diff --git a/src/depiction_targeted_preproc/example/run.py b/src/depiction_targeted_preproc/example/run.py index 64e0882..b488638 100644 --- a/src/depiction_targeted_preproc/example/run.py +++ b/src/depiction_targeted_preproc/example/run.py @@ -32,6 +32,7 @@ "cluster_default_stats_kmeans.csv", "cluster_default_kmeans.png", "cluster_default_hdbscan.png", + "qc/plot_marker_presence_mini.pdf", ], } diff --git a/src/depiction_targeted_preproc/workflow/experimental.smk b/src/depiction_targeted_preproc/workflow/experimental.smk index e816401..c077d37 100644 --- a/src/depiction_targeted_preproc/workflow/experimental.smk +++ b/src/depiction_targeted_preproc/workflow/experimental.smk @@ -75,7 +75,7 @@ rule qc_plot_marker_presence_mini: table_marker_distances_baseline="{sample}/qc/table_marker_distances_baseline_mini.parquet", table_marker_distances_calib="{sample}/qc/table_marker_distances_calib_mini.parquet" output: - pdf="{sample}/qc/plot_marker_presence.pdf" + pdf="{sample}/qc/plot_marker_presence_mini.pdf" shell: "python -m depiction_targeted_preproc.workflow.qc.plot_marker_presence" " --table-marker-distances-baseline {input.table_marker_distances_baseline}"