diff --git a/README.md b/README.md index 7540013..b0a5367 100644 --- a/README.md +++ b/README.md @@ -6,6 +6,9 @@ [![Docker Automated build](https://img.shields.io/docker/cloud/build/flucrew/octoflu.svg)](https://hub.docker.com/r/flucrew/octoflu/) [![DockerHub Pulls](https://img.shields.io/docker/pulls/flucrew/octoflu.svg)](https://hub.docker.com/r/flucrew/octoflu/) +## UPDATE May 2021 +Reference database has been updated to include N2 clade names (i.e., 2002A vs 2002B; 1998A vs 1998B). [See Zeller et al. Coordinated evolution between N2 neuraminidase and H1 and H3 hemagglutinin genes increased influenza A virus genetic diversity in swine.](https://www.biorxiv.org/content/10.1101/2020.05.29.123828v1) + ## Use Determines evolutionary origin of influenza A virus genes through inference of maximum likelihood tree and then assignment of a defined genetic clade based on nearest neighbor determined by patristic distances. diff --git a/reference_data/reference.fa b/reference_data/reference.fa index e8d0c53..c861fe1 100644 --- a/reference_data/reference.fa +++ b/reference_data/reference.fa @@ -9861,7 +9861,7 @@ TTTGGGATCCAAATGGGTGGACTGAAACTGATAGTAGTTTCTCTATGAAGCAGGACATTATAGCATTGAATGATTGGTCA GGATACAGTGGAAGTTTTGTCCAACATCCTGAATTAACAGGAATGAATTGCATAAGGCCTTGTTTCTGGGTGGAATTAAT CAGAGGGCAACCCAAGGAAAGCACAATCTGGGCTAGCGGAAGCAGCATCTCTTTCTGTGGCGTAAATAGTGAAACCGCAA GCTGGTCATGGCCAGACGGAGCTGATCTGCCATTCACCATTGACAAGTAG ->1998|AF455696|A/Swine/Indiana/P12439/00|H1N2|N2|USA|Indiana|1A.3.3|2000 +>1998A|AF455696|A/Swine/Indiana/P12439/00|H1N2|N2|USA|Indiana|1A.3.3|2000 ATGAATCCAAATCAACAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAATATGAATGCAACTCCCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -9880,7 +9880,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGATGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTAGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCCCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAG ->1998|CY041905|A/swine/Minnesota/SG_00239/2007|H1N2|N2|USA|Minnesota|1B.2.2|2/23/07 +>1998A|CY041905|A/swine/Minnesota/SG_00239/2007|H1N2|N2|USA|Minnesota|1B.2.2|2/23/07 ATGAATCCAAATAAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATCGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAAAATTGCATTTCAAGCAATATGAATGCAATTCCCCTC---CAAACAACCAAGTAATACTGT GTGAACCAACTATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAATACCACCATAGAGAAGGAAATATGCCCC @@ -9918,7 +9918,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|CY116568|A/swine/Wisconsin/H02AS8/2002|H3N2|N2|USA|Wisconsin|3.1990.4|2002 +>1998A|CY116568|A/swine/Wisconsin/H02AS8/2002|H3N2|N2|USA|Wisconsin|3.1990.4|2002 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTCATGCAAATTGC CATCCTGGTAACTACTGTGACATTGCATTTCAAGCAATATGAATGCAACTCCCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -9937,7 +9937,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGGCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAAATGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGAACATCAATTTCATGCCTATATAA ->1998|CY157641|A/swine/Oklahoma/00141/2003|H3N2|N2|USA|Oklahoma|3.1990.4|8/28/03 +>1998A|CY157641|A/swine/Oklahoma/00141/2003|H3N2|N2|USA|Oklahoma|3.1990.4|8/28/03 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTTACTATTGCCACACTGTGCTTCATTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAATATGAATGCAACTCCCCCC---CAAACAACCAAGTAATACTAT GTGAACCAACTATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -9956,7 +9956,7 @@ GATATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGGTGATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|CY157681|A/swine/Nebraska/SG1178/2003|H3N2|N2|USA|Nebraska|3.1990.4|8/6/03 +>1998B|CY157681|A/swine/Nebraska/SG1178/2003|H3N2|N2|USA|Nebraska|3.1990.4|8/6/03 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -9975,7 +9975,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGGTGATAGGTCCGGTTATTCAGGCATTTTCTCTGTTGAAGGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTTTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|CY157761|A/swine/Kansas/00246/2004|H1N2|N2|USA|Kansas|1A.3.3.3|2/5/04 +>1998B|CY157761|A/swine/Kansas/00246/2004|H1N2|N2|USA|Kansas|1A.3.3.3|2/5/04 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCATTTCAAGCAATATGTATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -9994,7 +9994,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AAAGATGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|CY242886|A/swine/Indiana/16TOSU4367/2016|H1N2|N2|USA|Indiana|1B.2.1|7/1/16 +>1998B|CY242886|A/swine/Indiana/16TOSU4367/2016|H1N2|N2|USA|Indiana|1B.2.1|7/1/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTACACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10013,7 +10013,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAGAGCAAAAGCTGTATCAATCGTTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|HM461852|A/swine/Texas/01976/2008|H1N2|N2|USA|Texas|1B.2.2|2008 +>1998A|HM461852|A/swine/Texas/01976/2008|H1N2|N2|USA|Texas|1B.2.2|2008 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTATTGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACACTGCATTTCAAGCAATATGAATGCAGCTCCCCAC---CAAACAACCAAGTAATGCTGT GTGAACCAACTATTATAGAAAGAAACATAACAGAGGTAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10032,7 +10032,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGATGATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|JQ398771|A/swine/North_Carolina/A01048807/2011|H1N2|N2|USA|North_Carolina|1B.2.1|11/15/11 +>1998B|JQ398771|A/swine/North_Carolina/A01048807/2011|H1N2|N2|USA|North_Carolina|1B.2.1|11/15/11 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTTACCCTTGCCACAATGTGCTTCCTTATGCAGATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10051,7 +10051,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTGTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|JQ689142|A/swine/Nebraska/A01104010/2011|H3N2|N2|USA|Nebraska|3.1990.4.7|12/5/11 +>1998A|JQ689142|A/swine/Nebraska/A01104010/2011|H3N2|N2|USA|Nebraska|3.1990.4.7|12/5/11 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTATTGCCACAATGTGCTTCATTATGCAAATTGC CATTCTTGTAACTACTGTAACACTGCATTTCAAGCAATATGAATGCAGCTCCCCAC---CAAACAACCAAGTAATGCTGT GTGAACCAACTATTATAGAAAGAAACATAACAGAGGTGGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10070,7 +10070,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGACAATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->1998|JX048045|A/swine/North_Carolina/A01076202/2010|H1N2|N2|USA|North_Carolina|1B.2.1|3/28/10 +>1998B|JX048045|A/swine/North_Carolina/A01076202/2010|H1N2|N2|USA|North_Carolina|1B.2.1|3/28/10 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTTACTATTGCCACAATGTGCTTCCTTACGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -10089,7 +10089,7 @@ GCTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAGAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|JX092592|A/swine/Iowa/A01203121/2012|H3N2|N2|USA|Iowa|3.1990.4.7|1/5/12 +>1998A|JX092592|A/swine/Iowa/A01203121/2012|H3N2|N2|USA|Iowa|3.1990.4.7|1/5/12 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTATTGCCACAATGTGCTTCATTATGCAAATTGC CATTCTTGTAACTACTGTAACACTGCATTTCAAGCAATATGAATGCAGCTCCCCAC---CAAACAACCAAGTAATGCTGT GTGAACCAACTATTATAGAAAGAAACATAACAGAGGTAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10108,7 +10108,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGATAATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->1998|JX658777|A/swine/Colorado/A01203748/2012|H3N2|N2|USA|Colorado|3.1990.4|8/13/12 +>1998A|JX658777|A/swine/Colorado/A01203748/2012|H3N2|N2|USA|Colorado|3.1990.4|8/13/12 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCTTCCTTACACAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGTATGAATGCAACTCCCTAT---CAAACAACCAAGTAATAATGT GTGAACCAACTATAGTAGAAAGAAACATAACAGAGATAGTGTATCTGAACAACACCATCATAGAGAAAGAAGTATGCACC @@ -10127,7 +10127,7 @@ GTTATGAAACTTTCAAGGTCATTGAAGGCTGGTCCAAGCCTAACTCCAAACTACAGATAAATAGGCAAGTCATAGTTGAC GAAGATAATAGGTCCGGTTATTCCGGTATTTTCTCTGTTGAACTCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACGGGAAACTGAAGTCTGGTGGACCTCGAACAGCATTGTTGTGTTTTGTGGCACATCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTTATGCCGATATAA ->1998|KC508598|A/swine/Michigan/A01259001/2012|H1N2|N2|USA|Michigan|1B.2.1|9/27/12 +>1998B|KC508598|A/swine/Michigan/A01259001/2012|H1N2|N2|USA|Michigan|1B.2.1|9/27/12 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTTACTATTGCCACAATGTGTTTCCTTATGCAAATTGC CATCCTGATAACTAATGTAACATTGCACTTCAATCAGTATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10146,7 +10146,7 @@ GTTATGAAACCTTCAAAGTCATTAAAGGCTGGTCCAAACCTAATTCCAAATCGCAGATAAATAGGCAAGTCATAGTTGAA AGAGGTGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGGAAAAGCTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACGTCAAACAGCATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KF735651|A/swine/Minnesota/A01392534/2013|H3N2|N2|USA|Minnesota|3.1990.4.7|10/3/13 +>1998A|KF735651|A/swine/Minnesota/A01392534/2013|H3N2|N2|USA|Minnesota|3.1990.4.7|10/3/13 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTATTGCCACAATGTGCTTCATTATGCAAATTGC CATTCTTGTAACTACTGTAACACTGCATTTCAAGCAATATGAATGCAGCTCCCCAC---CAAACAACCAAGTAGTGCTGT GTGAACCAACTATTGTAGAAAGGAACATAACAGAGGTAGTGTATCTGACCAACACCACCATAGAGAAGGAAGTATGCCCC @@ -10165,7 +10165,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGACAATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGTAAGAGCTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAACAGGAAGCTGAAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->1998|KF791369|A/swine/North_Carolina/A01290598/2013|H1N2|N2|USA|North_Carolina|1B.2.1|13-Oct +>1998B|KF791369|A/swine/North_Carolina/A01290598/2013|H1N2|N2|USA|North_Carolina|1B.2.1|13-Oct ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACACTGCACTTCAATCAATGTGAATGCAACTACCCCC---CAAACAACCAAGTGATACTGT GTGAACCAACAATAATAGAAAGGAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10184,7 +10184,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAACAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KF922820|A/swine/North_Carolina/A01290741/2013|H1N2|N2|USA|North_Carolina|1B.2.1|13-Nov +>1998B|KF922820|A/swine/North_Carolina/A01290741/2013|H1N2|N2|USA|North_Carolina|1B.2.1|13-Nov ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCCTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAGTATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAAAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10203,7 +10203,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGATGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGAAAAAGCTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACGTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KJ437590|A/swine/Oklahoma/A01409770/2014|H1N2|N2|USA|Oklahoma|1B.2.1|14-Jan +>1998B|KJ437590|A/swine/Oklahoma/A01409770/2014|H1N2|N2|USA|Oklahoma|1B.2.1|14-Jan ATGAATCCAAATCAAAAGATAATAACGATTGGGTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAATGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10222,7 +10222,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KJ739384|A/swine/North_Carolina/A01410522/2014|H1N2|N2|USA|North_Carolina|1B.2.1|14-Mar +>1998B|KJ739384|A/swine/North_Carolina/A01410522/2014|H1N2|N2|USA|North_Carolina|1B.2.1|14-Mar ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10241,7 +10241,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGTTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KM402859|A/swine/North_Carolina/A01411888/2014|H1N2|N2|USA|North_Carolina|1B.2.1|7/23/14 +>1998B|KM402859|A/swine/North_Carolina/A01411888/2014|H1N2|N2|USA|North_Carolina|1B.2.1|7/23/14 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAATCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10260,7 +10260,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAGGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KP288053|A/swine/North_Carolina/A01477834/2014|H1N2|N2|USA|North_Carolina|1B.2.1|11/7/14 +>1998B|KP288053|A/swine/North_Carolina/A01477834/2014|H1N2|N2|USA|North_Carolina|1B.2.1|11/7/14 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACTCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAATCAAGCAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACAAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10279,7 +10279,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAGGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KP691530|A/swine/Kansas/14_032475/2014|H1N2|N2|USA|Kansas|1B.2.1|12/10/14 +>1998B|KP691530|A/swine/Kansas/14_032475/2014|H1N2|N2|USA|Kansas|1B.2.1|12/10/14 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCCTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTCCAATCAGTATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAAAAAGAAACATAACAGAGATAGTGTATCTGGCCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10298,7 +10298,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGATGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGAAAAATTTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACGTCAAATAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KR065753|A/swine/North_Carolina/A01840982/2015|H1N2|N2|USA|North_Carolina|1B.2.1|3/11/15 +>1998B|KR065753|A/swine/North_Carolina/A01840982/2015|H1N2|N2|USA|North_Carolina|1B.2.1|3/11/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCCTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTCCAATCAGTATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAAAAAGAAACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10317,7 +10317,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGATGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGAAAAAGCTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACGTCAAATAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KR150944|A/swine/North_Carolina/A01841710/2015|H1N2|N2|USA|North_Carolina|1B.2.1|3/20/15 +>1998B|KR150944|A/swine/North_Carolina/A01841710/2015|H1N2|N2|USA|North_Carolina|1B.2.1|3/20/15 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAACTGT CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10336,7 +10336,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGTTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAAGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAACTGCAGTATGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KR859496|A/swine/Colorado/00294/2004|H3N2|N2|USA|Colorado|3.1990.4|2004 +>1998A|KR859496|A/swine/Colorado/00294/2004|H3N2|N2|USA|Colorado|3.1990.4|2004 ATGAATCCAAATAAAAAGATAATAACGATTGGCTCTGTTTCTCTCACTATCGCCACAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAATATGAATGCAATTCCCCTC---CAAACAACCAAGTAATACTGT GTGAACCAACTATAATAGAAAGAAACATAACAGAGATAGTGTATCTGACCAATACCACCATAGAGAAGGAAATATGCCCC @@ -10355,7 +10355,7 @@ GTTATGAAACCTTTAAAGTCATTGAAGGCTGGTCCAGACCTAACTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAC AGAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTATATAA ->1998|KU242672|A/swine/North_Carolina/A01795838/2015|H1N2|N2|USA|North_Carolina|1B.2.1|11/5/15 +>1998B|KU242672|A/swine/North_Carolina/A01795838/2015|H1N2|N2|USA|North_Carolina|1B.2.1|11/5/15 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTGATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10374,7 +10374,7 @@ GTTATGAAACTTTCAAAGTAATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCCTGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KU598294|A/swine/Indiana/A01729197/2016|H1N2|N2|USA|Indiana|1B.2.1|1/7/16 +>1998B|KU598294|A/swine/Indiana/A01729197/2016|H1N2|N2|USA|Indiana|1B.2.1|1/7/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCCTCCTTATGCAAATTGC CATACTGATAACTAATGTAACATTGCACTCCAATCAGTATGAATGCAACTACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAAAAAGAAACATAACAGAGATAGTGTATCTGGCCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10393,7 +10393,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGATGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGAAAAAGCTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTGTGGTGGACGTCAAATAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KX151035|A/swine/Illinois/A01377924/2016|H1N2|N2|USA|Illinois|1B.2.1|4/11/16 +>1998B|KX151035|A/swine/Illinois/A01377924/2016|H1N2|N2|USA|Illinois|1B.2.1|4/11/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACTATTGCCACAATGTGCCTCCTTATGCAAATTAC CATCCTGGTAACTAATGTAACATTGCACTCCAATCAGTATGAATGCAACCACCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAAAAAGAAACATAACAGAGATAGTGTATCTGGCCAACACCACCATAGAGAAGGAAATGTGCCCC @@ -10412,7 +10412,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AGAGATGATAGGTCCGGTTATTCTGGAATTTTCTCTGTTGAAGGAAAAAGCTGTATCAATCGGTGTTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACGTCAAATAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATAA ->1998|KX255806|A/swine/Iowa/A01895385/2016|H1N2|N2|USA|Iowa|1B.2.2.2|4/12/16 +>1998A|KX255806|A/swine/Iowa/A01895385/2016|H1N2|N2|USA|Iowa|1B.2.2.2|4/12/16 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTGTTGCCACAATGTGCTTCATTATGCAAATTGC CATTCTTGTAACTACTGTAACACAGCATTTCAAGCAATATGAATGCAGCTCCCCAC---CAAACAACCAAGTAATGCTGT GTGAACCAACTATTATAGAAAGAAACATAACAGAGATGGTGTATCTGACCAATACCACCATAGAGAAGGAAATATGCCCC @@ -10431,7 +10431,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGACAATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAAGCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAAGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->1998|KY210993|A/swine/North_Carolina/A01782869/2016|H1N2|N2|USA|North_Carolina|1B.2.1|10/27/16 +>1998B|KY210993|A/swine/North_Carolina/A01782869/2016|H1N2|N2|USA|North_Carolina|1B.2.1|10/27/16 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCATTGCCGCAATGTGCTTCCTTATGCAAACTGC CATTCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGTAATACTTT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10450,7 +10450,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGTTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAG AAAAGTAATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAACTGCAGTATGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|KY593242|A/swine/North_Carolina/A01672102/2017|H1N2|N2|USA|North_Carolina|1B.2.1|1/10/17 +>1998B|KY593242|A/swine/North_Carolina/A01672102/2017|H1N2|N2|USA|North_Carolina|1B.2.1|1/10/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTAGTAACTAATGTAACATTGCAATTCAATCAATGTGAATGCCACTATCCTC---CAAACAATCAAGTAACACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAAATAATGTATCTGACCAACACCACCATAGAGAAAGAAAAATGCCCC @@ -10469,7 +10469,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAG AAAGGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGTAGTGTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|MF092762|A/swine/North_Carolina/A02214480/2017|H1N2|N2|USA|North_Carolina|1B.2.1|4/7/17 +>1998B|MF092762|A/swine/North_Carolina/A02214480/2017|H1N2|N2|USA|North_Carolina|1B.2.1|4/7/17 ATGAATCCAAATCAAAAGATAATGACGATTGGCTCTATTTCTCTTACTCTTGCCGCAATGTGCTTCCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTACACTTCAATCAATGTGAATACCACTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10488,7 +10488,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAAAAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAGAGCAAAAGCTGTATCAATCGTTGCTTTTATGTGGAGTT GATCAGAGGAAGGAAACAGGAATCTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|MF375250|A/swine/Illinois/A02216460/2017|H1N2|N2|USA|Illinois|1B.2.2.2|5/24/17 +>1998A|MF375250|A/swine/Illinois/A02216460/2017|H1N2|N2|USA|Illinois|1B.2.2.2|5/24/17 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTGCTTCTCTCACTATTGCCACAATTTGCTTCATTATGCAAATTGT CATTCTTGTAACTACTGTAACACTGCATTTCAATCAATATGAGTGCAGTTCCCCAC---CAAACAACCAAGTAATGCTGT GTGAACCAACTATTATAGAAAGAAACATAACAGAGGTGGTGTATCTAACCAATACCACCATAAAGAAGGAAATATGCCCC @@ -10507,7 +10507,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGATGGTCCAAACCTAACTCCAAATTGCAGATAAATAGGCAAGTTATAGTTGAC AGAGACAATAGGTCCGGTTATTCTGGCATCTTCTCTGTTGAAGGCAAGAGCTGCATCAACCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAAGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->1998|MG266080|A/swine/Colorado/A01785307/2017|H1N2|N2|USA|Colorado|1B.2.2.1|10/3/17 +>1998A|MG266080|A/swine/Colorado/A01785307/2017|H1N2|N2|USA|Colorado|1B.2.2.1|10/3/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTCACTATTGCCATAATGTGCTTCATCACACAAGTTGC CATCCTGGTAACTACTGTGACATTGCATTTCAAGCAGTATGAATGTAACTCCCTAT---CAAACAACCAAGTAATAATGT GTGAACCAACTGTAGTAGGAAGAAACATAACAGAGATAGTGTATCTGAACAACACCATTGTAGAGAAAGAAATATGCACC @@ -10526,7 +10526,7 @@ GTTATGAAACTTTCAAGGTCATTGAAGGCTGGTCCAAGCCTAACTCCAAACTACAGACAAATAGGCAAGTCATAGTTGAC AAAGATAATAGGTCCGGTTATTCAGGTATTTTCTCTGTTGAAGTCAAGAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACGGGAAACTGAAGTCTGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGTACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTTATGCCGATATAA ->1998|MG279539|A/swine/North_Carolina/A02223101/2017|H1N2|N2|USA|North_Carolina|1B.2.1|10/2/17 +>1998B|MG279539|A/swine/North_Carolina/A02223101/2017|H1N2|N2|USA|North_Carolina|1B.2.1|10/2/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCCCTTACCATTGCCGCAATGTGCTTCCTTATGCAAACTGC CATTCTGGTAACTAATGTAACATTGCACTTTAATCAATGTGAATGCCANTATCCCC---CAAACAACCAAGTAATACTTT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10545,7 +10545,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGTTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAG AAAAGTAATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGTTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAACTGCAGTATGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|MG763252|A/swine/North_Carolina/A02137106/2017|H1N2|N2|USA|North_Carolina|1B.2.1|11/30/17 +>1998B|MG763252|A/swine/North_Carolina/A02137106/2017|H1N2|N2|USA|North_Carolina|1B.2.1|11/30/17 ATGAATCCAAATCAAAAGATAATAACGATTGGTTCTATTTCTCTCACCCTGGCTGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACGTTGCACTTCAATCAGTATGAGTGCCACTATCCCC---CAAACAACCAAGCAACACTGT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10564,7 +10564,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAAGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAGGCAAAAGCTGTATCAATCGGTGTTTCTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAACTGCAGTATGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGCACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|MG822877|A/swine/Pennsylvania/A02138663/2017|H1N2|N2|USA|Pennsylvania|1B.2.1|12/12/17 +>1998B|MG822877|A/swine/Pennsylvania/A02138663/2017|H1N2|N2|USA|Pennsylvania|1B.2.1|12/12/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAGCACTGCAATTCAATCAATGTGAATGCCACTATCCCC---CAAACAACCAAGCAACACTGT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10583,7 +10583,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATGAATAGGCAAGTCATAGTTGAA AAAGATGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAACAGGAAACTGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACCTCGGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATCAATCTCATGCCTGTATGA ->1998|MG822895|A/swine/North_Carolina/A02138766/2017|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|12/8/17 +>1998B|MG822895|A/swine/North_Carolina/A02138766/2017|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|12/8/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTTCTTATGCAAATTGC CATCCTGGTAACTAATGTAACATTGCATCCCAATCAATGTGAATACCACTATCCCC---CAAACAACCAAGTAGTACTGT GTGAACCAACAATAACAGAAAGAAACATAACAAAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10602,7 +10602,7 @@ GTTATGAAACCTTCAAAGTAATTGAGGGCTGGTCCAAATCTAATTCCAAATTGCAGATCAATAGGCAAGTCATAGTTGAA AAAGGTGATAGGTCCGGTTATTCTGGTATTTTCTCAGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTTGAGTT GATAAGAGGAAGGAAACAGGAAACCACAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGAACCTCGGGCACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGACATTAATCTCATGCCTGTATGA ->1998|MG870275|A/swine/Iowa/A02138920/2017|H1N2|N2|USA|Iowa|1B.2.1|12/19/17 +>1998B|MG870275|A/swine/Iowa/A02138920/2017|H1N2|N2|USA|Iowa|1B.2.1|12/19/17 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTCCTTATGCAGACTGC CATTCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCATTATCCCC---CAAACAACCAAGTAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACAAGGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10621,7 +10621,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAATCTAATTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGAA AAAAGTGATAGGTCCGGTTATTCTGGCATTTTCTCTGTTGAAAGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGAGGAAGAAAACAGGAAAATGCAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACCTCGGGTACAT ATGGATCAGGCTCATGGCCTGATGGGGCGGACATCAGTCTCATGCCTGTATGA ->1998|MH279980|A/swine/Missouri/A01785503/2018|H1N2|N2|USA|Missouri|1B.2.1|4/11/18 +>1998B|MH279980|A/swine/Missouri/A01785503/2018|H1N2|N2|USA|Missouri|1B.2.1|4/11/18 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTATTTCTCTTACCCTTGCCGCAATGTGCTTCCTTATGCAAACTGC CATTCTGGTAACTAATGTAACATTGCACTTCAATCAATGTGAATGCCATTATCCCC---CAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAAGGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -10678,7 +10678,7 @@ GTTATGAAACCTTCAAAGTCATCGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|CY099209|A/swine/Minnesota/02324/2008|H1N2|N2|USA|Minnesota|1B.2.2.1|9/10/08 +>2002A|CY099209|A/swine/Minnesota/02324/2008|H1N2|N2|USA|Minnesota|1B.2.2.1|9/10/08 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCAGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTTGTAACTACTGTAACATTGCATTTCAAGCAGCATGACCACAACTCCCCCC---CAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10735,7 +10735,7 @@ GTTATGAAACCTTCAAAGTCATCGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTAAA AGAGATAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGGAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|CY194671|A/swine/Manitoba/D0241/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|6/19/13 +>2002B|CY194671|A/swine/Manitoba/D0241/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|6/19/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTGCAACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATATGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -10754,7 +10754,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAGGTTATAGTTGAA GAAGATAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|CY194775|A/swine/Manitoba/D0266/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|8/28/13 +>2002B|CY194775|A/swine/Manitoba/D0266/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|8/28/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTGCAACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -10773,7 +10773,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAGGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|CY194895|A/swine/Manitoba/D0280/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|10/10/13 +>2002B|CY194895|A/swine/Manitoba/D0280/2013|H3N2|N2|Canada|Manitoba|3.1990.4.2-3|10/10/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -10830,7 +10830,7 @@ GTTATGAAACCTTCAAAGTCATTAAAGGATGGTCCATACCTAACTCTAAATTACAGACAAATAGACAAGTCATCGTTAAG AGTGATGACAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGGAGAAAAGAGGAAACTAAAGTCTGGTGGACATCAAACAGTATTGTTGTGTTTTGTGGTACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATATCATGCCTATATAA ->2002|CY246502|A/swine/Manitoba/D0456/2016|H1N2|N2|Canada|Manitoba|1A.1.1|9/2/16 +>2002B|CY246502|A/swine/Manitoba/D0456/2016|H1N2|N2|Canada|Manitoba|1A.1.1|9/2/16 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTACAACTCCTCCT---TAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACAACTGTAGAGAAGGAAATATGCCCC @@ -10887,7 +10887,7 @@ GTTATGAAACCTTCAAAGTCATCGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JN162016|A/swine/Minnesota/A01049346/2010|H3N2|N2|USA|Minnesota|3.1990.4.2-3|12/29/10 +>2002B|JN162016|A/swine/Minnesota/A01049346/2010|H3N2|N2|USA|Minnesota|3.1990.4.2-3|12/29/10 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACACTGCATTTCAAGCAGCATGACTGCAACTCCTCCC---CAAACAACCAAGTAACACTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -10925,7 +10925,7 @@ GTTATGAAACCTTCAAAGTCATTGGGGGTTGGTCCAAACCTAACTCCAAATTACAAACAAATAGGCAAATCATAGTTGAA AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAGGCTGCATCAATCGGTGCTTTTATGTAGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JQ858447|A/swine/Illinois/A01134482/2011|H1N2|N2|USA|Illinois|1B.2.2.2|2/22/11 +>2002A|JQ858447|A/swine/Illinois/A01134482/2011|H1N2|N2|USA|Illinois|1B.2.2.2|2/22/11 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -10944,7 +10944,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|JQ906903|A/swine/Kansas/A01076181/2009|H1N2|N2|USA|Kansas|1B.2.2.2|12/13/09 +>2002A|JQ906903|A/swine/Kansas/A01076181/2009|H1N2|N2|USA|Kansas|1B.2.2.2|12/13/09 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAACATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGAAAGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -10963,7 +10963,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAGGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JQ906916|A/swine/Minnesota/A01116842/2011|H1N2|N2|USA|Minnesota|1B.2.2.2|10/20/11 +>2002A|JQ906916|A/swine/Minnesota/A01116842/2011|H1N2|N2|USA|Minnesota|1B.2.2.2|10/20/11 ATGAATCCAAACCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTYATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGATCAACACCACCATAGAGAAAGAAATATGCCCC @@ -10982,7 +10982,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACTAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT AATAAGGGGAAGGAAGGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTTTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|JQ922349|A/swine/Ohio/A01116890/2011|H1N2|N2|USA|Ohio|1B.2.2.2|11/8/11 +>2002A|JQ922349|A/swine/Ohio/A01116890/2011|H1N2|N2|USA|Ohio|1B.2.2.2|11/8/11 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTCTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCTC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11001,7 +11001,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|JX092466|A/swine/Iowa/A01202742/2011|H1N2|N2|USA|Iowa|1B.2.2.1|10/20/11 +>2002A|JX092466|A/swine/Iowa/A01202742/2011|H1N2|N2|USA|Iowa|1B.2.2.1|10/20/11 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAACTCCCCCC---CAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -11020,7 +11020,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTATGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JX092478|A/swine/Indiana/A01202792/2011|H1N2|N2|USA|Indiana|1B.2.2.2|11/3/11 +>2002A|JX092478|A/swine/Indiana/A01202792/2011|H1N2|N2|USA|Indiana|1B.2.2.2|11/3/11 ATGAATCCAAATCAAAAGATAATAACAATTGGATATGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11039,7 +11039,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|JX163273|A/swine/Iowa/A01203482/2012|H3N2|N2|USA|Iowa|3.1990.4.2-3|4/30/12 +>2002B|JX163273|A/swine/Iowa/A01203482/2012|H3N2|N2|USA|Iowa|3.1990.4.2-3|4/30/12 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCAWCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAATTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11058,7 +11058,7 @@ GCTATGAAACTTTCAAAGTCATCAAAGGATGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JX163279|A/swine/Indiana/A01203509/2012|H3N2|N2|USA|Indiana|3.1990.4.1|5/9/12 +>2002B|JX163279|A/swine/Indiana/A01203509/2012|H3N2|N2|USA|Indiana|3.1990.4.1|5/9/12 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11077,7 +11077,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|JX657808|A/swine/Nebraska/A01240645/2012|H1N2|N2|USA|Nebraska|1B.2.2.2|1/3/12 +>2002A|JX657808|A/swine/Nebraska/A01240645/2012|H1N2|N2|USA|Nebraska|1B.2.2.2|1/3/12 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGCAACTACTGTGACATTGCATTTCAAGCAGCATGACTACAACTACCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAAAAATAATAGAAAGAAACATAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -11134,7 +11134,7 @@ GTTATGAAACCTTCAAAGTCATCGAAGGCTGGTCCAAACCTAATTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AGAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGATGCTTTTATGTGGAGTT AATAAGGGGAAGGAAAAGGGAAAATAAAGTCTGGTGGACCTCAAACAGTATCGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTTATGCCTATATAA ->2002|KC589445|A/swine/Minnesota/A01280592/2013|H3N2|N2|USA|Minnesota|3.1990.4.2-3|1/30/13 +>2002B|KC589445|A/swine/Minnesota/A01280592/2013|H3N2|N2|USA|Minnesota|3.1990.4.2-3|1/30/13 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCATGATTGCAACTCCTCCC---CAAACAACCAAGTGATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAAATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11153,7 +11153,7 @@ GCTATGAAACCTTCAAAGTCATCAGAGGATGGTCCAAACCTAACTCCAAATTACAGACAAGTAGGCAAGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KC676222|A/swine/Nebraska/A01445134/2013|H1N2|N2|USA|Nebraska|1B.2.2.1|2/1/13 +>2002A|KC676222|A/swine/Nebraska/A01445134/2013|H1N2|N2|USA|Nebraska|1B.2.2.1|2/1/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAATTCCCCCC---AGAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAAAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -11191,7 +11191,7 @@ GTTATGAAACCTTCAAAGTCATCGAAGGCTGGTCCAAACCTAATTCCAAAATACAGACAAATAGGCAAGTCATAGTTGAA AGAGGTAACAGATCCGGTTATTCCGGTATTTTCTCCGTTGAAGACAAAAGCTGCATCAACAGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KC748509|A/swine/Minnesota/A01445352/2013|H1N2|N2|USA|Minnesota|1B.2.2.1|2/7/13 +>2002A|KC748509|A/swine/Minnesota/A01445352/2013|H1N2|N2|USA|Minnesota|1B.2.2.1|2/7/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAATTCCCCTC---AGAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAAAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -11210,7 +11210,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGATCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KC866491|A/swine/Kentucky/12TOSU1098/2012|H1N2|N2|USA|Kentucky|1B.2.2.1|11/5/12 +>2002A|KC866491|A/swine/Kentucky/12TOSU1098/2012|H1N2|N2|USA|Kentucky|1B.2.2.1|11/5/12 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAATTCCCCCC---AAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAAAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -11229,7 +11229,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTATTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KF487560|A/swine/Minnesota/A01432889/2013|H1N2|N2|USA|Minnesota|1B.2.2.2|13-Jul +>2002A|KF487560|A/swine/Minnesota/A01432889/2013|H1N2|N2|USA|Minnesota|1B.2.2.2|13-Jul ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAATAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCTC---CAAACAACCAAGCAATGCTTT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGATCAACAACACCATAGAGAAAGAAATATGCCCC @@ -11248,7 +11248,7 @@ GTTATGAAACCTTCAAAGTCATTGGGGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCCGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|KF814063|A/swine/Iowa/13B093/2013|H1N2|N2|USA|Iowa|1B.2.2.2|2/26/13 +>2002A|KF814063|A/swine/Iowa/13B093/2013|H1N2|N2|USA|Iowa|1B.2.2.2|2/26/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTTCTTATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTCCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACATAACAGAGATTGTGTATTTGATCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11267,7 +11267,7 @@ GTTATGAAACTTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACTAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGCATTTTCTCCGTTGAAGGAAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTTTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|KF874248|A/swine/Iowa/A01394642/2013|H1N2|N2|USA|Iowa|1B.2.2.2|10/31/13 +>2002A|KF874248|A/swine/Iowa/A01394642/2013|H1N2|N2|USA|Iowa|1B.2.2.2|10/31/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCTC---CAAACAACCAAGCAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACCGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11286,7 +11286,7 @@ GTTATGAAACTTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATGTAA ->2002|KF885652|A/swine/Iowa/13C075/2013|H3N2|N2|USA|Iowa|3.1990.4.2-3|3/26/13 +>2002B|KF885652|A/swine/Iowa/13C075/2013|H3N2|N2|USA|Iowa|3.1990.4.2-3|3/26/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTGCAACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11305,7 +11305,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAGGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KF986967|A/swine/USA/A01409276/2013|H3N2|N2|USA|Unknown|3.1990.4.1|11/1/13 +>2002B|KF986967|A/swine/USA/A01409276/2013|H3N2|N2|USA|Unknown|3.1990.4.1|11/1/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAATGGAGATTGTGTATCTGACCAACACCACTATAGAGAAGGAAATATGCCCC @@ -11324,7 +11324,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAACCTCATGCCTATATAA ->2002|KJ493360|A/swine/Illinois/A01409964/2014|H1N2|N2|USA|Illinois|1B.2.2.2|14-Feb +>2002A|KJ493360|A/swine/Illinois/A01409964/2014|H1N2|N2|USA|Illinois|1B.2.2.2|14-Feb ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAATCAAGCAATACTGT GTGAACCAACAATAATAGAAAGAAAAACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAGAGAAGTATGCCCC @@ -11343,7 +11343,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|KJ734793|A/swine/Minnesota/A01493481/2014|H3N2|N2|USA|Minnesota|3.1990.4.1|3/26/14 +>2002B|KJ734793|A/swine/Minnesota/A01493481/2014|H3N2|N2|USA|Minnesota|3.1990.4.1|3/26/14 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11362,7 +11362,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KM409516|A/swine/Nebraska/A01476165/2014|H3N2|N2|USA|Nebraska|3.1990.4.1|7/28/14 +>2002B|KM409516|A/swine/Nebraska/A01476165/2014|H3N2|N2|USA|Nebraska|3.1990.4.1|7/28/14 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11381,7 +11381,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KP772315|A/swine/Illinois/A01462549/2015|H3N2|N2|USA|Illinois|3.1990.4.6|1/20/15 +>2002A|KP772315|A/swine/Illinois/A01462549/2015|H3N2|N2|USA|Illinois|3.1990.4.6|1/20/15 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCATGACCACAACCTCTCTC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAAATTGTGTATTTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -11400,7 +11400,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGCATTTTCTCCGTTGAAAATAAAAACTGTATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGAAAAAAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGTACCTCAGGTACAT ATGGAACAGGCTCGTGGCCTGATGGGGCAGATATCAGTCTCATGCCTATATAA ->2002|KP890043|A/swine/Illinois/A01462594/2015|H3N2|N2|USA|Illinois|3.1990.4.1|1/23/15 +>2002B|KP890043|A/swine/Illinois/A01462594/2015|H3N2|N2|USA|Illinois|3.1990.4.1|1/23/15 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTGATGCAAGTTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAGAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGTCTC @@ -11419,7 +11419,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KT274678|A/swine/Arkansas/A02024832/2015|H1N2|N2|USA|Arkansas|1B.2.2.1|6/16/15 +>2002B|KT274678|A/swine/Arkansas/A02024832/2015|H1N2|N2|USA|Arkansas|1B.2.2.1|6/16/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11438,7 +11438,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KT313462|A/swine/Nebraska/A01823392/2015|H3N2|N2|USA|Nebraska|3.1990.4.1|7/7/15 +>2002B|KT313462|A/swine/Nebraska/A01823392/2015|H3N2|N2|USA|Nebraska|3.1990.4.1|7/7/15 ATGAATCCAAATCAAAAAATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTAGTGACCACTGTAACACTGCATTTCAATCAACACGGTTGCGACTCCTCCC---CAAACAACCAGGCAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11476,7 +11476,7 @@ GTTATGAAACCTTCAAAGTCATCAGAGGCTGGTCAAAACCTAACTCCAAACTACAGACAAACAGGCAAGTCATAGTTGAA GGAAGCAAAAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAGGAGGAAACCAAAGTCTGGTGGACCTCAAATAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KT429529|A/swine/Illinois/A02025300/2015|H1N2|N2|USA|Illinois|1B.2.2.1|7/16/15 +>2002B|KT429529|A/swine/Illinois/A02025300/2015|H1N2|N2|USA|Illinois|1B.2.2.1|7/16/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11495,7 +11495,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KT446465|A/swine/Iowa/A02025359/2015|H1N2|N2|USA|Iowa|1A.1.1|7/22/15 +>2002A|KT446465|A/swine/Iowa/A02025359/2015|H1N2|N2|USA|Iowa|1A.1.1|7/22/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAGTTCCCCTC---AGAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAGAAAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAATATGCCCC @@ -11514,7 +11514,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGATCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KT633514|A/swine/South_Dakota/A01472948/2015|H1N2|N2|USA|South_Dakota|1B.2.2.2|8/12/15 +>2002B|KT633514|A/swine/South_Dakota/A01472948/2015|H1N2|N2|USA|South_Dakota|1B.2.2.2|8/12/15 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCACCATTGCCACAATATGCTTCCTTATGCAAGTTGC AATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAAACAACCAAGCAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11533,7 +11533,7 @@ GTTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|KT733590|A/swine/Minnesota/A01940042/2015|H1N2|N2|USA|Minnesota|1B.2.2.1|8/18/15 +>2002A|KT733590|A/swine/Minnesota/A01940042/2015|H1N2|N2|USA|Minnesota|1B.2.2.1|8/18/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTTCTTATGCAAATTGC CATCCTGGTAACCACTGTAACATTGCATTTCAAGCAACATGACTACAATTTTTCCCAAAAAAACAACCAAGTAATGCTGT GTGAACCAACAATAATAGAAAAAAACACAACAGAGATTGTGTATTTGACCAACATCACCATAGAGAAGGAAGTATGCCCC @@ -11552,7 +11552,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGTATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGCAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTATTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KU513707|A/swine/Illinois/A01796671/2015|H1N2|N2|USA|Illinois|1B.2.2.1|12/8/15 +>2002B|KU513707|A/swine/Illinois/A01796671/2015|H1N2|N2|USA|Illinois|1B.2.2.1|12/8/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTATAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11571,7 +11571,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCGAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KU598254|A/swine/South_Dakota/A01941705/2015|H1N2|N2|USA|South_Dakota|1B.2.2.2|12/21/15 +>2002A|KU598254|A/swine/South_Dakota/A01941705/2015|H1N2|N2|USA|South_Dakota|1B.2.2.2|12/21/15 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGGTTCTCTCATTATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCATGACTACAACCCTTCTC---CAAACAACCAGACAATGCCGT GTGAACCAACAATAATAGAGAGAAACACAACAAAGATTGTGTATTTGACAAACACCACCATAGAGAAGGAAATATGCCCC @@ -11590,7 +11590,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAGGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGTTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTGAAGTCTGGTGGACATCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATAAATATCATGCCTATATAA ->2002|KX008725|A/swine/North_Carolina/A01732888/2016|H3N2|N2|USA|North_Carolina|3.1990.4.1|3/3/16 +>2002B|KX008725|A/swine/North_Carolina/A01732888/2016|H3N2|N2|USA|North_Carolina|3.1990.4.1|3/3/16 ATGAATCCAAATCAAAAGATAATAACAATCGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACAGTAACACTACATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCAAGTAATGTTCT GCGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATTTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11609,7 +11609,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAAGCAAAAATTGTATCAATAGATGCTTTTATGTGGAGTT GATAAGAGGAAGGAAAGAAGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KX185844|A/swine/Pennsylvania/A01894999/2016|H1N2|N2|USA|Pennsylvania|1B.2.1|4/5/16 +>2002B|KX185844|A/swine/Pennsylvania/A01894999/2016|H1N2|N2|USA|Pennsylvania|1B.2.1|4/5/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTTCTCCC---CGAACAACCAAGTAAAGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGGTTGTGTATCTGACCAACACCACTGTAGAGAAGAAAATATGCCCC @@ -11628,7 +11628,7 @@ GCTATGAAACCTTCAAGGTCATCAAAGGATGGTCCAAACCCAACTCTAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KX185847|A/swine/Illinois/A01895166/2016|H1N2|N2|USA|Illinois|1B.2.2.2|4/6/16 +>2002A|KX185847|A/swine/Illinois/A01895166/2016|H1N2|N2|USA|Illinois|1B.2.2.2|4/6/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATTCTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCTCTCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGATCAACACCACTATAGAGAAAGAAATATGCCCC @@ -11647,7 +11647,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACTAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGCATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT AATAAGGGGAAGGAAGGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTGTTGTTGTTTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGAGCAGATATCAATCTCATGCCTATATAA ->2002|KX349975|A/swine/Minnesota/A01943420/2016|H3N2|N2|USA|Minnesota|3.2010.1|5/5/16 +>2002A|KX349975|A/swine/Minnesota/A01943420/2016|H3N2|N2|USA|Minnesota|3.2010.1|5/5/16 ATGAATCCAAATCAAAAGATAATGACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACCACTGTAACGTTACATTTCAAGCAGCATGATTACAACTCCCCTC---CAAACAACCAATCAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACCGAGATTGTGTATTTGACCAAAACCACCATAGAGAAAGAAATATGCCCC @@ -11666,7 +11666,7 @@ GTTATGAAACTTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAG AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACCAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATGTAA ->2002|KX618908|A/swine/Oklahoma/A01776961/2016|H3N2|N2|USA|Oklahoma|3.1990.4.1|6/20/16 +>2002B|KX618908|A/swine/Oklahoma/A01776961/2016|H3N2|N2|USA|Oklahoma|3.1990.4.1|6/20/16 ATGAATCCAAATCAAAAAATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATGATTGCGACTCCTCCC---CAGACAACCAAGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11685,7 +11685,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCCAACTCCAAATCACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGAAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KX761355|A/swine/Nebraska/A01778105/2016|H1N2|N2|USA|Nebraska|1B.2.2.2|7/8/16 +>2002A|KX761355|A/swine/Nebraska/A01778105/2016|H1N2|N2|USA|Nebraska|1B.2.2.2|7/8/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACATTATGCTTCCTTATGCAAATTGC CATCTTGGTAAATACCGTAGCATTACATTTCAAGAAGCACGACTACGACTCCCCTC---CAAACAACCAATCAATACGAT GTGAACCAATAATAATAGAAAGAAACACAACAAAGGTTGTATACCTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11704,7 +11704,7 @@ GTTATGAAACCTTCAAAGTCATTGGAGGCTGGTCCAAAGCTAACTCCAAACTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCTGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATAAATAGGTGCTTTTACGTGGAGTT GATAAGGGGAAGAAAAGAGGAGACTAAAGTCTGGTGGACCTCAAACAGTATTGTAGTGTTTTGTGGCACTTCAGGTACTT ATGGTACAGGCTCATGGCCTGATGGGGCGGATATCAATCTTATGCCTATATAA ->2002|KX867527|A/swine/Illinois/A01778773/2016|H1N2|N2|USA|Illinois|1B.2.2.1|8/24/16 +>2002B|KX867527|A/swine/Illinois/A01778773/2016|H1N2|N2|USA|Illinois|1B.2.2.1|8/24/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAATATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11723,7 +11723,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGAGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KX960313|A/swine/Illinois/A01443797/2013|H1N2|N2|USA|Illinois|1B.2.2.2|3/13/13 +>2002A|KX960313|A/swine/Illinois/A01443797/2013|H1N2|N2|USA|Illinois|1B.2.2.2|3/13/13 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCTTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAACAATGCTGT GTAAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -11742,7 +11742,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGACAAGTCATAGTTGAA AAGGGCGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|KY210989|A/swine/North_Carolina/A01782799/2016|H1N2|N2|USA|North_Carolina|1A.1.1|10/25/16 +>2002B|KY210989|A/swine/North_Carolina/A01782799/2016|H1N2|N2|USA|North_Carolina|1A.1.1|10/25/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGCTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTGCAACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAGACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11780,7 +11780,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGATGGTCCAAACCTAACTCCAAATCACAAACAAATAGGCAAGTTATAGTTGAA AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACTTCAAACAGCATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KY354182|A/swine/Indiana/03053/2010|H1N2|N2|USA|Indiana|1A.3.3.2|7/14/10 +>2002A|KY354182|A/swine/Indiana/03053/2010|H1N2|N2|USA|Indiana|1A.3.3.2|7/14/10 ATGAATCCAAACCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTTACATTGCATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAAAGATTGTGTATTTGACCAACACCACCATAGAGAAGGAAATATGCCCC @@ -11799,7 +11799,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGCTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KY382397|A/swine/North_Carolina/A01668664/2016|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|11/28/16 +>2002B|KY382397|A/swine/North_Carolina/A01668664/2016|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|11/28/16 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTGAAATTGCATTTCAAGCAGCACGATTGCAACTCCTCCT---CAAACAACCAAGTAATACTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATATGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11856,7 +11856,7 @@ GTTATGAAACCTTCAAAGTCATCAAAGGCTGGTCCAAACCTAATTCCAAAATACAGACAAATAGGCAAGTCATAGTTGAA AGGGGTGACAGATCAGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTAGAGTT GATAAGGGGGAGGAAAGAGGAATCTAAAGTCTGGTGGACCTCAAACAGTATCGTTGTGTTTTGTGGTACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|KY766081|A/swine/South_Dakota/A01673993/2017|H3N2|N2|USA|South_Dakota|3.2010.1|2/15/17 +>2002A|KY766081|A/swine/South_Dakota/A01673993/2017|H3N2|N2|USA|South_Dakota|3.2010.1|2/15/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTCATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCTC---CAAACAACCAAGCAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACCGAGATTGTGTATTTGACCAACACCACCATAGAGAGAGAAATATGCCCC @@ -11875,7 +11875,7 @@ GTTATGAAACTTTCAAAGTCATTGAAGGCTGGTCAAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTAATAGTTGAA AAAGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAAGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATGTAA ->2002|KY766097|A/swine/South_Carolina/A01932046/2017|H1N2|N2|USA|South_Carolina|1B.2.1|2/3/17 +>2002A|KY766097|A/swine/South_Carolina/A01932046/2017|H1N2|N2|USA|South_Carolina|1B.2.1|2/3/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCGTTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTTCAAGCAGCATGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAATACCATCATAGAGAAAGAAATATGCCCC @@ -11894,7 +11894,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGACCACAGCTAATTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAATAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGGACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|MF144699|A/swine/Pennsylvania/A02214908/2017|H1N2|N2|USA|Pennsylvania|1A.1.1|4/26/17 +>2002B|MF144699|A/swine/Pennsylvania/A02214908/2017|H1N2|N2|USA|Pennsylvania|1A.1.1|4/26/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGCTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCACGATTGCAACTCCTCCC---CAAACAACCAAGTAATGCTTT GTGAACCAACATTAATAGAAAGAAACAAGACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11913,7 +11913,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCCAACCTAACTCCAAATTACAGACAAATAGGCAGGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MF425639|A/swine/Minnesota/A01785268/2017|H3N2|N2|USA|Minnesota|3.2010.1|5/22/17 +>2002A|MF425639|A/swine/Minnesota/A01785268/2017|H3N2|N2|USA|Minnesota|3.2010.1|5/22/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCTT---CAAACAACCAAACAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACCGAGATTGTGTATTTGGCCAACACCACCATAGAGAAAGAAATATGTCCC @@ -11932,7 +11932,7 @@ GTTACGAAACTTTCAAAGTCATTGAAGGCTGGTCAAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAG AAAGATGACAGGTCCGGTTACTCTGGTATTTTTTCCGTTGAAGGTAAAAACTGCATCAATCGGTGCTTTTATGTAGAGTT GATAAGGGGAAGGAAAGAGGAAACTACAGTCTGGTGGACCTCAAACAGTATTGTTGTATTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATGTAA ->2002|MF664425|A/swine/Oklahoma/A01785279/2017|H1N2|N2|USA|Oklahoma|1B.2.2.1|7/18/17 +>2002A|MF664425|A/swine/Oklahoma/A01785279/2017|H1N2|N2|USA|Oklahoma|1B.2.2.1|7/18/17 ATGAATCCAACTCAAAGGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACGATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCACTTCAAGCAACATGACTACAATTCCTCCC---AAAACAACCAAGTAATACTGT GTGAACCAATAATAATAGAAAAAAACACAACAGAAATTGTGTATTTGACCAACATCACCATAGAGAAGGAAGTATGCCCC @@ -11951,7 +11951,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AAGGGTAAAAGGTCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGCAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MF765794|A/swine/Missouri/A02218506/2017|H1N2|N2|USA|Missouri|1B.2.2.1|7/25/17 +>2002B|MF765794|A/swine/Missouri/A02218506/2017|H1N2|N2|USA|Missouri|1B.2.2.1|7/25/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCGCAATATGCTTCCTTATGCAAATTGC CATCCTAGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAGCCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11970,7 +11970,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAGATACAGACAAATAGGCAAGTTATAGTTGAT AGAGGCAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAAGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MG198978|A/swine/Oklahoma/A02221360/2017|H1N2|N2|USA|Oklahoma|1B.2.2.1|9/14/17 +>2002B|MG198978|A/swine/Oklahoma/A02221360/2017|H1N2|N2|USA|Oklahoma|1B.2.2.1|9/14/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTCTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GCGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -11989,7 +11989,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACCAATAGGCAAGTTATAGTTGAT ATAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MG547990|A/swine/Iowa/A02134236/2017|H1N2|N2|USA|Iowa|1B.2.2.1|10/19/17 +>2002A|MG547990|A/swine/Iowa/A02134236/2017|H1N2|N2|USA|Iowa|1B.2.2.1|10/19/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCGTTGCCACAATATGCTTCCTTATGCAAATTGC TATCTTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAGTTCCCCTC---AGAACAACCAAGTGATGCTTT GTGAACCAACAATAATAGAGAAAAACATAACAGAGATTGTGTATTTGACCAACATCACCATGGAGAAGGAAATATGCCCC @@ -12008,7 +12008,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTGCAGACAAATAGGCAAGTCATAGTTGAA AAAGGTAACAGATCCGGTTATTCTGGTATTTTCTCAGTTGAAGGCAAAAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCAGATATCAATCTCATGCCTATATAA ->2002|MG663070|A/swine/Minnesota/A02135883/2017|H1N2|N2|USA|Minnesota|1B.2.2.1|11/6/17 +>2002B|MG663070|A/swine/Minnesota/A02135883/2017|H1N2|N2|USA|Minnesota|1B.2.2.1|11/6/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTCT GTGAACCAACAACAATAGAAAGAAACAAAACGGAGATTGTGTATCTGTTCAACACCACTGTGGAGAAGGAAATATGCCCC @@ -12027,7 +12027,7 @@ GCTATGAAACTTTCAAAGTCGTCAAAGGATGGTCCGAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTTGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MG745984|A/swine/Iowa/A01678527/2017|H3N2|N2|USA|Iowa|3.2010.1|12/14/17 +>2002A|MG745984|A/swine/Iowa/A01678527/2017|H3N2|N2|USA|Iowa|3.2010.1|12/14/17 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCACCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAACCCTTCTC---CAAACAACCAGACAATGCTGT GTGAACCAACAATAATAGAGAGAAACACAACAAAGATTGTGTATTTGTCAAACACCACCATAGAGAAGGAAGTATGCCCC @@ -12046,7 +12046,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGACAAGTCATAGTTGAA AAGGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGTTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATAAATATCATGCCTATATAA ->2002|MG870366|A/swine/Minnesota/A01785389/2017|H3N2|N2|USA|Minnesota|3.2010.1|12/18/17 +>2002B|MG870366|A/swine/Minnesota/A01785389/2017|H3N2|N2|USA|Minnesota|3.2010.1|12/18/17 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGCTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATTCTGGTAACTACTGTAACATTTCATTTCAAGCAGCATGATTGCAATTCCTCCC---CAAGCAACCAAGTAATGCTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12065,7 +12065,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCCAACCTAACTCCAAATTACAGACAAATAGGCAGGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGAAAAAACTGCATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACGT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MG917059|A/swine/North_Carolina/A02140803/2018|H3N2|N2|USA|North_Carolina|3.2010.1|1/10/18 +>2002B|MG917059|A/swine/North_Carolina/A02140803/2018|H3N2|N2|USA|North_Carolina|3.2010.1|1/10/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGCTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTTCATTTCAAGCNNTACGATTGCAACTCCTCCC---CAAGCAACCAAGTAATGCTCT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12103,7 +12103,7 @@ GTTATGAAACTTTCAAAGTCATCGAAGGTTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGAA AGAGGCAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGCAAAAACTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAAATAAAGTCTGGTGGACCTCGAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|MG930941|A/swine/Minnesota/A01785422/2018|H3N2|N2|USA|Minnesota|3.2010.1|1/18/18 +>2002A|MG930941|A/swine/Minnesota/A01785422/2018|H3N2|N2|USA|Minnesota|3.2010.1|1/18/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGCTTCTCTCATCATTGCAACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAACATGACTACAATTCCTCCC---AGAACAACCAAGTAATTCAGT GTGAGCCAATAATAATAGAAAAAAACACAACGGAGATTGTGTATTTGACCAACATCACCATTGAGAAGGAAATATGCCCC @@ -12122,7 +12122,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAGGTCATAGTTGAG AAAGGCAACAGATCTGGTTATTCTGGTATTTTCTCAGTTGAAGGCAATAGCTGCATCAATCGGTGCTTTTATGTGGAATT GATAAGGGGAAGGAGAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MG954311|A/swine/Nebraska/A01785418/2018|H1N2|N2|USA|Nebraska|1B.2.2.1|1/12/18 +>2002B|MG954311|A/swine/Nebraska/A01785418/2018|H1N2|N2|USA|Nebraska|1B.2.2.1|1/12/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC AATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCT---CAAGCAATCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12141,7 +12141,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATCACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGAGCAGATATCGATCTCATGCCTATATAA ->2002|MG954325|A/swine/North_Carolina/A01785421/2018|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|1/18/18 +>2002B|MG954325|A/swine/North_Carolina/A01785421/2018|H3N2|N2|USA|North_Carolina|3.1990.4.2-3|1/18/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAGTTGC CATCCTGGTAACTACTGTGAAATTGCATTTCAAGCAGCACGATTGCAACTCCTCCT---CAAACAACCAAGTAATACTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATATGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12160,7 +12160,7 @@ GCTATGAAACCTTCAAAGTCATCAAAGGGTGGTCCAAACCTAATTCCAAATTGCAGACAAATAGGCAGGTTATAGTTGAA AAAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGGAAAAACTGCATCAATAGGTGTTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAGAGTCTGGTGGACCTCAAACAGTATCGTTGTGTTTTGTGGCACTTCAGGTACAT ATGGGACAGGCTCATGGCCTGATGGGGCGGATATCAATCTAATGCCTATATGA ->2002|MG977429|A/swine/South_Dakota/A02142231/2018|H1N2|N2|USA|South_Dakota|1B.2.2.2|1/29/18 +>2002A|MG977429|A/swine/South_Dakota/A02142231/2018|H1N2|N2|USA|South_Dakota|1B.2.2.2|1/29/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCACCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACATTGCATTTCAAGCAGCATGACTACAACTCTTCTC---CAAACAACCAGACAAYGCTGT GTGAACCAAAAGTAATAGAGAGAAACACAACAAAGATTGTGTATTTGACAAACACCACCATAGAGAAGGAAATATGCCCC @@ -12179,7 +12179,7 @@ GTTATGAAACCTTAAAAGTCATTGAAGGCTGGTCCAAAGCTAATTCTAAATTACAGACAAATAGACAAGTCATAGTTGAA AAGGGTGACAGGTCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGTTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTGAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATAAATATCATGCCTATATAA ->2002|MH157020|A/swine/South_Dakota/A01785471/2018|H3N2|N2|USA|South_Dakota|3.1990.4.1|3/15/18 +>2002A|MH157020|A/swine/South_Dakota/A01785471/2018|H3N2|N2|USA|South_Dakota|3.1990.4.1|3/15/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTATTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC TATCCTAGTAACTACTGTAACATTACATTTCAAGCAGCAAGACTACAACTCCCCCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACCATAGAGAAAGAAATATGCCCC @@ -12198,7 +12198,7 @@ GTTATGAGACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTCATAGTTGCA GAAGGTGACAGATCCGGTTATTCTGGTATTTTCTCCGTTGAAGGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATCAGGGGAAGGAAAGAGGAAACTAAAGTTTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACTTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATATAA ->2002|MH157024|A/swine/North_Carolina/A01785450/2018|H3N2|N2|USA|North_Carolina|3.2010.1|2/15/18 +>2002B|MH157024|A/swine/North_Carolina/A01785450/2018|H3N2|N2|USA|North_Carolina|3.2010.1|2/15/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTATAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12217,7 +12217,7 @@ GCTATGAAACTTTCAGAGTCGTCAAAGGATGGTCTGAACCCAACTCCAAATTACAGTCAAATAGGCAAGTTATAGTTGAT AGAGGTAATAGGTCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MH160345|A/swine/Nebraska/A02155428/2018|H3N2|N2|USA|Nebraska|3.1990.4.1|3/9/18 +>2002A|MH160345|A/swine/Nebraska/A02155428/2018|H3N2|N2|USA|Nebraska|3.1990.4.1|3/9/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAAAATTGCATTTCAAGAAGCATAACTACAACTCCCTCC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACTATAGAGAAGGAGATATGCCCT @@ -12236,7 +12236,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAATTCCAAAGTACAGACAAATAGGCAAGTTATAGTTGAA AAAGGTGACAGGTCCGGTTATTCAGGTATTTTCTCCGTTGAAGGTAAAAACTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTCTTGTGTTTTGTGGCACATCAGGTACAT ATGGAGCAGGCTCATGGCCTGATGGGGCAGATATCAATCTCATGCCTATATAA ->2002|MH160351|A/swine/Missouri/A02155471/2018|H1N2|N2|USA|Missouri|1A.3.3.3|3/7/18 +>2002A|MH160351|A/swine/Missouri/A02155471/2018|H1N2|N2|USA|Missouri|1A.3.3.3|3/7/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTCATGCAAATTGC TATCCTAGTAACTACTGTAACGTTACATTTCAAGCAGCATGACTACAACTCCCCTC---CAAACAACCAAGCAATACTGT GTGAACCAACAATAATAGAAAGAAACACAACCGAGATTGTGTATTTGACCAACACCACCATAGAGAGAGAAATATGCCCC @@ -12255,7 +12255,7 @@ GTTATGAAACTTTCAAAGTCATTGAAGGCTGGTCAAAAGCTAACTCCAAATTACAGACAAATAGGCAAGTAATAGTTGAA AAAGGTGACAGATCCGGTTATTCTGGTATTTTCTCCGTTGAAAGTAAAAGCTGCATCAATCGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACAT ATGGAACAGGCTCATGGCCTGATGGAGCGGATATCAATCTCATGCCTATGTAA ->2002|MH179047|A/swine/SouthDakota/A01678549/2018|H3N2|N2|USA|Unknown|3.1990.4.1|3/19/18 +>2002A|MH179047|A/swine/SouthDakota/A01678549/2018|H3N2|N2|USA|Unknown|3.1990.4.1|3/19/18 ATGAATCCAAATCAGAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAAAATTGCATTTCAAGAAGCATAACTACAACTCCCTCC---CAAAAAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAGATTGTGTATTTGACCAACACCACTACAGAGAAGGAGATATGCCCT @@ -12274,7 +12274,7 @@ GTTATGAAACCTTCAAAGTCATTGAAGGCTGGTCCAAAGCTAATTCCAAAGTACAGACAAATAGGCAAGTTATAGTTGAA AAAGGTGACAGGTCCGGTTATTCAGGTATTTTCTCCGTTGAAGGTAAAAACTGCATCAATCGATGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTCTTGTGTTTTGTGGCACATCAGGTACAT ATGGAGCAGGCTCATGGCCTGATGGGGCAGATATCAATCTCATGCCTATATAA ->2002|MH182118|A/swine/Minnesota/A01785483/2018|H1N2|N2|USA|Minnesota|1B.2.2.1|3/23/18 +>2002B|MH182118|A/swine/Minnesota/A01785483/2018|H1N2|N2|USA|Minnesota|1B.2.2.1|3/23/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCGTTGCCACAATATGCTTCCTTATGCAAATTGC AATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCTTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAGTAGAAAGAAACAAAACGGAGATTGTGTACCTGACCAACACCATTGTAGAGAAGGAAATATGCCCC @@ -12293,7 +12293,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT ATAGGTAACAGATCCGGTTATTYTGGTATTTTYTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MH182148|A/swine/Iowa/A02155659/2018|H1N2|N2|USA|Iowa|1B.2.2.1|3/14/18 +>2002B|MH182148|A/swine/Iowa/A02155659/2018|H1N2|N2|USA|Iowa|1B.2.2.1|3/14/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAACATGCTTCCTTATGCAAATTGC AATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCATCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATYTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12312,7 +12312,7 @@ GCTATGAAACCTTCAAAGTCGTCAAAGGATGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AGAGGTAACAGGTCCGGTTATTCCGGTATTTTCTCCATTGAAGGCAAAAACTGTATTAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAGACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTCTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MH234417|A/swine/Ohio/OH_18_6910/2018|H3N2|N2|USA|Ohio|3.1990.4.1|3/26/18 +>2002B|MH234417|A/swine/Ohio/OH_18_6910/2018|H3N2|N2|USA|Ohio|3.1990.4.1|3/26/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATTATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTGACTACTGTAACACTGCATTTCAAGCAAGATGATTGCGACTCCTCCC---CAAACAACCAAGTAATGTTTT GCGAACCAACAATAATAGAAAGAAACAAAACGGAGATTGTGTATTTGACCAACACCACTGTAGAGAAAGAAATATGCCCC @@ -12331,7 +12331,7 @@ GCTACGAAACCTTCAAAGTCATCAAAGGGTGGTCCAAACCCAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGGT AGAGGTAACAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAGACAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGGAGGAAGGAGGAAACTAAAGTCTGGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCAGATATCAATCTCATGCCTACATAA ->2002|MH252088|A/swine/Minnesota/A01785492/2018|H1N2|N2|USA|Minnesota|1B.2.2.1|3/30/18 +>2002B|MH252088|A/swine/Minnesota/A01785492/2018|H1N2|N2|USA|Minnesota|1B.2.2.1|3/30/18 ATGAATCCAAATCAAAAGATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGTTTCCTCATGCAAATTGC AATCCTGGTGACTACTGTAACACTGCATTTCAAGCAACATAATTGCGACTCCTCCC---CAAACAACCATGTAATGTTTT GTGAACCAACAATAGTAGAAAGAAACAAAACGGAGATTGTGTACCTGACCAACACCACTGTAGAGAAGGAAATATGCCCC @@ -12350,7 +12350,7 @@ GCTATGAAACCTTCAAAGTCGTCGAAGGATGGTCCAAACCTAACTCCAAATTACAGACAAATAGGCAAGTTATAGTTGAT AAAGGTAACAGATCCGGTTATTCTGGTATTTTCTCCATTGAAGGCAAAAACTGTATCAATAGGTGCTTTTATGTGGAGTT GATAAGGGGAAGGAAAGAGGAAACTAAAGTCTTGTGGACCTCAAACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACGT ATGGAACAGGCTCATGGCCTGATGGGGCGGATATCAATCTCATGCCTATATAA ->2002|MH259518|A/swine/Illinois/A02157056/2018|H3N2|N2|USA|Illinois|3.1990.4.6|3/28/18 +>2002A|MH259518|A/swine/Illinois/A02157056/2018|H3N2|N2|USA|Illinois|3.1990.4.6|3/28/18 ATGAATCCAAATCAAAAAATAATAACAATTGGCTCTGTTTCTCTCATCATTGCCACAATATGCTTCCTTATGCAAATTGC CATCCTGGTAACTACTGTAACCTTGCATTTCAAGCAGCATGACCACAACCTCTCTC---CAAACAACCAAGCAATGCTGT GTGAACCAACAATAATAGAAAGAAACACAACAGAAATTGTGTATTTGACCAACACCACCATAGAGAAGGAAAAATGCCCC @@ -26824,4 +26824,4 @@ ATTGATTCTGTAAACAATGCTGTGGTAATGCCAGCCCATGGCCCAGCCAAAAGCATGGAATATGATGCCGTTGCTACTAC ACATTCCTGGATTCCCAAGAGGAATCGTTCTATTCTCAACACAAGCCAAAGGGGAATTCTTGAGGATGAACAGATGTACC AGAAGTGTTGCAATTTATTCGAGAAGTTTTTCCCTAGCAGTTCATATAGGAGACCGGTTGGAATTTCTAGCATGGTGGAG GCCATGGTGTCTAGGGCCCGGATTGATGCCAGAGTCGACTTTGAGTCTGGACGGATCAAGAAAGAAGAGTTCTCTGAGAT -CATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAAAGAATTTAACTTGTCCTTCATGAAAAAATG +CATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAAAGAATTTAACTTGTCCTTCATGAAAAAATG \ No newline at end of file