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curated_amino_acids.txt
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curated_amino_acids.txt
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aa_position method sample locus position reference alternative quality depth map_quality allele_frequency reference_codon alternative_codon reference_aa alternative_aa aa_changing Gene Type
139 LoFreq 24-013051-130_CATTLE_ARS-study MP 417 C T 1946 20090 NA 0.013041 ACC ACT T T NO MP virulence
139 LoFreq 24-013051-129_CATTLE_ARS-study MP 415 A G 584 17142 NA 0.007525 ACC GCC T A YES MP virulence
207 LoFreq 24-013051-118_CATTLE_ARS-study MP 621 T C 80 17980 NA 0.002725 AGT AGC S S NO MP virulence
207 LoFreq 24-013051-132_CATTLE_ARS-study MP 620 G A 108 18809 NA 0.002658 AGT AAT S N YES MP virulence
207 LoFreq 24-017496-009-v_CATTLE_UNK_ARS-Study_IA MP 619 A G 129 13645 NA 0.003444 AGT GGT S G YES MP virulence
207 LoFreq 24-017496-010-v_CATTLE_UNK_ARS-Study_IA MP 619 A G 299 13110 NA 0.005645 AGT GGT S G YES MP virulence
207 LoFreq 24-013539-083_CATTLE_UNK_ARS-study MP 620 G A 93 14299 NA 0.002937 AGT AAT S N YES MP virulence
207 LoFreq 24-013252-093_CATTLE_UNK_ARS-study MP 619 A G 82 14414 NA 0.003122 AGT GGT S G YES MP virulence
215 LoFreq 24-013539-064_CATTLE_UNK_ARS-study MP 645 G A 301 16711 NA 0.004787 GCG GCA A A NO MP virulence
91 LoFreq 24-013051-130_CATTLE_ARS-study NS 272 C A 1252 16073 NA 0.011945 ACT AAT T N YES NS pathogenicity
91 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 271 A G 88 18723 NA 0.006356 ACT GCT T A YES NS pathogenicity
92 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 276 C A 1230 18517 NA 0.010261 GAC GAA D E YES NS pathogenicity
92 LoFreq 24-013539-062_CATTLE_UNK_ARS-study NS 276 C A 73 19614 NA 0.002447 GAC GAA D E YES NS pathogenicity
92 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 274 G A 609 18610 NA 0.007845 GAC AAC D N YES NS pathogenicity
93 LoFreq 24-013051-129_CATTLE_ARS-study NS 277 A G 164 15462 NA 0.004527 ATG GTG M V YES NS pathogenicity
93 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 279 G A 180 18470 NA 0.004061 ATG ATA M I YES NS pathogenicity
94 LoFreq 24-013539-060_CATTLE_UNK_ARS-study NS 280 A G 936 18139 NA 0.008766 ACT GCT T A YES NS pathogenicity
94 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 281 C A 77 18563 NA 0.003286 ACT AAT T N YES NS pathogenicity
95 LoFreq 24-013539-060_CATTLE_UNK_ARS-study NS 284 T C 674 18277 NA 0.012311 CTT CCT L P YES NS pathogenicity
99 LoFreq 24-013051-130_CATTLE_ARS-study NS 295 T C 298 16393 NA 0.004636 TCA CCA S P YES NS virulence
99 LoFreq 24-013539-079_CATTLE_UNK_ARS-study NS 295 T C 106 16120 NA 0.002978 TCA CCA S P YES NS virulence
99 LoFreq 24-012590-038_CATTLE_ARS-study NS 295 T C 507 12127 NA 0.007339 TCA CCA S P YES NS virulence
99 LoFreq 24-013539-078_CATTLE_UNK_ARS-study NS 295 T C 114 16739 NA 0.002808 TCA CCA S P YES NS virulence
99 LoFreq 24-012590-023_CATTLE_ARS-study NS 295 T C 84 13959 NA 0.002507 TCA CCA S P YES NS virulence
99 LoFreq 24-013539-074_CATTLE_UNK_ARS-study NS 295 T C 124 22607 NA 0.002698 TCA CCA S P YES NS virulence
99 LoFreq 24-013539-068_CATTLE_UNK_ARS-study NS 295 T C 76 15233 NA 0.00256 TCA CCA S P YES NS virulence
101 LoFreq 24-012590-023_CATTLE_ARS-study NS 302 A G 86 13921 NA 0.010344 GAC GGC D G YES NS virulence
101 LoFreq 24-013252-081_CATTLE_UNK_ARS-study NS 303 C T 209 11563 NA 0.004843 GAC GAT D D NO NS virulence
101 LoFreq 24-013539-062_CATTLE_UNK_ARS-study NS 301 G A 78 20176 NA 0.00223 GAC AAC D N YES NS virulence
101 LoFreq 24-013539-076_CATTLE_UNK_ARS-study NS 301 G A 716 9089 NA 0.011442 GAC AAC D N YES NS virulence
101 LoFreq 24-013539-064_CATTLE_UNK_ARS-study NS 303 C T 585 18788 NA 0.006494 GAC GAT D D NO NS virulence
103 LoFreq 24-013539-076_CATTLE_UNK_ARS-study NS 308 T C 375 9150 NA 0.009617 TTC TCC F S YES NS human-adaptation
103 LoFreq 24-013051-011_CATTLE_ARS-study NS 308 T C 82 16583 NA 0.003498 TTC TCC F S YES NS human-adaptation
125 LoFreq 24-013539-076_CATTLE_UNK_ARS-study NS 375 T C 99 9219 NA 0.004556 GAT GAC D D NO NS pathogenicity
125 LoFreq 24-013051-129_CATTLE_ARS-study NS 373 G A 4980 16764 NA 0.028633 GAT AAT D N YES NS pathogenicity
125 LoFreq 24-013539-062_CATTLE_UNK_ARS-study NS 373 G A 180 20042 NA 0.004491 GAT AAT D N YES NS pathogenicity
622 LoFreq 24-013252-081_CATTLE_UNK_ARS-study PB1 1865 G A 94 355 NA 0.028169 CGA CAA R Q YES PB1 virulence
631 LoFreq 24-013051-071_CATTLE_ARS-study PB2 1892 T C 137 4149 NA 0.007713 CTG CCG L P YES PB2 mammal-adaptation