From 6d85e288858421caebd1c56ab0b9a83761e2d67a Mon Sep 17 00:00:00 2001
From: Leonardo Schwarz <leonardo.schwarz@fgcz.ethz.ch>
Date: Thu, 7 Nov 2024 13:39:06 +0100
Subject: [PATCH] rename the plot_test_mass_shifts.py

---
 .../pipeline_config/artifacts_mapping.py                        | 2 --
 .../qc/{plot_calibration_map_v2.py => plot_test_mass_shifts.py} | 0
 src/depiction_targeted_preproc/workflow/rules/rules_qc.smk      | 2 +-
 3 files changed, 1 insertion(+), 3 deletions(-)
 rename src/depiction_targeted_preproc/workflow/qc/{plot_calibration_map_v2.py => plot_test_mass_shifts.py} (100%)

diff --git a/src/depiction_targeted_preproc/pipeline_config/artifacts_mapping.py b/src/depiction_targeted_preproc/pipeline_config/artifacts_mapping.py
index 8b32c3f..ceac7fa 100644
--- a/src/depiction_targeted_preproc/pipeline_config/artifacts_mapping.py
+++ b/src/depiction_targeted_preproc/pipeline_config/artifacts_mapping.py
@@ -21,8 +21,6 @@
     # TODO
     PipelineArtifact.CALIB_HEATMAP: [
         "qc/plot_calibration_map.pdf",
-        # ->renamed into plot_test_mass_shifts.pdf
-        # "qc/plot_calibration_map_v2.pdf",
     ],
     PipelineArtifact.DEBUG: [
         "qc/plot_marker_presence_cv.pdf",
diff --git a/src/depiction_targeted_preproc/workflow/qc/plot_calibration_map_v2.py b/src/depiction_targeted_preproc/workflow/qc/plot_test_mass_shifts.py
similarity index 100%
rename from src/depiction_targeted_preproc/workflow/qc/plot_calibration_map_v2.py
rename to src/depiction_targeted_preproc/workflow/qc/plot_test_mass_shifts.py
diff --git a/src/depiction_targeted_preproc/workflow/rules/rules_qc.smk b/src/depiction_targeted_preproc/workflow/rules/rules_qc.smk
index 37dddf8..8ff6c11 100644
--- a/src/depiction_targeted_preproc/workflow/rules/rules_qc.smk
+++ b/src/depiction_targeted_preproc/workflow/rules/rules_qc.smk
@@ -106,7 +106,7 @@ rule qc_plot_test_mass_shifts:
     output:
         pdf="{sample}/qc/plot_test_mass_shifts.pdf",
     shell:
-        "python -m depiction_targeted_preproc.workflow.qc.plot_calibration_map_v2"
+        "python -m depiction_targeted_preproc.workflow.qc.plot_test_mass_shifts"
         " --input-mass-shifts {input.mass_shifts}"
         " --output-pdf {output.pdf}"