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swine-reps-pdm09.fasta
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swine-reps-pdm09.fasta
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>MW603033|A/swine/Indiana/A02525081/2021|H1N1|USA|01/19/2021
atgaaagcaatactagtagttctgctatacacatttgcaactgcaaatgcagacactttatgtataggttatcatgcgaa
caattcaacagacacagtagacacagtactagaaaaaaatgtaacagtaacacactctgttaaccttctagaagacaagc
ataacggtaaactatgcaaactaagaggggtagccccattgcatttgggtaaatgtaacattgctggctggatcctggga
aatccagagtgtggatcactctctacagcaagctcatggtcctacattgtggaaacatctagttcagacaatggaacgtg
ttatccaggagatttcatcaattatgaggaactaagagagcaattgagctcagtgtcatcatttgaaaggtttgagatat
tccccaagacaagttcatggcccaatcatgactcgaacaaaggtgtaacagcagcatgccctcacgctggagcaaaaagc
ttctacaagaatttaatatggctagttaaaaaagaaaattcatacccaaagctcagtcaatcctacattaatgataaagg
gaaagaagtccttgtgctgtggggcattcaccatccatctactactgctgaccaacaaagtctctatcaaaatgcagatg
catatgtttttgtggggacatcaaaatacagcaagaaattcaagccggaaatagcaaagagacccaaagtgagggatcaa
gaagggagaatgaactattactggacactagtagagccaggagacagaataacatttgaagcaactggaaatctagtggt
accgagatatgcattcacaatggaaagaaatgctgggtccggtattatcatttcagatacaccagtccatgattgcaata
caacttgtcagacacccgagggtgctataaacaccagcctcccatttcagaatatacatccgatcacaattggaaaatgt
ccaaagtatgtaaaaagcacaaaattgagactggcaacaggattgaggaatatcccgtccattcmatctagaggtctatt
tggggccattgccggcttcattgaagggggatggacagggatgatagatggatggtacggttatcatcatcaaaatgagc
aggggtcaggatatgcagccgacctgaagagcacacagaatgccattgacgagattactaacaaagtaaactctgtcatt
gaaaagatgaatacacagttcacagcagtgggtaaagagttcaaccatctggaaaaaagaatagagaatttaaataaaaa
agttgatgatggtttcctggacatttggacttacaatgccgaactattggttctattggaaaatgaaagaaccttggatt
accacgattcaaatgtgaataacttgtatgaaaaggtaagaaaccagttgaaaaacaatgccaaggaaattggaaacggc
tgctttgaattttatcacaaatgcgataacatgtgcatggaaagtgtcaaaaatgggacttatgactatccaaaatactc
agaggaagcaaaattaaaccgagagaaaatagatggagtaaagctggagtcaacaaggatttaccagattttggcgatct
attcaactgtcgccagttcattggtactggtagtctccctgggggcaatcagcttctggatgtgctctaatgggtctcta
caatgtagtatatgtatttaa
>MZ485434|A/swine/Colorado/A02635828/2021|H1N1|USA|05/11/2021
atgaaggcaatactagtagttctgctatatacatttacaaccgcaaatgcagacatattatgtataggttatcatgcaaa
caattcaacagacactgtagacacagtactggaaaagaatgtaacagtaacacactctgttaatcttctggaagacaagc
ataacggaaaactatgcaaactaagagggatagacccattgcatttgggtaaatgtaacattgctggctggatcctgggg
aatccagaatgtggatcactctccacggcaagttcatggtcctacattgtggaaacatctaattcagacaatggaacgtg
ttacccaggagatttcatcaactatgaggagctaagagagcaattgagctcagtatcatcatttgaaaggtttgaaatat
tccccaaaacaagttcatggcccaatcatgactcggacaaaggtgtaacggcagcatgtcctcacgctggagcaaaaagc
ttttacaacaacttgatatggctggttaaaaaagggaattcatacccaaagctcaaccaatcctacattaatgacaaagg
aaaagaagtcctcgtgctgtggggcattcaccatccatctactactgctgaccaacaaagtctctatcagaatgcagatg
catatgtttttgtggggacatcaaaatacagcaagaagttcaagccggaaatagcatcaagacccaaagtgagggatcaa
gaagggagaatgaactattactggacactagtagagccgggagacaaaataacattcgaagcaactggaaatctagtggt
accgagatacgcattcacaatggaaagaaatgctggatctggtattatcatttcagatacaccagtccacgattgcaata
caacttgtcagacacctgagggtgctataaacaccagcctcccatttcagaacatacacccgatcacaattgggaaatgt
ccaaaatatgtaaaaagcacaaaattgagactggccacaggattgaggaatgttccgtctattcaatctagaggcctatt
cggggccattgccggcttcattgaaggggggtggacaggaatggtagatggatggtacggttatcaccatcaaaatgagc
aggggtcaggatatgcagccgacctgacgagcacacagaatgccattgacaaaattactaataaggtaaattctgttatt
gaaaaaatgaatacacagttcacagcagtgggtaaagagttcaaccacctggaaaaaagaatagagaatctaaataaaaa
agttgatgatggtttcctggacatttggacttacaatgccgaactgctgattctattggaaaatgaaagaactttggact
atcacgattcaaatgtgaagaacttgtatgaaaaagtaagaaaccagttaaaaaacaatgccaaggaaattggaaacggc
tgctttgaattttaccacaaatgcgataacacgtgcatggaaagtgtcaaaaatgggacttatgactacccaaaatactc
agaggaagcaaaaataaacagagaaaaaatagatggggtaaagctggaatcaacaaggatctaccagattttggcgatct
attcaactgtcgccagttcattggtactggtagtctccctgggagcaatcagcttctggatgtgctctaatgggtctcta
caatgtagaatatgtatttga
>MZ666816|A/swine/Kansas/A02248038/2021|H1N1|USA|05/05/2021
atgaaggcaatactagtagttctgctgtatacatttacaaccgcagatgcagacacactatgtatagggtatcatgcgaa
caattcaacagacactgtagacacagtactagaaaagaacgtaacagtaacacactctgttaatcttcttgaagacaagc
ataacggaaaactatgcaaactaagaggggtagccccattgcatttgggtaaatgtaacattgctggctggatcctggga
aatccagagtgtgaatcactctccacagcaagatcatggtcctacattgtggaaacatctaattcagacaatggaacgtg
ttacccaggagatttcatcaattatgaggagctaagagagcaactgagctcagtgtcatcatttgaaaggtttgaaatat
tccccaagacaagttcatggcctaatcatgactcgaacaaaggtgtaacggcggcatgtcctcacgctggagcaaaaagc
ttctacaaaaacttggtatggctggttaaaaaagaaaattcatacccaaagctcaacaaaacctacattaatgataaagg
gaaagaagtcctcgtgctctggggcattcaccatccacctactactgctgaccaacaaagtctctatcagaatgcagatg
catatgtttttgtagggacatcaagatacagcaagaagttcaagccagaaatagcagaaagacccaaggtgaggaatcaa
gaagggagaatgaattattactggacactagtagagccgggagacaaaataacatttgaagcaactggaaatctagtggt
accgagatatgcattcacaatggaaagaaatgctggatctggtattatcatttcagatacaccagtccacgattgcaata
caacttgtcagacacccgagggtgctataaacaccagcctcccatttcagaatgtacatccgatcacaattgggaaatgt
ccaaagtatgtaaaaagcacaaaattgaggctggcaacagggttgaggaatgtcccgtctattcaatctagaggcctatt
cggggccattgccggtttcattgaaggggggtggacagggatggtagatggatggtacggttatcaccatcaaaatggag
cagggtcaggatatgcggccgatcttaagagcactcaaaatgccattgatgagattactaacaaagtaaattctgttatt
gaaaagatgaatacacagttcacagcagtgggtaaagagttcaaccatcttgaaaaaagaatagagaatctaaataaaaa
agttgatgatggtttcctggacgtttggacttacaatgccgaactgttggttctactggaaaatgaaagaactttggact
atcatgattcaaatgtgaagaacttgtacgaaaaaataagaacccaattaaaaaacaatgccaaggaaattggaaacggc
tgctttgagttttaccacaaatgcgataacacatgcatggaaagtgtcaagaatgggacttatgactacccaaaatactc
agaggaagcaaaattaaacagagaaaaaatagatggggtaaagctggaatcaacaaggatctaccagattttggcgatct
attcaactgtcgccagttcattggtactggtagtctccctgggggcaatcagcttctggatgtgctctaatgggtctcta
caatgtagaatatgtatttaa
>MT814305|A/swine/Iowa/A02524480/2020|H1N1|USA|07/06/2020
atgaaggcaatactagtagttctgctgtatacatttacaaccgcaaatgcagacacattatgcataggttatcatgcgaa
caattcaacagacactgtagacacagtactagaaaagaatgtaacggtaacacactctgttaatcttctggaagacaagc
ataacggaaaactatgcaaactaagaggggtagctccattgcatttgggtaaatgtaacattgctggctggatcctggga
aatccagagtgtgaatcactctctacagcaagatcatggtcctacattgtggaaacatctaattcagacaatggaacgtg
ttacccaggagatttcatcaattatgaggagctaagagagcaactgagctcagtgtcatcatttgaaaaatttgaaatat
tccccaagacaagttcatggcctaatcatgactcgaacaaaggtgtaacggcagcatgttctcacgctggagcaaaaagc
ttctacaaaaacttgatatggctggttaaaaaagggaattcatacccaaagctcaaccaaacctacattaatgataaagg
gaaagaaatcctcgtgctgtggggcattcaccatccacctactactgctgaccaacaaagtctctatcagaatgcagatg
catatgtttttgtggggacatcaagatacagcaagaagttcaagccggaaatagcaacaagacccaaagtgagggatcaa
gaagggagaatgaactattattggacactagtagagccgggagacaaaataacattcgaagcaactggaaatctagtggt
accgagatatgcattcacaatggaaagaaacgctggatctggtattatcatttcagatacaccagtccacgattgcaata
caacttgtcagacacccgagggtgctataaacaccagcctcccatttcagaatgtacatccgattacaattgggaagtgt
ccaaagtatgtaaaaagcacaaaattgaggctggccacaggattgaggaatgtcccgtctattcaatctagaggcctatt
cggggccattgcaggcttcattgaaggggggtggacagggatggtagatggatggtacggttatcaccatcaaaatgagc
aggggtcaggatatgcagccgatctgaagagcacacaaaatgccattgataagattactaacaaagtaaattctgttatt
gaaaagatgaatacacaattcacagcagtgggtaaagagttcaaccaccttgaaaaaagaatagagaatctaaataaaaa
agttgatgatggtttcctggacatttggacttacaatgccgaactgttggttctactggaaaatgaaagaactttggact
atcatgattcaaatgtgaagaacttgtatgaaaaagtaagaacccagttaaaaaacaatgccaaggaaattggaaacggt
tgcttcgaattttaccacaaatgcgataacacatgcatggaaagtgtcaagaatgggacttatgactacccaaaatactc
agaggaagcaaaattaaacagagaaaaaatagatggagtgaagctggaatcaacaaggatctaccagattttggcgatct
attcaactgtcgccagttcattggtactggtagtctccctgggggcaatcagcttctggatgtgctctaatgggtctcta
caatgtagaatatgtatttaa
>MZ476800|A/swine/Indiana/A02635811/2021|H1N1|USA|05/10/2021
atgaaggcaatactagtagttatgctgtatacatttacaaccgcaaatgcagacacattatgtataggttatcatgcgaa
caattcaacagacactgtggacacagtactagaaaagaatgtaacagtaacacactctgtcaatcttctggaagacaagc
ataacggaaaactatgcaaactaagaggggtagccccattgcatttgggtaaatgtaacattgctggctggatcctggga
aatccagagtgtgaatcactctccacagcaagatcatggtcctacattgtggaaacatctaattcagacaatggaacgtg
ttacccaggagatttcatcaattatgaggagctaagagagcaattgagctcagtgtcatcatttgaaaggtttgaaatat
tccccaaggcaagttcatggcctaatcatgactcggacaaaggtgtaacggcagcatgtcctcacgctggagcaaaaagc
ttctacaaaaacttgatatggctgattaaaaaaggaaactcatacccaaagatcaaccaaacctacattaatgataaagg
gaaagaagtcctcgtgctgtggggtattcaccatccacctactattgctgaccaacaaagcctctatcagaatgcagatg
catatgtttttgtggggacatcaagatacagcaagaagttcaagccggaaatagcaacaagacccaaagtgagggatcaa
gaagggagaatgaactattactggacactagtagaaccgggagacaaaataacattcgaagcaactggtaatctagtggc
accgagatatgcattcacaatggaaagagatgctggatctggtattatcatytcagatacaccagtccacgattgcaata
caacttgtcagacacccgagggtgctataaacaccagcctcccatttcagaatgtacatccgatcacgattgggaaatgt
ccaaagtatgtaaaaagcacaaaattgagactggccacaggattgaggaatgtcccgtctattcaatctagaggcctatt
cggggccattgctggcttcatcgaaggggggtggacagggatggtagatggatggtacggttatcaccatcaaaatgagc
aggggtcaggatatgcagccgatctgaagagcacgcaaaatgccattgataagattactaacaaagtaaattctgttatt
gaaaagatgaatacacagttcacagcagttggtaaagagttcaaccacctcgaaaaaagaatagagaatctaaataaaaa
ggttgatgatggtttcctggacatttggacttacaatgctgaactgttggttctactggaaaacgaaagaactttggact
atcacgattcaaatgtgaagaacttgtatgaaaaagtaagaaaccagttaaaaaacaatgccaaggaaattggaaacggc
tgttttgaattttaccacaaatgcgacaacacatgcatggaaagtgtcaagaatgggacttatgactacccaaaatactc
agaggaagcaaaattgaacagagaaaaaatagatggagtaaagctggactcaacaaggatctaccagattttggcgatct
attcaactgttgccagttcattggtactggtagtctccctgggggcaatcagcttctggatgtgctctaatgggtctcta
cagtgtagaatatgtatttaa
>MW579260|A/swine/Missouri/A01104146/2020|H1N1|USA|12/14/2020
atgaaggcaatactagtagttctgctgtatacatttacaaccgcaaatgcagacacattatgtataggttatcatgcgaa
caattcaactgacactgtggacacagtactcgaaaagaatgtaacagtaacacactctgtcaatcttctggaagacaagc
ataacggaaaactatgcaaactaagaggggtagccccattgcatttgggtaaatgtaacattgctggctggatcctggga
aatccagagtgtgaatcactctccacagcaaggtcatggtcctacattgtggaaacatctaattcagacaatggaacgtg
ttacccaggagatttcatcaattatgaggagctaagagagcaattgagctcagtgtcatcatttgaaaggtttgaaatat
tccccaagacaagttcatggcctaatcatgactcggacaaaggtgtaacggcagcatgtcctcacgctggagcaaaaagc
ttctacaaaaacttgatatggctggttaaaaaagaaaattcatacccaaagctcaaccaaacctacattaatgataaagg
gaaagaagtccttgtgctgtggggcattcaccatccacctactattgcttcccaagaaagtctctatcagaatgcagatg
catatgtttttgtggggacatcaagatacagcaagaagttcaagccggaaatagctacaagacccaaagtgagggatcaa
gaagggagaatgaactattactggacactagtagaaccgggagacaaaataacattcgaagcaactggaaatctagtggt
accgagatatgcattcacaatggaaagagatgctggatctggtattatcatttcagatacaccagtccacgattgcaata
caacttgtcagacacccgagggtgctataaacaccagcctcccatttcagaatgtacatccgattacaattgggaaatgt
ccaaagtatgtaaaaagcacaaaattgagactggccacaggattgaggaatgtcccgtctattcaatctagaggcctatt
cggggccattgctggcttcattgaaggggggtggacagggatggtagatggatggtacggttatcaccatcaaaatgagc
aggggtcaggatatgcagccgatctgaagagcacacaaaatgccgttgataagattactaacaaagtaaattctgttatt
gaaaagatgaatacacagttcacagcagtgggtaaagagttcaaccaccttgaaaaaagaatagagaatctaaataaaaa
agttgatgatggtttcctggacatttggacttacaatgccgaactgttggttctactggaaaacgaaagaactttggact
atcacgattcaaatgtgaagaacttgtatgaaaaagtaagaaaccagttaaaaaacaatgccaaggaaattggaaacggc
tgctttgaattttaccacaaatgtgacaacacatgcatggaaagtgtcaagaatgggacttatgactacccaaaatactc
agaggaagcaaaattaaacagagaaaaaatagatggagtaaagctggaatcaacaaggatctaccagattttggcaatct
attcaactgttgccagttcattggtactggtagtctccctgggggcaatcagcttctggatgtgctctaatgggtctcta
cagtgtagaatatgtatttaa