From 5953952a0870dbcc6d14c031de34a1891364acc1 Mon Sep 17 00:00:00 2001
From: Leonardo Schwarz <leonardo.schwarz@fgcz.ethz.ch>
Date: Thu, 24 Oct 2024 16:28:34 +0200
Subject: [PATCH] consistent naming

---
 ...t_shift.py => calibration_method_constant_global_shift.py} | 4 ++--
 src/depiction/tools/calibrate/calibrate.py                    | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)
 rename src/depiction/calibration/methods/{calibration_method_global_constant_shift.py => calibration_method_constant_global_shift.py} (95%)

diff --git a/src/depiction/calibration/methods/calibration_method_global_constant_shift.py b/src/depiction/calibration/methods/calibration_method_constant_global_shift.py
similarity index 95%
rename from src/depiction/calibration/methods/calibration_method_global_constant_shift.py
rename to src/depiction/calibration/methods/calibration_method_constant_global_shift.py
index 4431995..27af4f0 100644
--- a/src/depiction/calibration/methods/calibration_method_global_constant_shift.py
+++ b/src/depiction/calibration/methods/calibration_method_constant_global_shift.py
@@ -7,8 +7,8 @@
 from depiction.image import MultiChannelImage
 
 
-class CalibrationMethodGlobalConstantShift(CalibrationMethod):
-    """Computes a global constant shift across all spectra and applies it.
+class CalibrationMethodConstantGlobalShift(CalibrationMethod):
+    """Computes a constant global shift across all spectra and applies it.
 
     This is a very naive method that is mainly used for a fair comparison of non-targeted calibration methods.
     """
diff --git a/src/depiction/tools/calibrate/calibrate.py b/src/depiction/tools/calibrate/calibrate.py
index 1fb069a..c1523af 100644
--- a/src/depiction/tools/calibrate/calibrate.py
+++ b/src/depiction/tools/calibrate/calibrate.py
@@ -12,7 +12,7 @@
     CalibrationMethodChemicalPeptideNoise,
 )
 from depiction.calibration.methods.calibration_method_dummy import CalibrationMethodDummy
-from depiction.calibration.methods.calibration_method_global_constant_shift import CalibrationMethodGlobalConstantShift
+from depiction.calibration.methods.calibration_method_constant_global_shift import CalibrationMethodConstantGlobalShift
 from depiction.calibration.methods.calibration_method_mcc import CalibrationMethodMassClusterCenterModel
 from depiction.calibration.methods.calibration_method_regress_shift import CalibrationMethodRegressShift
 from depiction.parallel_ops import ParallelConfig
@@ -56,7 +56,7 @@ def get_calibration_instance(config: CalibrationConfig, mass_list: Path | None):
                 peak_filtering=peak_filtering,
             )
         case CalibrationConstantGlobalShiftConfig():
-            return CalibrationMethodGlobalConstantShift(
+            return CalibrationMethodConstantGlobalShift(
                 ref_mz_arr=extract_reference_masses(mass_list),
             )
         case CalibrationChemicalPeptideNoiseConfig():