diff --git a/.gitignore b/.gitignore
index 160cee7..7ad1e1b 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,8 @@
 *.nhr
 *.nin
 *.nsq
+*.fasta
+*.clean
+*Final_Output.txt
+*_output/
+*.fna