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mcc-gtrg-ucld-gmrf-colored.pruned.tre
206 lines (203 loc) · 124 KB
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mcc-gtrg-ucld-gmrf-colored.pruned.tre
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#NEXUS
begin taxa;
dimensions ntax=104;
taxlabels
'A/blackbird/Texas/24-008354-001/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-16'[&Host="Wild bird",!color=#0077bb]
'A/blackbird/Texas/24-008357-001/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-16'[&Host="Wild bird",!color=#0077bb]
'A/canada_goose/New_Mexico/24-005749-001/2024|H5N1|HA||B3.6|wild-bird|New_Mexico|2024-02-15'[&Host="Wild bird",!color=#0077bb]
'A/cat/New_Mexico/24-009116-001/2024|H5N1|HA|||domestic-mammal|New_Mexico|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/New_Mexico/24-009116-002/2024|H5N1|HA||B3.13|domestic-mammal|New_Mexico|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/New_Mexico/24-009116-004/2024|H5N1|HA||B3.13|domestic-mammal|New_Mexico|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/New_Mexico/24-009116-005/2024|H5N1|HA||B3.13|domestic-mammal|New_Mexico|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Oklahoma/24-009118-002/2024|H5N1|HA||B3.13|domestic-mammal|Oklahoma|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-008764-001/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-22'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-008764-002/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-22'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-008850-001/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-008850-002/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-20'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-009311-004/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-16'[&Host="Domestic mammal",!color=#ccbb44]
'A/cat/Texas/24-009311-006/2024|H5N1|HA||B3.13|domestic-mammal|Texas|2024-03-16'[&Host="Domestic mammal",!color=#ccbb44]
'A/cattle/Kansas/24-009497-004/2024|H5N1|HA||B3.13|cattle|Kansas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Kansas/24-009497-005/2024|H5N1|HA||B3.13|cattle|Kansas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Kansas/24-009497-006/2024|H5N1|HA||B3.13|cattle|Kansas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Kansas/24-009497-009/2024|H5N1|HA||B3.13|cattle|Kansas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-009027-001/2024|H5N1|HA||B3.13|cattle|Michigan|2024-03-24'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-009027-002/2024|H5N1|HA||B3.13|cattle|Michigan|2024-03-24'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-010071-005/2024|H5N1|HA||B3.13|cattle|Michigan|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-010071-006/2024|H5N1|HA||B3.13|cattle|Michigan|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-010071-007/2024|H5N1|HA||B3.13|cattle|Michigan|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-010071-009/2024|H5N1|HA||B3.13|cattle|Michigan|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/Michigan/24-010303-002/2024|H5N1|HA||B3.13|cattle|Michigan|2024-04-03'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-009306-003/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-009306-004/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010192-003/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010192-006/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010193-003/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010193-006/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010193-007/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/New_Mexico/24-010330-003/2024|H5N1|HA||B3.13|cattle|New_Mexico|2024-04-01'[&Host="Cattle",!color=#cc3311]
'A/cattle/North_Carolina/24-010327-002/2024|H5N1|HA||B3.13|cattle|North_Carolina|2024-04-04'[&Host="Cattle",!color=#cc3311]
'A/cattle/North_Carolina/24-010327-003/2024|H5N1|HA||B3.13|cattle|North_Carolina|2024-04-04'[&Host="Cattle",!color=#cc3311]
'A/cattle/North_Carolina/24-010327-005/2024|H5N1|HA||B3.13|cattle|North_Carolina|2024-04-04'[&Host="Cattle",!color=#cc3311]
'A/cattle/Ohio/24-009586-001/2024|H5N1|HA||B3.13|cattle|Ohio|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/Ohio/24-009586-005/2024|H5N1|HA||B3.13|cattle|Ohio|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/Ohio/24-009586-008/2024|H5N1|HA||B3.13|cattle|Ohio|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/Ohio/24-009586-010/2024|H5N1|HA||B3.13|cattle|Ohio|2024-03-29'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-008660-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-008660-002/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-008749-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009108-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009108-005/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009108-006/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009108-007/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-002/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-003/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-004/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-005/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009109-008/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009110-008/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-14'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009110-020/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-14'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009308-002/2024|H5N1|HA|||cattle|Texas|2024-03-19'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009308-003/2024|H5N1|HA|||cattle|Texas|2024-03-19'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009310-010/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-21'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-002/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-003/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-004/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-011/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009367-012/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-25'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009495-005/2024|H5N1|HA|||cattle|Texas|2024-03-21'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009495-008/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-21'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009495-012/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-21'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009776-001/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-10'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-009776-002/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-10'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-010513-003/2024|H5N1|HA||B3.13|cattle|Texas|2024-03-20'[&Host="Cattle",!color=#cc3311]
'A/cattle/Texas/24-010514-002/2024|H5N1|HA||B3.13|cattle|Texas|2024-04-03'[&Host="Cattle",!color=#cc3311]
'A/chicken/Indiana/24-005716-002/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&Host="Poultry",!color=#228833]
'A/chicken/Indiana/24-005716-003/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&Host="Poultry",!color=#228833]
'A/chicken/Indiana/24-005716-006/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&Host="Poultry",!color=#228833]
'A/chicken/Kansas/24-010482-001/2024|H5N1|HA||B3.13|poultry|Kansas|2024-04-08'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-009582-001/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-01'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-009582-002/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-01'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-009582-003/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-01'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-010308-001-300/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-06'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-010308-006-300/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-06'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-010308-007/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-06'[&Host="Poultry",!color=#228833]
'A/chicken/Michigan/24-010308-012/2024|H5N1|HA||B3.13|poultry|Michigan|2024-04-06'[&Host="Poultry",!color=#228833]
'A/chicken/Texas/24-007264-001/2024|H5N1|HA||B3.13|poultry|Texas|2024-03-07'[&Host="Poultry",!color=#228833]
'A/chicken/Texas/24-007264-003/2024|H5N1|HA||B3.13|poultry|Texas|2024-03-07'[&Host="Poultry",!color=#228833]
'A/chicken/Texas/24-009654-001/2024|H5N1|HA||B3.13|poultry|Texas|2024-04-01'[&Host="Poultry",!color=#228833]
'A/chicken/Texas/24-009654-004/2024|H5N1|HA||B3.13|poultry|Texas|2024-04-01'[&Host="Poultry",!color=#228833]
'A/grackle/Texas/24-008356-001/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-18'[&Host="Wild bird",!color=#0077bb]
'A/grackle/Texas/24-008356-003/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-18'[&Host="Wild bird",!color=#0077bb]
'A/grackle/Texas/24-008765-002/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-20'[&Host="Wild bird",!color=#0077bb]
'A/mallard/Minnesota/24-006961-018/2024|H5N1|HA||B3.6|wild-bird|Minnesota|2024-02-28'[&Host="Wild bird",!color=#0077bb]
'A/mountain_lion/Montana/24-005908-001/2024|H5N1|HA||B3.6|mammal|Montana|2024-01-30'[&Host="Wild mammal",!color=#ee7733]
'A/mute_swan/California/24-005918-001/2024|H5N1|HA||B3.6|wild-bird|California|2024-02-06'[&Host="Wild bird",!color=#0077bb]
'A/peregrine_falcon/California/24-005915-001/2024|H5N1|HA||B3.13|wild-bird|California|2024-02-14'[&Host="Wild bird",!color=#0077bb]
'A/pigeon/Texas/24-008765-001/2024|H5N1|HA||B3.13|wild-bird|Texas|2024-03-20'[&Host="Wild bird",!color=#0077bb]
'A/raccoon/New_Mexico/24-009496-002/2024|H5N1|HA||B3.13|mammal|New_Mexico|2024-03-23'[&Host="Wild mammal",!color=#ee7733]
'A/skunk/New_Mexico/24-006483-001/2024|H5N1|HA||B3.13|mammal|New_Mexico|2024-02-23'[&Host="Wild mammal",!color=#ee7733]
'A/turkey_vulture/California/24-007419-001/2024|H5N1|HA||B3.6|wild-bird|California|2024-02-20'[&Host="Wild bird",!color=#0077bb]
'EPI2873383|A/king_vulture/Arizona/23-033233-001-original/2023|H5N1|HA|2.3.4.4b|B3.6|wild-bird|Arizona|2023-10-24'[&Host="Wild bird",!color=#0077bb]
'EPI2873439|A/chicken/Oklahoma/23-033090-001-original/2023|H5N1|HA|2.3.4.4b||poultry|Oklahoma|2023-10-27'[&Host="Poultry",!color=#228833]
'EPI2899566|A/turkey/Minnesota/23-036928-001-original/2023|H5N1|HA|2.3.4.4b||poultry|Minnesota|2023-11-20'[&Host="Poultry",!color=#228833]
'EPI2906262|A/Canada_goose/Maryland/23-034924-001-original/2023|H5N1|HA|2.3.4.4b||wild-bird|Maryland|2023-11-09'[&Host="Wild bird",!color=#0077bb]
'EPI3052580|A/turkey/Wisconsin/24-000378-001-original/2024|H5N1|HA|2.3.4.4b||poultry|Wisconsin|2024-01-03'[&Host="Poultry",!color=#228833]
'EPI3052604|A/domestic_goose/California/24-000492-001-original/2024|H5N1|HA|2.3.4.4b|B3.6|poultry|California|2024-01-03'[&Host="Poultry",!color=#228833]
'EPI3171488|A/Texas/37/2024|H5N1|HA|2.3.4.4b||human|Texas|2024-03-28'[&Host="Human",!color=#44bb99]
;
end;
begin trees;
tree _1 = [&R] ('EPI2873439|A/chicken/Oklahoma/23-033090-001-original/2023|H5N1|HA|2.3.4.4b||poultry|Oklahoma|2023-10-27'[&length_range={0.003925658513178,0.6638082003354},rate=0.006043036553088479,rate_95%_HPD={0.002887994826878092,0.009250995053085504},rate_median=0.005865613883770141,height_median=0.44858148064986336,height_range={0.44858148064961156,0.44858148065008807},!color=#228833,height_95%_HPD={0.44858148064974745,0.4485814806499784},length_95%_HPD={0.04471766297432,0.4058938228255},length=0.21928781104824313,length_median=0.2094308036127,rate_range={0.0013355406813534661,0.02592972452027786},height=0.4485814806501104,Host="Poultry"]:0.44992,(((('EPI2899566|A/turkey/Minnesota/23-036928-001-original/2023|H5N1|HA|2.3.4.4b||poultry|Minnesota|2023-11-20'[&height_95%_HPD={0.3828280559920403,0.38282805599225744},length_95%_HPD={0.1145665659399,0.5006589425011},length=0.3145721035582145,length_median=0.3185346897646,rate_range={0.0017468509752513286,0.02492589830963688},height=0.382828055991983,Host="Poultry",length_range={0.01719664732943,0.7231892793396},rate=0.006154198488220491,rate_95%_HPD={0.0032687249177528153,0.009603225450906751},rate_median=0.005961660691393504,height_median=0.38282805599215,height_range={0.38282805599191017,0.3828280559923596},!color=#228833]:0.222701,(('A/chicken/Indiana/24-005716-003/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&length_95%_HPD={2.911597976345E-4,0.09381132915006},height_95%_HPD={0.12841530054639527,0.12841530054663863},length=0.03486228140908326,length_median=0.026403640265,rate_range={8.765000617718305E-4,0.0254166552657318},height=0.12841530054647454,Host="Poultry",length_range={1.142993998035E-5,0.2869982033004},rate=0.005972166309392613,rate_95%_HPD={0.002761506805093489,0.009263174426590491},rate_median=0.005819635245760258,height_median=0.12841530054652184,height_range={0.1284153005462243,0.1284153005467834},!color=#228833]:0.026018,'A/chicken/Indiana/24-005716-006/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&height_95%_HPD={0.12841530054639527,0.12841530054663863},length_95%_HPD={4.899954517208E-4,0.09704831744084},length=0.035589221580626405,length_median=0.02664757631703,rate_range={0.0014764534141227651,0.026571616205203763},height=0.12841530054647446,Host="Poultry",length_range={1.142993998035E-5,0.3014184864667},rate_95%_HPD={0.0029274339694512867,0.010170438793087266},rate=0.0064275474462579165,rate_median=0.006119781729388178,height_median=0.12841530054652184,height_range={0.1284153005462243,0.1284153005467834},!color=#228833]:0.026018)[&rate_95%_HPD={0.0029788494018012112,0.009807189830342317},length=0.06598990983534696,height_median=0.15443361633138508,height_range={0.12842673048650566,0.4145084450941807},rate=0.006239344355210017,length_median=0.05254088504248,!color=#228833,length_range={2.549675527502E-5,0.5146385301797},length_95%_HPD={9.505315864292E-4,0.1681401476767},posterior=0.970803649543807,rate_range={0.0016108613808350808,0.028744846599293335},height_95%_HPD={0.12867572243224012,0.22016563344789786},rate_median=0.005997882586667105,height=0.16262960547116806,Host="Poultry"]:0.061504,'A/chicken/Indiana/24-005716-002/2024|H5N1|HA||B3.6|poultry|Indiana|2024-02-21'[&length_range={2.529587818576E-4,0.5395101144141},rate_95%_HPD={0.0025468027273561683,0.008740211213321228},rate=0.005753914111988829,rate_median=0.005651936609969788,height_median=0.1284153005465214,height_range={0.12841530054625405,0.12841530054678651},!color=#228833,length_95%_HPD={0.007694048416104,0.2185015089822},height_95%_HPD={0.12841530054639394,0.12841530054664085},length=0.09865355532396355,length_median=0.08617468534491,rate_range={0.00118877464591035,0.023073480768271697},height=0.12841530054647468,Host="Poultry"]:0.087523)[&length_range={0.006527816006719,0.8966935157033},length_95%_HPD={0.177523522077,0.663548035351},posterior=1.0,rate_range={0.0018131646626016863,0.026054073190844206},height_95%_HPD={0.13778751471001582,0.34734691716765465},rate_median=0.006066945588738243,height=0.22833973881471342,Host="Poultry",length=0.4172916617144239,rate_95%_HPD={0.0034615962231228435,0.009728089597712297},height_median=0.2159379401992001,height_range={0.13018100492685392,0.6679254149606426},rate=0.006294423893182519,length_median=0.412832745434,!color=#228833]:0.389591)[&rate_95%_HPD={0.003006764951527082,0.009320824558188879},length=0.11343765555546804,height_median=0.6055289157372443,height_range={0.4000247033216069,0.9378416596287014},rate=0.0060409719040107205,length_median=0.09872560743664,!color=#228833,length_range={5.679137999668E-4,0.4973981115272},length_95%_HPD={0.002762796431628,0.2603245435259},posterior=0.23474565679290088,rate_range={0.0016653986885545352,0.022473476192258694},height_95%_HPD={0.4391432466157732,0.7709499010342618},rate_median=0.005857623294966414,height=0.6105460545782246,Host="Poultry"]:0.174577,((('A/mountain_lion/Montana/24-005908-001/2024|H5N1|HA||B3.6|mammal|Montana|2024-01-30'[&length_range={5.227774356839E-5,0.6409957837394},rate_95%_HPD={0.002862254268775217,0.009147755415366424},rate=0.005919237280651566,rate_median=0.005770892086800129,height_median=0.1885245901639796,height_range={0.1885245901637691,0.188524590164179},!color=#ee7733,height_95%_HPD={0.188524590163889,0.18852459016406842},length_95%_HPD={0.006179881966546,0.3590966345082},length=0.15675554598505753,length_median=0.1403577454842,rate_range={0.0014036173872219182,0.019139324497872118},height=0.18852459016397913,Host="Wild 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bird",rate_95%_HPD={0.0027327104504419925,0.009046936228160092},length=0.07840342967830634,height_median=0.36038567542099265,height_range={0.18539282945616975,0.7469078110990319},rate=0.00582259046215577,length_median=0.0606839188794,!color=#0077bb]:0.074399,'EPI3052604|A/domestic_goose/California/24-000492-001-original/2024|H5N1|HA|2.3.4.4b|B3.6|poultry|California|2024-01-03'[&length_95%_HPD={0.03815974491732,0.3424559128152},height_95%_HPD={0.2622950819671699,0.26229508196742035},length=0.16705927839970158,length_median=0.1482556746903,rate_range={0.0018692546751358332,0.03066269448473336},height=0.2622950819673967,Host="Poultry",length_range={0.006773078305237,0.5637180041338},rate=0.006648358094992071,rate_95%_HPD={0.003322604446239969,0.010518435282061565},rate_median=0.006301687949934994,height_median=0.262295081967296,height_range={0.2622950819670491,0.26229508196754114},!color=#228833]:0.172489)[&rate_95%_HPD={0.0032060508485156573,0.00968491374840719},length=0.2520598287953344,height_median=0.4347842146305303,height_range={0.2764242642743797,0.826013086101153},rate=0.006283997440583129,length_median=0.2422468334179,length_range={0.006779883302327,0.7383560607119},length_95%_HPD={0.07051873698208,0.4564737969972},posterior=1.0,rate_range={0.0016448259821986284,0.02434010391987247},height_95%_HPD={0.31058665009004605,0.6291609816931767},rate_median=0.006048443308030575,height=0.453263265556515]:0.354949)[&length_range={1.328439712377E-4,0.1075063497818},length_95%_HPD={1.328439712377E-4,0.1021761642319},posterior=0.0010748656417947757,rate_range={0.003310924095942162,0.011270427279840468},height_95%_HPD={0.7211596813952563,0.9509780673750154},rate_median=0.00586394618742564,height=0.7984862444147247,Host="Poultry",length=0.03371689460897747,rate_95%_HPD={0.003310924095942162,0.00913597049398431},height_median=0.7897333241620155,height_range={0.5702551686837638,0.9509780673750154},rate=0.00581593794887302,length_median=0.02556359543386,!color=#228833]:-0.121899,'EPI2873383|A/king_vulture/Arizona/23-033233-001-original/2023|H5N1|HA|2.3.4.4b|B3.6|wild-bird|Arizona|2023-10-24'[&length_95%_HPD={0.01063648537449,0.3501914408641},height_95%_HPD={0.4568006587318205,0.4568006587320501},length=0.17292204573740577,length_median=0.1617705086131,rate_range={0.0010047627717882225,0.02180236634495744},height=0.45680065873218756,Host="Wild bird",length_range={1.202446116632E-4,0.6292405202012},rate=0.005864082327173937,rate_95%_HPD={0.0027988978830028504,0.008989305865101096},rate_median=0.005735737623206485,height_median=0.456800658731936,height_range={0.4568006587316997,0.4568006587321687},!color=#0077bb]:0.211034)[&rate_95%_HPD={0.0033792026632012404,0.0045273606739039685},length=0.06901571409768,height_median=0.6678347493763966,height_range={0.6576062364811508,0.6780632622716425},rate=0.003953281668552604,length_median=0.06901571409768,!color=#0077bb,length_range={0.04018147341432,0.09784995478104},posterior=4.9993750781152357E-5,length_95%_HPD={0.04018147341432,0.09784995478104},rate_range={0.0033792026632012404,0.0045273606739039685},height_95%_HPD={0.6576062364811508,0.6780632622716425},rate_median=0.003953281668552604,height=0.6678347493763966,Host="Wild bird"]:0.230667);
end;
begin figtree;
set appearance.backgroundColorAttribute="Default";
set appearance.backgroundColour=#ffffff;
set appearance.branchColorAttribute="User selection";
set appearance.branchColorGradient=false;
set appearance.branchLineWidth=2.0;
set appearance.branchMinLineWidth=0.0;
set appearance.branchWidthAttribute="Fixed";
set appearance.foregroundColour=#000000;
set appearance.hilightingGradient=false;
set appearance.selectionColour=#2d3680;
set branchLabels.colorAttribute="User selection";
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontName="Arial";
set branchLabels.fontSize=8;
set branchLabels.fontStyle=0;
set branchLabels.isShown=false;
set branchLabels.significantDigits=4;
set layout.expansion=188;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set legend.attribute=null;
set legend.fontSize=10.0;
set legend.isShown=false;
set legend.significantDigits=4;
set nodeBars.barWidth=4.0;
set nodeBars.displayAttribute=null;
set nodeBars.isShown=false;
set nodeLabels.colorAttribute="User selection";
set nodeLabels.displayAttribute="Node ages";
set nodeLabels.fontName="Arial";
set nodeLabels.fontSize=8;
set nodeLabels.fontStyle=0;
set nodeLabels.isShown=false;
set nodeLabels.significantDigits=4;
set nodeShapeExternal.colourAttribute=null;
set nodeShapeExternal.isShown=false;
set nodeShapeExternal.minSize=10.0;
set nodeShapeExternal.scaleType=Width;
set nodeShapeExternal.shapeType=Circle;
set nodeShapeExternal.size=4.0;
set nodeShapeExternal.sizeAttribute=null;
set nodeShapeInternal.colourAttribute=null;
set nodeShapeInternal.isShown=false;
set nodeShapeInternal.minSize=10.0;
set nodeShapeInternal.scaleType=Width;
set nodeShapeInternal.shapeType=Circle;
set nodeShapeInternal.size=4.0;
set nodeShapeInternal.sizeAttribute=null;
set polarLayout.alignTipLabels=false;
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=true;
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=false;
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=100;
set scale.offsetAge=2024.2677595628415;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=false;
set scaleAxis.automaticScale=true;
set scaleAxis.fontSize=14.0;
set scaleAxis.isShown=true;
set scaleAxis.lineWidth=2.0;
set scaleAxis.majorTicks=0.1;
set scaleAxis.minorTicks=0.05;
set scaleAxis.origin=0.0;
set scaleAxis.reverseAxis=true;
set scaleAxis.showGrid=true;
set scaleBar.automaticScale=true;
set scaleBar.fontSize=16.0;
set scaleBar.isShown=false;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.08;
set tipLabels.colorAttribute="User selection";
set tipLabels.displayAttribute="Names";
set tipLabels.fontName="Arial";
set tipLabels.fontSize=14;
set tipLabels.fontStyle=0;
set tipLabels.isShown=true;
set tipLabels.significantDigits=4;
set trees.order=true;
set trees.orderType="increasing";
set trees.rooting=true;
set trees.rootingType="Midpoint";
set trees.transform=false;
set trees.transformType="cladogram";
end;