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rnaseq_env.yml
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name: rnaseq
channels:
- conda-forge
- anaconda
- bioconda
- defaults
dependencies:
- ca-certificates=2018.03.07=0
- libcurl=7.61.0=h1ad7b7a_0
- openssl=1.0.2p=h14c3975_0
- bioconductor-annotate=1.50.0=r3.3.2_1
- bioconductor-annotationdbi=1.38.0=r3.3.2_0
- bioconductor-ballgown=2.2.0=r3.3.2_0
- bioconductor-biobase=2.34.0=r3.3.2_0
- bioconductor-biocgenerics=0.22.0=r3.3.2_0
- bioconductor-biocparallel=1.6.6=r3.3.2_1
- bioconductor-biostrings=2.42.1=r3.3.2_0
- bioconductor-genefilter=1.58.1=r3.3.2_0
- bioconductor-genomeinfodb=1.10.3=r3.3.2_0
- bioconductor-genomicalignments=1.10.0=r3.3.2_0
- bioconductor-genomicranges=1.26.4=r3.3.2_0
- bioconductor-iranges=2.8.2=r3.3.2_0
- bioconductor-limma=3.30.13=r3.3.2_0
- bioconductor-rsamtools=1.26.1=r3.3.2_0
- bioconductor-rtracklayer=1.34.2=r3.3.2_1
- bioconductor-s4vectors=0.12.2=r3.3.2_0
- bioconductor-summarizedexperiment=1.4.0=r3.3.2_2
- bioconductor-sva=3.20.0=r3.3.2_0
- bioconductor-xvector=0.14.1=r3.3.2_0
- bioconductor-zlibbioc=1.20.0=r3.3.2_1
- gclib=0.0.1=h2d50403_5
- gffcompare=0.10.1=0
- hisat2=2.0.5=py35_1
- java-jdk=8.0.92=1
- libdeflate=0.8=0
- perl-threaded=5.22.0=10
- r-bh=1.60.0_2=r3.3.2_0
- r-digest=0.6.12=r3.3.2_0
- r-futile.logger=1.4.1=r3.3.2_0
- r-futile.options=1.0.0=r3.3.2_0
- r-lambda.r=1.1.7=r3.3.2_0
- r-snow=0.4_1=r3.3.2_0
- samtools=1.8=4
- stringtie=1.3.4=py35_0
- libgcc-ng=7.2.0=hdf63c60_3
- libstdcxx-ng=7.2.0=hdf63c60_3
- ncurses=5.9=10
- _r-mutex=1.0.0=anacondar_1
- bzip2=1.0.6=3
- cairo=1.14.8=0
- certifi=2016.2.28=py35_0
- curl=7.54.1=0
- fontconfig=2.12.1=3
- freetype=2.5.5=2
- glib=2.50.2=1
- gsl=2.2.1=0
- harfbuzz=0.9.39=2
- icu=54.1=0
- jbig=2.1=0
- jpeg=9b=0
- krb5=1.13.2=0
- libffi=3.2.1=1
- libgcc=5.2.0=0
- libiconv=1.14=0
- libpng=1.6.30=1
- libssh2=1.8.0=0
- libtiff=4.0.6=3
- libxml2=2.9.4=0
- pango=1.40.3=1
- pcre=8.39=1
- pip=9.0.1=py35_1
- pixman=0.34.0=0
- python=3.5.4=0
- r-base=3.3.2=1
- r-bitops=1.0_6=r3.3.2_2
- r-dbi=0.5_1=r3.3.2_0
- r-lattice=0.20_34=r3.3.2_0
- r-matrix=1.2_7.1=r3.3.2_0
- r-memoise=1.0.0=r3.3.2_0
- r-mgcv=1.8_16=r3.3.2_0
- r-nlme=3.1_128=r3.3.2_0
- r-plogr=0.1_1=r3.3.2_0
- r-rcolorbrewer=1.1_2=r3.3.2_3
- r-rcpp=0.12.8=r3.3.2_0
- r-rcurl=1.95_4.8=r3.3.2_0
- r-rsqlite=1.1_1=r3.3.2_0
- r-survival=2.40_1=r3.3.2_0
- r-xml=3.98_1.5=r3.3.2_0
- r-xtable=1.8_2=r3.3.2_0
- readline=6.2=2
- setuptools=36.4.0=py35_1
- sqlite=3.13.0=0
- tk=8.5.18=0
- wheel=0.29.0=py35_0
- xz=5.2.3=0
- zlib=1.2.11=0
prefix: /net/bmc-pub7/data0/essigmannlab/dependencies/anaconda3/envs/rnaseq