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all_sample_amino_acids.txt
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all_sample_amino_acids.txt
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method sample locus position reference alternative quality depth map_quality allele_frequency aa_position reference_codon alternative_codon reference_aa alternative_aa aa_changing
LoFreq 24-012590-002_CATTLE_ARS-study MP 683 G A 490 2999 NA 0.020674 228 GGT GAT G D YES
LoFreq 24-012590-002_CATTLE_ARS-study NP 402 T C 59 514 NA 0.013619 134 ACT ACC T T NO
LoFreq 24-012590-002_CATTLE_ARS-study NP 1294 A G 6172 513 NA 0.45809 432 AAC GAC N D YES
LoFreq 24-012590-002_CATTLE_ARS-study NS 664 A G 1339 2075 NA 0.064578 222 ATG GTG M V YES
LoFreq 24-012590-002_CATTLE_ARS-study PA 1313 T C 1820 80 NA 0.7875 438 ATT ACT I T YES
GATK4 24-012590-002_CATTLE_ARS-study PA 1313 T C 1575.04 80 60 1 438 ATT ACT I T YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 143 C A 375 15 NA 0.933333 48 TCA TAA S * YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 145 T C 336 15 NA 0.933333 49 TAC CAC Y H YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 147 C G 339 15 NA 0.933333 49 TAC TAG Y * YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 149 G A 317 15 NA 0.933333 50 AGG AAG R K YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 150 G C 338 16 NA 0.9375 50 AGG AGC R S YES
LoFreq 24-012590-002_CATTLE_ARS-study PB1 657 G A 66 29 NA 0.103448 219 AAG AAA K K NO
LoFreq 24-012590-002_CATTLE_ARS-study PB1 2086 G A 310 45 NA 0.288889 696 GTG ATG V M YES
GATK4 24-012590-002_CATTLE_ARS-study PB1 150 G C 1290.04 34 60 1 50 AGG AGC R S YES
LoFreq 24-012590-002_CATTLE_ARS-study PB2 1235 A G 841 43 NA 0.674419 412 AAG AGG K R YES
GATK4 24-012590-002_CATTLE_ARS-study PB2 1235 A G 461.04 43 60 1 412 AAG AGG K R YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 238 G A 49314 11036 NA 0.405491 80 GTC ATC V I YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 307 C A 154 11783 NA 0.005092 103 CTG ATG L M YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 389 T C 76 11948 NA 0.002929 130 CTC CCC L P YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 569 A G 69 12583 NA 0.002225 190 GAG GGG E G YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 649 A G 72 12077 NA 0.003229 217 AGG GGG R G YES
LoFreq 24-012590-023_CATTLE_ARS-study MP 965 A G 718 3005 NA 0.024293 322 CAA CGA Q R YES
LoFreq 24-012590-023_CATTLE_ARS-study NP 270 G A 152 7846 NA 0.00548 90 AAG AAA K K NO
LoFreq 24-012590-023_CATTLE_ARS-study NP 279 A G 94 7433 NA 0.003767 93 GGA GGG G G NO
LoFreq 24-012590-023_CATTLE_ARS-study NP 504 A G 68 7712 NA 0.003112 168 CAA CAG Q Q NO
LoFreq 24-012590-023_CATTLE_ARS-study NP 909 T C 76 7936 NA 0.003906 303 CCT CCC P P NO
LoFreq 24-012590-023_CATTLE_ARS-study NP 944 T C 107 7994 NA 0.005629 315 CTC CCC L P YES
LoFreq 24-012590-023_CATTLE_ARS-study NP 1067 G A 78 7949 NA 0.0039 356 GGA GAA G E YES
LoFreq 24-012590-023_CATTLE_ARS-study NP 1068 A G 86 8009 NA 0.003746 356 GGA GGG G G NO
LoFreq 24-012590-023_CATTLE_ARS-study NP 1130 G T 172 8527 NA 0.004926 377 AGT ATT S I YES
LoFreq 24-012590-023_CATTLE_ARS-study NP 1484 A G 124 2056 NA 0.009241 495 GAG GGG E G YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 213 A G 102 12754 NA 0.002823 71 GAA GAG E E NO
LoFreq 24-012590-023_CATTLE_ARS-study NS 247 T C 177 13155 NA 0.004029 83 TCT CCT S P YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 255 T C 132 13077 NA 0.002982 85 CCT CCC P P NO
LoFreq 24-012590-023_CATTLE_ARS-study NS 295 T C 84 13959 NA 0.002507 99 TCA CCA S P YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 302 A G 86 13921 NA 0.010344 101 GAC GGC D G YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 314 T C 65 14384 NA 0.003337 105 CTC CCC L P YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 340 T C 108 13307 NA 0.004359 114 TCC CCC S P YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 412 T C 74 14008 NA 0.002213 138 TTC CTC F L YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 447 T C 93 13710 NA 0.003355 149 GCT GCC A A NO
LoFreq 24-012590-023_CATTLE_ARS-study NS 492 T C 116 14047 NA 0.003702 164 CCT CCC P P NO
LoFreq 24-012590-023_CATTLE_ARS-study NS 515 A G 68 13143 NA 0.002739 172 GAG GGG E G YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 536 G A 369 12795 NA 0.006487 179 GGG GAG G E YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 610 A G 81 11128 NA 0.002786 204 AGA GGA R G YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 631 A G 144 10856 NA 0.004145 211 AGA GGA R G YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 664 A G 49314 10438 NA 0.350834 222 ATG GTG M V YES
LoFreq 24-012590-023_CATTLE_ARS-study NS 801 A G 157 4891 NA 0.005725 267 GGA GGG G G NO
LoFreq 24-012590-023_CATTLE_ARS-study NS 805 A G 91 4629 NA 0.004537 269 AGA GGA R G YES
LoFreq 24-012590-023_CATTLE_ARS-study PA 240 A G 155 3734 NA 0.008302 80 GAA GAG E E NO
LoFreq 24-012590-023_CATTLE_ARS-study PA 293 C T 142 4099 NA 0.006831 98 ACA ATA T I YES
LoFreq 24-012590-023_CATTLE_ARS-study PA 466 G C 243 2468 NA 0.02107 156 GCC CCC A P YES
LoFreq 24-012590-023_CATTLE_ARS-study PA 1820 T C 83 3117 NA 0.008021 607 ATG ACG M T YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 143 C A 42651 1525 NA 0.990164 48 TCA TAA S * YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 145 T C 41560 1525 NA 0.988852 49 TAC CAC Y H YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 147 C G 41814 1525 NA 0.990164 49 TAC TAG Y * YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 149 G A 41500 1525 NA 0.987541 50 AGG AAG R K YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 150 G C 41959 1529 NA 0.992806 50 AGG AGC R S YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 513 T C 69 3497 NA 0.004289 171 CCT CCC P P NO
LoFreq 24-012590-023_CATTLE_ARS-study PB1 700 A G 66 3801 NA 0.004736 234 AGA GGA R G YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 1119 C A 76 3983 NA 0.006026 373 ACC ACA T T NO
LoFreq 24-012590-023_CATTLE_ARS-study PB1 2086 G A 41574 4085 NA 0.405875 696 GTG ATG V M YES
LoFreq 24-012590-023_CATTLE_ARS-study PB1 2147 T C 75 3786 NA 0.005547 716 TTC TCC F S YES
GATK4 24-012590-023_CATTLE_ARS-study PB1 150 G C 56162.04 1299 60 1 50 AGG AGC R S YES
LoFreq 24-012590-023_CATTLE_ARS-study PB2 1570 A G 373 3404 NA 0.025852 524 ACA GCA T A YES
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 294 G A 36731 3801 NA 0.38332 98 CGG CGA R R NO
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 1118 A G 129 4264 NA 0.007739 373 AAT AGT N S YES
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 1482 G A 147 4422 NA 0.008367 494 ATG ATA M I YES
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 1617 A G 39311 3743 NA 0.406359 539 GCA GCG A A NO
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 1682 T C 67 1750 NA 0.007429 561 TTA TCA L S YES
LoFreq 24-012590-023_CATTLE_ARS-study HA_H5 1691 G A 76 1447 NA 0.008984 564 AGA AAA R K YES
LoFreq 24-012590-023_CATTLE_ARS-study NA_N1 711 C T 114 5485 NA 0.005287 237 TCC TCT S S NO
LoFreq 24-012590-023_CATTLE_ARS-study NA_N1 1081 A G 74 5036 NA 0.003971 361 AGA GGA R G YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 157 T C 80 10843 NA 0.003505 53 TCA CCA S P YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 238 G A 4950 12038 NA 0.032314 80 GTC ATC V I YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 280 G A 3043 12781 NA 0.024177 94 GAC AAC D N YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 304 A T 303 12927 NA 0.007968 102 AAA TAA K * YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 358 T C 287 13536 NA 0.005762 120 TCA CCA S P YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 395 A G 88 13488 NA 0.003855 132 TAC TGC Y C YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 466 G A 615 13612 NA 0.007861 156 GAT AAT D N YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 505 A G 100 13989 NA 0.003288 169 ACC GCC T A YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 569 A G 90 13882 NA 0.002377 190 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 590 A G 65 13211 NA 0.002574 197 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 603 A G 96 13387 NA 0.003063 201 GAA GAG E E NO
LoFreq 24-012590-024_CATTLE_ARS-study MP 611 A G 641 13540 NA 0.007755 204 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 673 T C 95 13412 NA 0.002908 225 TCC CCC S P YES
LoFreq 24-012590-024_CATTLE_ARS-study MP 735 A G 65 12475 NA 0.002725 245 GGA GGG G G NO
LoFreq 24-012590-024_CATTLE_ARS-study MP 816 T C 81 11519 NA 0.003125 272 TCT TCC S S NO
LoFreq 24-012590-024_CATTLE_ARS-study MP 825 T C 211 11311 NA 0.004863 275 CCT CCC P P NO
LoFreq 24-012590-024_CATTLE_ARS-study MP 948 A G 76 4130 NA 0.004358 316 TGA TGG * W YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 250 A C 129 6648 NA 0.010229 84 AGT CGT S R YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 411 G A 3027 6845 NA 0.036523 137 ATG ATA M I YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 461 T C 419 6511 NA 0.010444 154 CTT CCT L P YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 767 T C 893 6278 NA 0.020548 256 CTC CCC L P YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 813 T C 969 6228 NA 0.018626 271 GCT GCC A A NO
LoFreq 24-012590-024_CATTLE_ARS-study NP 925 A G 176 6936 NA 0.010669 309 AAC GAC N D YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 993 G A 1881 6296 NA 0.028907 331 ATG ATA M I YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 1056 A G 75 6354 NA 0.003462 352 GTA GTG V V NO
LoFreq 24-012590-024_CATTLE_ARS-study NP 1114 G A 2219 6948 NA 0.030081 372 GAG AAG E K YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 1391 T C 65 4998 NA 0.003201 464 TTC TCC F S YES
LoFreq 24-012590-024_CATTLE_ARS-study NP 1491 C T 342 1529 NA 0.022237 497 GAC GAT D D NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 158 A G 385 10179 NA 0.00727 53 GAC GGC D G YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 184 A G 251 10556 NA 0.005116 62 AAG GAG K E YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 185 A G 195 10478 NA 0.004772 62 AAG AGG K R YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 209 A G 79 11264 NA 0.002575 70 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 224 A G 74 11461 NA 0.00253 75 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 247 T C 68 11822 NA 0.002961 83 TCT CCT S P YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 252 G A 1687 12000 NA 0.015167 84 GTG GTA V V NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 258 T C 104 12017 NA 0.002663 86 GCT GCC A A NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 314 T C 78 12799 NA 0.003985 105 CTC CCC L P YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 340 T C 140 11864 NA 0.004636 114 TCC CCC S P YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 447 T C 161 12152 NA 0.004361 149 GCT GCC A A NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 462 A G 159 12030 NA 0.00399 154 GGA GGG G G NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 508 A G 105 12472 NA 0.003849 170 ACT GCT T A YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 631 A G 94 9839 NA 0.003354 211 AGA GGA R G YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 636 T C 71 9935 NA 0.002718 212 CCT CCC P P NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 641 T C 175 9914 NA 0.006052 214 CTC CCC L P YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 645 T C 136 9725 NA 0.004936 215 CCT CCC P P NO
LoFreq 24-012590-024_CATTLE_ARS-study NS 764 A G 940 7028 NA 0.015652 255 AAC AGC N S YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 793 T C 164 4800 NA 0.006875 265 TGA CGA * R YES
LoFreq 24-012590-024_CATTLE_ARS-study NS 801 A G 75 4276 NA 0.003976 267 GGA GGG G G NO
LoFreq 24-012590-024_CATTLE_ARS-study PA 188 T G 21630 3254 NA 0.284573 63 GTA GGA V G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 251 G A 530 2419 NA 0.02439 84 CGA CAA R Q YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 276 T C 1804 2321 NA 0.053856 92 AAT AAC N N NO
LoFreq 24-012590-024_CATTLE_ARS-study PA 871 A G 83 2501 NA 0.006397 291 AGC GGC S G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 899 A G 66 2541 NA 0.006297 300 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1145 A G 83 2439 NA 0.00697 382 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1190 A G 121 2476 NA 0.007674 397 GAA GGA E G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1375 A G 973 2880 NA 0.029514 459 ATA GTA I V YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1380 G A 545 2901 NA 0.021027 460 ATG ATA M I YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1744 A G 284 3040 NA 0.013487 582 AGG GGG R G YES
LoFreq 24-012590-024_CATTLE_ARS-study PA 1917 A G 496 4250 NA 0.029412 639 ACA ACG T T NO
LoFreq 24-012590-024_CATTLE_ARS-study PA 1937 T C 100 4527 NA 0.00486 646 TTC TCC F S YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 143 C A 12779 458 NA 0.991266 48 TCA TAA S * YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 145 T C 12416 458 NA 0.989083 49 TAC CAC Y H YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 147 C G 12409 458 NA 0.989083 49 TAC TAG Y * YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 149 G A 12393 458 NA 0.989083 50 AGG AAG R K YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 150 G C 12422 458 NA 0.991266 50 AGG AGC R S YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 636 A G 69 1066 NA 0.011257 212 GAA GAG E E NO
LoFreq 24-012590-024_CATTLE_ARS-study PB1 1755 A G 1219 1560 NA 0.05641 585 GGA GGG G G NO
LoFreq 24-012590-024_CATTLE_ARS-study PB1 2059 C T 211 2101 NA 0.013803 687 CCT TCT P S YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 2125 A T 241 1564 NA 0.023657 709 ATA TTA I L YES
LoFreq 24-012590-024_CATTLE_ARS-study PB1 2157 T C 449 4206 NA 0.014741 719 GGT GGC G G NO
LoFreq 24-012590-024_CATTLE_ARS-study PB1 2232 T C 73 4375 NA 0.004114 744 GTT GTC V V NO
LoFreq 24-012590-024_CATTLE_ARS-study PB1 2266 A G 115 3241 NA 0.005862 756 AGA GGA R G YES
GATK4 24-012590-024_CATTLE_ARS-study PB1 150 G C 21574.04 510 60 1 50 AGG AGC R S YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 299 A G 539 2865 NA 0.018848 100 AAT AGT N S YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 396 T C 167 3041 NA 0.008879 132 CCT CCC P P NO
LoFreq 24-012590-024_CATTLE_ARS-study PB2 458 A G 69 2798 NA 0.005718 153 GAC GGC D G YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 544 C T 313 2795 NA 0.016458 182 CAA TAA Q * YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 796 A G 193 3019 NA 0.016231 266 ATA GTA I V YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 883 G A 620 2963 NA 0.022612 295 GTA ATA V I YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1286 A C 783 2910 NA 0.025773 429 AAT ACT N T YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1540 T C 87 2737 NA 0.009134 514 TCA CCA S P YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1546 G A 474 2746 NA 0.020757 516 GAA AAA E K YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1845 A G 648 3221 NA 0.025768 615 ATA ATG I M YES
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1857 C T 455 3217 NA 0.018029 619 CTC CTT L L NO
LoFreq 24-012590-024_CATTLE_ARS-study PB2 1876 C A 98 3145 NA 0.006677 626 CCG ACG P T YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 311 A G 102 4071 NA 0.006878 104 GAC GGC D G YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 628 C T 563 4110 NA 0.018248 210 CCA TCA P S YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 711 G A 272 4043 NA 0.011872 237 GGG GGA G G NO
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 763 A G 1853 4041 NA 0.03316 255 ATC GTC I V YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 1027 A G 90 4083 NA 0.006368 343 AGA GGA R G YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 1056 A G 242 4156 NA 0.013234 352 GCA GCG A A NO
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 1135 T C 106 4480 NA 0.00558 379 TAC CAC Y H YES
LoFreq 24-012590-024_CATTLE_ARS-study HA_H5 1253 T C 1030 4609 NA 0.025385 418 TTA TCA L S YES
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 55 A G 38080 1635 NA 0.999388 19 ATA GTA I V YES
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 487 G A 66 3262 NA 0.005212 163 GTG ATG V M YES
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 608 T C 254 3251 NA 0.011074 203 GTG GCG V A YES
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 1041 A G 76 2928 NA 0.006831 347 AAA AAG K K NO
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 1115 A G 78 2968 NA 0.005728 372 GAG GGG E G YES
LoFreq 24-012590-024_CATTLE_ARS-study NA_N1 1240 G A 3720 2602 NA 0.091852 414 GGA AGA G R YES
GATK4 24-012590-024_CATTLE_ARS-study NA_N1 55 A G 31982.04 961 60 1 19 ATA GTA I V YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 155 T C 111 9664 NA 0.005381 52 CTG CCG L P YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 185 T C 2534 9766 NA 0.024268 62 TTT TCT F S YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 339 A G 181 12166 NA 0.004192 113 AAA AAG K K NO
LoFreq 24-012590-026_CATTLE_ARS-study MP 526 G A 5431 13198 NA 0.036672 176 GAA AAA E K YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 554 C T 329 13097 NA 0.006185 185 ACA ATA T I YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 590 A G 218 12260 NA 0.004323 197 GAG GGG E G YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 603 A G 184 12421 NA 0.004025 201 GAA GAG E E NO
LoFreq 24-012590-026_CATTLE_ARS-study MP 627 T C 1405 13004 NA 0.013534 209 GCT GCC A A NO
LoFreq 24-012590-026_CATTLE_ARS-study MP 673 T C 2202 12391 NA 0.017593 225 TCC CCC S P YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 703 G A 104 11593 NA 0.003968 235 GAA AAA E K YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 708 T C 1740 11471 NA 0.024671 236 AAT AAC N N NO
LoFreq 24-012590-026_CATTLE_ARS-study MP 735 A G 98 11546 NA 0.003378 245 GGA GGG G G NO
LoFreq 24-012590-026_CATTLE_ARS-study MP 779 A G 188 11277 NA 0.005232 260 AAG AGG K R YES
LoFreq 24-012590-026_CATTLE_ARS-study MP 881 A G 84 9795 NA 0.003675 294 TAC TGC Y C YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 405 C T 1449 6852 NA 0.022183 135 CAC CAT H H NO
LoFreq 24-012590-026_CATTLE_ARS-study NP 434 A T 84 6750 NA 0.004296 145 GAT GTT D V YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 707 G A 2577 6134 NA 0.037496 236 CGA CAA R Q YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 733 A G 363 5989 NA 0.009184 245 AGC GGC S G YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 760 G A 876 6300 NA 0.015714 254 GAA AAA E K YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 775 C T 280 6195 NA 0.008232 259 CTC TTC L F YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 1030 T C 150 6303 NA 0.005553 344 TCA CCA S P YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 1035 C A 658 6179 NA 0.014727 345 AGC AGA S R YES
LoFreq 24-012590-026_CATTLE_ARS-study NP 1149 C T 36668 6792 NA 0.244847 383 AGC AGT S S NO
LoFreq 24-012590-026_CATTLE_ARS-study NP 1222 G A 977 6192 NA 0.021479 408 GTA ATA V I YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 142 A G 270 10186 NA 0.007069 48 AGC GGC S G YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 184 A G 1278 10941 NA 0.013344 62 AAG GAG K E YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 214 G A 136 11819 NA 0.003554 72 GAA AAA E K YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 224 A G 64 11822 NA 0.002453 75 GAG GGG E G YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 255 T C 191 12119 NA 0.004043 85 CCT CCC P P NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 262 C T 98 12592 NA 0.003097 88 CGC TGC R C YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 311 T C 1443 13335 NA 0.013048 104 ATG ACG M T YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 314 T C 99 13548 NA 0.004281 105 CTC CCC L P YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 323 A G 130 13223 NA 0.004689 108 AAG AGG K R YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 340 T C 1175 12552 NA 0.014101 114 TCC CCC S P YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 412 T C 205 13221 NA 0.003706 138 TTC CTC F L YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 447 T C 144 12932 NA 0.003944 149 GCT GCC A A NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 492 T C 100 13255 NA 0.003697 164 CCT CCC P P NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 569 A G 173 11707 NA 0.003929 190 AAC AGC N S YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 636 T C 202 10436 NA 0.004791 212 CCT CCC P P NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 664 A G 1754 9793 NA 0.029511 222 ATG GTG M V YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 668 A G 69 9853 NA 0.003045 223 GAG GGG E G YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 695 G A 1424 9399 NA 0.018832 232 AGA AAA R K YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 701 A G 109 9299 NA 0.004302 234 AAG AGG K R YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 740 A G 67 8149 NA 0.003313 247 CAC CGC H R YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 755 G A 322 7547 NA 0.008215 252 TGA TAA * * NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 757 A G 78 7531 NA 0.003452 253 ACA GCA T A YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 788 C T 1625 5579 NA 0.027424 263 ACT ATT T I YES
LoFreq 24-012590-026_CATTLE_ARS-study NS 801 A G 129 4497 NA 0.005337 267 GGA GGG G G NO
LoFreq 24-012590-026_CATTLE_ARS-study NS 827 C T 64 2972 NA 0.005047 276 TCA TTA S L YES
LoFreq 24-012590-026_CATTLE_ARS-study PA 390 C A 163 504 NA 0.039683 130 TAC TAA Y * YES
LoFreq 24-012590-026_CATTLE_ARS-study PA 662 C T 1052 491 NA 0.120163 221 CCG CTG P L YES
LoFreq 24-012590-026_CATTLE_ARS-study PA 1793 C A 490 7600 NA 0.011842 598 GCC GAC A D YES
LoFreq 24-012590-026_CATTLE_ARS-study PA 1866 A G 72 8563 NA 0.00327 622 GGA GGG G G NO
LoFreq 24-012590-026_CATTLE_ARS-study PA 1926 A G 92 8448 NA 0.003433 642 GCA GCG A A NO
LoFreq 24-012590-026_CATTLE_ARS-study PA 2021 A G 78 8277 NA 0.003262 674 GAC GGC D G YES
LoFreq 24-012590-026_CATTLE_ARS-study PA 2058 A G 1544 8078 NA 0.02414 686 CTA CTG L L NO
LoFreq 24-012590-026_CATTLE_ARS-study PB1 143 C A 31151 1117 NA 0.988362 48 TCA TAA S * YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 145 T C 30314 1117 NA 0.986571 49 TAC CAC Y H YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 147 C G 30450 1117 NA 0.988362 49 TAC TAG Y * YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 149 G A 30536 1117 NA 0.989257 50 AGG AAG R K YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 150 G C 30525 1121 NA 0.991079 50 AGG AGC R S YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 587 A G 814 151 NA 0.490066 196 GAG GGG E G YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 919 C A 73 81 NA 0.061728 307 CAC AAC H N YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 1235 A G 130 95 NA 0.094737 412 GAT GGT D G YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 1668 T C 186 92 NA 0.097826 556 CAT CAC H H NO
LoFreq 24-012590-026_CATTLE_ARS-study PB1 2086 G A 94 2450 NA 0.008163 696 GTG ATG V M YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 2103 A G 96 2363 NA 0.007194 701 TGA TGG * W YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 2106 A C 666 2441 NA 0.029906 702 AAA AAC K N YES
LoFreq 24-012590-026_CATTLE_ARS-study PB1 2250 T C 104 2669 NA 0.019483 750 GAT GAC D D NO
GATK4 24-012590-026_CATTLE_ARS-study PB1 150 G C 45341.04 1107 60 1 50 AGG AGC R S YES
LoFreq 24-012590-026_CATTLE_ARS-study PB2 177 A G 66 867 NA 0.013841 59 GCA GCG A A NO
LoFreq 24-012590-026_CATTLE_ARS-study PB2 471 A G 71 562 NA 0.016014 157 AAA AAG K K NO
LoFreq 24-012590-026_CATTLE_ARS-study PB2 647 G A 3942 578 NA 0.292388 216 AGG AAG R K YES
LoFreq 24-012590-026_CATTLE_ARS-study PB2 1534 C T 78 730 NA 0.013699 512 CTA TTA L L NO
LoFreq 24-012590-026_CATTLE_ARS-study HA_H5 302 C T 110 2231 NA 0.009861 101 CCA CTA P L YES
LoFreq 24-012590-026_CATTLE_ARS-study HA_H5 400 C T 1122 2430 NA 0.040329 134 CCC TCC P S YES
LoFreq 24-012590-026_CATTLE_ARS-study HA_H5 1164 G A 1092 3172 NA 0.032787 388 AAG AAA K K NO
LoFreq 24-012590-030_CATTLE_ARS-study MP 414 G A 73 2672 NA 0.005614 138 GTG GTA V V NO
LoFreq 24-012590-030_CATTLE_ARS-study MP 455 A G 136 2700 NA 0.007778 152 GAA GGA E G YES
LoFreq 24-012590-030_CATTLE_ARS-study MP 718 T C 443 2450 NA 0.028163 240 TAC CAC Y H YES
LoFreq 24-012590-030_CATTLE_ARS-study NP 282 T C 434 1171 NA 0.029889 94 GGT GGC G G NO
LoFreq 24-012590-030_CATTLE_ARS-study NP 535 G A 94 1189 NA 0.013457 179 GCT ACT A T YES
LoFreq 24-012590-030_CATTLE_ARS-study NP 565 A G 1731 1262 NA 0.087956 189 ATG GTG M V YES
LoFreq 24-012590-030_CATTLE_ARS-study NP 1149 C T 761 1333 NA 0.047262 383 AGC AGT S S NO
LoFreq 24-012590-030_CATTLE_ARS-study NS 410 T C 1742 3749 NA 0.053348 137 ATC ACC I T YES
LoFreq 24-012590-030_CATTLE_ARS-study NS 573 A G 2137 3274 NA 0.049786 191 ACA ACG T T NO
LoFreq 24-012590-030_CATTLE_ARS-study NS 664 A G 1702 2945 NA 0.063158 222 ATG GTG M V YES
LoFreq 24-012590-030_CATTLE_ARS-study NS 819 T C 88 1287 NA 0.034965 273 TTT TTC F F NO
LoFreq 24-012590-030_CATTLE_ARS-study PB1 143 C A 860 30 NA 1 48 TCA TAA S * YES
LoFreq 24-012590-030_CATTLE_ARS-study PB1 145 T C 860 30 NA 1 49 TAC CAC Y H YES
LoFreq 24-012590-030_CATTLE_ARS-study PB1 147 C G 860 30 NA 1 49 TAC TAG Y * YES
LoFreq 24-012590-030_CATTLE_ARS-study PB1 149 G A 845 30 NA 1 50 AGG AAG R K YES
LoFreq 24-012590-030_CATTLE_ARS-study PB1 150 G C 827 30 NA 1 50 AGG AGC R S YES
LoFreq 24-012590-030_CATTLE_ARS-study PB1 2086 G A 1822 90 NA 0.711111 696 GTG ATG V M YES
GATK4 24-012590-030_CATTLE_ARS-study PB1 150 G C 2466.04 58 60 1 50 AGG AGC R S YES
GATK4 24-012590-030_CATTLE_ARS-study PB1 2086 G A 1347.04 91 60 1 696 GTG ATG V M YES
LoFreq 24-012590-030_CATTLE_ARS-study PB2 1202 C T 1508 377 NA 0.193634 401 GCC GTC A V YES
LoFreq 24-012590-030_CATTLE_ARS-study PB2 1632 G A 1365 341 NA 0.190616 544 TCG TCA S S NO
LoFreq 24-012590-030_CATTLE_ARS-study NA_N1 1141 A G 490 194 NA 0.134021 381 ACT GCT T A YES
LoFreq 24-012590-038_CATTLE_ARS-study MP 239 T C 243 4803 NA 0.008536 80 GTC GCC V A YES
LoFreq 24-012590-038_CATTLE_ARS-study MP 635 T C 49314 4912 NA 0.998982 212 ATG ACG M T YES
LoFreq 24-012590-038_CATTLE_ARS-study MP 895 T C 1348 3675 NA 0.036735 299 TGA CGA * R YES
GATK4 24-012590-038_CATTLE_ARS-study MP 635 T C 130498.04 3796 60 1 212 ATG ACG M T YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 163 A G 148 7751 NA 0.005677 55 AGG GGG R G YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 393 T C 2903 9535 NA 0.027373 131 GCT GCC A A NO
LoFreq 24-012590-038_CATTLE_ARS-study NP 407 T C 503 9450 NA 0.009524 136 TTG TCG L S YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 504 A G 201 8678 NA 0.005646 168 CAA CAG Q Q NO
LoFreq 24-012590-038_CATTLE_ARS-study NP 671 A G 99 8282 NA 0.004468 224 AAC AGC N S YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 701 C T 2350 8505 NA 0.025867 234 GCA GTA A V YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 733 A G 2716 8297 NA 0.028323 245 AGC GGC S G YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 885 A G 115 8755 NA 0.00434 295 GGA GGG G G NO
LoFreq 24-012590-038_CATTLE_ARS-study NP 1115 A G 421 9500 NA 0.008526 372 GAG GGG E G YES
LoFreq 24-012590-038_CATTLE_ARS-study NP 1427 T C 86 5115 NA 0.004106 476 GTG GCG V A YES
LoFreq 24-012590-038_CATTLE_ARS-study NS 247 T C 97 11285 NA 0.003279 83 TCT CCT S P YES
LoFreq 24-012590-038_CATTLE_ARS-study NS 255 T C 72 11201 NA 0.0025 85 CCT CCC P P NO
LoFreq 24-012590-038_CATTLE_ARS-study NS 295 T C 507 12127 NA 0.007339 99 TCA CCA S P YES
LoFreq 24-012590-038_CATTLE_ARS-study NS 447 T C 74 11558 NA 0.003028 149 GCT GCC A A NO
LoFreq 24-012590-038_CATTLE_ARS-study NS 631 A G 81 9506 NA 0.003261 211 AGA GGA R G YES
LoFreq 24-012590-038_CATTLE_ARS-study NS 639 A G 116 9629 NA 0.004466 213 CCA CCG P P NO
LoFreq 24-012590-038_CATTLE_ARS-study NS 645 T C 94 9356 NA 0.004168 215 CCT CCC P P NO
LoFreq 24-012590-038_CATTLE_ARS-study NS 801 A G 130 4053 NA 0.005675 267 GGA GGG G G NO
LoFreq 24-012590-038_CATTLE_ARS-study PA 245 G A 345 2426 NA 0.016488 82 AGA AAA R K YES
LoFreq 24-012590-038_CATTLE_ARS-study PA 267 A G 80 2341 NA 0.008971 89 ACA ACG T T NO
LoFreq 24-012590-038_CATTLE_ARS-study PA 295 G A 90 2389 NA 0.007116 99 GGG AGG G R YES
LoFreq 24-012590-038_CATTLE_ARS-study PA 1971 G A 165 2503 NA 0.011586 657 GGG GGA G G NO
LoFreq 24-012590-038_CATTLE_ARS-study PA 2027 T C 141 2487 NA 0.011259 676 CTG CCG L P YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 143 C A 24468 876 NA 0.993151 48 TCA TAA S * YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 145 T C 24031 876 NA 0.993151 49 TAC CAC Y H YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 147 C G 24033 876 NA 0.992009 49 TAC TAG Y * YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 149 G A 23827 876 NA 0.994292 50 AGG AAG R K YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 150 G C 24013 879 NA 0.993174 50 AGG AGC R S YES
LoFreq 24-012590-038_CATTLE_ARS-study PB1 1782 T C 216 2205 NA 0.014512 594 GCT GCC A A NO
LoFreq 24-012590-038_CATTLE_ARS-study PB1 1908 T C 1493 2342 NA 0.047395 636 TGT TGC C C NO
LoFreq 24-012590-038_CATTLE_ARS-study PB1 2086 G A 49314 2059 NA 0.998057 696 GTG ATG V M YES
GATK4 24-012590-038_CATTLE_ARS-study PB1 150 G C 41294.04 968 60 1 50 AGG AGC R S YES
GATK4 24-012590-038_CATTLE_ARS-study PB1 2086 G A 61756.04 1915 60 1 696 GTG ATG V M YES
LoFreq 24-012590-038_CATTLE_ARS-study PB2 824 A G 491 2598 NA 0.020015 275 GAC GGC D G YES
LoFreq 24-012590-038_CATTLE_ARS-study PB2 1235 A G 49314 2421 NA 0.999174 412 AAG AGG K R YES
LoFreq 24-012590-038_CATTLE_ARS-study PB2 1307 G A 438 2458 NA 0.018714 436 AGA AAA R K YES
LoFreq 24-012590-038_CATTLE_ARS-study PB2 1931 G A 883 2363 NA 0.033855 644 GGA GAA G E YES
GATK4 24-012590-038_CATTLE_ARS-study PB2 1235 A G 78497.04 2345 60 1 412 AAG AGG K R YES
LoFreq 24-012590-038_CATTLE_ARS-study HA_H5 422 A G 372 6703 NA 0.008802 141 CAT CGT H R YES
LoFreq 24-012590-038_CATTLE_ARS-study HA_H5 571 C T 23316 7222 NA 0.159651 191 CTG TTG L L NO
LoFreq 24-012590-038_CATTLE_ARS-study HA_H5 1331 T C 865 6704 NA 0.018944 444 CTA CCA L P YES
LoFreq 24-012590-038_CATTLE_ARS-study HA_H5 1381 A G 625 7320 NA 0.012432 461 AAG GAG K E YES
LoFreq 24-012590-038_CATTLE_ARS-study NA_N1 534 T C 143 5729 NA 0.007506 178 GCT GCC A A NO
LoFreq 24-012590-038_CATTLE_ARS-study NA_N1 1045 T C 205 5073 NA 0.010645 349 TTT CTT F L YES
LoFreq 24-012590-038_CATTLE_ARS-study NA_N1 1135 G A 206 5479 NA 0.008031 379 GGG AGG G R YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 145 A G 79 10888 NA 0.002755 49 AGA GGA R G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 191 T C 207 10892 NA 0.0056 64 TTC TCC F S YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 239 T C 122 12364 NA 0.00364 80 GTC GCC V A YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 269 C T 343 12880 NA 0.006677 90 CCA CTA P L YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 301 A G 544 13283 NA 0.008884 101 AGG GGG R G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 311 A G 130 13407 NA 0.005072 104 AAG AGG K R YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 358 T C 170 14157 NA 0.004309 120 TCA CCA S P YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 444 T C 175 14835 NA 0.004314 148 TGT TGC C C NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 450 C T 3134 14593 NA 0.021517 150 ACC ACT T T NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 455 A G 146 14520 NA 0.003581 152 GAA GGA E G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 493 A G 79 14997 NA 0.003934 165 ATA GTA I V YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 510 C T 81 15156 NA 0.003167 170 AAC AAT N N NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 515 T C 86 14918 NA 0.003687 172 CTG CCG L P YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 548 G A 106 14944 NA 0.003814 183 AGT AAT S N YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 555 A G 135 15096 NA 0.003776 185 ACA ACG T T NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 569 A G 94 14721 NA 0.002513 190 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 594 A G 71 14000 NA 0.002857 198 CAA CAG Q Q NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 603 A G 90 14061 NA 0.003058 201 GAA GAG E E NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 614 T C 64 14269 NA 0.005887 205 GTT GCT V A YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 631 C A 1807 14603 NA 0.015408 211 CAG AAG Q K YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 646 A G 123 14165 NA 0.003318 216 ATG GTG M V YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 648 G A 145 14048 NA 0.00363 216 ATG ATA M I YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 673 T C 117 14016 NA 0.002997 225 TCC CCC S P YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 735 A G 95 12997 NA 0.003155 245 GGA GGG G G NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 825 T C 68 11963 NA 0.003093 275 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 868 A G 75 11813 NA 0.003471 290 AGG GGG R G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 872 G A 2026 11392 NA 0.0194 291 AGG AAG R K YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 910 A G 68 8094 NA 0.003089 304 AGA GGA R G YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 912 A G 202 7951 NA 0.006037 304 AGA AGG R R NO
LoFreq 24-013051-010_CATTLE_ARS-study MP 948 A G 119 4469 NA 0.006489 316 TGA TGG * W YES
LoFreq 24-013051-010_CATTLE_ARS-study MP 958 T C 899 3785 NA 0.021929 320 TTT CTT F L YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 198 G A 345 4029 NA 0.018863 66 ATG ATA M I YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 226 A G 69 4017 NA 0.004481 76 AAC GAC N D YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 463 G A 290 4067 NA 0.010819 155 GTG ATG V M YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 475 A G 1041 3968 NA 0.025454 159 ATG GTG M V YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 687 G T 93 3995 NA 0.005757 229 AAG AAT K N YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 754 G A 83 4109 NA 0.005111 252 GAA AAA E K YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 776 T C 298 4190 NA 0.012649 259 CTC CCC L P YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 1091 A G 91 4331 NA 0.006465 364 CAG CGG Q R YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 1312 T C 465 3875 NA 0.015742 438 TCA CCA S P YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 1328 A G 193 3657 NA 0.00875 443 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NP 1413 A G 275 3022 NA 0.011913 471 GCA GCG A A NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 167 C A 683 12497 NA 0.009042 56 ACG AAG T K YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 174 T C 101 12693 NA 0.003466 58 ACT ACC T T NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 185 A G 128 12883 NA 0.003803 62 AAG AGG K R YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 190 A G 89 13281 NA 0.005045 64 ATA GTA I V YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 194 T C 556 13290 NA 0.009932 65 GTG GCG V A YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 197 A G 105 13377 NA 0.002841 66 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 209 A G 149 13878 NA 0.00317 70 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 213 A G 163 14024 NA 0.003423 71 GAA GAG E E NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 224 A G 188 14154 NA 0.003745 75 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 232 A G 127 14301 NA 0.005244 78 AAA GAA K E YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 247 T C 183 14570 NA 0.004118 83 TCT CCT S P YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 249 T C 111 14424 NA 0.00305 83 TCT TCC S S NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 255 T C 204 14486 NA 0.003659 85 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 258 T C 112 14915 NA 0.002615 86 GCT GCC A A NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 261 A G 279 14928 NA 0.00489 87 CCA CCG P P NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 340 T C 80 14922 NA 0.003418 114 TCC CCC S P YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 344 T C 139 15163 NA 0.003627 115 CTC CCC L P YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 359 A G 175 15587 NA 0.004491 120 GAC GGC D G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 364 G A 809 15712 NA 0.00961 122 GCG ACG A T YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 381 C T 146 16182 NA 0.003955 127 AAC AAT N N NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 412 T C 182 15741 NA 0.003303 138 TTC CTC F L YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 413 T C 81 15707 NA 0.002419 138 TTC TCC F S YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 446 C T 1300 15409 NA 0.013109 149 GCT GTT A V YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 447 T C 152 15393 NA 0.003833 149 GCT GCC A A NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 448 T C 71 15442 NA 0.003497 150 TTC CTC F L YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 449 T C 162 15550 NA 0.005338 150 TTC TCC F S YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 458 A G 74 15248 NA 0.00446 153 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 462 A G 100 15204 NA 0.003223 154 GGA GGG G G NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 463 G A 206 15019 NA 0.004594 155 GCA ACA A T YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 492 T C 114 15844 NA 0.00385 164 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 497 T C 120 15814 NA 0.004174 166 CTT CCT L P YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 515 A G 98 14938 NA 0.00328 172 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 521 T C 107 14513 NA 0.002825 174 GTC GCC V A YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 563 A G 72 13505 NA 0.002814 188 AAT AGT N S YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 617 G A 1143 12305 NA 0.012353 206 AGT AAT S N YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 623 A G 112 12249 NA 0.003919 208 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 631 A G 306 12111 NA 0.005615 211 AGA GGA R G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 645 T C 123 11895 NA 0.004624 215 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 652 C A 212 11514 NA 0.005211 218 CAG AAG Q K YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 664 A G 2953 11497 NA 0.037575 222 ATG GTG M V YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 668 A G 72 11593 NA 0.002847 223 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 784 A G 76 7290 NA 0.004801 262 ACT GCT T A YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 793 T C 305 6043 NA 0.00877 265 TGA CGA * R YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 801 A G 219 5355 NA 0.006909 267 GGA GGG G G NO
LoFreq 24-013051-010_CATTLE_ARS-study NS 809 A G 81 4663 NA 0.00772 270 GAT GGT D G YES
LoFreq 24-013051-010_CATTLE_ARS-study NS 828 A G 69 3421 NA 0.004969 276 TCA TCG S S NO
LoFreq 24-013051-010_CATTLE_ARS-study PA 1041 C T 407 480 NA 0.0625 347 GAC GAT D D NO
LoFreq 24-013051-010_CATTLE_ARS-study PA 1330 A G 109 467 NA 0.025696 444 AAC GAC N D YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 1593 G A 90 669 NA 0.019432 531 AGG AGA R R NO
LoFreq 24-013051-010_CATTLE_ARS-study PA 1817 A G 479 1388 NA 0.03098 606 GAC GGC D G YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 1883 T C 985 3046 NA 0.027577 628 GTG GCG V A YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 1959 T C 83 7075 NA 0.003675 653 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study PA 1973 T C 181 7593 NA 0.005005 658 TTT TCT F S YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 1984 T G 88 8105 NA 0.006786 662 TCA GCA S A YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 2034 T C 95 11164 NA 0.004389 678 CCT CCC P P NO
LoFreq 24-013051-010_CATTLE_ARS-study PA 2075 A G 80 11705 NA 0.002819 692 GAG GGG E G YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 2119 T C 192 9073 NA 0.00518 707 TTC CTC F L YES
LoFreq 24-013051-010_CATTLE_ARS-study PA 2132 T C 115 8113 NA 0.003821 711 CTC CCC L P YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 143 C A 49314 2539 NA 0.94486 48 TCA TAA S * YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 145 T C 49314 2539 NA 0.944072 49 TAC CAC Y H YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 147 C G 49314 2535 NA 0.945957 49 TAC TAG Y * YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 149 G A 49314 2532 NA 0.947867 50 AGG AAG R K YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 150 G C 49314 2542 NA 0.950039 50 AGG AGC R S YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 245 G A 112 1595 NA 0.015674 82 TGA TAA * * NO
LoFreq 24-013051-010_CATTLE_ARS-study PB1 294 T C 186 938 NA 0.01919 98 TTT TTC F F NO
LoFreq 24-013051-010_CATTLE_ARS-study PB1 300 A G 125 900 NA 0.014444 100 TGA TGG * W YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 533 A G 241 111 NA 0.117117 178 AAT AGT N S YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 1670 A G 83 145 NA 0.041379 557 CAA CGA Q R YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 1922 A G 865 599 NA 0.086811 641 AAT AGT N S YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 1981 A T 133 1041 NA 0.01633 661 ATA TTA I L YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 2125 A T 86 6057 NA 0.012217 709 ATA TTA I L YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 2160 A G 113 10215 NA 0.003818 720 GGA GGG G G NO
LoFreq 24-013051-010_CATTLE_ARS-study PB1 2255 T C 81 7857 NA 0.003055 752 TTC TCC F S YES
LoFreq 24-013051-010_CATTLE_ARS-study PB1 2266 A G 153 6886 NA 0.005083 756 AGA GGA R G YES
GATK4 24-013051-010_CATTLE_ARS-study PB1 150 G C 47693.04 1128 59.99 1 50 AGG AGC R S YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 219 A G 326 1859 NA 0.021517 73 CAA CAG Q Q NO
LoFreq 24-013051-010_CATTLE_ARS-study PB2 302 G A 94 640 NA 0.021875 101 AGG AAG R K YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 1522 C T 4342 688 NA 0.273256 508 CGG TGG R W YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 1975 A G 68 5171 NA 0.004641 659 AAC GAC N D YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2105 A G 69 9201 NA 0.004021 702 AAG AGG K R YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2142 C T 82 10765 NA 0.004645 714 AGC AGT S S NO
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2184 A G 70 11991 NA 0.005171 728 CAA CAG Q Q NO
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2207 A G 75 10475 NA 0.003341 736 AAA AGA K R YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2219 A G 169 10073 NA 0.004567 740 GAC GGC D G YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2231 T C 105 8845 NA 0.003957 744 CTT CCT L P YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2249 C T 122 6971 NA 0.004447 750 GCG GTG A V YES
LoFreq 24-013051-010_CATTLE_ARS-study PB2 2257 A G 65 6653 NA 0.003156 753 AGA GGA R G YES
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 349 C T 125 1974 NA 0.013171 117 CTG TTG L L NO
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 369 A G 66 1855 NA 0.007547 123 AGA AGG R R NO
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 411 C T 780 2009 NA 0.033848 137 TCC TCT S S NO
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 509 A G 138 1812 NA 0.011038 170 AAC AGC N S YES
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 516 A G 213 1886 NA 0.014846 172 GCA GCG A A NO
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 613 A G 225 1931 NA 0.015536 205 AAT GAT N D YES
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 1280 A G 96 2193 NA 0.00912 427 AAG AGG K R YES
LoFreq 24-013051-010_CATTLE_ARS-study HA_H5 1418 A G 452 2251 NA 0.021768 473 GAT GGT D G YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 55 A G 23835 1092 NA 1 19 ATA GTA I V YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 365 T C 426 1774 NA 0.035513 122 ATC ACC I T YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 594 A G 111 2028 NA 0.008876 198 CCA CCG P P NO
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 863 T C 184 2075 NA 0.013012 288 ATT ACT I T YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 1127 A G 103 1923 NA 0.00832 376 GAT GGT D G YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 1164 A G 357 1840 NA 0.022283 388 TCA TCG S S NO
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 1255 A G 81 1806 NA 0.009967 419 AGG GGG R G YES
LoFreq 24-013051-010_CATTLE_ARS-study NA_N1 1274 A G 247 1808 NA 0.01604 425 GAG GGG E G YES
GATK4 24-013051-010_CATTLE_ARS-study NA_N1 55 A G 22171.04 656 60 1 19 ATA GTA I V YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 145 A G 110 12739 NA 0.002904 49 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 157 T C 98 12747 NA 0.003922 53 TCA CCA S P YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 224 A G 239 13920 NA 0.004741 75 CAG CGG Q R YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 239 T C 84 14430 NA 0.002911 80 GTC GCC V A YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 264 A G 95 14733 NA 0.003122 88 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 303 G A 130 15350 NA 0.004104 101 AGG AGA R R NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 311 A G 70 15381 NA 0.004031 104 AAG AGG K R YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 339 A G 96 16004 NA 0.002749 113 AAA AAG K K NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 342 A G 68 15918 NA 0.003015 114 GAA GAG E E NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 362 C T 108 16383 NA 0.003662 121 ACC ATC T I YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 409 A G 65 16666 NA 0.00288 137 ACG GCG T A YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 444 T C 88 17240 NA 0.003306 148 TGT TGC C C NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 455 A G 65 16920 NA 0.002719 152 GAA GGA E G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 518 T C 189 17447 NA 0.00384 173 ATC ACC I T YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 555 A G 166 17291 NA 0.003759 185 ACA ACG T T NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 569 A G 103 16852 NA 0.002552 190 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 572 A G 87 16440 NA 0.002737 191 CAG CGG Q R YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 590 A G 107 16061 NA 0.002864 197 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 603 A G 105 16196 NA 0.002902 201 GAA GAG E E NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 611 A G 69 16279 NA 0.002396 204 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 649 A G 90 15966 NA 0.003445 217 AGG GGG R G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 665 A G 85 15729 NA 0.003179 222 CAT CGT H R YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 673 T C 172 15904 NA 0.003647 225 TCC CCC S P YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 688 A G 108 15752 NA 0.003111 230 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 723 A G 372 14544 NA 0.009488 241 CAA CAG Q Q NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 735 A G 73 14671 NA 0.002726 245 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 737 T C 77 14692 NA 0.002859 246 GTG GCG V A YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 757 T C 106 14673 NA 0.003339 253 TGA CGA * R YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 816 T C 103 13838 NA 0.003396 272 TCT TCC S S NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 871 A G 82 13029 NA 0.003454 291 AGG GGG R G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 879 C T 726 12594 NA 0.009211 293 TTC TTT F F NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 905 A G 69 9752 NA 0.003999 302 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 909 A G 75 9428 NA 0.003394 303 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 910 A G 123 9204 NA 0.004237 304 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study MP 942 A G 152 5950 NA 0.006218 314 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study MP 965 A G 98 3897 NA 0.006159 322 CAA CGA Q R YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 170 T C 88 6352 NA 0.003621 57 ATC ACC I T YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 237 G A 2117 6849 NA 0.028471 79 CTG CTA L L NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 242 A G 74 6967 NA 0.004162 81 GAA GGA E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 409 A G 76 7638 NA 0.003535 137 ATG GTG M V YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 474 A G 653 7250 NA 0.013793 158 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 508 T C 112 7277 NA 0.004535 170 TCA CCA S P YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 552 A G 75 7340 NA 0.00436 184 AAA AAG K K NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 634 G A 141 6764 NA 0.006209 212 GGA AGA G R YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 687 G A 189 6792 NA 0.006773 229 AAG AAA K K NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 825 T C 231 6947 NA 0.008349 275 TGT TGC C C NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 976 A G 117 6939 NA 0.009367 326 AGT GGT S G YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 1016 A G 136 7110 NA 0.005204 339 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 1075 T C 79 7244 NA 0.003865 359 TCC CCC S P YES
LoFreq 24-013051-011_CATTLE_ARS-study NP 1155 C T 72 7720 NA 0.004145 385 TAC TAT Y Y NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 1179 A G 84 7537 NA 0.003715 393 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 1314 A G 986 6218 NA 0.020585 438 TCA TCG S S NO
LoFreq 24-013051-011_CATTLE_ARS-study NP 1357 C T 97 6085 NA 0.005094 453 CCT TCT P S YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 174 T C 109 13471 NA 0.003563 58 ACT ACC T T NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 197 A G 80 14173 NA 0.002399 66 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 209 A G 91 14692 NA 0.00245 70 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 213 A G 199 14836 NA 0.003909 71 GAA GAG E E NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 224 A G 83 14948 NA 0.002609 75 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 247 T C 67 15388 NA 0.002664 83 TCT CCT S P YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 255 T C 71 15305 NA 0.002287 85 CCT CCC P P NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 258 T C 311 15690 NA 0.00427 86 GCT GCC A A NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 267 C T 164 16059 NA 0.003861 89 TAC TAT Y Y NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 294 G A 494 16327 NA 0.006247 98 ATG ATA M I YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 308 T C 82 16583 NA 0.003498 103 TTC TCC F S YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 314 T C 145 16846 NA 0.004511 105 CTC CCC L P YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 336 A G 65 15865 NA 0.002962 112 GCA GCG A A NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 380 A C 93 17235 NA 0.002785 127 AAC ACC N T YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 380 A G 66 17235 NA 0.002437 127 AAC AGC N S YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 400 T C 71 16690 NA 0.005213 134 TTC CTC F L YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 412 T C 200 16662 NA 0.003361 138 TTC CTC F L YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 447 T C 175 16295 NA 0.003866 149 GCT GCC A A NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 462 A G 155 16133 NA 0.003781 154 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 492 T C 159 16738 NA 0.004361 164 CCT CCC P P NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 497 T C 91 16703 NA 0.003652 166 CTT CCT L P YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 515 A G 119 15769 NA 0.003424 172 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 540 C T 99 15153 NA 0.003366 180 GTC GTT V V NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 562 A G 308 14098 NA 0.005249 188 AAT GAT N D YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 610 A G 94 13081 NA 0.003364 204 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 626 A G 89 13019 NA 0.002996 209 GAT GGT D G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 631 A G 111 12910 NA 0.003253 211 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 636 T C 170 12988 NA 0.00385 212 CCT CCC P P NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 641 T C 85 12914 NA 0.004646 214 CTC CCC L P YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 668 A G 113 12311 NA 0.003493 223 GAG GGG E G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 670 A G 73 12255 NA 0.005304 224 AGG GGG R G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 693 A G 66 11894 NA 0.003279 231 TGA TGG * W YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 715 A G 82 12161 NA 0.002631 239 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 718 A G 130 12048 NA 0.003652 240 AGT GGT S G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 775 A G 66 8376 NA 0.003104 259 AGC GGC S G YES
LoFreq 24-013051-011_CATTLE_ARS-study NS 801 A G 103 5854 NA 0.004271 267 GGA GGG G G NO
LoFreq 24-013051-011_CATTLE_ARS-study NS 805 A G 131 5563 NA 0.005573 269 AGA GGA R G YES
LoFreq 24-013051-011_CATTLE_ARS-study PA 156 T C 97 4599 NA 0.006088 52 CAT CAC H H NO
LoFreq 24-013051-011_CATTLE_ARS-study PA 171 A G 83 4340 NA 0.005069 57 CGA CGG R R NO
LoFreq 24-013051-011_CATTLE_ARS-study PA 188 T G 1018 4110 NA 0.024331 63 GTA GGA V G YES
LoFreq 24-013051-011_CATTLE_ARS-study PA 1317 G A 797 2395 NA 0.03048 439 GCG GCA A A NO
LoFreq 24-013051-011_CATTLE_ARS-study PA 1757 T C 101 2909 NA 0.006188 586 CTT CCT L P YES
LoFreq 24-013051-011_CATTLE_ARS-study PA 1904 A T 289 3100 NA 0.019032 635 AAA ATA K I YES
LoFreq 24-013051-011_CATTLE_ARS-study PA 2130 C A 74 3570 NA 0.005602 710 TTC TTA F L YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 143 C A 29389 1096 NA 0.968978 48 TCA TAA S * YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 145 T C 28694 1096 NA 0.967153 49 TAC CAC Y H YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 147 C G 28754 1094 NA 0.968921 49 TAC TAG Y * YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 149 G A 28702 1099 NA 0.966333 50 AGG AAG R K YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 150 G C 29240 1109 NA 0.970243 50 AGG AGC R S YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 173 A G 298 2912 NA 0.030907 58 GAA GGA E G YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 1998 C A 70 3698 NA 0.005138 666 CAC CAA H Q YES
LoFreq 24-013051-011_CATTLE_ARS-study PB1 1999 C T 179 3704 NA 0.009449 667 CAC TAC H Y YES
GATK4 24-013051-011_CATTLE_ARS-study PB1 150 G C 23920.04 1080 59.99 1 50 AGG AGC R S YES
LoFreq 24-013051-011_CATTLE_ARS-study PB2 248 A G 85 2992 NA 0.007353 83 GAT GGT D G YES
LoFreq 24-013051-011_CATTLE_ARS-study PB2 930 A G 160 2819 NA 0.010997 310 ATA ATG I M YES
LoFreq 24-013051-011_CATTLE_ARS-study PB2 2023 T C 431 3906 NA 0.014593 675 TTG CTG L L NO
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 238 A G 204 4190 NA 0.007876 80 AAC GAC N D YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 304 G A 216 4559 NA 0.009651 102 GCT ACT A T YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 314 T C 144 4670 NA 0.007923 105 CTC CCC L P YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 446 C T 76 5116 NA 0.004887 149 GCA GTA A V YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 742 A G 78 4650 NA 0.005161 248 ATC GTC I V YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 811 A G 86 5065 NA 0.004738 271 AAA GAA K E YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 984 C T 65 5040 NA 0.005357 328 GTC GTT V V NO
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 1061 T C 104 5132 NA 0.006625 354 TTT TCT F S YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 1092 T C 112 4803 NA 0.005621 364 GAT GAC D D NO
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 1283 A G 73 5159 NA 0.00504 428 AAA AGA K R YES
LoFreq 24-013051-011_CATTLE_ARS-study HA_H5 1364 T C 69 5635 NA 0.004082 455 TTC TCC F S YES
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 55 A G 49314 2534 NA 0.998421 19 ATA GTA I V YES
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 224 T C 117 4430 NA 0.010609 75 CTT CCT L P YES
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 313 G A 89 4953 NA 0.00747 105 GGT AGT G S YES
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 363 C T 127 5265 NA 0.006078 121 TTC TTT F F NO
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 699 C T 105 5397 NA 0.006115 233 TGC TGT C C NO
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 822 C T 114 5314 NA 0.006022 274 TAC TAT Y Y NO
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 895 T C 196 5170 NA 0.00677 299 TCG CCG S P YES
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 1182 A G 222 4267 NA 0.010546 394 GTA GTG V V NO
LoFreq 24-013051-011_CATTLE_ARS-study NA_N1 1405 A G 85 1142 NA 0.011384 469 AAG GAG K E YES
GATK4 24-013051-011_CATTLE_ARS-study NA_N1 55 A G 41602.04 1240 60 1 19 ATA GTA I V YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 145 A G 89 10496 NA 0.002954 49 AGA GGA R G YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 281 A G 86 12484 NA 0.004245 94 GAC GGC D G YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 322 A G 663 13142 NA 0.010501 108 ACA GCA T A YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 401 G T 2106 13746 NA 0.021024 134 AGG ATG R M YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 500 C G 4415 14448 NA 0.028101 167 ACC AGC T S YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 590 A G 81 13128 NA 0.003199 197 GAG GGG E G YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 603 A G 75 13278 NA 0.003088 201 GAA GAG E E NO
LoFreq 24-013051-071_CATTLE_ARS-study MP 673 T C 188 13199 NA 0.004394 225 TCC CCC S P YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 735 A G 86 12274 NA 0.003259 245 GGA GGG G G NO
LoFreq 24-013051-071_CATTLE_ARS-study MP 911 G A 359 7672 NA 0.015381 304 AGA AAA R K YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 929 C T 864 6291 NA 0.017008 310 GCA GTA A V YES
LoFreq 24-013051-071_CATTLE_ARS-study MP 966 A G 335 3229 NA 0.019201 322 CAA CAG Q Q NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 326 T C 453 6436 NA 0.013207 109 ATC ACC I T YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 402 T C 195 6590 NA 0.007587 134 ACT ACC T T NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 417 G A 81 6389 NA 0.005478 139 TGG TGA W * YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 431 A G 442 6505 NA 0.011376 144 AAT AGT N S YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 463 G A 1245 6303 NA 0.02126 155 GTG ATG V M YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 506 G A 227 6353 NA 0.009444 169 GGC GAC G D YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 583 C T 2362 6817 NA 0.031979 195 CGA TGA R * YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 619 T C 380 6201 NA 0.011127 207 TGG CGG W R YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 848 T C 117 6066 NA 0.006594 283 CTT CCT L P YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 856 G C 1710 6342 NA 0.024913 286 GCC CCC A P YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 926 A G 99 6977 NA 0.005733 309 AAC AGC N S YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 939 C T 1688 6756 NA 0.025607 313 TTC TTT F F NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 1022 T C 257 6299 NA 0.00889 341 CTG CCG L P YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 1028 T C 79 6271 NA 0.008611 343 GTG GCG V A YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 1069 C T 143 6310 NA 0.005705 357 CAA TAA Q * YES
LoFreq 24-013051-071_CATTLE_ARS-study NP 1314 A G 622 5667 NA 0.017999 438 TCA TCG S S NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 1323 A G 444 5617 NA 0.015845 441 AGA AGG R R NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 1381 C A 1873 5145 NA 0.037123 461 CGG AGG R R NO
LoFreq 24-013051-071_CATTLE_ARS-study NP 1400 C T 445 4499 NA 0.012892 467 TCG TTG S L YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 194 T C 323 11176 NA 0.009037 65 GTG GCG V A YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 255 T C 82 12146 NA 0.002882 85 CCT CCC P P NO
LoFreq 24-013051-071_CATTLE_ARS-study NS 294 G A 1296 12938 NA 0.012908 98 ATG ATA M I YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 344 T C 429 12626 NA 0.007128 115 CTC CCC L P YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 359 A G 179 12960 NA 0.005478 120 GAC GGC D G YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 396 A G 80 13186 NA 0.003185 132 GCA GCG A A NO
LoFreq 24-013051-071_CATTLE_ARS-study NS 412 T C 107 13243 NA 0.002945 138 TTC CTC F L YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 447 T C 123 12906 NA 0.004107 149 GCT GCC A A NO
LoFreq 24-013051-071_CATTLE_ARS-study NS 462 A G 118 12682 NA 0.003864 154 GGA GGG G G NO
LoFreq 24-013051-071_CATTLE_ARS-study NS 507 T C 1501 13126 NA 0.016913 169 CAT CAC H H NO
LoFreq 24-013051-071_CATTLE_ARS-study NS 536 G A 136 11712 NA 0.004781 179 GGG GAG G E YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 631 A G 121 10238 NA 0.003907 211 AGA GGA R G YES
LoFreq 24-013051-071_CATTLE_ARS-study NS 764 A G 74 7295 NA 0.004249 255 AAC AGC N S YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 231 G A 668 4066 NA 0.019675 77 GAG GAA E E NO
LoFreq 24-013051-071_CATTLE_ARS-study PA 282 C G 76 2051 NA 0.007801 94 ATC ATG I M YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 899 A G 287 2552 NA 0.023511 300 GAG GGG E G YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 974 C A 70 2387 NA 0.007122 325 CCG CAG P Q YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 1291 G A 1765 3130 NA 0.04345 431 GAC AAC D N YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 1621 T C 143 3038 NA 0.010533 541 TGT CGT C R YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 1684 T C 69 3108 NA 0.009974 562 TTC CTC F L YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 1904 A T 577 3123 NA 0.028818 635 AAA ATA K I YES
LoFreq 24-013051-071_CATTLE_ARS-study PA 2062 G A 91 5577 NA 0.005917 688 GAA AAA E K YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 143 C A 43903 1609 NA 0.991299 48 TCA TAA S * YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 145 T C 43178 1609 NA 0.990677 49 TAC CAC Y H YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 147 C G 43415 1609 NA 0.991299 49 TAC TAG Y * YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 149 G A 43549 1609 NA 0.992542 50 AGG AAG R K YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 150 G C 44049 1614 NA 0.995663 50 AGG AGC R S YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 1012 C G 190 1969 NA 0.018283 338 CAG GAG Q E YES
LoFreq 24-013051-071_CATTLE_ARS-study PB1 2251 C T 536 3039 NA 0.018756 751 CTG TTG L L NO
GATK4 24-013051-071_CATTLE_ARS-study PB1 150 G C 59734.04 1395 60 1 50 AGG AGC R S YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 171 C T 160 4556 NA 0.008121 57 ATC ATT I I NO
LoFreq 24-013051-071_CATTLE_ARS-study PB2 641 A G 188 3810 NA 0.008924 214 AAG AGG K R YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 885 A G 435 4111 NA 0.013379 295 GTA GTG V V NO
LoFreq 24-013051-071_CATTLE_ARS-study PB2 895 C A 759 4056 NA 0.021203 299 CGG AGG R R NO
LoFreq 24-013051-071_CATTLE_ARS-study PB2 1528 A G 203 3847 NA 0.009618 510 AAC GAC N D YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 1868 C T 88 4115 NA 0.006075 623 GCT GTT A V YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 1892 T C 137 4149 NA 0.007713 631 CTG CCG L P YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 1981 G A 276 3943 NA 0.029673 661 GCC ACC A T YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 2142 C A 10070 4424 NA 0.129521 714 AGC AGA S R YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 2213 A G 222 3759 NA 0.010641 738 AAA AGA K R YES
LoFreq 24-013051-071_CATTLE_ARS-study PB2 2238 C A 398 3002 NA 0.014657 746 GAC GAA D E YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 402 C A 169 4530 NA 0.007947 134 CCC CCA P P NO
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 731 T C 1200 4026 NA 0.050174 244 TTC TCC F S YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 746 T C 3259 4249 NA 0.057425 249 TTA TCA L S YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 825 A G 444 4183 NA 0.016017 275 AAA AAG K K NO
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 924 C A 102 3843 NA 0.006766 308 CAC CAA H Q YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 982 G A 168 4239 NA 0.009436 328 GTC ATC V I YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 1367 A G 356 5167 NA 0.014322 456 CAT CGT H R YES
LoFreq 24-013051-071_CATTLE_ARS-study HA_H5 1658 T C 78 2953 NA 0.008127 553 TTA TCA L S YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 55 A G 49314 3141 NA 1 19 ATA GTA I V YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 388 A G 314 5758 NA 0.010073 130 AGA GGA R G YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 399 C T 255 6062 NA 0.009073 133 TTC TTT F F NO
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 411 A G 135 6278 NA 0.006531 137 GGA GGG G G NO
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 719 C T 2600 6354 NA 0.036827 240 ACC ATC T I YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 849 T C 1137 5798 NA 0.025181 283 CCT CCC P P NO
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 938 A G 3285 6233 NA 0.05134 313 CAA CGA Q R YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 1102 A G 827 5863 NA 0.017056 368 AGA GGA R G YES
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 1344 A T 197 3856 NA 0.009077 448 GTA GTT V V NO
LoFreq 24-013051-071_CATTLE_ARS-study NA_N1 1403 A G 221 1589 NA 0.016992 468 GAC GGC D G YES
GATK4 24-013051-071_CATTLE_ARS-study NA_N1 55 A G 46651.04 1384 60 1 19 ATA GTA I V YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 145 A G 84 12510 NA 0.002478 49 AGA GGA R G YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 180 G A 120 12756 NA 0.003606 60 TTG TTA L L NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 215 G A 89 13538 NA 0.003029 72 CGA CAA R Q YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 224 A G 114 13830 NA 0.003254 75 CAG CGG Q R YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 238 G A 209 14190 NA 0.004299 80 GTC ATC V I YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 264 A G 114 14729 NA 0.00353 88 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 377 G A 179 16212 NA 0.004379 126 AGT AAT S N YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 379 T A 181 16289 NA 0.004052 127 TGT AGT C S YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 437 T C 102 16743 NA 0.002867 146 CTA CCA L P YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 475 C A 83 16596 NA 0.002711 159 CAT AAT H N YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 577 G A 67 16636 NA 0.002705 193 GCT ACT A T YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 580 G T 73 16550 NA 0.003263 194 GGA TGA G * YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 590 A G 119 16107 NA 0.003042 197 GAG GGG E G YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 613 G A 130 16598 NA 0.003494 205 GTT ATT V I YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 673 T C 190 16375 NA 0.003542 225 TCC CCC S P YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 735 A G 66 15446 NA 0.00259 245 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 737 T C 178 15556 NA 0.003986 246 GTG GCG V A YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 747 G A 110 15137 NA 0.004162 249 CAG CAA Q Q NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 782 A G 131 15202 NA 0.006249 261 TAT TGT Y C YES
LoFreq 24-013051-115_CATTLE_ARS-study MP 813 T C 506 14668 NA 0.006749 271 GAT GAC D D NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 825 T C 180 14118 NA 0.004321 275 CCT CCC P P NO
LoFreq 24-013051-115_CATTLE_ARS-study MP 846 G A 65 13932 NA 0.003876 282 TCG TCA S S NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 397 C G 74 8449 NA 0.003314 133 CTC GTC L V YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 501 G A 133 7853 NA 0.005603 167 ATG ATA M I YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 504 A G 95 7860 NA 0.003944 168 CAA CAG Q Q NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 527 C T 98 8076 NA 0.005944 176 TCC TTC S F YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 565 A G 122 8205 NA 0.006703 189 ATG GTG M V YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 590 T C 207 8228 NA 0.00632 197 ATC ACC I T YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 600 A G 125 8306 NA 0.004334 200 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 678 C T 179 7623 NA 0.00551 226 CTC CTT L L NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 927 C A 87 8536 NA 0.0041 309 AAC AAA N K YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 1149 C T 26269 9091 NA 0.150038 383 AGC AGT S S NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 1202 C A 238 8465 NA 0.007324 401 GCA GAA A E YES
LoFreq 24-013051-115_CATTLE_ARS-study NP 1215 A G 92 8369 NA 0.003943 405 CAA CAG Q Q NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 1242 G A 99 8144 NA 0.00528 414 GTG GTA V V NO
LoFreq 24-013051-115_CATTLE_ARS-study NP 1294 A G 10884 7867 NA 0.0872 432 AAC GAC N D YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 162 C T 158 12394 NA 0.004196 54 ATC ATT I I NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 183 G A 515 13000 NA 0.007769 61 GGG GGA G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 184 A G 1820 12942 NA 0.015454 62 AAG GAG K E YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 197 A G 277 13375 NA 0.004785 66 GAG GGG E G YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 250 G A 2938 14551 NA 0.020342 84 GTG ATG V M YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 258 T C 386 14777 NA 0.005143 86 GCT GCC A A NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 314 T C 108 15738 NA 0.004384 105 CTC CCC L P YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 346 A G 93 14787 NA 0.002976 116 AGT GGT S G YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 447 T C 65 15350 NA 0.002671 149 GCT GCC A A NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 462 A G 147 15121 NA 0.003637 154 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 471 C T 119 14604 NA 0.003287 157 GTC GTT V V NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 492 T C 72 15781 NA 0.003232 164 CCT CCC P P NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 564 T C 97 13691 NA 0.003725 188 AAT AAC N N NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 645 T C 137 12301 NA 0.004634 215 CCT CCC P P NO
LoFreq 24-013051-115_CATTLE_ARS-study NS 664 A G 18123 11899 NA 0.114043 222 ATG GTG M V YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 668 A G 101 11926 NA 0.003354 223 GAG GGG E G YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 781 A G 103 7660 NA 0.004308 261 ACA GCA T A YES
LoFreq 24-013051-115_CATTLE_ARS-study NS 801 A G 126 5659 NA 0.004771 267 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study PA 679 G A 131 2443 NA 0.010643 227 GAA AAA E K YES
LoFreq 24-013051-115_CATTLE_ARS-study PA 714 G A 263 2333 NA 0.014145 238 CCG CCA P P NO
LoFreq 24-013051-115_CATTLE_ARS-study PA 718 G A 66 2341 NA 0.006408 240 GGC AGC G S YES
LoFreq 24-013051-115_CATTLE_ARS-study PA 784 A G 94 2684 NA 0.007452 262 AAG GAG K E YES
LoFreq 24-013051-115_CATTLE_ARS-study PA 857 A G 68 2517 NA 0.006357 286 GAT GGT D G YES
LoFreq 24-013051-115_CATTLE_ARS-study PA 1061 T A 395 2565 NA 0.017934 354 ATT AAT I N YES
LoFreq 24-013051-115_CATTLE_ARS-study PA 1281 G A 79 3137 NA 0.007332 427 GAG GAA E E NO
LoFreq 24-013051-115_CATTLE_ARS-study PA 1289 A G 68 3173 NA 0.005673 430 GAA GGA E G YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 120 G T 49314 5424 NA 0.856195 40 ATG ATT M I YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 123 C A 49314 5440 NA 0.857169 41 GAC GAA D E YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 143 C A 7880 5506 NA 0.088631 48 TCA TAA S * YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 145 T C 8238 5587 NA 0.087704 49 TAC CAC Y H YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 147 C G 7973 5451 NA 0.089708 49 TAC TAG Y * YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 149 G A 7604 5411 NA 0.090556 50 AGG AAG R K YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 150 G C 7473 5371 NA 0.092348 50 AGG AGC R S YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 1570 A G 181 2811 NA 0.01174 524 ATC GTC I V YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 1616 A G 323 2718 NA 0.014717 539 GAT GGT D G YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 2086 G A 12862 2868 NA 0.21304 696 GTG ATG V M YES
LoFreq 24-013051-115_CATTLE_ARS-study PB1 2220 A G 67 6887 NA 0.003775 740 TAA TAG * * NO
GATK4 24-013051-115_CATTLE_ARS-study PB1 120 G T 46186.04 1674 59.96 1 40 ATG ATT M I YES
GATK4 24-013051-115_CATTLE_ARS-study PB1 123 C A 28929.04 1680 59.96 1 41 GAC GAA D E YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 161 A C 147 1957 NA 0.012264 54 AAA ACA K T YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 516 G T 126 2042 NA 0.011263 172 GTG GTT V V NO
LoFreq 24-013051-115_CATTLE_ARS-study PB2 524 G A 68 2071 NA 0.009174 175 AGA AAA R K YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 666 T C 253 1869 NA 0.016051 222 GGT GGC G G NO
LoFreq 24-013051-115_CATTLE_ARS-study PB2 930 A G 98 2198 NA 0.010009 310 ATA ATG I M YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1235 A G 344 2138 NA 0.032741 412 AAG AGG K R YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1261 G A 81 2069 NA 0.00725 421 GTC ATC V I YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1330 G A 258 2279 NA 0.016235 444 GTG ATG V M YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1351 A G 111 2332 NA 0.010292 451 ATT GTT I V YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1560 G A 99 1988 NA 0.009557 520 GAG GAA E E NO
LoFreq 24-013051-115_CATTLE_ARS-study PB2 1884 A G 83 2233 NA 0.007613 628 CAA CAG Q Q NO
LoFreq 24-013051-115_CATTLE_ARS-study PB2 2056 G A 72 2189 NA 0.006396 686 GTG ATG V M YES
LoFreq 24-013051-115_CATTLE_ARS-study PB2 2100 A T 496 2177 NA 0.025723 700 GAA GAT E D YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 204 A G 156 3174 NA 0.009767 68 TTA TTG L L NO
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 857 A T 193 4760 NA 0.009454 286 GAA GTA E V YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 915 G A 78 4002 NA 0.005747 305 ATG ATA M I YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 978 G A 157 4513 NA 0.008642 326 AAG AAA K K NO
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1052 T A 346 4518 NA 0.012838 351 ATA AAA I K YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1068 G A 144 4797 NA 0.007922 356 GAG GAA E E NO
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1079 A G 81 4743 NA 0.005693 360 CAG CGG Q R YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1133 G A 126 5863 NA 0.006822 378 GGG GAG G E YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1150 G A 68 5674 NA 0.004582 384 GAA AAA E K YES
LoFreq 24-013051-115_CATTLE_ARS-study HA_H5 1296 A T 227 6528 NA 0.007353 432 GGA GGT G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 330 T A 319 5346 NA 0.008979 110 TCT TCA S S NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 393 C T 1728 5701 NA 0.029995 131 ACC ACT T T NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 411 A G 92 6124 NA 0.004899 137 GGA GGG G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 468 A G 203 6070 NA 0.009885 156 AGA AGG R R NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 568 T C 197 6068 NA 0.007581 190 TGG CGG W R YES
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 777 G T 132 6364 NA 0.006757 259 GAG GAT E D YES
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 969 G A 315 5989 NA 0.010519 323 GGG GGA G G NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 1143 T C 108 5652 NA 0.006369 381 ACT ACC T T NO
LoFreq 24-013051-115_CATTLE_ARS-study NA_N1 1176 C T 228 5028 NA 0.009149 392 GAC GAT D D NO
LoFreq 24-013051-117_CATTLE_ARS-study MP 238 G A 255 13924 NA 0.004884 80 GTC ATC V I YES
LoFreq 24-013051-117_CATTLE_ARS-study MP 264 A G 105 14418 NA 0.00326 88 GGA GGG G G NO
LoFreq 24-013051-117_CATTLE_ARS-study MP 438 A G 103 16834 NA 0.003089 146 CTA CTG L L NO
LoFreq 24-013051-117_CATTLE_ARS-study MP 673 T C 73 16393 NA 0.00244 225 TCC CCC S P YES
LoFreq 24-013051-117_CATTLE_ARS-study MP 735 A G 85 15490 NA 0.002776 245 GGA GGG G G NO
LoFreq 24-013051-117_CATTLE_ARS-study MP 747 G A 594 15210 NA 0.008941 249 CAG CAA Q Q NO
LoFreq 24-013051-117_CATTLE_ARS-study MP 782 A G 82 15199 NA 0.005066 261 TAT TGT Y C YES
LoFreq 24-013051-117_CATTLE_ARS-study MP 813 T C 184 14774 NA 0.003926 271 GAT GAC D D NO
LoFreq 24-013051-117_CATTLE_ARS-study NP 293 G A 100 8151 NA 0.004539 98 AGG AAG R K YES
LoFreq 24-013051-117_CATTLE_ARS-study NP 565 A G 374 8690 NA 0.010127 189 ATG GTG M V YES
LoFreq 24-013051-117_CATTLE_ARS-study NP 822 C A 103 7991 NA 0.005131 274 TCC TCA S S NO
LoFreq 24-013051-117_CATTLE_ARS-study NP 1149 C T 37738 9427 NA 0.191896 383 AGC AGT S S NO
LoFreq 24-013051-117_CATTLE_ARS-study NP 1202 C A 1301 8811 NA 0.018954 401 GCA GAA A E YES
LoFreq 24-013051-117_CATTLE_ARS-study NP 1294 A G 11736 8093 NA 0.088472 432 AAC GAC N D YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 177 T C 172 12561 NA 0.005652 59 CGT CGC R R NO
LoFreq 24-013051-117_CATTLE_ARS-study NS 191 T C 177 13081 NA 0.005581 64 ATA ACA I T YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 197 A G 86 13078 NA 0.002523 66 GAG GGG E G YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 203 T C 256 13489 NA 0.006153 68 ATT ACT I T YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 214 G A 228 13725 NA 0.00459 72 GAA AAA E K YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 255 T C 73 14100 NA 0.002411 85 CCT CCC P P NO
LoFreq 24-013051-117_CATTLE_ARS-study NS 412 T C 98 15363 NA 0.002408 138 TTC CTC F L YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 611 G A 100 12570 NA 0.003421 204 AGA AAA R K YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 631 A G 92 12365 NA 0.003397 211 AGA GGA R G YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 664 A G 22054 11796 NA 0.131061 222 ATG GTG M V YES
LoFreq 24-013051-117_CATTLE_ARS-study NS 691 T C 117 11254 NA 0.003643 231 TGA CGA * R YES
LoFreq 24-013051-117_CATTLE_ARS-study PA 714 G A 119 3430 NA 0.00758 238 CCG CCA P P NO
LoFreq 24-013051-117_CATTLE_ARS-study PA 1061 T A 196 3610 NA 0.009141 354 ATT AAT I N YES
LoFreq 24-013051-117_CATTLE_ARS-study PA 1168 C T 86 3809 NA 0.006038 390 CTA TTA L L NO
LoFreq 24-013051-117_CATTLE_ARS-study PB1 143 C A 26275 1151 NA 0.861859 48 TCA TAA S * YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 145 T C 25764 1158 NA 0.856649 49 TAC CAC Y H YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 147 C G 25761 1156 NA 0.857266 49 TAC TAG Y * YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 149 G A 25275 1170 NA 0.847863 50 AGG AAG R K YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 150 G C 25295 1173 NA 0.849105 50 AGG AGC R S YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 919 C A 194 2514 NA 0.013126 307 CAC AAC H N YES
LoFreq 24-013051-117_CATTLE_ARS-study PB1 2086 G A 14387 3740 NA 0.188503 696 GTG ATG V M YES
GATK4 24-013051-117_CATTLE_ARS-study PB1 150 G C 41398.04 1056 60 1 50 AGG AGC R S YES
LoFreq 24-013051-117_CATTLE_ARS-study PB2 666 T C 545 3210 NA 0.020561 222 GGT GGC G G NO
LoFreq 24-013051-117_CATTLE_ARS-study PB2 1235 A G 212 3397 NA 0.019135 412 AAG AGG K R YES
LoFreq 24-013051-117_CATTLE_ARS-study PB2 1330 G A 202 3657 NA 0.011485 444 GTG ATG V M YES
LoFreq 24-013051-117_CATTLE_ARS-study PB2 1971 T C 131 3299 NA 0.007275 657 AAT AAC N N NO
LoFreq 24-013051-117_CATTLE_ARS-study HA_H5 1052 T A 140 4954 NA 0.007671 351 ATA AAA I K YES
LoFreq 24-013051-117_CATTLE_ARS-study HA_H5 1059 G A 68 5343 NA 0.005615 353 GGG GGA G G NO
LoFreq 24-013051-117_CATTLE_ARS-study HA_H5 1296 A T 650 7050 NA 0.012766 432 GGA GGT G G NO
LoFreq 24-013051-117_CATTLE_ARS-study NA_N1 312 C T 125 6512 NA 0.005989 104 AAC AAT N N NO
LoFreq 24-013051-117_CATTLE_ARS-study NA_N1 393 C T 489 7044 NA 0.012493 131 ACC ACT T T NO
LoFreq 24-013051-117_CATTLE_ARS-study NA_N1 795 A G 214 7159 NA 0.007543 265 AAA AAG K K NO
LoFreq 24-013051-117_CATTLE_ARS-study NA_N1 1245 A G 68 6051 NA 0.005619 415 TTA TTG L L NO
LoFreq 24-013051-118_CATTLE_ARS-study MP 145 A G 135 12947 NA 0.003167 49 AGA GGA R G YES
LoFreq 24-013051-118_CATTLE_ARS-study MP 238 G A 772 14874 NA 0.008538 80 GTC ATC V I YES
LoFreq 24-013051-118_CATTLE_ARS-study MP 264 A G 68 15324 NA 0.002741 88 GGA GGG G G NO
LoFreq 24-013051-118_CATTLE_ARS-study MP 621 T C 80 17980 NA 0.002725 207 AGT AGC S S NO
LoFreq 24-013051-118_CATTLE_ARS-study MP 673 T C 176 17385 NA 0.003336 225 TCC CCC S P YES
LoFreq 24-013051-118_CATTLE_ARS-study MP 713 A G 75 16207 NA 0.003208 238 CAG CGG Q R YES
LoFreq 24-013051-118_CATTLE_ARS-study MP 747 G A 282 16078 NA 0.006033 249 CAG CAA Q Q NO
LoFreq 24-013051-118_CATTLE_ARS-study MP 782 A G 165 16077 NA 0.00566 261 TAT TGT Y C YES
LoFreq 24-013051-118_CATTLE_ARS-study NP 526 T G 529 8337 NA 0.011275 176 TCC GCC S A YES
LoFreq 24-013051-118_CATTLE_ARS-study NP 565 A G 353 8375 NA 0.010388 189 ATG GTG M V YES
LoFreq 24-013051-118_CATTLE_ARS-study NP 932 A G 92 8931 NA 0.004703 311 CAA CGA Q R YES
LoFreq 24-013051-118_CATTLE_ARS-study NP 1149 C T 44937 8817 NA 0.235114 383 AGC AGT S S NO
LoFreq 24-013051-118_CATTLE_ARS-study NP 1179 A G 75 8404 NA 0.003094 393 GGA GGG G G NO
LoFreq 24-013051-118_CATTLE_ARS-study NP 1202 C A 997 8259 NA 0.015619 401 GCA GAA A E YES
LoFreq 24-013051-118_CATTLE_ARS-study NP 1294 A G 12727 7724 NA 0.0971 432 AAC GAC N D YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 177 T C 139 12853 NA 0.004746 59 CGT CGC R R NO
LoFreq 24-013051-118_CATTLE_ARS-study NS 191 T C 112 13366 NA 0.004414 64 ATA ACA I T YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 203 T C 207 13816 NA 0.005356 68 ATT ACT I T YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 214 G A 141 14132 NA 0.003397 72 GAA AAA E K YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 255 T C 110 14527 NA 0.002822 85 CCT CCC P P NO
LoFreq 24-013051-118_CATTLE_ARS-study NS 314 T C 78 16064 NA 0.003673 105 CTC CCC L P YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 462 A G 87 15687 NA 0.002996 154 GGA GGG G G NO
LoFreq 24-013051-118_CATTLE_ARS-study NS 631 A G 73 12834 NA 0.002571 211 AGA GGA R G YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 636 T C 141 12954 NA 0.003474 212 CCT CCC P P NO
LoFreq 24-013051-118_CATTLE_ARS-study NS 658 C T 78 12221 NA 0.0036 220 CGG TGG R W YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 664 A G 21202 12351 NA 0.12161 222 ATG GTG M V YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 724 A G 83 11735 NA 0.003153 242 ACA GCA T A YES
LoFreq 24-013051-118_CATTLE_ARS-study NS 801 A G 97 5686 NA 0.004221 267 GGA GGG G G NO
LoFreq 24-013051-118_CATTLE_ARS-study PA 802 C A 74 2998 NA 0.00567 268 CTC ATC L I YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 143 C A 19457 866 NA 0.851039 48 TCA TAA S * YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 145 T C 19379 870 NA 0.847126 49 TAC CAC Y H YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 147 C G 19251 868 NA 0.849078 49 TAC TAG Y * YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 149 G A 18729 881 NA 0.837684 50 AGG AAG R K YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 150 G C 18830 884 NA 0.839366 50 AGG AGC R S YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 289 G A 1206 1587 NA 0.056711 97 GGC AGC G S YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 919 C A 327 1997 NA 0.02003 307 CAC AAC H N YES
LoFreq 24-013051-118_CATTLE_ARS-study PB1 2086 G A 13108 3621 NA 0.178956 696 GTG ATG V M YES
GATK4 24-013051-118_CATTLE_ARS-study PB1 150 G C 33444.04 868 60 1 50 AGG AGC R S YES
LoFreq 24-013051-118_CATTLE_ARS-study PB2 600 T C 81 2686 NA 0.008191 200 CCT CCC P P NO
LoFreq 24-013051-118_CATTLE_ARS-study PB2 666 T C 159 2514 NA 0.011535 222 GGT GGC G G NO
LoFreq 24-013051-118_CATTLE_ARS-study PB2 1235 A G 150 2861 NA 0.016428 412 AAG AGG K R YES
LoFreq 24-013051-118_CATTLE_ARS-study PB2 1351 A G 101 3097 NA 0.009687 451 ATT GTT I V YES
LoFreq 24-013051-118_CATTLE_ARS-study PB2 1971 T C 91 2600 NA 0.006923 657 AAT AAC N N NO
LoFreq 24-013051-118_CATTLE_ARS-study PB2 2054 G A 116 2735 NA 0.008775 685 GGA GAA G E YES
LoFreq 24-013051-118_CATTLE_ARS-study HA_H5 204 A G 128 3210 NA 0.009034 68 TTA TTG L L NO
LoFreq 24-013051-118_CATTLE_ARS-study HA_H5 1052 T A 167 4716 NA 0.00933 351 ATA AAA I K YES
LoFreq 24-013051-118_CATTLE_ARS-study HA_H5 1296 A T 135 7101 NA 0.005492 432 GGA GGT G G NO
LoFreq 24-013051-118_CATTLE_ARS-study HA_H5 1350 G A 542 7102 NA 0.012391 450 GAG GAA E E NO
LoFreq 24-013051-118_CATTLE_ARS-study NA_N1 393 C T 1417 6494 NA 0.023868 131 ACC ACT T T NO
LoFreq 24-013051-118_CATTLE_ARS-study NA_N1 795 A G 226 6761 NA 0.008283 265 AAA AAG K K NO
LoFreq 24-013051-120_CATTLE_ARS-study MP 238 G A 380 15437 NA 0.005571 80 GTC ATC V I YES
LoFreq 24-013051-120_CATTLE_ARS-study MP 438 A G 145 18862 NA 0.003287 146 CTA CTG L L NO
LoFreq 24-013051-120_CATTLE_ARS-study MP 480 G C 75 18838 NA 0.002495 160 CGG CGC R R NO
LoFreq 24-013051-120_CATTLE_ARS-study MP 613 G A 76 18568 NA 0.002693 205 GTT ATT V I YES
LoFreq 24-013051-120_CATTLE_ARS-study MP 747 G A 164 16567 NA 0.004889 249 CAG CAA Q Q NO
LoFreq 24-013051-120_CATTLE_ARS-study MP 782 A G 136 16531 NA 0.005928 261 TAT TGT Y C YES
LoFreq 24-013051-120_CATTLE_ARS-study MP 813 T C 98 16058 NA 0.002865 271 GAT GAC D D NO
LoFreq 24-013051-120_CATTLE_ARS-study NP 565 A G 792 8784 NA 0.015255 189 ATG GTG M V YES
LoFreq 24-013051-120_CATTLE_ARS-study NP 1149 C T 38910 9457 NA 0.198054 383 AGC AGT S S NO
LoFreq 24-013051-120_CATTLE_ARS-study NP 1202 C A 183 8831 NA 0.006455 401 GCA GAA A E YES
LoFreq 24-013051-120_CATTLE_ARS-study NP 1294 A G 3987 8202 NA 0.042185 432 AAC GAC N D YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 197 A G 121 14100 NA 0.002979 66 GAG GGG E G YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 214 G A 242 14919 NA 0.004625 72 GAA AAA E K YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 462 A G 86 16332 NA 0.002694 154 GGA GGG G G NO
LoFreq 24-013051-120_CATTLE_ARS-study NS 515 A G 94 16010 NA 0.003123 172 GAG GGG E G YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 664 A G 28775 12748 NA 0.143709 222 ATG GTG M V YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 691 T C 66 12159 NA 0.002714 231 TGA CGA * R YES
LoFreq 24-013051-120_CATTLE_ARS-study NS 801 A G 99 5911 NA 0.00406 267 GGA GGG G G NO
LoFreq 24-013051-120_CATTLE_ARS-study PA 714 G A 200 2679 NA 0.011571 238 CCG CCA P P NO
LoFreq 24-013051-120_CATTLE_ARS-study PA 1061 T A 128 2773 NA 0.007934 354 ATT AAT I N YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 143 C A 17400 652 NA 0.972393 48 TCA TAA S * YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 145 T C 17019 652 NA 0.972393 49 TAC CAC Y H YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 147 C G 17142 653 NA 0.970904 49 TAC TAG Y * YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 149 G A 16777 654 NA 0.96789 50 AGG AAG R K YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 150 G C 17133 660 NA 0.971212 50 AGG AGC R S YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 919 C A 157 1822 NA 0.013172 307 CAC AAC H N YES
LoFreq 24-013051-120_CATTLE_ARS-study PB1 2086 G A 14734 3860 NA 0.189637 696 GTG ATG V M YES
GATK4 24-013051-120_CATTLE_ARS-study PB1 150 G C 31995.04 772 60 1 50 AGG AGC R S YES
LoFreq 24-013051-120_CATTLE_ARS-study PB2 666 T C 234 2323 NA 0.014636 222 GGT GGC G G NO
LoFreq 24-013051-120_CATTLE_ARS-study PB2 1351 A G 196 2869 NA 0.014639 451 ATT GTT I V YES
LoFreq 24-013051-120_CATTLE_ARS-study PB2 1971 T C 110 2566 NA 0.007794 657 AAT AAC N N NO
LoFreq 24-013051-120_CATTLE_ARS-study HA_H5 1052 T A 277 3309 NA 0.013599 351 ATA AAA I K YES
LoFreq 24-013051-120_CATTLE_ARS-study HA_H5 1120 G A 219 4124 NA 0.011397 374 GAG AAG E K YES
LoFreq 24-013051-120_CATTLE_ARS-study HA_H5 1296 A T 182 5861 NA 0.006995 432 GGA GGT G G NO
LoFreq 24-013051-120_CATTLE_ARS-study NA_N1 312 C T 236 5698 NA 0.008424 104 AAC AAT N N NO
LoFreq 24-013051-120_CATTLE_ARS-study NA_N1 393 C T 1042 6083 NA 0.020549 131 ACC ACT T T NO
LoFreq 24-013051-120_CATTLE_ARS-study NA_N1 742 A G 73 7281 NA 0.00467 248 AAT GAT N D YES
LoFreq 24-013051-120_CATTLE_ARS-study NA_N1 795 A G 164 6327 NA 0.006954 265 AAA AAG K K NO
LoFreq 24-013051-122_CATTLE_ARS-study MP 238 G A 399 15264 NA 0.005896 80 GTC ATC V I YES
LoFreq 24-013051-122_CATTLE_ARS-study MP 438 A G 92 17206 NA 0.002848 146 CTA CTG L L NO
LoFreq 24-013051-122_CATTLE_ARS-study MP 747 G A 120 16269 NA 0.004118 249 CAG CAA Q Q NO
LoFreq 24-013051-122_CATTLE_ARS-study MP 813 T C 86 15889 NA 0.002769 271 GAT GAC D D NO
LoFreq 24-013051-122_CATTLE_ARS-study NP 565 A G 397 7179 NA 0.012676 189 ATG GTG M V YES
LoFreq 24-013051-122_CATTLE_ARS-study NP 1149 C T 32442 8191 NA 0.193505 383 AGC AGT S S NO
LoFreq 24-013051-122_CATTLE_ARS-study NP 1202 C A 246 7938 NA 0.008566 401 GCA GAA A E YES
LoFreq 24-013051-122_CATTLE_ARS-study NP 1294 A G 3137 7716 NA 0.039787 432 AAC GAC N D YES
LoFreq 24-013051-122_CATTLE_ARS-study NS 197 A G 232 14113 NA 0.004393 66 GAG GGG E G YES
LoFreq 24-013051-122_CATTLE_ARS-study NS 214 G A 351 14767 NA 0.005621 72 GAA AAA E K YES
LoFreq 24-013051-122_CATTLE_ARS-study NS 462 A G 128 15300 NA 0.003464 154 GGA GGG G G NO
LoFreq 24-013051-122_CATTLE_ARS-study NS 664 A G 27023 12492 NA 0.144412 222 ATG GTG M V YES
LoFreq 24-013051-122_CATTLE_ARS-study PA 398 A G 68 1686 NA 0.008897 133 GAA GGA E G YES
LoFreq 24-013051-122_CATTLE_ARS-study PA 714 G A 332 1533 NA 0.023483 238 CCG CCA P P NO
LoFreq 24-013051-122_CATTLE_ARS-study PA 1061 T A 220 1631 NA 0.016554 354 ATT AAT I N YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 143 C A 10667 464 NA 0.868535 48 TCA TAA S * YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 145 T C 10600 465 NA 0.864516 49 TAC CAC Y H YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 147 C G 10568 466 NA 0.860515 49 TAC TAG Y * YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 149 G A 10234 471 NA 0.855626 50 AGG AAG R K YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 150 G C 10152 473 NA 0.854123 50 AGG AGC R S YES
LoFreq 24-013051-122_CATTLE_ARS-study PB1 2086 G A 13129 3289 NA 0.19702 696 GTG ATG V M YES
GATK4 24-013051-122_CATTLE_ARS-study PB1 150 G C 19792.04 503 60 1 50 AGG AGC R S YES
LoFreq 24-013051-122_CATTLE_ARS-study PB2 666 T C 80 1093 NA 0.012809 222 GGT GGC G G NO
LoFreq 24-013051-122_CATTLE_ARS-study HA_H5 1052 T A 559 2171 NA 0.027176 351 ATA AAA I K YES
LoFreq 24-013051-122_CATTLE_ARS-study HA_H5 1120 G A 332 3187 NA 0.017571 374 GAG AAG E K YES
LoFreq 24-013051-122_CATTLE_ARS-study HA_H5 1296 A T 259 5271 NA 0.009106 432 GGA GGT G G NO
LoFreq 24-013051-122_CATTLE_ARS-study NA_N1 312 C T 165 3757 NA 0.009316 104 AAC AAT N N NO
LoFreq 24-013051-122_CATTLE_ARS-study NA_N1 393 C T 377 3962 NA 0.015144 131 ACC ACT T T NO
LoFreq 24-013051-122_CATTLE_ARS-study NA_N1 795 A G 73 3903 NA 0.00538 265 AAA AAG K K NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 238 G A 510 15721 NA 0.006488 80 GTC ATC V I YES
LoFreq 24-013051-123_CATTLE_ARS-study MP 264 A G 90 16080 NA 0.002799 88 GGA GGG G G NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 438 A G 142 18530 NA 0.00313 146 CTA CTG L L NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 480 G C 115 18413 NA 0.002878 160 CGG CGC R R NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 613 G A 150 18413 NA 0.003584 205 GTT ATT V I YES
LoFreq 24-013051-123_CATTLE_ARS-study MP 747 G A 166 16977 NA 0.004359 249 CAG CAA Q Q NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 782 A G 88 16921 NA 0.00526 261 TAT TGT Y C YES
LoFreq 24-013051-123_CATTLE_ARS-study MP 813 T C 88 16457 NA 0.002674 271 GAT GAC D D NO
LoFreq 24-013051-123_CATTLE_ARS-study MP 825 T C 104 15781 NA 0.003168 275 CCT CCC P P NO
LoFreq 24-013051-123_CATTLE_ARS-study NP 565 A G 409 8228 NA 0.010695 189 ATG GTG M V YES
LoFreq 24-013051-123_CATTLE_ARS-study NP 1149 C T 36772 9015 NA 0.196118 383 AGC AGT S S NO
LoFreq 24-013051-123_CATTLE_ARS-study NP 1179 A G 81 8630 NA 0.003129 393 GGA GGG G G NO
LoFreq 24-013051-123_CATTLE_ARS-study NP 1202 C A 395 8507 NA 0.009286 401 GCA GAA A E YES
LoFreq 24-013051-123_CATTLE_ARS-study NP 1294 A G 4492 7992 NA 0.046421 432 AAC GAC N D YES
LoFreq 24-013051-123_CATTLE_ARS-study NS 214 G A 234 15194 NA 0.004212 72 GAA AAA E K YES
LoFreq 24-013051-123_CATTLE_ARS-study NS 462 A G 85 16316 NA 0.002758 154 GGA GGG G G NO
LoFreq 24-013051-123_CATTLE_ARS-study NS 664 A G 30154 12961 NA 0.146979 222 ATG GTG M V YES
LoFreq 24-013051-123_CATTLE_ARS-study NS 691 T C 75 12369 NA 0.002911 231 TGA CGA * R YES
LoFreq 24-013051-123_CATTLE_ARS-study PA 714 G A 268 2017 NA 0.016857 238 CCG CCA P P NO
LoFreq 24-013051-123_CATTLE_ARS-study PB1 143 C A 13931 553 NA 0.931284 48 TCA TAA S * YES
LoFreq 24-013051-123_CATTLE_ARS-study PB1 145 T C 13850 556 NA 0.928058 49 TAC CAC Y H YES
LoFreq 24-013051-123_CATTLE_ARS-study PB1 147 C G 13944 554 NA 0.933213 49 TAC TAG Y * YES
LoFreq 24-013051-123_CATTLE_ARS-study PB1 149 G A 13679 558 NA 0.930108 50 AGG AAG R K YES
LoFreq 24-013051-123_CATTLE_ARS-study PB1 150 G C 13678 560 NA 0.926786 50 AGG AGC R S YES
LoFreq 24-013051-123_CATTLE_ARS-study PB1 2086 G A 13510 3718 NA 0.181011 696 GTG ATG V M YES
GATK4 24-013051-123_CATTLE_ARS-study PB1 150 G C 25722.04 625 60 1 50 AGG AGC R S YES
LoFreq 24-013051-123_CATTLE_ARS-study PB2 666 T C 111 1482 NA 0.012821 222 GGT GGC G G NO
LoFreq 24-013051-123_CATTLE_ARS-study PB2 1351 A G 223 1883 NA 0.018056 451 ATT GTT I V YES
LoFreq 24-013051-123_CATTLE_ARS-study HA_H5 204 A G 123 1822 NA 0.010977 68 TTA TTG L L NO
LoFreq 24-013051-123_CATTLE_ARS-study HA_H5 1052 T A 375 2613 NA 0.018752 351 ATA AAA I K YES
LoFreq 24-013051-123_CATTLE_ARS-study HA_H5 1120 G A 208 3494 NA 0.012021 374 GAG AAG E K YES
LoFreq 24-013051-123_CATTLE_ARS-study HA_H5 1296 A T 121 5659 NA 0.005301 432 GGA GGT G G NO
LoFreq 24-013051-123_CATTLE_ARS-study NA_N1 312 C T 68 4027 NA 0.005711 104 AAC AAT N N NO
LoFreq 24-013051-123_CATTLE_ARS-study NA_N1 393 C T 486 4278 NA 0.016597 131 ACC ACT T T NO
LoFreq 24-013051-123_CATTLE_ARS-study NA_N1 795 A G 93 4427 NA 0.006551 265 AAA AAG K K NO
LoFreq 24-013051-125_CATTLE_ARS-study MP 238 G A 415 14379 NA 0.006329 80 GTC ATC V I YES
LoFreq 24-013051-125_CATTLE_ARS-study MP 480 G C 124 16933 NA 0.003307 160 CGG CGC R R NO
LoFreq 24-013051-125_CATTLE_ARS-study MP 613 G A 83 16777 NA 0.00304 205 GTT ATT V I YES
LoFreq 24-013051-125_CATTLE_ARS-study MP 747 G A 111 15581 NA 0.004108 249 CAG CAA Q Q NO
LoFreq 24-013051-125_CATTLE_ARS-study NP 565 A G 367 7929 NA 0.011351 189 ATG GTG M V YES
LoFreq 24-013051-125_CATTLE_ARS-study NP 822 C A 73 7365 NA 0.004888 274 TCC TCA S S NO