                  710  amrex::Real stressx = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
                  -
                  711  amrex::Real deltaz = dz * (zlo - k);
                  -
                  712 
                  -
                  713  if (var_idx == Vars::xmom) {
                  -
                  714  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
                  -
                  715  } else {
                  -
                  716  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
                  -
                  717  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
                  -
                  718  }
                  -
                  719  }
                  +
                  676  {
                  +
                  677  amrex::Real velx, vely, rho, eta;
                  +
                  678  int jy, ie, je, ic, jc;
                  +
                  679 
                  +
                  680  int iylo = i <= lbound(vely_arr).x ? lbound(vely_arr).x : i-1;
                  +
                  681  int iyhi = i > ubound(vely_arr).x ? ubound(vely_arr).x : i;
                  +
                  682 
                  +
                  683  jy = j < lbound(vely_arr).y ? lbound(vely_arr).y : j;
                  +
                  684  jy = jy > ubound(vely_arr).y-1 ? ubound(vely_arr).y-1 : jy;
                  +
                  685 
                  +
                  686  ie = i < lbound(eta_arr).x+1 ? lbound(eta_arr).x+1 : i;
                  +
                  687  je = j < lbound(eta_arr).y ? lbound(eta_arr).y : j;
                  +
                  688  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  +
                  689  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  +
                  690 
                  +
                  691  ic = i < lbound(cons_arr).x+1 ? lbound(cons_arr).x+1 : i;
                  +
                  692  jc = j < lbound(cons_arr).y ? lbound(cons_arr).y : j;
                  +
                  693  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  +
                  694  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  +
                  695 
                  +
                  696  velx = velx_arr(i,j,zlo);
                  +
                  697  vely = 0.25*( vely_arr(iyhi,jy,zlo)+vely_arr(iyhi,jy+1,zlo)
                  +
                  698  + vely_arr(iylo,jy,zlo)+vely_arr(iylo,jy+1,zlo) );
                  +
                  699  rho = 0.5 *( cons_arr(ic-1,jc,zlo,Rho_comp)
                  +
                  700  + cons_arr(ic ,jc,zlo,Rho_comp) );
                  +
                  701  eta = 0.5 *( eta_arr(ie-1,je,zlo,EddyDiff::Mom_v)
                  +
                  702  + eta_arr(ie ,je,zlo,EddyDiff::Mom_v) );
                  +
                  703 
                  +
                  704  amrex::Real umean = um_arr(i,j,zlo);
                  +
                  705  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic-1,jc,zlo) + umm_arr(ic,jc,zlo) );
                  +
                  706  amrex::Real ustar = 0.5 * ( u_star_arr(ic-1,jc,zlo) + u_star_arr(ic,jc,zlo) );
                  +
                  707 
                  +
                  708  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  +
                  709  amrex::Real num1 = (velx-umean)*wsp_mean;
                  +
                  710  amrex::Real num2 = umean*wsp;
                  +
                  711  amrex::Real stressx = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
                  +
                  712  amrex::Real deltaz = dz * (zlo - k);
                  +
                  713 
                  +
                  714  if (var_idx == Vars::xmom) {
                  +
                  715  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho*rho/eta*deltaz;
                  +
                  716  } else {
                  +
                  717  AMREX_ALWAYS_ASSERT(var_idx == Vars::xvel);
                  +
                  718  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressx*rho/eta*deltaz;
                  +
                  719  }
                  +
                  720  }
                  EddyDiff::Mom_v
                  @ Mom_v
                  Definition: IndexDefines.H:142
                  Vars::xvel
                  @ xvel
                  Definition: IndexDefines.H:81
                  Vars::xmom
                  @ xmom
                  Definition: IndexDefines.H:85
                  @@ -580,57 +589,81 @@

                  -
                  738  {
                  -
                  739  amrex::Real velx, vely, rho, eta;
                  -
                  740  int ix, ie, je, ic, jc;
                  -
                  741 
                  -
                  742  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                  -
                  743  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                  -
                  744 
                  -
                  745  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                  -
                  746  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                  -
                  747 
                  -
                  748  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  -
                  749  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                  -
                  750  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  -
                  751  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  -
                  752 
                  -
                  753  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  -
                  754  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                  -
                  755  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  -
                  756  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  -
                  757 
                  -
                  758  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                  -
                  759  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                  -
                  760  vely = vely_arr(i,j,zlo);
                  -
                  761  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                  -
                  762  + cons_arr(ic,jc ,zlo,Rho_comp) );
                  -
                  763  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                  -
                  764  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                  -
                  765 
                  -
                  766  amrex::Real vmean = vm_arr(i,j,zlo);
                  -
                  767  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                  -
                  768  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                  -
                  769 
                  -
                  770  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  -
                  771  amrex::Real num1 = (vely-vmean)*wsp_mean;
                  -
                  772  amrex::Real num2 = vmean*wsp;
                  -
                  773  amrex::Real stressy = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
                  -
                  774  amrex::Real deltaz = dz * (zlo - k);
                  -
                  775 
                  -
                  776  if (var_idx == Vars::ymom) {
                  -
                  777  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
                  -
                  778  } else {
                  -
                  779  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
                  -
                  780  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
                  -
                  781  }
                  -
                  782  }
                  +
                  739  {
                  +
                  740  amrex::Real velx, vely, rho, eta;
                  +
                  741  int ix, ie, je, ic, jc;
                  +
                  742 
                  +
                  743  ix = i < lbound(velx_arr).x ? lbound(velx_arr).x : i;
                  +
                  744  ix = ix > ubound(velx_arr).x ? ubound(velx_arr).x : ix;
                  +
                  745 
                  +
                  746  int jxlo = j <= lbound(velx_arr).y ? lbound(velx_arr).y : j-1;
                  +
                  747  int jxhi = j > ubound(velx_arr).y ? ubound(velx_arr).y : j;
                  +
                  748 
                  +
                  749  ie = i < lbound(eta_arr).x ? lbound(eta_arr).x : i;
                  +
                  750  je = j < lbound(eta_arr).y+1 ? lbound(eta_arr).y+1 : j;
                  +
                  751  ie = ie > ubound(eta_arr).x ? ubound(eta_arr).x : ie;
                  +
                  752  je = je > ubound(eta_arr).y ? ubound(eta_arr).y : je;
                  +
                  753 
                  +
                  754  ic = i < lbound(cons_arr).x ? lbound(cons_arr).x : i;
                  +
                  755  jc = j < lbound(cons_arr).y+1 ? lbound(cons_arr).y+1 : j;
                  +
                  756  ic = ic > ubound(cons_arr).x ? ubound(cons_arr).x : ic;
                  +
                  757  jc = jc > ubound(cons_arr).y ? ubound(cons_arr).y : jc;
                  +
                  758 
                  +
                  759  velx = 0.25*( velx_arr(ix,jxhi,zlo)+velx_arr(ix+1,jxhi,zlo)
                  +
                  760  + velx_arr(ix,jxlo,zlo)+velx_arr(ix+1,jxlo,zlo) );
                  +
                  761  vely = vely_arr(i,j,zlo);
                  +
                  762  rho = 0.5*( cons_arr(ic,jc-1,zlo,Rho_comp)
                  +
                  763  + cons_arr(ic,jc ,zlo,Rho_comp) );
                  +
                  764  eta = 0.5*( eta_arr(ie,je-1,zlo,EddyDiff::Mom_v)
                  +
                  765  + eta_arr(ie,je ,zlo,EddyDiff::Mom_v) );
                  +
                  766 
                  +
                  767  amrex::Real vmean = vm_arr(i,j,zlo);
                  +
                  768  amrex::Real wsp_mean = 0.5 * ( umm_arr(ic,jc-1,zlo) + umm_arr(ic,jc,zlo) );
                  +
                  769  amrex::Real ustar = 0.5 * ( u_star_arr(ic,jc-1,zlo) + u_star_arr(ic,jc,zlo) );
                  +
                  770 
                  +
                  771  amrex::Real wsp = sqrt(velx*velx+vely*vely);
                  +
                  772  amrex::Real num1 = (vely-vmean)*wsp_mean;
                  +
                  773  amrex::Real num2 = vmean*wsp;
                  +
                  774  amrex::Real stressy = ustar*ustar*(num1+num2)/(wsp_mean*wsp_mean);
                  +
                  775  amrex::Real deltaz = dz * (zlo - k);
                  +
                  776 
                  +
                  777  if (var_idx == Vars::ymom) {
                  +
                  778  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho*rho/eta*deltaz;
                  +
                  779  } else {
                  +
                  780  AMREX_ALWAYS_ASSERT(var_idx == Vars::yvel);
                  +
                  781  dest_arr(i,j,k,icomp) = dest_arr(i,j,zlo,icomp) - stressy*rho/eta*deltaz;
                  +
                  782  }
                  +
                  783  }
                  Vars::yvel
                  @ yvel
                  Definition: IndexDefines.H:82
                  Vars::ymom
                  @ ymom
                  Definition: IndexDefines.H:86

                  Member Data Documentation

                  + +

                  ◆ EPS

                  + +
                  +
                  + + + + + +
                  + + + + +
                  constexpr amrex::Real moeng_flux::EPS = 1e-16
                  +                   		+staticconstexprprivate
                  +
                  + +

                  Referenced by compute_t_flux().

                  + +
                  +

                  ◆ zlo

                  diff --git a/structmoeng__flux.js b/structmoeng__flux.js index 0afa00de4f..c196ea60ad 100644 --- a/structmoeng__flux.js +++ b/structmoeng__flux.js @@ -4,5 +4,6 @@ var structmoeng__flux = [ "compute_t_flux", "structmoeng__flux.html#a7abd8ea84318d961020b19ec148ac85a", null ], [ "compute_u_flux", "structmoeng__flux.html#a33b60198e07712f81a7fc34b0b8abf9d", null ], [ "compute_v_flux", "structmoeng__flux.html#ac2f5b47f8120a677960f63d24a0afd89", null ], + [ "EPS", "structmoeng__flux.html#a24d0c85d3f7994fa8e2a8004eea44237", null ], [ "zlo", "structmoeng__flux.html#a32dd97697698052a006613da3a0b7e67", null ] ]; \ No newline at end of file diff --git a/structmoeng__flux__coll__graph.map b/structmoeng__flux__coll__graph.map index 6b6dd8a47b..e94bb09252 100644 --- a/structmoeng__flux__coll__graph.map +++ b/structmoeng__flux__coll__graph.map @@ -1,4 +1,5 @@ - - + + + diff --git a/structmoeng__flux__coll__graph.md5 b/structmoeng__flux__coll__graph.md5 index 0ffc41cb36..0d0d61e816 100644 --- a/structmoeng__flux__coll__graph.md5 +++ b/structmoeng__flux__coll__graph.md5 @@ -1 +1 @@ -66c53433ba746034756c517878a39242 \ No newline at end of file +e553b4a45b792cd1097dadee92d83580 \ No newline at end of file diff --git a/structmoeng__flux__coll__graph.png b/structmoeng__flux__coll__graph.png index 8464fd8891dc1fa8b14ab326ef0a7b520990e04a..e4d40cce8209f4abafd6a6803a11069277fdae5a 100644 GIT binary patch literal 4701 zcmYjV1y~f_y9ZGz36VxZLRezyZt0f(XsM-B8dj8&5D5hPb%WW3}9ZjO^zx&&c>TDt+IyyZ~b&H6io#M#H^d3w7s>(gkR|De7_c_>d^V4g) zg>J8FFEaB9X+kGb*`%@QwUN@vn}wPu4Ax;iTc&!q(%(ZLx@`Yi6Ml`_{79OGC6)s>4*Aq0&aJ?<>%1h5oT;MP9T+=E<+PGJV(JR zoaxp^!d!!Hl2>M1wRMOJYko2-i?}@ErNV+rmQ53XAC2SB^7jn$$;wPL-sqyI1W5Ha; 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