activate

fgcz · Jun 7, 2024 · 18d57f3 · 18d57f3
1 parent eecdc9a
commit 18d57f3
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diff --git a/src/depiction_targeted_preproc/example/run.py b/src/depiction_targeted_preproc/example/run.py
@@ -32,6 +32,7 @@
         "cluster_default_stats_kmeans.csv",
         "cluster_default_kmeans.png",
         "cluster_default_hdbscan.png",
+        "qc/plot_marker_presence_mini.pdf",
     ],
 }
 

diff --git a/src/depiction_targeted_preproc/workflow/experimental.smk b/src/depiction_targeted_preproc/workflow/experimental.smk
@@ -75,7 +75,7 @@ rule qc_plot_marker_presence_mini:
         table_marker_distances_baseline="{sample}/qc/table_marker_distances_baseline_mini.parquet",
         table_marker_distances_calib="{sample}/qc/table_marker_distances_calib_mini.parquet"
     output:
-        pdf="{sample}/qc/plot_marker_presence.pdf"
+        pdf="{sample}/qc/plot_marker_presence_mini.pdf"
     shell:
         "python -m depiction_targeted_preproc.workflow.qc.plot_marker_presence"
         " --table-marker-distances-baseline {input.table_marker_distances_baseline}"